commonmeta-ruby 3.5.4 → 3.6
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/Gemfile.lock +16 -5
- data/bin/commonmeta +1 -1
- data/lib/commonmeta/readers/crossref_xml_reader.rb +1 -1
- data/lib/commonmeta/utils.rb +6 -6
- data/lib/commonmeta/version.rb +1 -1
- data/spec/cli_spec.rb +13 -8
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref/default.yml +13 -13
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref/to_bibtex.yml +13 -13
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref/to_crossref_xml.yml +25 -25
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref/to_datacite.yml +13 -13
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref/to_schema_org.yml +13 -13
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref_xml/default.yml +7 -7
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref_xml/to_bibtex.yml +7 -7
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref_xml/to_crossref_xml.yml +7 -59
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref_xml/to_datacite.yml +7 -7
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref_xml/to_schema_org.yml +7 -7
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/crossref/default.yml +24 -24
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/crossref/to_bibtex.yml +24 -24
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/crossref/to_citation.yml +24 -24
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/crossref/to_crossref_xml.yml +24 -24
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/crossref/to_datacite.yml +24 -24
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/crossref/to_jats.yml +24 -24
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/crossref/to_schema_org.yml +24 -24
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/datacite/default.yml +16 -16
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/datacite/to_bibtex.yml +16 -16
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/datacite/to_citation.yml +16 -16
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/datacite/to_datacite.yml +16 -16
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/datacite/to_jats.yml +16 -16
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/datacite/to_schema_org.yml +16 -16
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/schema_org/default.yml +479 -946
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/schema_org/to_crossref_xml.yml +957 -1891
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/schema_org/to_datacite.yml +479 -946
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/schema_org/to_schema_org.yml +481 -950
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/encode/by_blog.yml +5540 -968
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/encode/by_blog_unknown_blog_id.yml +22 -29
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/encode/by_id.yml +25 -39
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/encode/by_id_unknown_uuid.yml +18 -28
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/find_from_format_by_id/crossref.yml +7 -7
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/find_from_format_by_id/datacite.yml +7 -7
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/find_from_format_by_id/jalc.yml +7 -7
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/find_from_format_by_id/kisti.yml +7 -7
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/find_from_format_by_id/medra.yml +7 -7
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/find_from_format_by_id/op.yml +7 -7
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/json_feed/json_feed_blog_id.yml +46 -0
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/json_feed/json_feed_by_blog.yml +5578 -246
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/json_feed/json_feed_not_indexed.yml +13 -2201
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/json_feed/json_feed_unregistered.yml +176 -72
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/change_metadata_as_datacite_xml/with_data_citation.yml +16 -16
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/crossref.yml +6 -6
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/datacite.yml +6 -6
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/jalc.yml +6 -6
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/kisti.yml +6 -6
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/medra.yml +6 -6
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/not_found.yml +6 -6
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/op.yml +6 -6
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/find_from_format_by_ID/crossref.yml +6 -6
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/find_from_format_by_ID/crossref_doi_not_url.yml +6 -6
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/find_from_format_by_ID/datacite.yml +6 -6
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/find_from_format_by_ID/datacite_doi_http.yml +6 -6
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/find_from_format_by_ID/unknown_DOI_registration_agency.yml +6 -6
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_blog_id_for_json_feed_item_id/by_blog_post_id.yml +27 -105
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_blog_id_for_json_feed_item_id/not_found.yml +20 -27
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_cff_metadata/cff-converter-python.yml +51 -25
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_cff_metadata/ruby-cff.yml +12 -12
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_cff_metadata/ruby-cff_repository_url.yml +9 -9
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_codemeta_metadata/maremma.yml +10 -10
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_codemeta_metadata/metadata_reports.yml +11 -11
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/DOI_with_ORCID_ID.yml +78 -78
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/DOI_with_SICI_DOI.yml +76 -76
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/DOI_with_data_citation.yml +35 -35
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/JaLC.yml +162 -162
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/KISTI.yml +131 -131
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/OP.yml +75 -75
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/affiliation_is_space.yml +76 -76
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/another_book.yml +113 -113
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/another_book_chapter.yml +74 -74
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/article_id_as_page_number.yml +77 -77
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/author_literal.yml +84 -84
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/book.yml +77 -77
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/book_chapter.yml +75 -75
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/book_chapter_with_RDF_for_container.yml +73 -73
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/book_oup.yml +72 -72
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/component.yml +94 -94
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/dataset.yml +104 -104
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/dataset_usda.yml +136 -136
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/date_in_future.yml +80 -80
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/dissertation.yml +103 -103
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/empty_given_name.yml +75 -75
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/invalid_date.yml +77 -77
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_article.yml +76 -76
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_article_original_language_title.yml +73 -73
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_article_with.yml +128 -210
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_article_with_RDF_for_container.yml +74 -74
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_article_with_funding.yml +76 -76
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_issue.yml +72 -72
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/mEDRA.yml +72 -72
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/markup.yml +81 -81
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/missing_contributor.yml +71 -71
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/multiple_issn.yml +75 -75
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/multiple_titles.yml +71 -71
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/multiple_titles_with_missing.yml +573 -573
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/not_found_error.yml +65 -65
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/peer_review.yml +77 -77
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/posted_content.yml +74 -74
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/posted_content_copernicus.yml +76 -76
