ccls-ccls_engine 3.11.0
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- data/README.rdoc +182 -0
- data/app/models/abstract.rb +181 -0
- data/app/models/abstract_search.rb +50 -0
- data/app/models/abstract_validations.rb +324 -0
- data/app/models/address.rb +70 -0
- data/app/models/address_type.rb +15 -0
- data/app/models/addressing.rb +147 -0
- data/app/models/aliquot.rb +44 -0
- data/app/models/aliquot_sample_format.rb +13 -0
- data/app/models/analysis.rb +14 -0
- data/app/models/bc_request.rb +20 -0
- data/app/models/candidate_control.rb +101 -0
- data/app/models/context.rb +23 -0
- data/app/models/context_data_source.rb +4 -0
- data/app/models/county.rb +16 -0
- data/app/models/data_source.rb +24 -0
- data/app/models/diagnosis.rb +23 -0
- data/app/models/document_type.rb +16 -0
- data/app/models/document_version.rb +27 -0
- data/app/models/enrollment.rb +78 -0
- data/app/models/enrollment_validations.rb +167 -0
- data/app/models/follow_up.rb +16 -0
- data/app/models/follow_up_type.rb +18 -0
- data/app/models/gift_card.rb +22 -0
- data/app/models/gift_card_search.rb +137 -0
- data/app/models/home_exposure_response.rb +24 -0
- data/app/models/homex_outcome.rb +75 -0
- data/app/models/hospital.rb +22 -0
- data/app/models/icf_master_id.rb +30 -0
- data/app/models/icf_master_tracker.rb +217 -0
- data/app/models/icf_master_tracker_change.rb +9 -0
- data/app/models/icf_master_tracker_update.rb +50 -0
- data/app/models/ineligible_reason.rb +26 -0
- data/app/models/instrument.rb +26 -0
- data/app/models/instrument_type.rb +17 -0
- data/app/models/instrument_version.rb +28 -0
- data/app/models/interview.rb +122 -0
- data/app/models/interview_method.rb +17 -0
- data/app/models/interview_outcome.rb +16 -0
- data/app/models/language.rb +28 -0
- data/app/models/live_birth_data_update.rb +142 -0
- data/app/models/operational_event.rb +99 -0
- data/app/models/operational_event_type.rb +31 -0
- data/app/models/organization.rb +28 -0
- data/app/models/patient.rb +63 -0
- data/app/models/patient_validations.rb +118 -0
- data/app/models/person.rb +28 -0
- data/app/models/phone_number.rb +105 -0
- data/app/models/phone_type.rb +15 -0
- data/app/models/project.rb +39 -0
- data/app/models/project_outcome.rb +19 -0
- data/app/models/race.rb +31 -0
- data/app/models/refusal_reason.rb +23 -0
- data/app/models/sample.rb +168 -0
- data/app/models/sample_kit.rb +14 -0
- data/app/models/sample_outcome.rb +16 -0
- data/app/models/sample_temperature.rb +14 -0
- data/app/models/sample_type.rb +37 -0
- data/app/models/search.rb +195 -0
- data/app/models/section.rb +18 -0
- data/app/models/state.rb +25 -0
- data/app/models/study_subject.rb +237 -0
- data/app/models/study_subject_abstracts.rb +47 -0
- data/app/models/study_subject_addresses.rb +34 -0
- data/app/models/study_subject_associations.rb +38 -0
- data/app/models/study_subject_duplicates.rb +111 -0
- data/app/models/study_subject_enrollments.rb +17 -0
- data/app/models/study_subject_homex_outcome.rb +22 -0
- data/app/models/study_subject_identifier.rb +153 -0
- data/app/models/study_subject_interviews.rb +25 -0
- data/app/models/study_subject_languages.rb +21 -0
- data/app/models/study_subject_operational_events.rb +66 -0
- data/app/models/study_subject_patient.rb +177 -0
- data/app/models/study_subject_pii.rb +74 -0
- data/app/models/study_subject_races.rb +25 -0
- data/app/models/study_subject_search.rb +260 -0
- data/app/models/study_subject_validations.rb +116 -0
- data/app/models/subject_language.rb +11 -0
- data/app/models/subject_race.rb +11 -0
- data/app/models/subject_relationship.rb +21 -0
- data/app/models/subject_type.rb +22 -0
- data/app/models/tracing_status.rb +20 -0
- data/app/models/transfer.rb +40 -0
- data/app/models/unit.rb +14 -0
- data/app/models/vital_status.rb +19 -0
- data/app/models/zip_code.rb +36 -0
- data/config/abstract_fields.yml +1038 -0
- data/config/abstract_sections.yml +77 -0
- data/config/home_exposure_response_fields.yml +583 -0
- data/config/icf_master_tracker_update.yml +56 -0
- data/config/live_birth_data_update.yml +56 -0
- data/config/shared_use_db.yml +4 -0
- data/generators/ccls_engine/USAGE +2 -0
- data/generators/ccls_engine/ccls_engine_generator.rb +123 -0
- data/generators/ccls_engine/templates/autotest_ccls_engine.rb +3 -0
- data/generators/ccls_engine/templates/ccls_engine.rake +12 -0
- data/generators/ccls_engine/templates/fixtures/address_types.yml +30 -0
- data/generators/ccls_engine/templates/fixtures/context_data_sources.yml +54 -0
- data/generators/ccls_engine/templates/fixtures/contexts.yml +19 -0
- data/generators/ccls_engine/templates/fixtures/data_sources.yml +40 -0
- data/generators/ccls_engine/templates/fixtures/diagnoses.yml +40 -0
- data/generators/ccls_engine/templates/fixtures/document_types.yml +65 -0
- data/generators/ccls_engine/templates/fixtures/document_versions.csv +155 -0
- data/generators/ccls_engine/templates/fixtures/follow_up_types.yml +16 -0
- data/generators/ccls_engine/templates/fixtures/hospitals.yml +114 -0
- data/generators/ccls_engine/templates/fixtures/ineligible_reasons.yml +35 -0
- data/generators/ccls_engine/templates/fixtures/instrument_types.yml +26 -0
- data/generators/ccls_engine/templates/fixtures/instrument_versions.yml +22 -0
- data/generators/ccls_engine/templates/fixtures/instruments.yml +22 -0
- data/generators/ccls_engine/templates/fixtures/interview_methods.yml +30 -0
- data/generators/ccls_engine/templates/fixtures/interview_outcomes.yml +31 -0
- data/generators/ccls_engine/templates/fixtures/languages.yml +34 -0
