finishm 0.0.1

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Files changed (554) hide show
  1. checksums.yaml +7 -0
  2. data/.document +5 -0
  3. data/.gitmodules +3 -0
  4. data/.rspec +1 -0
  5. data/Gemfile +31 -0
  6. data/LICENSE.txt +20 -0
  7. data/README.md +59 -0
  8. data/Rakefile +51 -0
  9. data/VERSION +1 -0
  10. data/bin/assembly_visualiser +106 -0
  11. data/bin/check_primer_combinations.rb +73 -0
  12. data/bin/contig_joiner.rb +244 -0
  13. data/bin/contigs_against_assembly.rb +153 -0
  14. data/bin/finishm +143 -0
  15. data/bin/finishm_assembler +55 -0
  16. data/bin/finishm_gap_closer.rb +241 -0
  17. data/bin/kmer_abundance_file_tool.rb +49 -0
  18. data/bin/kmer_pattern_to_assembly.rb +377 -0
  19. data/bin/kmer_profile_finder.rb +92 -0
  20. data/bin/kmers_count_parse.d +52 -0
  21. data/bin/kmers_count_tabulate.d +123 -0
  22. data/bin/kmers_count_tabulate.rb +84 -0
  23. data/bin/pcr_result_parser.rb +108 -0
  24. data/bin/primer_finder.rb +119 -0
  25. data/bin/read_selection_by_kmer.d +174 -0
  26. data/bin/scaffold_by_pattern.rb +119 -0
  27. data/bin/scaffold_connection_possibilities_to_knowns.rb +193 -0
  28. data/bin/scaffold_end_coverages.rb +69 -0
  29. data/bin/trail_validator.rb +84 -0
  30. data/ext/mkrf_conf.rb +56 -0
  31. data/ext/src/Makefile +140 -0
  32. data/ext/src/src/allocArray.c +305 -0
  33. data/ext/src/src/allocArray.h +86 -0
  34. data/ext/src/src/autoOpen.c +107 -0
  35. data/ext/src/src/autoOpen.h +18 -0
  36. data/ext/src/src/binarySequences.c +813 -0
  37. data/ext/src/src/binarySequences.h +125 -0
  38. data/ext/src/src/concatenatedGraph.c +233 -0
  39. data/ext/src/src/concatenatedGraph.h +30 -0
  40. data/ext/src/src/concatenatedPreGraph.c +262 -0
  41. data/ext/src/src/concatenatedPreGraph.h +29 -0
  42. data/ext/src/src/correctedGraph.c +2643 -0
  43. data/ext/src/src/correctedGraph.h +32 -0
  44. data/ext/src/src/dfib.c +509 -0
  45. data/ext/src/src/dfib.h +69 -0
  46. data/ext/src/src/dfibHeap.c +89 -0
  47. data/ext/src/src/dfibHeap.h +39 -0
  48. data/ext/src/src/dfibpriv.h +105 -0
  49. data/ext/src/src/fib.c +628 -0
  50. data/ext/src/src/fib.h +78 -0
  51. data/ext/src/src/fibHeap.c +79 -0
  52. data/ext/src/src/fibHeap.h +41 -0
  53. data/ext/src/src/fibpriv.h +110 -0
  54. data/ext/src/src/globals.h +154 -0
  55. data/ext/src/src/graph.c +3932 -0
  56. data/ext/src/src/graph.h +233 -0
  57. data/ext/src/src/graphReConstruction.c +1472 -0
  58. data/ext/src/src/graphReConstruction.h +30 -0
  59. data/ext/src/src/graphStats.c +2167 -0
  60. data/ext/src/src/graphStats.h +72 -0
  61. data/ext/src/src/graphStructures.h +52 -0
  62. data/ext/src/src/kmer.c +652 -0
  63. data/ext/src/src/kmer.h +73 -0
  64. data/ext/src/src/kmerOccurenceTable.c +236 -0
  65. data/ext/src/src/kmerOccurenceTable.h +44 -0
  66. data/ext/src/src/kseq.h +223 -0
  67. data/ext/src/src/locallyCorrectedGraph.c +557 -0
  68. data/ext/src/src/locallyCorrectedGraph.h +40 -0
  69. data/ext/src/src/passageMarker.c +677 -0
  70. data/ext/src/src/passageMarker.h +137 -0
  71. data/ext/src/src/preGraph.c +1717 -0
  72. data/ext/src/src/preGraph.h +106 -0
  73. data/ext/src/src/preGraphConstruction.c +990 -0
  74. data/ext/src/src/preGraphConstruction.h +26 -0
  75. data/ext/src/src/probe_node_finder.c +84 -0
  76. data/ext/src/src/probe_node_finder.h +6 -0
  77. data/ext/src/src/readCoherentGraph.c +557 -0
  78. data/ext/src/src/readCoherentGraph.h +30 -0
  79. data/ext/src/src/readSet.c +1734 -0
  80. data/ext/src/src/readSet.h +67 -0
  81. data/ext/src/src/readToNode.c +218 -0
  82. data/ext/src/src/readToNode.h +35 -0
  83. data/ext/src/src/recycleBin.c +199 -0
  84. data/ext/src/src/recycleBin.h +58 -0
  85. data/ext/src/src/roadMap.c +342 -0
  86. data/ext/src/src/roadMap.h +65 -0
  87. data/ext/src/src/run.c +318 -0
  88. data/ext/src/src/run.h +52 -0
  89. data/ext/src/src/run2.c +744 -0
  90. data/ext/src/src/runReadToNode.c +29 -0
  91. data/ext/src/src/scaffold.c +1876 -0
  92. data/ext/src/src/scaffold.h +64 -0
  93. data/ext/src/src/shortReadPairs.c +1243 -0
  94. data/ext/src/src/shortReadPairs.h +32 -0
  95. data/ext/src/src/splay.c +259 -0
  96. data/ext/src/src/splay.h +43 -0
  97. data/ext/src/src/splayTable.c +1315 -0
  98. data/ext/src/src/splayTable.h +31 -0
  99. data/ext/src/src/tightString.c +362 -0
  100. data/ext/src/src/tightString.h +82 -0
  101. data/ext/src/src/utility.c +199 -0
  102. data/ext/src/src/utility.h +98 -0
  103. data/ext/src/third-party/zlib-1.2.3/ChangeLog +855 -0