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/report_osti.yml +120 -120
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/vor_with_url.yml +78 -78
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/yet_another_book.yml +74 -74
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/yet_another_book_chapter.yml +73 -73
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_raw/journal_article.yml +59 -59
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_datacite_metadata/SoftwareSourceCode.yml +4 -4
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_datacite_metadata/dissertation.yml +13 -13
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_datacite_metadata/funding_references.yml +15 -15
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_datacite_metadata/subject_scheme.yml +120 -120
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_doi_prefix_for_blog/by_blog_id.yml +5540 -555
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_doi_prefix_for_blog/by_blog_post_id.yml +31 -42
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_doi_prefix_for_blog/by_blog_post_id_specific_prefix.yml +25 -39
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed/by_blog_id.yml +5540 -247
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed/not_indexed_posts.yml +14 -26
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed/unregistered_posts.yml +176 -72
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/archived_wordpress_post.yml +27 -95
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/blog_post_with_non-url_id.yml +28 -106
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/blogger_post.yml +21 -65
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_author_name_suffix.yml +20 -208
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_doi.yml +26 -97
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_institutional_author.yml +24 -55
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_organizational_author.yml +27 -70
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_related_identifiers.yml +41 -143
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_related_identifiers_and_funding.yml +54 -132
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_related_identifiers_and_link_to_peer-reviewed_article.yml +304 -818
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_without_doi.yml +24 -169
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/jekyll_post.yml +24 -63
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/jekyll_post_with_anonymous_author.yml +25 -40
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/substack_post_with_broken_reference.yml +278 -591
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/syldavia_gazette_post_with_references.yml +59 -101
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/upstream_post_with_references.yml +135 -331
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/wordpress_post.yml +24 -134
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/wordpress_post_with_many_references.yml +578 -2967
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/wordpress_post_with_references.yml +44 -205
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/wordpress_post_with_tracking_code_on_url.yml +26 -160
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_one_author/affiliation_is_space.yml +21 -21
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_one_author/has_familyName.yml +15 -15
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_one_author/has_name_in_display-order_with_ORCID.yml +13 -13
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_one_author/name_with_affiliation_crossref.yml +16 -16
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_one_author/only_familyName_and_givenName.yml +66 -61
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/BlogPosting.yml +145 -146
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/BlogPosting_with_new_DOI.yml +149 -150
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/get_schema_org_metadata_front_matter/BlogPosting.yml +114 -115
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/harvard_dataverse.yml +300 -289
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/pangaea.yml +66 -61
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/upstream_blog.yml +64 -57
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/zenodo.yml +27 -24
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/handle_input/DOI_RA_not_Crossref_or_DataCite.yml +6 -6
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/handle_input/unknown_DOI_prefix.yml +6 -6
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/json_schema_errors/is_valid.yml +16 -16
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/BlogPosting.yml +10 -10
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/Dataset.yml +10 -10
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/authors_with_affiliations.yml +16 -16
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/climate_data.yml +10 -10
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/from_schema_org.yml +145 -146
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/keywords_subject_scheme.yml +8 -8
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/maremma.yml +12 -12
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/text.yml +8 -8
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/with_data_citation.yml +16 -16
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/with_pages.yml +16 -16
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_cff/Collection_of_Jupyter_notebooks.yml +13 -13
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_cff/SoftwareSourceCode_Zenodo.yml +13 -13
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_cff/SoftwareSourceCode_also_Zenodo.yml +8 -8
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_cff/ruby-cff.yml +10 -10
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/Dataset.yml +10 -10
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/Journal_article.yml +16 -16
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/Journal_article_vancouver_style.yml +21 -21
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/Missing_author.yml +15 -15
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/interactive_resource_without_dates.yml +8 -8
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/software_w/version.yml +8 -8
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_codemeta/SoftwareSourceCode_DataCite.yml +8 -8
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_codemeta/SoftwareSourceCode_DataCite_check_codemeta_v2.yml +8 -8
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_commonmeta/with_data_citation.yml +12 -12
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/another_schema_org_from_front-matter.yml +32 -32
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/journal_article.yml +5 -5
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/journal_article_from_datacite.yml +5 -5
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/journal_article_plos.yml +16 -16
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_from_rogue_scholar_with_anonymous_author.yml +25 -40
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_from_rogue_scholar_with_doi.yml +24 -134
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_from_rogue_scholar_with_organizational_author.yml +27 -70
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_from_rogue_scholar_with_relations.yml +41 -143
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_from_rogue_scholar_with_relations_and_funding.yml +55 -133
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_from_upstream_blog.yml +21 -224
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_with_references.yml +134 -330
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/posted_content.yml +19 -19
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/schema_org_from_another_science_blog.yml +9 -9
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/schema_org_from_front_matter.yml +92 -91
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/schema_org_from_upstream_blog.yml +6 -6
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/Another_dataset.yml +8 -8
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- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/Dataset.yml +10 -10
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- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csv/climate_data.yml +10 -10
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- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_schema_org/series_information.yml +17 -16
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of Dust</i> explores science, society, and human nature, focusing on genetics,
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science denial, and other political/social influences on scientific literacy.