- data/generators/ccls_engine/templates/fixtures/operational_event_types.yml +141 -0
- data/generators/ccls_engine/templates/fixtures/organizations.yml +198 -0
- data/generators/ccls_engine/templates/fixtures/people.yml +130 -0
- data/generators/ccls_engine/templates/fixtures/phone_types.yml +30 -0
- data/generators/ccls_engine/templates/fixtures/project_outcomes.yml +25 -0
- data/generators/ccls_engine/templates/fixtures/projects.yml +59 -0
- data/generators/ccls_engine/templates/fixtures/races.yml +52 -0
- data/generators/ccls_engine/templates/fixtures/refusal_reasons.yml +55 -0
- data/generators/ccls_engine/templates/fixtures/sample_outcomes.yml +36 -0
- data/generators/ccls_engine/templates/fixtures/sample_temperatures.yml +16 -0
- data/generators/ccls_engine/templates/fixtures/sample_types.yml +147 -0
- data/generators/ccls_engine/templates/fixtures/sections.yml +31 -0
- data/generators/ccls_engine/templates/fixtures/states.yml +363 -0
- data/generators/ccls_engine/templates/fixtures/subject_relationships.yml +46 -0
- data/generators/ccls_engine/templates/fixtures/subject_types.yml +30 -0
- data/generators/ccls_engine/templates/fixtures/tracing_statuses.yml +30 -0
- data/generators/ccls_engine/templates/fixtures/units.yml +13 -0
- data/generators/ccls_engine/templates/fixtures/vital_statuses.yml +28 -0
- data/generators/ccls_engine/templates/functional/roles_controller_test.rb +142 -0
- data/generators/ccls_engine/templates/functional/sessions_controller_test.rb +19 -0
- data/generators/ccls_engine/templates/functional/users_controller_test.rb +94 -0
- data/generators/ccls_engine/templates/images/sort_down.png +0 -0
- data/generators/ccls_engine/templates/images/sort_up.png +0 -0
- data/generators/ccls_engine/templates/initializer.rb +28 -0
- data/generators/ccls_engine/templates/javascripts/ccls_engine.js +24 -0
- data/generators/ccls_engine/templates/javascripts/jquery-ui.js +763 -0
- data/generators/ccls_engine/templates/javascripts/jquery.js +154 -0
- data/generators/ccls_engine/templates/javascripts/jrails.js +1 -0
- data/generators/ccls_engine/templates/migrations/create_user_invitations.rb +18 -0
- data/generators/ccls_engine/templates/migrations/create_users.rb +33 -0
- data/generators/ccls_engine/templates/migrations/drop_user_invitations.rb +18 -0
- data/generators/ccls_engine/templates/stylesheets/ccls_engine.css +180 -0
- data/generators/ccls_engine/templates/stylesheets/user.css +35 -0
- data/generators/ccls_engine/templates/stylesheets/users.css +23 -0
- data/generators/ccls_engine/templates/unit/core_extension_test.rb +18 -0
- data/generators/ccls_engine/templates/unit/role_test.rb +30 -0
- data/generators/ccls_engine/templates/unit/user_test.rb +321 -0
- data/lib/ccls-ccls_engine.rb +1 -0
- data/lib/ccls_engine.rb +135 -0
- data/lib/ccls_engine/action_view_extension.rb +3 -0
- data/lib/ccls_engine/action_view_extension/base.rb +53 -0
- data/lib/ccls_engine/action_view_extension/form_builder.rb +39 -0
- data/lib/ccls_engine/active_record_extension.rb +2 -0
- data/lib/ccls_engine/active_record_extension/base.rb +70 -0
- data/lib/ccls_engine/active_record_shared.rb +8 -0
- data/lib/ccls_engine/assertions.rb +69 -0
- data/lib/ccls_engine/autotest.rb +54 -0
- data/lib/ccls_engine/ccls_user.rb +117 -0
- data/lib/ccls_engine/core_extension.rb +14 -0
- data/lib/ccls_engine/date_and_time_formats.rb +30 -0
- data/lib/ccls_engine/factories.rb +880 -0
- data/lib/ccls_engine/factory_test_helper.rb +276 -0
- data/lib/ccls_engine/helper.rb +112 -0
- data/lib/ccls_engine/icf_master_tracker_update_test_helper.rb +121 -0
- data/lib/ccls_engine/live_birth_data_update_test_helper.rb +110 -0
- data/lib/ccls_engine/package_test_helper.rb +49 -0
- data/lib/ccls_engine/shared_database.rb +20 -0
- data/lib/ccls_engine/tasks.rb +1 -0
- data/lib/ccls_engine/test_tasks.rb +52 -0
- data/lib/ccls_engine/translation_table.rb +86 -0
- data/lib/shared_migration.rb +5 -0
- data/lib/surveyor/survey_extensions.rb +125 -0
- data/lib/tasks/application.rake +286 -0
- data/lib/tasks/calnet_authenticated.rake +6 -0
- data/lib/tasks/common_lib.rake +7 -0
- data/lib/tasks/database.rake +288 -0
- data/lib/tasks/documentation.rake +71 -0
- data/lib/tasks/homex_import.rake +723 -0
- data/lib/tasks/odms_import.rake +1116 -0
- data/lib/tasks/simply_authorized.rake +6 -0
- data/lib/tasks/ucb_ccls_engine_tasks.rake +4 -0
- data/lib/tasks/use_db.rake +4 -0
- data/rails/init.rb +4 -0
- data/test/unit/ccls/abstract_search_test.rb +150 -0
- data/test/unit/ccls/abstract_test.rb +674 -0
- data/test/unit/ccls/address_test.rb +155 -0
- data/test/unit/ccls/address_type_test.rb +25 -0
- data/test/unit/ccls/addressing_test.rb +466 -0
- data/test/unit/ccls/aliquot_sample_format_test.rb +20 -0
- data/test/unit/ccls/aliquot_test.rb +156 -0
- data/test/unit/ccls/analysis_test.rb +31 -0
- data/test/unit/ccls/bc_request_test.rb +43 -0
- data/test/unit/ccls/candidate_control_test.rb +712 -0
- data/test/unit/ccls/context_data_source_test.rb +26 -0
- data/test/unit/ccls/context_test.rb +40 -0
- data/test/unit/ccls/core_extension_test.rb +17 -0
- data/test/unit/ccls/county_test.rb +34 -0
- data/test/unit/ccls/data_source_test.rb +41 -0
- data/test/unit/ccls/diagnosis_test.rb +51 -0
- data/test/unit/ccls/document_type_test.rb +35 -0
- data/test/unit/ccls/document_version_test.rb +68 -0
- data/test/unit/ccls/enrollment_test.rb +575 -0
- data/test/unit/ccls/follow_up_test.rb +23 -0
- data/test/unit/ccls/follow_up_type_test.rb +34 -0
- data/test/unit/ccls/gift_card_search_test.rb +153 -0