  104. data/ext/src/third-party/zlib-1.2.3/FAQ +339 -0
  105. data/ext/src/third-party/zlib-1.2.3/INDEX +51 -0
  106. data/ext/src/third-party/zlib-1.2.3/Makefile +154 -0
  107. data/ext/src/third-party/zlib-1.2.3/Makefile.in +154 -0
  108. data/ext/src/third-party/zlib-1.2.3/README +125 -0
  109. data/ext/src/third-party/zlib-1.2.3/adler32.c +149 -0
  110. data/ext/src/third-party/zlib-1.2.3/adler32.o +0 -0
  111. data/ext/src/third-party/zlib-1.2.3/algorithm.txt +209 -0
  112. data/ext/src/third-party/zlib-1.2.3/amiga/Makefile.pup +66 -0
  113. data/ext/src/third-party/zlib-1.2.3/amiga/Makefile.sas +65 -0
  114. data/ext/src/third-party/zlib-1.2.3/as400/bndsrc +132 -0
  115. data/ext/src/third-party/zlib-1.2.3/as400/compile.clp +123 -0
  116. data/ext/src/third-party/zlib-1.2.3/as400/readme.txt +111 -0
  117. data/ext/src/third-party/zlib-1.2.3/as400/zlib.inc +331 -0
  118. data/ext/src/third-party/zlib-1.2.3/compress.c +79 -0
  119. data/ext/src/third-party/zlib-1.2.3/compress.o +0 -0
  120. data/ext/src/third-party/zlib-1.2.3/configure +459 -0
  121. data/ext/src/third-party/zlib-1.2.3/contrib/README.contrib +71 -0
  122. data/ext/src/third-party/zlib-1.2.3/contrib/ada/buffer_demo.adb +106 -0
  123. data/ext/src/third-party/zlib-1.2.3/contrib/ada/mtest.adb +156 -0
  124. data/ext/src/third-party/zlib-1.2.3/contrib/ada/read.adb +156 -0
  125. data/ext/src/third-party/zlib-1.2.3/contrib/ada/readme.txt +65 -0
  126. data/ext/src/third-party/zlib-1.2.3/contrib/ada/test.adb +463 -0
  127. data/ext/src/third-party/zlib-1.2.3/contrib/ada/zlib-streams.adb +225 -0
  128. data/ext/src/third-party/zlib-1.2.3/contrib/ada/zlib-streams.ads +114 -0
  129. data/ext/src/third-party/zlib-1.2.3/contrib/ada/zlib-thin.adb +141 -0
  130. data/ext/src/third-party/zlib-1.2.3/contrib/ada/zlib-thin.ads +450 -0
  131. data/ext/src/third-party/zlib-1.2.3/contrib/ada/zlib.adb +701 -0
  132. data/ext/src/third-party/zlib-1.2.3/contrib/ada/zlib.ads +328 -0
  133. data/ext/src/third-party/zlib-1.2.3/contrib/ada/zlib.gpr +20 -0
  134. data/ext/src/third-party/zlib-1.2.3/contrib/asm586/README.586 +43 -0
  135. data/ext/src/third-party/zlib-1.2.3/contrib/asm586/match.S +364 -0
  136. data/ext/src/third-party/zlib-1.2.3/contrib/asm686/README.686 +34 -0
  137. data/ext/src/third-party/zlib-1.2.3/contrib/asm686/match.S +329 -0
  138. data/ext/src/third-party/zlib-1.2.3/contrib/blast/Makefile +8 -0
  139. data/ext/src/third-party/zlib-1.2.3/contrib/blast/README +4 -0
  140. data/ext/src/third-party/zlib-1.2.3/contrib/blast/blast.c +444 -0
  141. data/ext/src/third-party/zlib-1.2.3/contrib/blast/blast.h +71 -0
  142. data/ext/src/third-party/zlib-1.2.3/contrib/blast/test.pk +0 -0
  143. data/ext/src/third-party/zlib-1.2.3/contrib/blast/test.txt +1 -0
  144. data/ext/src/third-party/zlib-1.2.3/contrib/delphi/ZLib.pas +557 -0
  145. data/ext/src/third-party/zlib-1.2.3/contrib/delphi/ZLibConst.pas +11 -0
  146. data/ext/src/third-party/zlib-1.2.3/contrib/delphi/readme.txt +76 -0
  147. data/ext/src/third-party/zlib-1.2.3/contrib/delphi/zlibd32.mak +93 -0
  148. data/ext/src/third-party/zlib-1.2.3/contrib/dotzlib/DotZLib.build +33 -0
  149. data/ext/src/third-party/zlib-1.2.3/contrib/dotzlib/DotZLib.chm +0 -0
  150. data/ext/src/third-party/zlib-1.2.3/contrib/dotzlib/DotZLib.sln +21 -0
  151. data/ext/src/third-party/zlib-1.2.3/contrib/dotzlib/DotZLib/AssemblyInfo.cs +58 -0
  152. data/ext/src/third-party/zlib-1.2.3/contrib/dotzlib/DotZLib/ChecksumImpl.cs +202 -0
  153. data/ext/src/third-party/zlib-1.2.3/contrib/dotzlib/DotZLib/CircularBuffer.cs +83 -0
  154. data/ext/src/third-party/zlib-1.2.3/contrib/dotzlib/DotZLib/CodecBase.cs +198 -0
  155. data/ext/src/third-party/zlib-1.2.3/contrib/dotzlib/DotZLib/Deflater.cs +106 -0
  156. data/ext/src/third-party/zlib-1.2.3/contrib/dotzlib/DotZLib/DotZLib.cs +288 -0
  157. data/ext/src/third-party/zlib-1.2.3/contrib/dotzlib/DotZLib/DotZLib.csproj +141 -0
  158. data/ext/src/third-party/zlib-1.2.3/contrib/dotzlib/DotZLib/GZipStream.cs +301 -0
  159. data/ext/src/third-party/zlib-1.2.3/contrib/dotzlib/DotZLib/Inflater.cs +105 -0
  160. data/ext/src/third-party/zlib-1.2.3/contrib/dotzlib/DotZLib/UnitTests.cs +274 -0
  161. data/ext/src/third-party/zlib-1.2.3/contrib/dotzlib/LICENSE_1_0.txt +23 -0
  162. data/ext/src/third-party/zlib-1.2.3/contrib/dotzlib/readme.txt +58 -0
  163. data/ext/src/third-party/zlib-1.2.3/contrib/infback9/README +1 -0
  164. data/ext/src/third-party/zlib-1.2.3/contrib/infback9/infback9.c +608 -0