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My main theme is <b><u>scientific explanation</u></b>.","favicon":null,"feed_format":"application/atom+xml","feed_url":"http://sfmatheson.blogspot.com/feeds/posts/default","filter":null,"funding":null,"generator":"Blogger
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early January 2023, a little before sunset in Tucson. Live image below, showing
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apparent earlier in the day) and my dinner preparations (shrimp and veggies
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on the grill)
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and taught in the <a href=\"https://meetings.cshl.edu/courses.aspx?course=C-WRITE&year=23\"
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target=\"_blank\">Scientific Writing Retreat at Cold Spring Harbor Laboratory</a>.
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I''m a writer and I need to write, if only for myself.</div><div><br /></div><div>2.
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chapters yet) and writing here will help me develop those thoughts. The idea
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is over twelve years old and has never faded away, which I take to mean that
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have other ideas kicking around in my head and most of them are worth writing
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about. I have one new intellectual passion that is totally worth writing about:
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<a href=\"https://skyislandalliance.org/the-sky-islands/\" target=\"_blank\">the
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Sky Islands</a> that nearly surround us here in Tucson.</div><div><br /></div><div>4.
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I have an exciting new job with great new people at <a href=\"https://plos.org/\"
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target=\"_blank\">an organization</a> that''s all in for <a href=\"https://plos.org/open-science/\"
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target=\"_blank\">open science</a>. I recently turned over the tens digit
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on my age-o-meter. My kids will very soon be all out of college. (One is about
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to start a postdoc!) All of this led, predictably, to a spasm of reflection
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on projects and vision. One clear result is that I''m feeling more inspired.<span><a
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name=\"more\"></a></span></div><div><br /></div><div>5. The demise of Twitter
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has led to a lot of <a href=\"https://www.theatlantic.com/technology/archive/2022/11/twitter-facebook-social-media-decline/672074/\"
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target=\"_blank\">useful commentary</a> about the nature of social media.
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I left Facebook two years ago and all but left Twitter two months ago. I''m
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on a <a href=\"https://fediscience.org/explore\" target=\"_blank\">good server
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at Mastodon</a> and I like it; maybe microblogging there can satisfy my desire
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for conversation and connection. But <a href=\"https://www.theverge.com/23513418/bring-back-personal-blogging\"
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target=\"_blank\">this recent piece</a> at <i>The Verge</i> by <a href=\"https://moniquejudge.com/\"
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target=\"_blank\">Monique Judge</a> convinced me that blogging could (again)
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have a place in the future.</div><div><br /><div>Here''s her summary, emphasis
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mine:</div><div><blockquote>At the end of the day, we don’t know what is going
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to happen next with Twitter or any of these platforms. We don’t know what
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changes <a href=\"https://www.techtarget.com/whatis/definition/Web-30\" target=\"_blank\">Web
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3.0</a> is going to bring to the internet. We do know that <b>we will all
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still be here, wanting to share our thoughts, talk about anything and everything,
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and commune with our people</b>. Personal blogging is the simplest and fastest
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way to do all of that. </blockquote></div><div>That''s what I want! A place
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to write, and (if I''m lucky) a place to discuss and \"commune\" with people.
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That used to happen a lot at <i>Quintessence of Dust</i>.<span></span></div></div></div><div><br
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/></div><div>Okay, but why here? This blog is over 15 years old and was started
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when I was a Christian believer. <a href=\"https://sfmatheson.blogspot.com/2007/08/kicking-off-my-blog.html\"
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target=\"_blank\">Its founding themes</a> were anchored in a desire to help
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Christians understand and enjoy biology, to help them shake free of misinformation
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and dishonesty. It has twice languished through long hiatuses and was <a href=\"https://sfmatheson.blogspot.com/p/about.html\"
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target=\"_blank\">remodeled</a> back in 2017 a few years after I deconverted.