- data/test/unit/ccls/gift_card_test.rb +40 -0
- data/test/unit/ccls/home_exposure_response_test.rb +83 -0
- data/test/unit/ccls/homex_outcome_test.rb +199 -0
- data/test/unit/ccls/hospital_test.rb +102 -0
- data/test/unit/ccls/icf_master_id_test.rb +30 -0
- data/test/unit/ccls/icf_master_tracker_change_test.rb +14 -0
- data/test/unit/ccls/icf_master_tracker_test.rb +132 -0
- data/test/unit/ccls/icf_master_tracker_update_test.rb +176 -0
- data/test/unit/ccls/ineligible_reason_test.rb +48 -0
- data/test/unit/ccls/instrument_test.rb +62 -0
- data/test/unit/ccls/instrument_type_test.rb +39 -0
- data/test/unit/ccls/instrument_version_test.rb +71 -0
- data/test/unit/ccls/interview_method_test.rb +44 -0
- data/test/unit/ccls/interview_outcome_test.rb +34 -0
- data/test/unit/ccls/interview_test.rb +298 -0
- data/test/unit/ccls/language_test.rb +47 -0
- data/test/unit/ccls/live_birth_data_update_test.rb +358 -0
- data/test/unit/ccls/operational_event_test.rb +187 -0
- data/test/unit/ccls/operational_event_type_test.rb +51 -0
- data/test/unit/ccls/organization_test.rb +64 -0
- data/test/unit/ccls/patient_test.rb +538 -0
- data/test/unit/ccls/person_test.rb +55 -0
- data/test/unit/ccls/phone_number_test.rb +244 -0
- data/test/unit/ccls/phone_type_test.rb +32 -0
- data/test/unit/ccls/project_outcome_test.rb +34 -0
- data/test/unit/ccls/project_test.rb +60 -0
- data/test/unit/ccls/race_test.rb +37 -0
- data/test/unit/ccls/refusal_reason_test.rb +52 -0
- data/test/unit/ccls/role_test.rb +26 -0
- data/test/unit/ccls/sample_kit_test.rb +35 -0
- data/test/unit/ccls/sample_outcome_test.rb +34 -0
- data/test/unit/ccls/sample_temperature_test.rb +25 -0
- data/test/unit/ccls/sample_test.rb +363 -0
- data/test/unit/ccls/sample_type_test.rb +58 -0
- data/test/unit/ccls/section_test.rb +34 -0
- data/test/unit/ccls/state_test.rb +31 -0
- data/test/unit/ccls/study_subject_abstracts_test.rb +115 -0
- data/test/unit/ccls/study_subject_addresses_test.rb +93 -0
- data/test/unit/ccls/study_subject_duplicates_test.rb +407 -0
- data/test/unit/ccls/study_subject_enrollments_test.rb +65 -0
- data/test/unit/ccls/study_subject_homex_outcome_test.rb +64 -0
- data/test/unit/ccls/study_subject_identifier_test.rb +439 -0
- data/test/unit/ccls/study_subject_interviews_test.rb +26 -0
- data/test/unit/ccls/study_subject_languages_test.rb +142 -0
- data/test/unit/ccls/study_subject_operational_events_test.rb +53 -0
- data/test/unit/ccls/study_subject_patient_test.rb +249 -0
- data/test/unit/ccls/study_subject_pii_test.rb +278 -0
- data/test/unit/ccls/study_subject_races_test.rb +203 -0
- data/test/unit/ccls/study_subject_search_test.rb +704 -0
- data/test/unit/ccls/study_subject_test.rb +770 -0
- data/test/unit/ccls/subject_language_test.rb +43 -0
- data/test/unit/ccls/subject_race_test.rb +35 -0
- data/test/unit/ccls/subject_relationship_test.rb +43 -0
- data/test/unit/ccls/subject_type_test.rb +40 -0
- data/test/unit/ccls/tracing_status_test.rb +32 -0
- data/test/unit/ccls/transfer_test.rb +81 -0
- data/test/unit/ccls/translation_table_test.rb +40 -0
- data/test/unit/ccls/unit_test.rb +21 -0
- data/test/unit/ccls/user_test.rb +156 -0
- data/test/unit/ccls/vital_status_test.rb +36 -0
- data/test/unit/ccls/zip_code_test.rb +55 -0
- metadata +633 -0
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class County < ActiveRecordShared
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default_scope :order => :name
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has_many :zip_codes
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validates_presence_of :name
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validates_length_of :name, :maximum => 250
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validates_presence_of :state_abbrev
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validates_length_of :state_abbrev, :maximum => 2
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validates_length_of :fips_code, :maximum => 5, :allow_nil => true
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def to_s
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"#{name}, #{state_abbrev}"
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end
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end
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# don't know exactly
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class DataSource < ActiveRecordShared
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acts_as_list
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default_scope :order => :position
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acts_like_a_hash
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validates_length_of :data_origin,
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:other_organization, :other_person,
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:maximum => 250, :allow_blank => true
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# Returns description
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def to_s
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description
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end
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# Returns boolean of comparison
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# true only if key == 'other'
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def is_other?
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key == 'other'
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end
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end