  165. data/ext/src/third-party/zlib-1.2.3/contrib/infback9/infback9.h +37 -0
  166. data/ext/src/third-party/zlib-1.2.3/contrib/infback9/inffix9.h +107 -0
  167. data/ext/src/third-party/zlib-1.2.3/contrib/infback9/inflate9.h +47 -0
  168. data/ext/src/third-party/zlib-1.2.3/contrib/infback9/inftree9.c +323 -0
  169. data/ext/src/third-party/zlib-1.2.3/contrib/infback9/inftree9.h +55 -0
  170. data/ext/src/third-party/zlib-1.2.3/contrib/inflate86/inffas86.c +1157 -0
  171. data/ext/src/third-party/zlib-1.2.3/contrib/inflate86/inffast.S +1368 -0
  172. data/ext/src/third-party/zlib-1.2.3/contrib/iostream/test.cpp +24 -0
  173. data/ext/src/third-party/zlib-1.2.3/contrib/iostream/zfstream.cpp +329 -0
  174. data/ext/src/third-party/zlib-1.2.3/contrib/iostream/zfstream.h +128 -0
  175. data/ext/src/third-party/zlib-1.2.3/contrib/iostream2/zstream.h +307 -0
  176. data/ext/src/third-party/zlib-1.2.3/contrib/iostream2/zstream_test.cpp +25 -0
  177. data/ext/src/third-party/zlib-1.2.3/contrib/iostream3/README +35 -0
  178. data/ext/src/third-party/zlib-1.2.3/contrib/iostream3/TODO +17 -0
  179. data/ext/src/third-party/zlib-1.2.3/contrib/iostream3/test.cc +50 -0
  180. data/ext/src/third-party/zlib-1.2.3/contrib/iostream3/zfstream.cc +479 -0
  181. data/ext/src/third-party/zlib-1.2.3/contrib/iostream3/zfstream.h +466 -0
  182. data/ext/src/third-party/zlib-1.2.3/contrib/masm686/match.asm +413 -0
  183. data/ext/src/third-party/zlib-1.2.3/contrib/masmx64/bld_ml64.bat +2 -0
  184. data/ext/src/third-party/zlib-1.2.3/contrib/masmx64/gvmat64.asm +513 -0
  185. data/ext/src/third-party/zlib-1.2.3/contrib/masmx64/gvmat64.obj +0 -0
  186. data/ext/src/third-party/zlib-1.2.3/contrib/masmx64/inffas8664.c +186 -0
  187. data/ext/src/third-party/zlib-1.2.3/contrib/masmx64/inffasx64.asm +392 -0
  188. data/ext/src/third-party/zlib-1.2.3/contrib/masmx64/inffasx64.obj +0 -0
  189. data/ext/src/third-party/zlib-1.2.3/contrib/masmx64/readme.txt +28 -0
  190. data/ext/src/third-party/zlib-1.2.3/contrib/masmx86/bld_ml32.bat +2 -0
  191. data/ext/src/third-party/zlib-1.2.3/contrib/masmx86/gvmat32.asm +972 -0
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  193. data/ext/src/third-party/zlib-1.2.3/contrib/masmx86/gvmat32c.c +62 -0
  194. data/ext/src/third-party/zlib-1.2.3/contrib/masmx86/inffas32.asm +1083 -0
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  196. data/ext/src/third-party/zlib-1.2.3/contrib/masmx86/mkasm.bat +3 -0
  197. data/ext/src/third-party/zlib-1.2.3/contrib/masmx86/readme.txt +21 -0
  198. data/ext/src/third-party/zlib-1.2.3/contrib/minizip/ChangeLogUnzip +67 -0
  199. data/ext/src/third-party/zlib-1.2.3/contrib/minizip/Makefile +25 -0
  200. data/ext/src/third-party/zlib-1.2.3/contrib/minizip/crypt.h +132 -0
  201. data/ext/src/third-party/zlib-1.2.3/contrib/minizip/ioapi.c +177 -0
  202. data/ext/src/third-party/zlib-1.2.3/contrib/minizip/ioapi.h +75 -0
  203. data/ext/src/third-party/zlib-1.2.3/contrib/minizip/iowin32.c +270 -0
  204. data/ext/src/third-party/zlib-1.2.3/contrib/minizip/iowin32.h +21 -0
  205. data/ext/src/third-party/zlib-1.2.3/contrib/minizip/miniunz.c +585 -0
  206. data/ext/src/third-party/zlib-1.2.3/contrib/minizip/minizip.c +420 -0
  207. data/ext/src/third-party/zlib-1.2.3/contrib/minizip/mztools.c +281 -0
  208. data/ext/src/third-party/zlib-1.2.3/contrib/minizip/mztools.h +31 -0
  209. data/ext/src/third-party/zlib-1.2.3/contrib/minizip/unzip.c +1598 -0
  210. data/ext/src/third-party/zlib-1.2.3/contrib/minizip/unzip.h +354 -0
  211. data/ext/src/third-party/zlib-1.2.3/contrib/minizip/zip.c +1219 -0
  212. data/ext/src/third-party/zlib-1.2.3/contrib/minizip/zip.h +235 -0
  213. data/ext/src/third-party/zlib-1.2.3/contrib/pascal/example.pas +599 -0
  214. data/ext/src/third-party/zlib-1.2.3/contrib/pascal/readme.txt +76 -0
  215. data/ext/src/third-party/zlib-1.2.3/contrib/pascal/zlibd32.mak +93 -0
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  217. data/ext/src/third-party/zlib-1.2.3/contrib/puff/Makefile +8 -0
  218. data/ext/src/third-party/zlib-1.2.3/contrib/puff/README +63 -0
  219. data/ext/src/third-party/zlib-1.2.3/contrib/puff/puff.c +837 -0
  220. data/ext/src/third-party/zlib-1.2.3/contrib/puff/puff.h +31 -0
  221. data/ext/src/third-party/zlib-1.2.3/contrib/puff/zeros.raw +0 -0
  222. data/ext/src/third-party/zlib-1.2.3/contrib/testzlib/testzlib.c +275 -0
  223. data/ext/src/third-party/zlib-1.2.3/contrib/testzlib/testzlib.txt +10 -0
  224. data/ext/src/third-party/zlib-1.2.3/contrib/untgz/Makefile +14 -0