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Maybe it''s time to start anew? I think not, for many of those same reasons:
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I''m still a biologist who loves science, still worried about misinformation,
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and still rooted in the power of scientific explanation. I''m still a bardolator
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and a Red Sox fan. <a href=\"https://sfmatheson.blogspot.com/p/about.html\">I''m
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still me</a>, and <i>Quintessence of Dust</i> is still my blog. The new <a
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href=\"https://sfmatheson.blogspot.com/p/about.html\" target=\"_blank\">About
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page</a> is slightly remodeled from 2017, and hints at the next post, which
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will outline some new goals and ongoing projects.</div><div><br /></div><div>A
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final note on inspiration, from Imani Perry, writing in her newsletter (<a
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href=\"https://newsletters.theatlantic.com/unsettled-territory/\" target=\"_blank\">Unsettled
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Territory</a>) at <i>The Atlantic</i>. The piece is \"<a href=\"https://newsletters.theatlantic.com/unsettled-territory/63af3facace609003751bacc/becoming-writer-habit-journalism/\"
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target=\"_blank\">Writing is a Democratic Art</a>.\" It''s for subscribers
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only but here is her challenge:</div><div><blockquote>Thinking and writing
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at a faster pace stretched me and gave me greater confidence. Sometimes I
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changed my mind about what I’d written a day later. But that was okay; a newsletter
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is a moment in time. Writing it each week gave me a lovely rhythm in what
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has otherwise been a difficult and disorienting season in history. Feeling
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stuck can get you stuck. But writing can, and should, inspire deeds.</blockquote></div>","published_at":1673233380,"updated_at":1680470227,"indexed_at":1689006804,"authors":[{"url":null,"name":"Stephen
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Matheson"}],"image":"https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEghgBx9BU21qMDFnLxgHmnsl6TQVfb3QCwOXrC1zcXq7WH9gN8E0TcH3pTslRBG6O8mb5gcuF9JVtDlJ2je6dFcfyzKE4OD38-ftr66nBxddo892_NkyuevrrX65ndSbwmXMaLh3F5yiqU1QIj8JtA8FLkKOcHOEVwVafz0rzh7PejbFzp3XT25nQxc/s320/Jan%207.jpg","tags":["Introduction"],"language":"en","reference":[],"relationships":[],"blog_id":"5764g49","blog_name":"Quintessence
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of Dust","blog_slug":"sfmatheson","blog":{"id":"5764g49","title":"Quintessence
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of Dust","description":"<i>Quintessence of Dust</i> explores science, society,
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and human nature, focusing on genetics, development, evolution, neuroscience,
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systems biology, and topics related to scientific literacy. I occasionally
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discuss intelligent design, creationism, science denial, and other political/social
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influences on scientific literacy. Additional topics: philosophy, baseball,
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on the grill).I''ve decided to start writing here at <i>Quintessence of Dust</i>,
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of Dust 2023 restart: the why","updated_at":1680470227,"url":"http://sfmatheson.blogspot.com/2023/01/quintessence-of-dust-2023-restart-why.html"}
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years and a million links","summary":"As trailed on a Twitter thread last
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names to their original descriptions in the taxonomic literature.","content_html":"<p>As
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trailed on a Twitter thread last week I’ve been working on a manuscript describing
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the efforts to map taxonomic names to their original descriptions in the taxonomic
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literature.</p>\n<blockquote><p>Putting together a manuscript on linking taxonomic
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names to the primary literature, basically “um, what, exactly, have you been
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doing all these years?”. TL;DR Across fungi, plants, and animals approx 1.3
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million names have been linked to a persistent identifier for a publication.</p>—
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Roderic Page (@rdmpage) <a href=\"https://twitter.com/rdmpage/status/1661714128413573120?ref_src=twsrc%5Etfw\">May
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25, 2023</a></blockquote> \n<p>The preprint is on bioRxiv <a href=\"https://doi.org/10.1101/2023.05.29.542697\">doi:10.1101/2023.05.29.542697</a></p>\n<blockquote>\n<p>A
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major gap in the biodiversity knowledge graph is a connection between taxonomic
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names and the taxonomic literature. While both names and publications often
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have persistent identifiers (PIDs), such as Life Science Identifiers (LSIDs)
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or Digital Object Identifiers (DOIs), LSIDs for names are rarely linked to
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DOIs for publications. This article describes efforts to make those connections
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across three large taxonomic databases: Index Fungorum, International Plant