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# don't know
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class Diagnosis < ActiveRecordShared
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acts_as_list
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default_scope :order => :position
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acts_like_a_hash
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validates_presence_of :code
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validates_uniqueness_of :code
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# Return description
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def to_s
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description
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end
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# Returns boolean of comparison
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# true only if key == 'other'
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def is_other?
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key == 'other'
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end
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end
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class DocumentType < ActiveRecordShared
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acts_as_list
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default_scope :order => :position
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has_many :document_versions
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validates_presence_of :title
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validates_length_of :title, :maximum => 250, :allow_blank => true
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validates_length_of :description, :maximum => 250, :allow_blank => true
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def to_s
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title
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end
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end
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class DocumentVersion < ActiveRecordShared
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acts_as_list
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default_scope :order => 'position, title ASC'
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belongs_to :document_type
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belongs_to :language
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has_many :enrollments
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validates_presence_of :document_type_id
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validates_presence_of :document_type, :if => :document_type_id
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validates_length_of :title, :maximum => 250, :allow_blank => true
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validates_length_of :description, :maximum => 250, :allow_blank => true
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validates_length_of :indicator, :maximum => 250, :allow_blank => true
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validates_complete_date_for :began_use_on, :allow_nil => true
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validates_complete_date_for :ended_use_on, :allow_nil => true
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# Return title
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def to_s
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title
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end
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named_scope :type1, :conditions => { :document_type_id => 1 }
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end
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# Rich join of Subject and Project
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+
# == requires
|
3
|
+
# * project
|
4
|
+
class Enrollment < ActiveRecordShared
|
5
|
+
|
6
|
+
belongs_to :study_subject
|
7
|
+
belongs_to :ineligible_reason
|
8
|
+
belongs_to :refusal_reason
|
9
|
+
belongs_to :document_version
|
10
|
+
belongs_to :project
|
11
|
+
belongs_to :project_outcome
|
12
|
+
belongs_to :tracing_status
|
13
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+
has_many :operational_events
|
14
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+
has_many :follow_ups
|
15
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+
has_many :samples
|
16
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+
|
17
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+
attr_protected :study_subject_id, :study_subject
|
18
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+
|
19
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+
delegate :is_other?, :to => :ineligible_reason, :allow_nil => true, :prefix => true
|
20
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+
delegate :is_other?, :to => :refusal_reason, :allow_nil => true, :prefix => true
|
21
|
+
|
22
|
+
include EnrollmentValidations
|
23
|
+
|
24
|
+
# use after_save, rather than before_save,
|
25
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+
# so that enrollment exists and can be used to create
|
26
|
+
# the operational event as the enrollment is validated
|
27
|
+
# before_save :create_enrollment_update,
|
28
|
+
after_save :create_enrollment_update,
|
29
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+
:if => :is_complete_changed?