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  226. data/ext/src/third-party/zlib-1.2.3/contrib/untgz/untgz.c +674 -0
  227. data/ext/src/third-party/zlib-1.2.3/contrib/vstudio/readme.txt +73 -0
  228. data/ext/src/third-party/zlib-1.2.3/contrib/vstudio/vc7/miniunz.vcproj +126 -0
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  245. data/ext/src/third-party/zlib-1.2.3/crc32.c +423 -0
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  248. data/ext/src/third-party/zlib-1.2.3/deflate.c +1736 -0
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  251. data/ext/src/third-party/zlib-1.2.3/example +0 -0
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  253. data/ext/src/third-party/zlib-1.2.3/examples/README.examples +42 -0
  254. data/ext/src/third-party/zlib-1.2.3/examples/fitblk.c +233 -0
  255. data/ext/src/third-party/zlib-1.2.3/examples/gun.c +693 -0
  256. data/ext/src/third-party/zlib-1.2.3/examples/gzappend.c +500 -0
  257. data/ext/src/third-party/zlib-1.2.3/examples/gzjoin.c +448 -0
  258. data/ext/src/third-party/zlib-1.2.3/examples/gzlog.c +413 -0
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+ <VisualStudioProject
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+ ProjectType="Visual C++"
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+ Version="8,00"
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+ Name="testzlib"
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+ ProjectGUID="{AA6666AA-E09F-4135-9C0C-4FE50C3C654B}"
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+ RootNamespace="testzlib"
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+ Keyword="Win32Proj"
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+ >
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+ <Platforms>
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+ <Platform
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+ Name="Win32"
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+ />
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+ <Platform
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+ Name="x64"
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+ />
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+ <Platform
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+ Name="Itanium"
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+ />
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+ </Platforms>
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+ <ToolFiles>
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+ </ToolFiles>
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+ <Configurations>
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+ <Configuration
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+ Name="Debug|Win32"
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+ OutputDirectory="x86\TestZlib$(ConfigurationName)"
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+ IntermediateDirectory="x86\TestZlib$(ConfigurationName)\Tmp"
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+ ConfigurationType="1"
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+ CharacterSet="2"
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+ >
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+ <Tool
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+ Name="VCPreBuildEventTool"
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+ />
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+ <Tool
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+ Name="VCCustomBuildTool"
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+ />
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+ <Tool
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+ Name="VCXMLDataGeneratorTool"
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+ />
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+ <Tool
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+ Name="VCWebServiceProxyGeneratorTool"
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+ />
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+ <Tool
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+ Name="VCMIDLTool"
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+ />
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+ <Tool
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+ Name="VCCLCompilerTool"
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+ Optimization="0"
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+ AdditionalIncludeDirectories="..\..\.."