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Names Index (IPNI), and the Index of Organism Names (ION). Over a million
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names have been matched to DOIs or other persistent identifiers for taxonomic
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publications. This represents approximately 36% of names for which publication
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data is available. The mappings between LSIDs and publication PIDs are made
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available through ChecklistBank. Applications of this mapping are discussed,
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including a web app to locate the citation of a taxonomic name, and a knowledge
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and publications to authors of those names.</p>\n</blockquote>\n<p>Much of
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the work has been linking taxa to names, which still has huge gaps. There
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are also interesting differences in coverage between plants, animals, and
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fungi (see preprint for details).</p>\n\n<div><a href=\"https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEhdWsSQhqi1DErXMIHm28g37-fiALNIsI5eQZmvoX_Fe03ZSwtKHbYt-LCsCCAUop0AGcwy_w7NpIjylVH1hNrM9oW-6j9e6tHASha49TTqFvDg2_tEx3r74RRFsjUo4M_Qat8NmKaZSChOt2hI3LsMjTVLrEVirEckU-9Ei7ug-7OHQlR4LA/s2276/animals-coverage.png\"><img
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/></a></div><div><a href=\"https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEjdyxlVJ-oyMCNPmHtHWjSxdxMSJvgzdWRGRF6Ad4dk7ab7gGDpuKdKmS9XhROkopw361ylfsTd1ZkwkF6BN0JlWNnVLCKY1AfryCfWKHkgPQM7u-0SELW9j8RlQIflb6ibaV64gwW7oJrEvOGECvR51F8EW8cRg-1usW-GBM5ymObj7zlObQ/s2276/fungi-coverage.png\"><img
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/></a></div><div><a href=\"https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEgf0YBuvNSXWAJTfQ1jk4XSocMzCYHP7t6IPUqhjQ3mftgM_850igWaD2copgNH6Xk6T62xBU641wvwOvXgCCDY3m2xC_gaILXO9RGx8H3Gpy5OOncsLb9smpT2LIgtYOExVBVdDRWqA0AZ8-mQjWL7dL5TiG7MqVu8spT8ACoGOPR_T36hRA/s2276/plants-coverage.png\"><img
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/></a></div>\n\n\nThere is also a simple app to demonstrate these links, see
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<a href=\"https://species-cite.herokuapp.com\">https://species-cite.herokuapp.com</a>.\n\n\n\n<blockquote>\n<p>Written
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with <a href=\"https://stackedit.io/\">StackEdit</a>.</p>\n</blockquote>","published_at":1685553960,"updated_at":1685554180,"indexed_at":1689933917,"authors":[{"url":"https://orcid.org/0000-0002-7101-9767","name":"Roderic
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raves (and occasionally considered opinions) on phyloinformatics, taxonomy,
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and biodiversity informatics. For more ranty and less considered opinions,
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see my <a href=\"https://twitter.com/rdmpage\">Twitter feed</a>.<br>ISSN 2051-8188.
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Written content on this site is licensed under a <a href=\"https://creativecommons.org/licenses/by/4.0/\">Creative
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programs that will help jumpstart their careers by exposing them to mentorship
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and opportunities to conduct research. While the gold standard of academic
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productivity (for the time being) remains peer-reviewed publications, conference
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posters and presentations are an important secondary metric.","content_html":"<p>Students
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and Design Experiments in Academic Surgery (I.D.E.A.S.)","favicon":"https://www.ideasurg.pub/favicon.png","feed_format":"application/rss+xml","feed_url":"https://www.ideasurg.pub/rss/","filter":null,"funding":null,"generator":"Ghost
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and residents aspiring for a career in academic surgery are looking for training
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programs that will help jumpstart their careers by exposing them to mentorship
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and opportunities to conduct research. While the gold standard of academic
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era the cost of conference attendance and travel are being re-evaluated. For
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now, academic conference participation can serve as an important albeit limited
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metric to evaluate an overall institution''s research power – especially as
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it relates to trainees.</p><p>The <a href=\"https://www.academicsurgicalcongress.org/?ref=ideasurg.pub\">Academic
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Surgical Congress</a> (ASC) is a joint surgical meeting co-hosted by the <a
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href=\"https://www.aasurg.org/?ref=ideasurg.pub\">Association for Academic
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Surgery</a> (AAS) and the <a href=\"https://www.susweb.org/?ref=ideasurg.pub\">Society
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for University Surgeons</a> (SUS) and held annually in February. Anecdotally,
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it is a popular conference for students and residents to attend. The ASC maintains
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a public archive of all abstracts dating from 2015-2020. We obtained a machine
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readable version of this public database through the webmaster (this version
|
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of the data spans 2016 to 2023). Using number of accepted abstracts as a surrogate
|
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for research productivity, we wanted to identify successful institutions.