|
30
|
+
|
31
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+
after_save :create_subject_consents_operational_event,
|
32
|
+
:if => :consented_changed?
|
33
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+
|
34
|
+
after_save :create_subject_declines_operational_event,
|
35
|
+
:if => :consented_changed?
|
36
|
+
|
37
|
+
named_scope :consented, :conditions => { :consented => YNDK[:yes] }
|
38
|
+
|
39
|
+
protected
|
40
|
+
|
41
|
+
def create_enrollment_update
|
42
|
+
operational_event_type, occurred_on = if( is_complete == YNDK[:yes] )
|
43
|
+
[OperationalEventType['complete'], completed_on]
|
44
|
+
elsif( is_complete_was == YNDK[:yes] )
|
45
|
+
[OperationalEventType['reopened'], Date.today]
|
46
|
+
else
|
47
|
+
[nil, nil]
|
48
|
+
end
|
49
|
+
unless operational_event_type.nil?
|
50
|
+
OperationalEvent.create!(
|
51
|
+
:enrollment => self,
|
52
|
+
:operational_event_type => operational_event_type,
|
53
|
+
:occurred_on => occurred_on
|
54
|
+
)
|
55
|
+
end
|
56
|
+
end
|
57
|
+
|
58
|
+
def create_subject_consents_operational_event
|
59
|
+
if( ( consented == YNDK[:yes] ) and ( consented_was != YNDK[:yes] ) )
|
60
|
+
OperationalEvent.create!(
|
61
|
+
:enrollment => self,
|
62
|
+
:operational_event_type => OperationalEventType['subjectConsents'],
|
63
|
+
:occurred_on => consented_on
|
64
|
+
)
|
65
|
+
end
|
66
|
+
end
|
67
|
+
|
68
|
+
def create_subject_declines_operational_event
|
69
|
+
if( ( consented == YNDK[:no] ) and ( consented_was != YNDK[:no] ) )
|
70
|
+
OperationalEvent.create!(
|
71
|
+
:enrollment => self,
|
72
|
+
:operational_event_type => OperationalEventType['subjectDeclines'],
|
73
|
+
:occurred_on => consented_on
|
74
|
+
)
|
75
|
+
end
|
76
|
+
end
|
77
|
+
|
78
|
+
end
|
@@ -0,0 +1,167 @@
|
|
1
|
+
#
|
2
|
+
# Simply extracted some code to clean up model.
|
3
|
+
# I'd like to do this to all of the really big classes
|
4
|
+
# but let's see how this goes first.
|
5
|
+
#
|
6
|
+
module EnrollmentValidations
|
7
|
+
def self.included(base)
|
8
|
+
# Must delay the calls to these ActiveRecord methods
|
9
|
+
# or it will raise many "undefined method"s.
|
10
|
+
base.class_eval do
|
11
|
+
|
12
|
+
validates_presence_of :project_id
|
13
|
+
validates_presence_of :project, :if => :project_id
|
14
|
+
validates_uniqueness_of :project_id, :scope => [:study_subject_id], :allow_blank => true
|
15
|
+
|
16
|
+
validates_length_of :notes, :maximum => 65000, :allow_blank => true
|
17
|
+
|
18
|
+
validates_presence_of :ineligible_reason_id,
|
19
|
+
:message => 'required if is_eligible is No',
|
20
|
+
:if => :is_not_eligible?
|
21
|
+
validates_absence_of :ineligible_reason_id,
|
22
|
+
:message => 'not allowed unless is_eligible is No',
|
23
|
+
:unless => :is_not_eligible?
|
24
|
+
validates_presence_of :ineligible_reason, :if => :ineligible_reason_id
|
25
|
+
|
26
|
+
validates_presence_of :ineligible_reason_specify,
|
27
|
+
:message => 'required if ineligible reason is Other',
|
28
|
+
:if => :ineligible_reason_is_other?
|
29
|
+
validates_absence_of :ineligible_reason_specify,
|
30
|
+
:message => 'not allowed unless is_eligible is No',
|
31
|
+
:unless => :is_not_eligible?
|
32
|
+
|
33
|
+
validates_presence_of :reason_not_chosen,
|
34
|
+
:message => 'requires if is_chosen is No',
|
35
|
+
:if => :is_not_chosen?
|
36
|
+
validates_absence_of :reason_not_chosen,
|
37
|
+
:message => 'not allowed unless is_chosen is No',
|
38
|
+
:unless => :is_not_chosen?
|
39
|
+
|
40
|
+
validates_presence_of :refusal_reason_id,
|
41
|
+
:message => "required if consented is No",
|
42
|
+
:if => :not_consented?