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+ PreprocessorDefinitions="ASMV;ASMINF;WIN32;ZLIB_WINAPI;_DEBUG;_CONSOLE;_CRT_NONSTDC_NO_DEPRECATE;_CRT_SECURE_NO_DEPRECATE"
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+ MinimalRebuild="true"
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+ BasicRuntimeChecks="0"
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+ RuntimeLibrary="1"
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+ BufferSecurityCheck="false"
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+ UsePrecompiledHeader="0"
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+ AssemblerOutput="4"
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+ AssemblerListingLocation="$(IntDir)\"
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+ WarningLevel="3"
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+ Detect64BitPortabilityProblems="true"
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+ DebugInformationFormat="4"
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+ />
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+ <Tool
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+ Name="VCManagedResourceCompilerTool"
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+ />
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+ <Tool
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+ Name="VCResourceCompilerTool"
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+ />
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+ <Tool
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+ Name="VCPreLinkEventTool"
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+ />
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+ <Tool
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+ Name="VCLinkerTool"
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+ AdditionalDependencies="..\..\masmx86\gvmat32.obj ..\..\masmx86\inffas32.obj"
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+ OutputFile="$(OutDir)/testzlib.exe"
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+ LinkIncremental="2"
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+ GenerateManifest="false"
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+ GenerateDebugInformation="true"
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+ ProgramDatabaseFile="$(OutDir)/testzlib.pdb"
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+ SubSystem="1"
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+ TargetMachine="1"
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+ />
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+ <Tool
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+ Name="VCALinkTool"
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+ />
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+ <Tool
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+ Name="VCManifestTool"
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+ />
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+ <Tool
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+ Name="VCXDCMakeTool"
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+ />
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+ Name="VCBscMakeTool"
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+ />
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+ <Tool
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+ Name="VCFxCopTool"
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+ />
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+ <Tool
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+ Name="VCAppVerifierTool"
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+ />
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+ <Tool
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+ Name="VCWebDeploymentTool"
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+ />
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+ <Tool
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+ Name="VCPostBuildEventTool"
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+ />
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+ </Configuration>
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+ <Configuration
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+ Name="Debug|x64"
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+ OutputDirectory="x64\TestZlib$(ConfigurationName)"
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+ IntermediateDirectory="x64\TestZlib$(ConfigurationName)\Tmp"
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+ ConfigurationType="1"
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+ >
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+ <Tool
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+ Name="VCPreBuildEventTool"
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+ />
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+ <Tool
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+ Name="VCCustomBuildTool"
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+ />
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+ <Tool
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+ Name="VCXMLDataGeneratorTool"
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+ />
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+ <Tool
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+ Name="VCWebServiceProxyGeneratorTool"
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+ />
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+ <Tool
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+ Name="VCMIDLTool"
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+ />
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+ <Tool
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+ Name="VCCLCompilerTool"
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+ AdditionalIncludeDirectories="..\..\.."