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Conceivably, by finding institutions who achieved high abstract numbers, we
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could conduct interviews and focus groups among key stakeholders at these
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programs to understand what they did, and how these actions can be replicated.
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We were particularly interested in seeing which programs demonstrated a high
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number of absolute accepted abstracts within the study period and also which
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programs were able to improve their abstract performance from year to year.
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</p><p>For each abstract, we looked at the year and primary institution at
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which the work was conducted. In the dataset, all of the institutional affiliations
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for each author are combined in one text string. To figure out the primary
|
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institution, we searched the institution block string for the first presence
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of \"university\", \"hospital\", \"institute\", or \"medical center\" or the
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first expression to occur before a comma. This method was chosen as institutions’
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names are written variably (Department of Surgery, University Hospital, New
|
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York, NY vs. University Hospital, Division of Colorectal Surgery, Department
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of Surgery, New York, NY). Next, we found that for several abstracts belonging
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to the same institution in reality, the institution name was written in various
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ways (e.g. University of Alabama vs. University of Alabama - Birmingham or
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University of California - Los Angeles vs. David Geffen School of Medicine).
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We attempted fuzzy string matching as well as some manual corrections to improve
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this issue. While our efforts were not able to achieve perfect results, we
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were able to resolve a majority of the mismatches.</p><p>In order to do a
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primary survey of institutional trends in this dataset, we conducted the following
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analyses. First, we measured the number of abstracts accepted each year from
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2016 to 2023. Second, we looked at the number of accepted abstracts by institution
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over the entire study period and identified the top twenty institutions. Then,
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we looked at the number of abstract institutions by year for each of these
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top twenty institutions to study changes in institutional trends over time.
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Finally, we did a subset analysis on post-COVID data (2021 to 2023) to look
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at absolute and per cent year-over-year changes in accepted abstracts to see
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which institutions were able to significantly increase their abstract performance
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in one year. </p><h3>Accepted Abstracts are increasing but down from peak</h3><p>There
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were a total of 10,396 unique abstracts accepted at the Academic Surgical
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Congress between 2016 and 2023 for which complete institutional data is available.</p><p>We
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plotted the total number of abstracts accepted by year. The number of accepted
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abstracts increased from 1125 in 2016 to an all-time high of 1742 in 2020
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before declining to 922 and 848 in 2021 and 2022, respectively. Accepted abstracts
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have since rebounded to 1469 in 2023, or roughly 84% of the maximum amount.
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Of note, the 2021 and 2022 meetings were held virtually due to the COVID-19
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pandemic. Conversely the 2020 meeting was held immediately prior to the institution
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of lockdowns and other social distancing policies.</p><figure><img src=\"https://www.ideasurg.pub/content/images/2023/06/Frame-2-1.png\"
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loading=\"lazy\" width=\"2000\" height=\"1251\" srcset=\"https://www.ideasurg.pub/content/images/size/w600/2023/06/Frame-2-1.png
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600w, https://www.ideasurg.pub/content/images/size/w1000/2023/06/Frame-2-1.png
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1000w, https://www.ideasurg.pub/content/images/size/w1600/2023/06/Frame-2-1.png
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1600w, https://www.ideasurg.pub/content/images/size/w2400/2023/06/Frame-2-1.png
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2400w\" /><figcaption>Number of accepted abstracts at the Academic Surgical
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Congress by year from 2016-2023</figcaption></figure><h3>Alabama, Michigan
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lead abstract acceptances during study period</h3><p>Next, we plotted the
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total number of accepted abstracts by institution. The graph shows data for
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the twenty leading institutions. The University of Alabama and the University
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of Michigan lead in abstract acceptances during the study period (509 and
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382, respectively). Given an eight year time-range, the top twenty institutions
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reflect an average annual abstract acceptance ranging from roughly seventeen
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to 63.</p><figure><img src=\"https://www.ideasurg.pub/content/images/2023/06/Frame-1.png\"
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loading=\"lazy\" width=\"2000\" height=\"1061\" srcset=\"https://www.ideasurg.pub/content/images/size/w600/2023/06/Frame-1.png
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600w, https://www.ideasurg.pub/content/images/size/w1000/2023/06/Frame-1.png
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1000w, https://www.ideasurg.pub/content/images/size/w1600/2023/06/Frame-1.png
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1600w, https://www.ideasurg.pub/content/images/size/w2400/2023/06/Frame-1.png
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2400w\" /><figcaption>Number of accepted ASC abstracts for the top twenty
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institutions from 2016-2023</figcaption></figure><p>We also plotted the number
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of accepted abstracts by year using a separate line plot for each institution.