|
43
|
+
validates_absence_of :refusal_reason_id,
|
44
|
+
:message => "not allowed unless consented is No",
|
45
|
+
:unless => :not_consented?
|
46
|
+
validates_presence_of :refusal_reason, :if => :refusal_reason_id
|
47
|
+
|
48
|
+
# validates_presence_of :consented_on,
|
49
|
+
# :message => 'date is required when adding consent information',
|
50
|
+
# :if => :consented?
|
51
|
+
validates_presence_of :consented_on,
|
52
|
+
:message => 'date is required when adding consent information',
|
53
|
+
:unless => :consent_unknown?
|
54
|
+
# :if => :not_consented?
|
55
|
+
validates_absence_of :consented_on,
|
56
|
+
:message => "not allowed if consented is blank or Don't Know",
|
57
|
+
:if => :consent_unknown?
|
58
|
+
validates_past_date_for :consented_on
|
59
|
+
|
60
|
+
validates_presence_of :other_refusal_reason,
|
61
|
+
:message => "required if refusal reason is Other",
|
62
|
+
:if => :refusal_reason_is_other?
|
63
|
+
validates_absence_of :other_refusal_reason,
|
64
|
+
:message => "not allowed unless consented is No",
|
65
|
+
:unless => :not_consented?
|
66
|
+
|
67
|
+
validates_presence_of :terminated_reason,
|
68
|
+
:message => "required if terminated participation is Yes",
|
69
|
+
:if => :terminated_participation?
|
70
|
+
validates_absence_of :terminated_reason,
|
71
|
+
:message => "not allowed unless terminated participation is Yes",
|
72
|
+
:unless => :terminated_participation?
|
73
|
+
|
74
|
+
validates_presence_of :completed_on,
|
75
|
+
:message => "required if is_complete is Yes",
|
76
|
+
:if => :is_complete?
|
77
|
+
validates_absence_of :completed_on,
|
78
|
+
:message => "not allowed unless is_complete is Yes",
|
79
|
+
:unless => :is_complete?
|
80
|
+
validates_past_date_for :completed_on
|
81
|
+
|
82
|
+
validates_absence_of :document_version_id,
|
83
|
+
:message => "not allowed if consented is blank or Don't Know",
|
84
|
+
:if => :consent_unknown?
|
85
|
+
validates_presence_of :document_version, :if => :document_version_id
|
86
|
+
|
87
|
+
validates_complete_date_for :consented_on, :allow_nil => true
|
88
|
+
validates_complete_date_for :completed_on, :allow_nil => true
|
89
|
+
|
90
|
+
validates_length_of :recruitment_priority, :maximum => 250, :allow_blank => true
|
91
|
+
validates_length_of :ineligible_reason_specify, :maximum => 250, :allow_blank => true
|
92
|
+
validates_length_of :other_refusal_reason, :maximum => 250, :allow_blank => true
|
93
|
+
validates_length_of :reason_not_chosen, :maximum => 250, :allow_blank => true
|
94
|
+
validates_length_of :terminated_reason, :maximum => 250, :allow_blank => true
|
95
|
+
validates_length_of :reason_closed, :maximum => 250, :allow_blank => true
|
96
|
+
|
97
|
+
|
98
|
+
validates_inclusion_of :consented, :is_eligible,
|
99
|
+
:is_chosen, :is_complete, :terminated_participation,
|
100
|
+
:is_candidate,
|
101
|
+
:in => YNDK.valid_values, :allow_nil => true
|
102
|
+
|
103
|
+
validates_inclusion_of :use_smp_future_rsrch,
|
104
|
+
:use_smp_future_cancer_rsrch, :use_smp_future_other_rsrch,
|
105
|
+
:share_smp_with_others, :contact_for_related_study,
|
106
|
+
:provide_saliva_smp, :receive_study_findings,
|
107
|
+
:in => ADNA.valid_values, :allow_nil => true
|
108
|
+
|
109
|
+
|
110
|
+
#
|
111
|
+
# NOTE: BEWARE of POSSIBLE strings in these comparisons.
|
112
|
+
# Rails SHOULD actually convert the incoming
|
113
|
+
# params (which are strings) to integers or nil.
|
114
|
+
#
|
115
|
+
|
116
|
+
# Return boolean of comparison
|
117
|
+
# true only if is_eligible == 2
|
118
|
+
def is_not_eligible?
|
119
|
+
# is_eligible.to_i == YNDK[:no] #2
|
120
|
+
is_eligible == YNDK[:no] #2
|
121
|
+
end
|
122
|
+
|
123
|
+
# Return boolean of comparison
|
124
|
+
# true only if is_chosen == 2
|
125
|
+
def is_not_chosen?
|
126
|
+
# is_chosen.to_i == YNDK[:no] #2
|
127
|
+
is_chosen == YNDK[:no] #2
|
128
|
+
end
|
129
|
+
|
130
|
+
# Return boolean of comparison
|
131
|
+
# true only if consented == 1
|
132
|
+
# no longer used, I believe
|
133
|
+
# def consented?
|
134
|
+
# consented == 1
|
135
|
+
# end
|
136
|
+
|
137
|
+
# Return boolean of comparison
|
138
|
+
# true only if consented == 2
|
139
|
+
def not_consented?
