commonmeta-ruby 3.5.4 → 3.6

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (275) hide show
  1. checksums.yaml +4 -4
  2. data/Gemfile.lock +16 -5
  3. data/bin/commonmeta +1 -1
  4. data/lib/commonmeta/readers/crossref_xml_reader.rb +1 -1
  5. data/lib/commonmeta/utils.rb +6 -6
  6. data/lib/commonmeta/version.rb +1 -1
  7. data/spec/cli_spec.rb +13 -8
  8. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref/default.yml +13 -13
  9. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref/to_bibtex.yml +13 -13
  10. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref/to_crossref_xml.yml +25 -25
  11. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref/to_datacite.yml +13 -13
  12. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref/to_schema_org.yml +13 -13
  13. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref_xml/default.yml +7 -7
  14. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref_xml/to_bibtex.yml +7 -7
  15. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref_xml/to_crossref_xml.yml +7 -59
  16. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref_xml/to_datacite.yml +7 -7
  17. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_file/crossref_xml/to_schema_org.yml +7 -7
  18. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/crossref/default.yml +24 -24
  19. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/crossref/to_bibtex.yml +24 -24
  20. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/crossref/to_citation.yml +24 -24
  21. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/crossref/to_crossref_xml.yml +24 -24
  22. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/crossref/to_datacite.yml +24 -24
  23. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/crossref/to_jats.yml +24 -24
  24. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/crossref/to_schema_org.yml +24 -24
  25. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/datacite/default.yml +16 -16
  26. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/datacite/to_bibtex.yml +16 -16
  27. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/datacite/to_citation.yml +16 -16
  28. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/datacite/to_datacite.yml +16 -16
  29. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/datacite/to_jats.yml +16 -16
  30. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/datacite/to_schema_org.yml +16 -16
  31. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/schema_org/default.yml +479 -946
  32. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/schema_org/to_crossref_xml.yml +957 -1891
  33. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/schema_org/to_datacite.yml +479 -946
  34. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/convert_from_id/schema_org/to_schema_org.yml +481 -950
  35. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/encode/by_blog.yml +5540 -968
  36. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/encode/by_blog_unknown_blog_id.yml +22 -29
  37. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/encode/by_id.yml +25 -39
  38. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/encode/by_id_unknown_uuid.yml +18 -28
  39. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/find_from_format_by_id/crossref.yml +7 -7
  40. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/find_from_format_by_id/datacite.yml +7 -7
  41. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/find_from_format_by_id/jalc.yml +7 -7
  42. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/find_from_format_by_id/kisti.yml +7 -7
  43. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/find_from_format_by_id/medra.yml +7 -7
  44. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/find_from_format_by_id/op.yml +7 -7
  45. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/json_feed/json_feed_blog_id.yml +46 -0
  46. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/json_feed/json_feed_by_blog.yml +5578 -246
  47. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/json_feed/json_feed_not_indexed.yml +13 -2201
  48. data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/json_feed/json_feed_unregistered.yml +176 -72
  49. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/change_metadata_as_datacite_xml/with_data_citation.yml +16 -16
  50. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/crossref.yml +6 -6
  51. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/datacite.yml +6 -6
  52. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/jalc.yml +6 -6
  53. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/kisti.yml +6 -6
  54. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/medra.yml +6 -6
  55. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/not_found.yml +6 -6
  56. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/op.yml +6 -6
  57. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/find_from_format_by_ID/crossref.yml +6 -6
  58. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/find_from_format_by_ID/crossref_doi_not_url.yml +6 -6
  59. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/find_from_format_by_ID/datacite.yml +6 -6
  60. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/find_from_format_by_ID/datacite_doi_http.yml +6 -6
  61. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/find_from_format_by_ID/unknown_DOI_registration_agency.yml +6 -6
  62. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_blog_id_for_json_feed_item_id/by_blog_post_id.yml +27 -105
  63. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_blog_id_for_json_feed_item_id/not_found.yml +20 -27
  64. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_cff_metadata/cff-converter-python.yml +51 -25
  65. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_cff_metadata/ruby-cff.yml +12 -12
  66. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_cff_metadata/ruby-cff_repository_url.yml +9 -9
  67. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_codemeta_metadata/maremma.yml +10 -10
  68. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_codemeta_metadata/metadata_reports.yml +11 -11
  69. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/DOI_with_ORCID_ID.yml +78 -78
  70. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/DOI_with_SICI_DOI.yml +76 -76
  71. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/DOI_with_data_citation.yml +35 -35
  72. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/JaLC.yml +162 -162
  73. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/KISTI.yml +131 -131