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The University of Alabama surged from 15 to 58 abstracts from 2016 and 2017,
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maintaining over 60 abstracts per year thereafter. The University of Michigan
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maintained between 30 and 60 abstracts for each year and has ranked in the
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top three for each year studied. Overall, there appears to be a general clustering
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of the remaining institutions.</p><p>Of note, there is a noticeable dip from
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2020 to 2022 seen at most institutions which starts to recover in 2023, consistent
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with the aggregated data shown in the previous figure.</p><figure><img src=\"https://www.ideasurg.pub/content/images/2023/06/Frame-3.png\"
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loading=\"lazy\" width=\"2000\" height=\"1359\" srcset=\"https://www.ideasurg.pub/content/images/size/w600/2023/06/Frame-3.png
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600w, https://www.ideasurg.pub/content/images/size/w1000/2023/06/Frame-3.png
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1000w, https://www.ideasurg.pub/content/images/size/w1600/2023/06/Frame-3.png
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1600w, https://www.ideasurg.pub/content/images/size/w2400/2023/06/Frame-3.png
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2400w\" /></figure><h3>MGH, Brigham lead absolute and per cent increase in
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abstracts in 2023</h3><p>Next, we measured the absolute and percent change
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between accepted abstracts in consecutive years for the top twenty institutions.
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We restricted our analysis to 2021, 2022, and 2023. The greatest absolute
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increases in accepted abstracts came from Massachusetts General Hospital in
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2023 (28), The University of Pennsylvania (17), and Brigham and Women''s Hospital
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(15), all in 2023. The greatest percentage increases in accepted abstracts
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came from Brigham and Women''s Hospital (500%), Massachusetts General Hospital
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(400%), and Yale Univeristy (275%), also all in 2023. Interestingly, University
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of Alabama (+0 in 2022, +5 in 2023) and University of Michigan (+5 in 2022,
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+8 in 2023) - which rank at the top in all time and yearly abstracts - experienced
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less extreme swings during the 2021-2023 time period. The greatest year-over-year
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increase in the study period was University of Alabama''s increase of 43 abstracts
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in 2017, but as it falls outside the time range of this subset analysis, that
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data is not shown here.</p><figure><img src=\"https://www.ideasurg.pub/content/images/2023/06/Frame-4--5-.png\"
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loading=\"lazy\" width=\"2000\" height=\"903\" srcset=\"https://www.ideasurg.pub/content/images/size/w600/2023/06/Frame-4--5-.png
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600w, https://www.ideasurg.pub/content/images/size/w1000/2023/06/Frame-4--5-.png
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1000w, https://www.ideasurg.pub/content/images/size/w1600/2023/06/Frame-4--5-.png
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1600w, https://www.ideasurg.pub/content/images/size/w2400/2023/06/Frame-4--5-.png
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2400w\" /><figcaption>Year-over-year absolute change in ASC accepted abstracts
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from 2021-2023</figcaption></figure><figure><img src=\"https://www.ideasurg.pub/content/images/2023/06/Frame-5--9-.png\"
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loading=\"lazy\" width=\"2000\" height=\"884\" srcset=\"https://www.ideasurg.pub/content/images/size/w600/2023/06/Frame-5--9-.png
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600w, https://www.ideasurg.pub/content/images/size/w1000/2023/06/Frame-5--9-.png
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1000w, https://www.ideasurg.pub/content/images/size/w1600/2023/06/Frame-5--9-.png
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1600w, https://www.ideasurg.pub/content/images/size/w2400/2023/06/Frame-5--9-.png
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2400w\" /><figcaption>Year-over-year percent change in ASC accepted abstracts
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from 2021-2023</figcaption></figure><h3>Conclusions</h3><p>In this data exploration,
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we analyzed abstract acceptance data for the Academic Surgical Congress between
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2016 and 2023. We showed that the number of abstracts increased from 2016
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to 2020, dipped in 2021 and 2022, and is recovering in 2023 - likely reflecting
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the variability forced by COVID19 and the transition to virtual conferences
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in 2021 and 2022. We also showed that the University of Alabama and the University
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of Michigan have significantly led accepted abstracts throughout the study
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period with University of Alabama maintaining a top position following an
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impressive 287% percent increase in abstracts between 2016 and 2017. In 2023,
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Massachusetts General Hospital and Brigham and Women''s Hospital rank in the
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top three for both absolute and percent changes in year-over-year abstract
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acceptances in 2023. </p><h3>Limitations and Future Directions</h3><p>This
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data exploration has several limitations. First, our study is limited to one
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conference, and conferences themselves are only a limited component of academic
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productivity. However, the Academic Surgical Congress is an international
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meeting that is well regarded, popular among trainees, and has consistent
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multi-year data. We can improve the generalizability of our findings by bringing
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in similar data from other large meetings – such as the American College of
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Surgeons Clinical Congress and the Society of American Gastrointestinal and
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Endoscopic Surgeons (SAGES). We can also use the PubMed API to perform similar
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analyses in top surgical journals such as JAMA Surgery or the Annals of Surgery.</p><p>Furthermore,
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there is renewed concern that the <a href=\"https://jamanetwork.com/journals/jamasurgery/article-abstract/2797087?ref=ideasurg.pub\">ever-increasing
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number</a> of abstracts and papers required for trainees to progress academically
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is leading to an unhealthy \"research treadmill\". While these concerns are
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valid, research productivity remains an important component of academic development,
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and number of abstract acceptances can serve as a meaningful metric in guaging
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an institution''s research productivity and culture.</p><p>Another limitation
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of our study is our assumption that the first institution listed in the author
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block is the primary institution–a method which does not take into account
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multi-institutional abstracts. However, we suspect this reflects the minority
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of the abstracts. Finally, we have not fully optimized name-matching to correctly
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combine terms like \"University of Alabama\" and \"University of Alabama Birmingham\".