|
140
|
+
# consented.to_i == YNDK[:no] #2
|
141
|
+
consented == YNDK[:no] #2
|
142
|
+
end
|
143
|
+
|
144
|
+
# Return boolean of comparison
|
145
|
+
# true only if consented == nil or 999
|
146
|
+
def consent_unknown?
|
147
|
+
# [nil,999,'','999'].include?(consented) # not 1 or 2
|
148
|
+
[nil,999].include?(consented) # not 1 or 2
|
149
|
+
end
|
150
|
+
|
151
|
+
# Return boolean of comparison
|
152
|
+
# true only if terminated_participation == 1
|
153
|
+
def terminated_participation?
|
154
|
+
# terminated_participation.to_i == YNDK[:yes] # 1
|
155
|
+
terminated_participation == YNDK[:yes] # 1
|
156
|
+
end
|
157
|
+
|
158
|
+
# Return boolean of comparison
|
159
|
+
# true only if is_complete == 1
|
160
|
+
def is_complete?
|
161
|
+
# is_complete.to_i == YNDK[:yes] # 1
|
162
|
+
is_complete == YNDK[:yes] # 1
|
163
|
+
end
|
164
|
+
|
165
|
+
end # class_eval
|
166
|
+
end # included
|
167
|
+
end # EnrollmentValidations
|
@@ -0,0 +1,16 @@
|
|
1
|
+
class FollowUp < ActiveRecordShared
|
2
|
+
|
3
|
+
# with these null = false lines,
|
4
|
+
# there should really be validations
|
5
|
+
# or remove these.
|
6
|
+
# t.integer :section_id, :null => false
|
7
|
+
# t.integer :enrollment_id, :null => false
|
8
|
+
# t.integer :follow_up_type_id, :null => false
|
9
|
+
|
10
|
+
belongs_to :section
|
11
|
+
belongs_to :enrollment
|
12
|
+
belongs_to :follow_up_type
|
13
|
+
|
14
|
+
attr_accessor :current_user
|
15
|
+
|
16
|
+
end
|
@@ -0,0 +1,18 @@
|
|
1
|
+
# == requires
|
2
|
+
# * key ( unique )
|
3
|
+
# * description ( > 3 chars )
|
4
|
+
class FollowUpType < ActiveRecordShared
|
5
|
+
|
6
|
+
acts_as_list
|
7
|
+
default_scope :order => :position
|
8
|
+
|
9
|
+
acts_like_a_hash
|
10
|
+
|
11
|
+
has_many :follow_ups
|
12
|
+
|
13
|
+
# Returns description
|
14
|
+
def to_s
|
15
|
+
description
|
16
|
+
end
|
17
|
+
|
18
|
+
end
|
@@ -0,0 +1,22 @@
|
|
1
|
+
class GiftCard < ActiveRecordShared
|
2
|
+
|
3
|
+
belongs_to :study_subject
|
4
|
+
attr_protected :study_subject_id, :study_subject
|
5
|
+
belongs_to :project
|
6
|
+
|
7
|
+
validates_presence_of :number
|
8
|
+
validates_length_of :number, :maximum => 250, :allow_blank => true
|
9
|
+
validates_uniqueness_of :number
|
10
|
+
validates_length_of :expiration, :maximum => 250, :allow_blank => true
|
11
|
+
validates_length_of :vendor, :maximum => 250, :allow_blank => true
|
12
|
+
|
13
|
+
def to_s
|
14
|
+
number
|
15
|
+
end
|
16
|
+
|
17
|
+
# include GiftCardSearch
|
18
|
+
def self.search(params={})
|
19
|
+
GiftCardSearch.new(params).gift_cards
|
20
|
+
end
|
21
|
+
|
22
|
+
end
|
@@ -0,0 +1,137 @@
|
|
1
|
+
#module GiftCardSearch
|
2
|
+
#def self.included(base)