  74. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/OP.yml +75 -75
  75. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/affiliation_is_space.yml +76 -76
  76. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/another_book.yml +113 -113
  77. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/another_book_chapter.yml +74 -74
  78. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/article_id_as_page_number.yml +77 -77
  79. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/author_literal.yml +84 -84
  80. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/book.yml +77 -77
  81. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/book_chapter.yml +75 -75
  82. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/book_chapter_with_RDF_for_container.yml +73 -73
  83. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/book_oup.yml +72 -72
  84. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/component.yml +94 -94
  85. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/dataset.yml +104 -104
  86. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/dataset_usda.yml +136 -136
  87. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/date_in_future.yml +80 -80
  88. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/dissertation.yml +103 -103
  89. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/empty_given_name.yml +75 -75
  90. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/invalid_date.yml +77 -77
  91. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_article.yml +76 -76
  92. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_article_original_language_title.yml +73 -73
  93. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_article_with.yml +128 -210
  94. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_article_with_RDF_for_container.yml +74 -74
  95. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_article_with_funding.yml +76 -76
  96. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_issue.yml +72 -72
  97. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/mEDRA.yml +72 -72
  98. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/markup.yml +81 -81
  99. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/missing_contributor.yml +71 -71
  100. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/multiple_issn.yml +75 -75
  101. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/multiple_titles.yml +71 -71
  102. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/multiple_titles_with_missing.yml +573 -573
  103. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/not_found_error.yml +65 -65
  104. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/peer_review.yml +77 -77
  105. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/posted_content.yml +74 -74
  106. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/posted_content_copernicus.yml +76 -76
  107. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/report_osti.yml +120 -120
  108. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/vor_with_url.yml +78 -78
  109. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/yet_another_book.yml +74 -74
  110. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/yet_another_book_chapter.yml +73 -73
  111. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_raw/journal_article.yml +59 -59
  112. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_datacite_metadata/SoftwareSourceCode.yml +4 -4
  113. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_datacite_metadata/dissertation.yml +13 -13
  114. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_datacite_metadata/funding_references.yml +15 -15
  115. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_datacite_metadata/subject_scheme.yml +120 -120
  116. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_doi_prefix_for_blog/by_blog_id.yml +5540 -555
  117. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_doi_prefix_for_blog/by_blog_post_id.yml +31 -42
  118. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_doi_prefix_for_blog/by_blog_post_id_specific_prefix.yml +25 -39
  119. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed/by_blog_id.yml +5540 -247
  120. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed/not_indexed_posts.yml +14 -26
  121. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed/unregistered_posts.yml +176 -72
  122. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/archived_wordpress_post.yml +27 -95
  123. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/blog_post_with_non-url_id.yml +28 -106
  124. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/blogger_post.yml +21 -65
  125. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_author_name_suffix.yml +20 -208
  126. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_doi.yml +26 -97
  127. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_institutional_author.yml +24 -55
  128. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_organizational_author.yml +27 -70
  129. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_related_identifiers.yml +41 -143
  130. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_related_identifiers_and_funding.yml +54 -132
  131. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_related_identifiers_and_link_to_peer-reviewed_article.yml +304 -818
  132. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_without_doi.yml +24 -169
  133. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/jekyll_post.yml +24 -63
  134. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/jekyll_post_with_anonymous_author.yml +25 -40
  135. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/substack_post_with_broken_reference.yml +278 -591
  136. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/syldavia_gazette_post_with_references.yml +59 -101
  137. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/upstream_post_with_references.yml +135 -331
  138. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/wordpress_post.yml +24 -134
  139. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/wordpress_post_with_many_references.yml +578 -2967
  140. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/wordpress_post_with_references.yml +44 -205
  141. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/wordpress_post_with_tracking_code_on_url.yml +26 -160
  142. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_one_author/affiliation_is_space.yml +21 -21
  143. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_one_author/has_familyName.yml +15 -15
  144. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_one_author/has_name_in_display-order_with_ORCID.yml +13 -13