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One future direction to improve this analysis would be to optimize the fuzzy
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string matching algorithm used in our code. Alternatively, more granular source
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data could also help improve the accuracy of our findings.</p><p>With regards
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to the data we have obtained, we can conduct survey-based studies or focus
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groups with key stakeholders from institutions that have demonstrated strong
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abstract performance during the study period as well as those who have shown
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significant improvement. By talking to department chairs, program directors,
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and research and education leaders we can understand what steps each institution
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took to improve abstract acceptance (e.g. hiring a new research faculty, creating
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a mentorship program, providing administrative support for IRBs/stats etc.).
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Following this, we can map individual interventions to improvements to understand
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the contribution that each can have on increased academic productivity.</p><p>We
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have also not yet mined the abstract text itself for themes. Using natural
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language processing, we can understand how themes and trends of emergent research
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change from year to year, and even develop models to predict which topics
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will be of interest in future works. This will likely be the subject of a
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future data exploration.</p><p>Overall, we hope to demonstrate that abstract
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acceptance data from a single international meeting can provide interesting,
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meaningful data on which programs have strong research infrastructure and
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which programs are making strides to achieve it. By studying this data and
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improving the inputs, we can better understand whose example to follow and
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ultimately develop a playbook that all institutions can employ to maximize
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the academic opportunities of students and trainees.</p><h3>See the Data</h3><p>You
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can see the raw data as well as all of our code <a href=\"https://deepnote.com/@tejas-sathe-a73f/ASC-Data-Exploration-948ca211-bfc7-459b-9d6d-ef952a5baf32?ref=ideasurg.pub\">here</a>,
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and use this for your own studies with appropriate attribution.</p><h3>Acknowledgements</h3><p>Special
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thanks to Ojas Sathe for assistance with the fuzzy string matching</p>","published_at":1685768070,"updated_at":1685768070,"indexed_at":1690923223,"authors":[{"url":"https://orcid.org/0000-0003-0449-4469","name":"Tejas
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S. Sathe"}],"image":"https://www.ideasurg.pub/content/images/2023/06/Frame-2-1.png","tags":["Preprint"],"language":"en","reference":[],"relationships":[],"blog_id":"3cxcm20","blog_name":"I.D.E.A.S.","blog_slug":"ideas","blog":{"id":"3cxcm20","title":"I.D.E.A.S.","description":"Innovation
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and Design Experiments in Academic Surgery (I.D.E.A.S.)","language":"en","favicon":"https://www.ideasurg.pub/favicon.png","feed_url":"https://www.ideasurg.pub/rss/","home_page_url":"https://www.ideasurg.pub","user_id":"4cecb4b8-58b5-49fe-9edb-6af638294ef5","created_at":"2023-01-04","feed_format":"application/rss+xml","license":"https://creativecommons.org/licenses/by/4.0/legalcode","generator":"Ghost
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5.61","category":"clinicalMedicine","prefix":"10.59350","modified_at":"2023-07-29T22:28:28+00:00","version":"https://jsonfeed.org/version/1.1","current_feed_url":null,"status":"active","issn":"2993-1150","backlog":0,"authors":null,"plan":"Starter","slug":"ideas","use_mastodon":false}}'
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recorded_at: Wed, 06 Sep 2023 14:27:25 GMT
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posters and presentations are an important secondary metric.","tags":["Preprint"],"title":"How
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to Build an Academic Powerhouse: Let''s Study Who''s Doing it","updated_at":1685768070,"url":"https://www.ideasurg.pub/academic-powerhouse"}
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'
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recorded_at: Thu, 05 Oct 2023 20:37:41 GMT
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recorded_with: VCR 6.2.0
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