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+ PreprocessorDefinitions="ASMV;ASMINF;WIN32;ZLIB_WINAPI;_DEBUG;_CONSOLE;_CRT_NONSTDC_NO_DEPRECATE;_CRT_SECURE_NO_DEPRECATE"
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+ BasicRuntimeChecks="0"
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+ RuntimeLibrary="3"
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+ BufferSecurityCheck="false"
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+ AssemblerListingLocation="$(IntDir)\"
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+ />
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+ <Tool
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+ Name="VCManagedResourceCompilerTool"
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+ />
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+ <Tool
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+ Name="VCResourceCompilerTool"
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+ />
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+ <Tool
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+ Name="VCPreLinkEventTool"
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+ />
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+ <Tool
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+ Name="VCLinkerTool"
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+ AdditionalDependencies="..\..\masmx64\gvmat64.obj ..\..\masmx64\inffasx64.obj"
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+ GenerateManifest="false"
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+ />
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+ <Tool
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+ Name="VCALinkTool"
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+ />
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+ <Tool
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+ Name="VCManifestTool"
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+ />
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+ <Tool
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+ Name="VCXDCMakeTool"
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+ />
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+ <Tool
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+ Name="VCBscMakeTool"
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+ />
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+ <Tool
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+ Name="VCFxCopTool"
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+ />
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+ <Tool
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+ Name="VCAppVerifierTool"
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+ />
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+ <Tool
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+ Name="VCWebDeploymentTool"
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+ />
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+ <Tool
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+ Name="VCPostBuildEventTool"
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+ />
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+ </Configuration>
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+ <Configuration
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+ Name="Debug|Itanium"
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+ OutputDirectory="ia64\TestZlib$(ConfigurationName)"
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+ IntermediateDirectory="ia64\TestZlib$(ConfigurationName)\Tmp"
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+ ConfigurationType="1"
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+ CharacterSet="2"
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+ >
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+ <Tool
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+ Name="VCPreBuildEventTool"
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+ />
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+ <Tool
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+ Name="VCCustomBuildTool"
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+ />
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+ <Tool
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+ Name="VCXMLDataGeneratorTool"
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+ />
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+ <Tool
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+ Name="VCWebServiceProxyGeneratorTool"
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+ />
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+ <Tool
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+ Name="VCMIDLTool"
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+ TargetEnvironment="2"
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+ />
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+ <Tool
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+ Name="VCCLCompilerTool"
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+ Optimization="0"
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+ AdditionalIncludeDirectories="..\..\.."
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+ PreprocessorDefinitions="ZLIB_WINAPI;_DEBUG;_CONSOLE;_CRT_NONSTDC_NO_DEPRECATE;_CRT_SECURE_NO_DEPRECATE;WIN64"
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+ MinimalRebuild="true"
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+ BasicRuntimeChecks="0"
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+ RuntimeLibrary="3"
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+ BufferSecurityCheck="false"
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+ UsePrecompiledHeader="0"
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+ AssemblerOutput="4"
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+ AssemblerListingLocation="$(IntDir)\"
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+ WarningLevel="3"
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+ Detect64BitPortabilityProblems="true"
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+ DebugInformationFormat="3"
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+ />
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+ <Tool
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+ Name="VCManagedResourceCompilerTool"
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+ />
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+ <Tool
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+ Name="VCResourceCompilerTool"
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+ />
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+ <Tool
222
+ Name="VCPreLinkEventTool"
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+ />
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+ <Tool
225
+ Name="VCLinkerTool"
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+ OutputFile="$(OutDir)/testzlib.exe"
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+ LinkIncremental="2"
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+ GenerateManifest="false"
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+ GenerateDebugInformation="true"
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+ ProgramDatabaseFile="$(OutDir)/testzlib.pdb"
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+ SubSystem="1"
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+ TargetMachine="5"
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+ />
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+ <Tool
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+ Name="VCALinkTool"
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+ />
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+ <Tool
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+ Name="VCManifestTool"
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+ />
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+ <Tool
241
+ Name="VCXDCMakeTool"
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+ />
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+ <Tool
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+ Name="VCBscMakeTool"
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+ />
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+ <Tool
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+ Name="VCFxCopTool"
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+ />
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+ <Tool
250
+ Name="VCAppVerifierTool"
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+ />
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+ <Tool
253
+ Name="VCWebDeploymentTool"
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+ />
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+ <Tool
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+ Name="VCPostBuildEventTool"
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+ />
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+ </Configuration>
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+ <Configuration
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+ Name="ReleaseWithoutAsm|Win32"
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+ OutputDirectory="x86\TestZlib$(ConfigurationName)"
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+ IntermediateDirectory="x86\TestZlib$(ConfigurationName)\Tmp"
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+ ConfigurationType="1"
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+ CharacterSet="2"
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+ WholeProgramOptimization="1"
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+ >
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+ <Tool
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+ Name="VCPreBuildEventTool"
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+ />
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+ <Tool
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+ Name="VCCustomBuildTool"
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+ />
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+ <Tool
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+ Name="VCXMLDataGeneratorTool"
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+ />
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+ <Tool
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+ Name="VCWebServiceProxyGeneratorTool"
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+ />
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+ <Tool
280
+ Name="VCMIDLTool"
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+ />
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+ <Tool
283
+ Name="VCCLCompilerTool"
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+ Optimization="2"
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+ InlineFunctionExpansion="1"
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+ OmitFramePointers="true"
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+ AdditionalIncludeDirectories="..\..\.."