  145. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_one_author/name_with_affiliation_crossref.yml +16 -16
  146. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_one_author/only_familyName_and_givenName.yml +66 -61
  147. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/BlogPosting.yml +145 -146
  148. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/BlogPosting_with_new_DOI.yml +149 -150
  149. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/get_schema_org_metadata_front_matter/BlogPosting.yml +114 -115
  150. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/harvard_dataverse.yml +300 -289
  151. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/pangaea.yml +66 -61
  152. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/upstream_blog.yml +64 -57
  153. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/zenodo.yml +27 -24
  154. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/handle_input/DOI_RA_not_Crossref_or_DataCite.yml +6 -6
  155. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/handle_input/unknown_DOI_prefix.yml +6 -6
  156. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/json_schema_errors/is_valid.yml +16 -16
  157. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/BlogPosting.yml +10 -10
  158. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/Dataset.yml +10 -10
  159. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/authors_with_affiliations.yml +16 -16
  160. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/climate_data.yml +10 -10
  161. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/from_schema_org.yml +145 -146
  162. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/keywords_subject_scheme.yml +8 -8
  163. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/maremma.yml +12 -12
  164. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/text.yml +8 -8
  165. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/with_data_citation.yml +16 -16
  166. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/with_pages.yml +16 -16
  167. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_cff/Collection_of_Jupyter_notebooks.yml +13 -13
  168. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_cff/SoftwareSourceCode_Zenodo.yml +13 -13
  169. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_cff/SoftwareSourceCode_also_Zenodo.yml +8 -8
  170. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_cff/ruby-cff.yml +10 -10
  171. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/Dataset.yml +10 -10
  172. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/Journal_article.yml +16 -16
  173. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/Journal_article_vancouver_style.yml +21 -21
  174. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/Missing_author.yml +15 -15
  175. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/interactive_resource_without_dates.yml +8 -8
  176. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/software_w/version.yml +8 -8
  177. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_codemeta/SoftwareSourceCode_DataCite.yml +8 -8
  178. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_codemeta/SoftwareSourceCode_DataCite_check_codemeta_v2.yml +8 -8
  179. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_commonmeta/with_data_citation.yml +12 -12
  180. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/another_schema_org_from_front-matter.yml +32 -32
  181. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/journal_article.yml +5 -5
  182. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/journal_article_from_datacite.yml +5 -5
  183. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/journal_article_plos.yml +16 -16
  184. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_from_rogue_scholar_with_anonymous_author.yml +25 -40
  185. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_from_rogue_scholar_with_doi.yml +24 -134
  186. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_from_rogue_scholar_with_organizational_author.yml +27 -70
  187. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_from_rogue_scholar_with_relations.yml +41 -143
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- Initial Scholarly AI Taxonomy","summary":"Although advances in artificial
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- intelligence (AI)1 have been unfolding for over decades, the progress in the
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- last six months has come faster than anyone expected. The public release of
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- ChatGPT in November 2022, in particular, has opened up new possibilities and
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- heightened awareness of AI''s potential role in various aspects of our work
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- and life.It follows that in the context of the publishing industry, AI also
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- holds the promise of transforming multiple facets of the publishing process2.
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- In this...","date_published":"2023-04-11T08:00:34Z","date_modified":"2023-04-11T15:29:38Z","date_indexed":"1970-01-01T00:00:00+00:00","authors":[{"url":null,"name":"Adam
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- Hyde"},{"url":"https://orcid.org/0000-0002-7378-2408","name":"John Chodacki"},{"url":null,"name":"Paul
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- Shannon"}],"image":"https://upstream.force11.org/content/images/2023/04/1-1.png","content_html":"
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- <!--kg-card-begin: html--><p class=''u-drop-cap-small''>Although advances
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- in artificial intelligence (AI)<sup>1</sup> have been unfolding for over decades,
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- the progress in the last six months has come faster than anyone expected.
61
- The public release of ChatGPT in November 2022, in particular, has opened
62
- up new possibilities and heightened awareness of AI''s potential role in various
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- aspects of our work and life.</p><!--kg-card-end: html--><!--kg-card-begin:
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- html--><p>It follows that in the context of the publishing industry, AI also
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- holds the promise of transforming multiple facets of the publishing process<sup>2</sup>.