|
3
|
+
## Must delay the calls to these ActiveRecord methods
|
4
|
+
## or it will raise many "undefined method"s.
|
5
|
+
#base.class_eval do
|
6
|
+
#
|
7
|
+
# def self.valid_search_orders
|
8
|
+
# {
|
9
|
+
# :id => 'gift_cards.id',
|
10
|
+
# :childid => 'study_subjects.childid',
|
11
|
+
# :last_name => 'study_subjects.last_name',
|
12
|
+
# :first_name => 'study_subjects.first_name',
|
13
|
+
# :studyid => 'study_subjects.patid',
|
14
|
+
# :number => 'gift_cards.number',
|
15
|
+
# :issued_on => 'gift_cards.issued_on'
|
16
|
+
# }.with_indifferent_access
|
17
|
+
# end
|
18
|
+
#
|
19
|
+
# def self.search(params={})
|
20
|
+
# params = params.dup.with_indifferent_access
|
21
|
+
# paginate_search = params.has_key?(:paginate) && params[:paginate]
|
22
|
+
# per_page = params[:per_page]
|
23
|
+
# page = params[:page]
|
24
|
+
# q = params.has_key?(:q) && params[:q]
|
25
|
+
# conditions = if q.blank?
|
26
|
+
# nil
|
27
|
+
# else
|
28
|
+
# c = []
|
29
|
+
# v = {}
|
30
|
+
# q.to_s.split(/\s+/).each_with_index do |t,i|
|
31
|
+
# c.push("gift_cards.number LIKE :t#{i}")
|
32
|
+
# c.push("study_subjects.first_name LIKE :t#{i}")
|
33
|
+
# c.push("study_subjects.last_name LIKE :t#{i}")
|
34
|
+
# c.push("study_subjects.patid LIKE :t#{i}")
|
35
|
+
# c.push("study_subjects.childid LIKE :t#{i}")
|
36
|
+
# v["t#{i}".to_sym] = "%#{t}%"
|
37
|
+
# end
|
38
|
+
# [ "( #{c.join(' OR ')} )", v ]
|
39
|
+
# end
|
40
|
+
#
|
41
|
+
# order = params.has_key?(:order) && params[:order]
|
42
|
+
# dir = params[:dir]
|
43
|
+
# search_order = if valid_search_orders.has_key?(order)
|
44
|
+
# order_string = valid_search_orders[order]
|
45
|
+
# dir = case dir.try(:downcase)
|
46
|
+
# when 'desc' then 'desc'
|
47
|
+
# else 'asc'
|
48
|
+
# end
|
49
|
+
# [order_string,dir].join(' ')
|
50
|
+
# else
|
51
|
+
# nil
|
52
|
+
# end
|
53
|
+
#
|
54
|
+
# GiftCard.send(
|
55
|
+
# (paginate_search)?'paginate':'all',{
|
56
|
+
# :order => search_order,
|
57
|
+
# :joins => "LEFT JOIN study_subjects ON gift_cards.study_subject_id = study_subjects.id",
|
58
|
+
# :conditions => conditions
|
59
|
+
# }.merge(
|
60
|
+
# (paginate_search)?{
|
61
|
+
# :per_page => per_page||25,
|
62
|
+
# :page => page||1
|
63
|
+
# }:{}
|
64
|
+
# )
|
65
|
+
# )
|
66
|
+
# end
|
67
|
+
#
|
68
|
+
#end # class_eval
|
69
|
+
#end # included
|
70
|
+
#end # GiftCardSearch
|
71
|
+
#
|
72
|
+
#
|
73
|
+
#__END__
|
74
|
+
|
75
|
+
# This is only ever used in HomeX which is going to go away.
|
76
|
+
|
77
|
+
|
78
|
+
class GiftCardSearch < Search
|
79
|
+
|
80
|
+
self.searchable_attributes += [ :q, :number ]
|
81
|
+
|
82
|
+
# self.valid_orders.merge!({ # NO!
|
83
|
+
# @valid_orders.merge!({ # NO!
|
84
|
+
self.valid_orders = self.valid_orders.merge({
|
85
|
+
:id => nil,
|
86
|
+
:childid => 'study_subjects.childid',
|
87
|
+
:last_name => 'study_subjects.last_name',
|
88
|
+
:first_name => 'study_subjects.first_name',
|
89
|
+
:studyid => 'study_subjects.patid',
|
90
|
+
:number => nil,
|
91
|
+
:issued_on => nil
|
92
|
+
})
|
93
|
+
|
94
|
+
def gift_cards
|
95
|
+
@gift_cards ||= GiftCard.send(
|
96
|
+
(paginate?)?'paginate':'all',{
|
97
|
+
:order => search_order,
|
98
|
+
:joins => joins,
|
99
|
+
:conditions => conditions
|
100
|
+
}.merge(
|
101
|
+
(paginate?)?{
|
102
|
+
:per_page => per_page||25,
|
103
|
+
:page => page||1
|
104
|
+
}:{}
|
105
|
+
)
|
106
|
+
)
|
107
|
+
end
|
108
|
+
|
109
|
+
private # THIS IS REQUIRED
|
110
|
+
|
111
|
+
def q_conditions
|
112
|
+
unless q.blank?
|
113
|
+
c = []
|
114
|
+
v = {}
|
115
|
+
q.to_s.split(/\s+/).each_with_index do |t,i|
|
116
|
+
c.push("gift_cards.number LIKE :t#{i}")
|
117
|
+
c.push("study_subjects.first_name LIKE :t#{i}")
|
118
|
+
c.push("study_subjects.last_name LIKE :t#{i}")
|
119
|
+
c.push("study_subjects.patid LIKE :t#{i}")
|
120
|
+
c.push("study_subjects.childid LIKE :t#{i}")
|
121
|
+
v["t#{i}".to_sym] = "%#{t}%"
|
122
|
+
end
|
123
|
+
[ "( #{c.join(' OR ')} )", v ]
|
124
|
+
end
|
125
|
+
end
|
126
|
+
|
127
|
+
def study_subjects_joins
|
128
|
+
"LEFT JOIN study_subjects ON gift_cards.study_subject_id = study_subjects.id"
|
129
|
+
end
|
130
|
+
|
131
|
+
# # must come before other study_subject related joins
|
132
|
+
# def a_subjects_joins
|
133
|
+
# "LEFT JOIN study_subjects ON gift_cards.study_subject_id = study_subjects.id" if(
|
134
|
+
# %w(childid studyid last_name first_name).include?(@order) )
|
135
|
+
# end
|
136
|
+
|
137
|
+
end
|