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+ PreprocessorDefinitions="WIN32;ZLIB_WINAPI;NDEBUG;_CONSOLE;_CRT_NONSTDC_NO_DEPRECATE;_CRT_SECURE_NO_DEPRECATE"
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+ StringPooling="true"
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+ BasicRuntimeChecks="0"
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+ RuntimeLibrary="0"
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+ BufferSecurityCheck="false"
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+ EnableFunctionLevelLinking="true"
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+ UsePrecompiledHeader="0"
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+ AssemblerListingLocation="$(IntDir)\"
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+ WarningLevel="3"
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+ Detect64BitPortabilityProblems="true"
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+ DebugInformationFormat="3"
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+ />
300
+ <Tool
301
+ Name="VCManagedResourceCompilerTool"
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+ />
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+ <Tool
304
+ Name="VCResourceCompilerTool"
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+ />
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+ <Tool
307
+ Name="VCPreLinkEventTool"
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+ />
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+ <Tool
310
+ Name="VCLinkerTool"
311
+ OutputFile="$(OutDir)/testzlib.exe"
312
+ LinkIncremental="1"
313
+ GenerateManifest="false"
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+ GenerateDebugInformation="true"
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+ SubSystem="1"
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+ OptimizeReferences="2"
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+ EnableCOMDATFolding="2"
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+ OptimizeForWindows98="1"
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+ TargetMachine="1"
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+ />
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+ <Tool
322
+ Name="VCALinkTool"
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+ />
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+ <Tool
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+ Name="VCManifestTool"
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+ />
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+ <Tool
328
+ Name="VCXDCMakeTool"
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+ />
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+ <Tool
331
+ Name="VCBscMakeTool"
332
+ />
333
+ <Tool
334
+ Name="VCFxCopTool"
335
+ />
336
+ <Tool
337
+ Name="VCAppVerifierTool"
338
+ />
339
+ <Tool
340
+ Name="VCWebDeploymentTool"
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+ />
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+ <Tool
343
+ Name="VCPostBuildEventTool"
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+ />
345
+ </Configuration>
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+ <Configuration
347
+ Name="ReleaseWithoutAsm|x64"
348
+ OutputDirectory="x64\TestZlib$(ConfigurationName)"
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+ IntermediateDirectory="x64\TestZlib$(ConfigurationName)\Tmp"
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+ ConfigurationType="1"
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+ WholeProgramOptimization="1"
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+ >
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+ <Tool
354
+ Name="VCPreBuildEventTool"
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+ />
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+ <Tool
357
+ Name="VCCustomBuildTool"
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+ />
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+ <Tool
360
+ Name="VCXMLDataGeneratorTool"
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+ />
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+ <Tool
363
+ Name="VCWebServiceProxyGeneratorTool"
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+ />
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+ <Tool
366
+ Name="VCMIDLTool"
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+ />
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+ <Tool
369
+ Name="VCCLCompilerTool"
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+ AdditionalIncludeDirectories="..\..\.."
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+ PreprocessorDefinitions="WIN32;ZLIB_WINAPI;NDEBUG;_CONSOLE;_CRT_NONSTDC_NO_DEPRECATE;_CRT_SECURE_NO_DEPRECATE"
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+ BasicRuntimeChecks="0"
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+ RuntimeLibrary="2"
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+ BufferSecurityCheck="false"
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+ AssemblerListingLocation="$(IntDir)\"
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+ />
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+ <Tool
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+ Name="VCManagedResourceCompilerTool"
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+ />
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+ <Tool
381
+ Name="VCResourceCompilerTool"
382
+ />
383
+ <Tool
384
+ Name="VCPreLinkEventTool"
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+ />
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+ <Tool
387
+ Name="VCLinkerTool"
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+ AdditionalDependencies=""
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+ GenerateManifest="false"
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+ />
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+ <Tool
392
+ Name="VCALinkTool"
393
+ />
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+ <Tool
395
+ Name="VCManifestTool"
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+ />
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+ <Tool
398
+ Name="VCXDCMakeTool"
399
+ />
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+ <Tool
401
+ Name="VCBscMakeTool"
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+ />
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+ <Tool
404
+ Name="VCFxCopTool"
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+ />
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+ <Tool
407
+ Name="VCAppVerifierTool"
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+ />
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+ <Tool
410
+ Name="VCWebDeploymentTool"
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+ />
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+ <Tool
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+ Name="VCPostBuildEventTool"
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+ />
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+ </Configuration>
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+ Name="ReleaseWithoutAsm|Itanium"
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+ OutputDirectory="ia64\TestZlib$(ConfigurationName)"
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+ IntermediateDirectory="ia64\TestZlib$(ConfigurationName)\Tmp"
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+ ConfigurationType="1"
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+ CharacterSet="2"
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+ WholeProgramOptimization="1"
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+ Name="VCPreBuildEventTool"
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+ />
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+ Name="VCCustomBuildTool"
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+ />
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+ <Tool
431
+ Name="VCXMLDataGeneratorTool"
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+ />
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434
+ Name="VCWebServiceProxyGeneratorTool"
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+ />
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+ Name="VCMIDLTool"
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+ TargetEnvironment="2"
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+ />
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+ <Tool
441
+ Name="VCCLCompilerTool"
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+ Optimization="2"
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+ InlineFunctionExpansion="1"
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+ OmitFramePointers="true"
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+ AdditionalIncludeDirectories="..\..\.."