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- In this blog post, we begin the development of a rough taxonomy for understanding
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- how and where AI can and/or should play a role in a publisher’s workflow.</p><!--kg-card-end:
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- html--><p>We intend to iterate on this taxonomy (for now, we will use the
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- working title ‘Scholarly AI Taxonomy’).</p><h2 id=\"scholarly-ai-taxonomy\">Scholarly
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- AI Taxonomy</h2><p>To kickstart discussions on AI''s potential impact on publishing
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- workflows, we present our initial categorization of the \"Scholarly AI Taxonomy.\"
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- This taxonomy outlines seven key roles that AI could potentially play in a
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- scholarly publishing workflow:</p><ol><li><strong>Extract</strong>: Identify
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- and isolate specific entities or data points within the content.</li><li><strong>Validate</strong>:
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- Verify the accuracy and reliability of the information.</li><li><strong>Generate</strong>:
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- Produce new content or ideas, such as text or images.</li><li><strong>Analyse</strong>:
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- Examine patterns, relationships, or trends within the information.</li><li><strong>Reformat</strong>:
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- Modify and adjust information to fit specific formats or presentation styles.</li><li><strong>Discover</strong>:
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- Search for and locate relevant information or connections.</li><li><strong>Translate</strong>:
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- Convert information from one language or form to another.</li></ol><p>The
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- above is the first pass at a taxonomy. To flesh out these further, we have
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- provided examples to illustrate each category further. </p><p>We thoroughly
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- recognise that some of the examples below, when further examined, may be miscategorized.
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- Further, we recognise that some examples could be illustrations of several
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- of these categories at play at once and don’t sit easily within just one of
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- the items listed. We also acknowledge that the categories themselves will
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- need thorough discussion and revision going forward. However, we hope that
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- this initial taxonomy can play a role in helping the community understand
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- what AI could mean for publishing processes.</p><p>Also note, in the examples
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- we are not making any assertions about the accuracy of AI when performing
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- these tasks. There are a lot of discussions already on whether the current
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- state of AI tools can do the following activities <em>well</em>. We are not
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- debating that aspect of the community discussion; that is for publishers and
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- technologists to explore further as the technology progresses and as we all
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- gain experience using these tools. </p><p>These categories are only proposed
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- as a way of understanding the <em>types of contributions</em> AI tools can
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- make. That being said, some of the below examples are more provocative than
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- others in an attempt to help the reader examine what they think <em>and feel</em>
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- about these possibilities.</p><h2 id=\"initial-categorization\">Initial categorization</h2><p>Our
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- initial seven categories are detailed further below.</p><h3 id=\"1-extractidentify-and-isolate-specific-entities-or-data-points-within-the-content\">1.
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- Extract - <em>Identify and isolate specific entities or data points within
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- the content</em></h3><p>In the extraction stage, AI-powered tools can significantly
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- streamline the process of identifying and extracting relevant information
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- from content and datasets. However, an over-reliance on AI for this task can
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- lead to errors if the models are not well-tuned or lack the necessary context
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- to identify entities accurately. Some speculative examples:</p><ol><li>Identifying
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- author names and affiliations from a submitted manuscript to pre-fill forms
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- and save time during submission while increasing the accuracy of the input.</li><li>Extracting
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- key terms and phrases for indexing purposes.</li><li>Isolating figures and
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- tables from a research article for separate processing.</li><li>Extracting
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- metadata, such as title, abstract, and keywords, from a document.</li><li>Identifying
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- citations within a text for reference management.</li></ol><h3 id=\"2-validateverify-the-accuracy-and-reliability-of-the-information\">2.
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- Validate - <em>Verify the accuracy and reliability of the information</em></h3><p>AI-based
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- systems can validate information by cross-referencing data against reliable
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- sources or expected structures, ensuring content conformity, accuracy and/or
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- credibility. While this can reduce human error, it is essential to maintain
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- a level of human oversight, as AI models may not always detect nuances in
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- language or identify reliable sources. Some examples:</p><ol><li>Cross-referencing
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- citations to ensure accuracy and proper formatting.</li><li>Verifying author
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- affiliations against an established database.</li><li>Ensuring proper image
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- attribution and permissions.</li><li>Checking factual information in an article
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- against trusted sources.</li><li>Validating claims made in a scientific paper
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- against previous studies.</li></ol><h3 id=\"3-generateproduce-new-content-or-ideas-such-as-text-or-images\">3.
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- Generate - <em>Produce new content or ideas, such as text or images</em></h3><p>AI
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- can create high-quality text and images, saving time and effort for authors
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- and editors. However, the content generated by AI may contain factual inaccuracies,
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- lack creativity, or inadvertently reproduce biases present in the training
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- data, necessitating human intervention to ensure accuracy, quality, originality,
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- and adherence to ethical guidelines. Some examples:</p><ol><li>Generating
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- social media content (e.g., summarising longer text to a tweetable length)
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- or promotional content for a new publication.</li><li>Creating keyword lists
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- for search engine optimization (SEO).</li><li>Automatically generating an
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- abstract or summary of a manuscript, particularly a plain language summary
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- pitched at a certain audience.</li><li>Creating a list of suggested article
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- titles based on the content and target audience.</li><li>Producing visually
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- engaging charts or graphs from raw data.</li></ol><h3 id=\"4-analyseexamine-patterns-relationships-or-trends-within-the-information\">4.