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+ PreprocessorDefinitions="ZLIB_WINAPI;NDEBUG;_CONSOLE;_CRT_NONSTDC_NO_DEPRECATE;_CRT_SECURE_NO_DEPRECATE;WIN64"
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+ EnableFunctionLevelLinking="true"
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+ AssemblerListingLocation="$(IntDir)\"
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+ WarningLevel="3"
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+ Detect64BitPortabilityProblems="true"
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+ DebugInformationFormat="3"
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+ />
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+ <Tool
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+ Name="VCManagedResourceCompilerTool"
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+ />
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+ <Tool
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+ Name="VCResourceCompilerTool"
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+ />
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+ <Tool
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+ Name="VCPreLinkEventTool"
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+ />
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468
+ Name="VCLinkerTool"
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+ OutputFile="$(OutDir)/testzlib.exe"
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+ LinkIncremental="1"
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+ GenerateManifest="false"
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+ GenerateDebugInformation="true"
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+ SubSystem="1"
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+ OptimizeReferences="2"
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+ EnableCOMDATFolding="2"
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+ OptimizeForWindows98="1"
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+ TargetMachine="5"
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+ />
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+ Name="VCALinkTool"
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+ />
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+ Name="VCManifestTool"
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+ />
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+ Name="VCXDCMakeTool"
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+ />
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+ Name="VCBscMakeTool"
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+ />
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+ Name="VCFxCopTool"
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+ />
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+ Name="VCAppVerifierTool"
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+ />
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+ <Tool
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+ Name="VCWebDeploymentTool"
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+ />
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+ <Tool
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+ Name="VCPostBuildEventTool"
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+ />
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+ </Configuration>
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+ <Configuration
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+ Name="Release|Win32"
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+ OutputDirectory="x86\TestZlib$(ConfigurationName)"
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+ IntermediateDirectory="x86\TestZlib$(ConfigurationName)\Tmp"
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+ ConfigurationType="1"
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+ CharacterSet="2"
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+ WholeProgramOptimization="1"
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+ <Tool
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+ Name="VCPreBuildEventTool"
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+ />
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+ Name="VCCustomBuildTool"
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+ />
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+ <Tool
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+ Name="VCXMLDataGeneratorTool"
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+ />
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+ Name="VCWebServiceProxyGeneratorTool"
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+ />
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525
+ Name="VCMIDLTool"
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+ />
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+ Name="VCCLCompilerTool"
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+ OmitFramePointers="true"
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+ WarningLevel="3"
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+ Detect64BitPortabilityProblems="true"
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+ DebugInformationFormat="3"
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+ <Tool
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+ Name="VCManagedResourceCompilerTool"
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+ Name="VCResourceCompilerTool"
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+ />
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+ Name="VCPreLinkEventTool"
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+ />
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555
+ Name="VCLinkerTool"
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+ AdditionalDependencies="..\..\masmx86\gvmat32.obj ..\..\masmx86\inffas32.obj"
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+ OutputFile="$(OutDir)/testzlib.exe"
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+ Name="VCALinkTool"
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+ Name="VCXDCMakeTool"
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+ Name="VCBscMakeTool"
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580
+ Name="VCFxCopTool"
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583
+ Name="VCAppVerifierTool"
584
+ />
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586
+ Name="VCWebDeploymentTool"
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+ />
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+ Name="VCPostBuildEventTool"
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+ />
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+ </Configuration>
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+ Name="Release|x64"
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+ OutputDirectory="x64\TestZlib$(ConfigurationName)"
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+ ConfigurationType="1"
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+ Name="VCXMLDataGeneratorTool"
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+ />
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+ Name="VCWebServiceProxyGeneratorTool"
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612
+ Name="VCMIDLTool"
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+ />
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+ Name="VCCLCompilerTool"
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+ AssemblerListingLocation="$(IntDir)\"
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+ Name="VCManagedResourceCompilerTool"
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+ />
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+ Name="VCResourceCompilerTool"
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+ />
629
+ <Tool
630
+ Name="VCPreLinkEventTool"
631
+ />
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633
+ Name="VCLinkerTool"
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+ AdditionalDependencies="..\..\masmx64\gvmat64.obj ..\..\masmx64\inffasx64.obj"
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+ GenerateManifest="false"
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+ />
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+ Name="VCALinkTool"
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+ />
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+ Name="VCManifestTool"
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+ />
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+ Name="VCXDCMakeTool"
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+ />
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+ Name="VCBscMakeTool"
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+ />
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+ Name="VCFxCopTool"
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+ />
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653
+ Name="VCAppVerifierTool"
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+ />
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656
+ Name="VCWebDeploymentTool"
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+ />
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+ <Tool
659
+ Name="VCPostBuildEventTool"
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+ />
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+ </Configuration>
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663
+ Name="Release|Itanium"
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+ OutputDirectory="ia64\TestZlib$(ConfigurationName)"
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+ Name="VCPreBuildEventTool"
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+ />
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674
+ Name="VCCustomBuildTool"
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+ />
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+ Name="VCXMLDataGeneratorTool"
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+ />
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+ Name="VCWebServiceProxyGeneratorTool"
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+ />
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683
+ Name="VCMIDLTool"
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+ TargetEnvironment="2"
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+ />
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+ Name="VCCLCompilerTool"
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+ Optimization="2"
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+ InlineFunctionExpansion="1"
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+ OmitFramePointers="true"
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+ WarningLevel="3"
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+ Detect64BitPortabilityProblems="true"
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+ DebugInformationFormat="3"
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+ />
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+ <Tool
705
+ Name="VCManagedResourceCompilerTool"
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+ />
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+ Name="VCResourceCompilerTool"
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+ />
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