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- Analyse - <em>Examine patterns, relationships, or trends within the information</em></h3><p>AI-driven
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- data analytics tools can help publishers extract valuable insights from their
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- content, identifying patterns and trends to optimize content strategy. While
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- AI can provide essential information, over-reliance on AI analytics may lead
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- to overlooking important context or misinterpreting data, requiring human
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- analysts to interpret findings accurately. Some examples:</p><ol><li>Analyse
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- an image to create accessible text descriptions.</li><li>Determining the sentiment
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- of reviews.</li><li>Identifying trending topics in a specific field to guide
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- editorial direction.</li><li>Analyzing the readability level of a manuscript.</li><li>Discovering
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- patterns in citation networks to identify influential articles and authors.</li></ol><h3
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- id=\"5-reformatmodify-and-adjust-information-to-fit-specific-formats-or-presentation-styles\">5.
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- Reformat - <em>Modify and adjust information to fit specific formats or presentation
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- styles</em></h3><p>AI can reformat content for specific media channels or
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- alternative structures, enhancing user experience and accessibility. However,
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- AI-generated formatting may not always be ideal or adhere to specific style
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- guidelines, requiring human editors to fine-tune the formatting. Some examples:</p><ol><li>Formatting
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- content to comply with a specific style guide.</li><li>Adapting a long-form
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- article for a shorter, mobile-friendly version.</li><li>Converting a manuscript
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- into XML or converting datasets to open formats.</li><li>Rearranging content
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- to fit different print and digital formats.</li><li>Adjusting images and graphics
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- for optimal display across various devices.</li></ol><h3 id=\"6-discoversearch-for-and-locate-relevant-information-or-connections\">6.
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- Discover - <em>Search for and locate relevant information or connections</em></h3><p>AI
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- can efficiently find and link information about a subject, streamlining the
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- research process. However, AI-driven information discovery may yield irrelevant,
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- incorrect, or outdated results, necessitating human verification and filtering
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- to ensure accuracy and usefulness. Some examples:</p><ol><li>Finding relevant
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- articles within a publisher’s corpus to recommend for further reading.</li><li>Identifying
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- potential reviewers for a submitted manuscript based on their expertise.</li><li>Discovering
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- trending topics for a call for papers.</li><li>Locating similar works to provide
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- context for a piece of content.</li><li>Searching for related images or multimedia
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- to accompany a text.</li></ol><h3 id=\"7-translateconvert-information-from-one-language-or-form-to-another\">7.
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- Translate - <em>Convert information from one language or form to another</em></h3><p>AI
169
- can quickly translate languages and sentiments, making content more accessible
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- and understandable to diverse audiences. However, AI translations can sometimes
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- be inaccurate or lose nuances in meaning, especially when dealing with idiomatic
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- expressions or cultural context, necessitating the involvement of human translators
173
- for sensitive or complex content. Some examples:</p><ol><li>Translating a
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- research article or book into another language.</li><li>Converting scientific
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- jargon into more accessible language for a popular science article.</li><li>Adapting
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- a text''s cultural references to be more understandable for a global readership.</li><li>Translating
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- the sentiment of a text.</li><li>Converting spoken language into written transcripts
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- (or vice versa) for interviews or podcasts.</li></ol><h2 id=\"balancing-ai-and-human-intervention-in-publishing-workflows\">Balancing
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- AI and Human Intervention in Publishing Workflows</h2><p>There is potential
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- for AI to benefit publishing workflows. Still, it''s crucial to identify where
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- AI should play a role and when human intervention is required to check and
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- validate outcomes of assisted technology. In many ways, this is no different
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- to how publishing works today. If there is one thing publishers do well, and
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- sometimes to exaggerated fidelity, it is quality assurance.</p><p>However,
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- AI tools offer several new dimensions which can bring machine assistance into
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- many more parts of the process at a much larger scale. This, together with
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- the feeling we have that AI is, in fact, in some ways ‘doing work previously
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- considered to be the sole realm of the sentient’ and the need for people and
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- AI machines to ‘learn together’ so those outcomes can improve, means there
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- is both factual and emotional requirements to scope, monitor, and check these
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- outcomes.</p><p>Consequently, workflow platforms must be designed with interfaces
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- allowing seamless ‘Human QA’ at appropriate points in the process. These interfaces
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- should enable publishers to review, edit, and approve AI-generated content
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- or insights, ensuring that the final product meets the required standards
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- and ethical guidelines. Where possible, the ‘Human QA’ should feed back into
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- the AI processes to improve future outcomes; this also needs to be considered
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- by tool builders.</p><p>To accommodate this ''Human QA'', new types of interfaces
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- will need to be developed in publishing tools. These interfaces should facilitate
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- easy interaction between human users and AI-generated content, allowing for
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- necessary reviews and modifications. For instance, a journal workflow platform
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- might offer a feature where users are asked to ''greenlight'' a pre-selected
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- option from a drop-down menu (e.g., institutional affiliation), generated
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- by AI. This way, researchers and editors can quickly validate AI-generated
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- suggestions while providing feedback to improve the AI''s performance over
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- time. Integrating such interfaces not only ensures that the content adheres
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- to the desired quality standards and ethical principles but also expedites
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- the publishing process, making it more efficient.</p><h2 id=\"the-speed-of-trust\">The
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- Speed of Trust</h2><p>Trust plays a large role in this process. As we learn
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- more about the fidelity and accuracy of these systems and confront what AI
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- processes can and can’t do well to date, we will need to move forward with
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- building AI into workflows ''at the speed of trust.''</p><p>Adopting a \"speed
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- of trust\" approach means being cautious yet open to AI''s potential in transforming
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- publishing workflows. It involves engaging in honest conversations about AI''s
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- capabilities and addressing concerns, all while striking a balance between
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- innovation and desirable community standards. As we navigate this delicate
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- balance, we create an environment where AI technology can grow and adapt to
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- better serve the publishing community.</p><p>For example, as a start, when
218
- integrating AI into publishing workflows, we believe it is essential to provide
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- an ‘opt-in’ and transparent approach to AI contributions. Publishers and authors
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- should be informed about the extent of AI involvement and its limitations,
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- and presented with interfaces allowing them to make informed decisions about
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- when and how AI will be used. This transparent ‘opt-in’ approach helps build
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- trust, allows us to iterate forward as we gain more experience, and sets the
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- stage for discussions and practices regarding ethical AI integration in publishing
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- workflows.</p><h2 id=\"conclusion\">Conclusion</h2><p>The potential of AI
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- in publishing workflows is immense, and we find ourselves at a time when the
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- technology has taken a significant step forward. But it''s essential to approach
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- its integration with a balanced perspective. We can harness the power of AI
229
- while adhering to ethical standards and delivering high-quality content by
230
- considering both the benefits and drawbacks of AI, identifying areas for human
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- intervention, maintaining transparency, and evolving our understanding of
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- AI contributions.</p><p>This initial taxonomy outlined in this article can
233
- serve as a starting point for understanding how AI can contribute to publishing
234
- workflows. By quantifying AI contributions in this way, we can also discuss
235
- the ethical boundaries of AI-assisted workflows more clearly and help publishers
236
- make informed decisions about AI integration.</p><p>By adopting a thoughtful
237
- strategy, the combined strengths of AI and human expertise can drive significant
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- advancements and innovation within the publishing industry.</p><hr><!--kg-card-begin:
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- html--><p class=''u-drop-cap-small''><sup>1</sup> It''s worth noting that
240
- we use the term AI here, but we are actually referring to large language models
241
- (LLMs); AI serves as useful shorthand since it''s the common term used in
242
- our community. As we all gain more experience, being more accurate about how
243
- we use terms like AI and LLM will become increasingly important. A Large Language
244
- Model (LLM) can be described as a sophisticated text processor. It''s an advanced
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- machine learning model designed to process, generate, and understand natural
246
- language text.</p><!--kg-card-end: html--><!--kg-card-begin: html--><p class=''u-drop-cap-small''><sup>2</sup>
247
- By publishing, we are referring to both traditional journal-focused publishing
248
- models as well as emergent publishing models such as preprints, protocols/methods,
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- micropubs, data, etc.</p>\n<!--kg-card-end: html--><p><em>Many thanks to Ben
250
- Whitmore, Ryan Dix-Peek, and Nokome Bentley for the discussions that lead
251
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252
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