ccls-ccls_engine 3.11.0

data/lib/tasks/documentation.rake

@@ -0,0 +1,71 @@
+#
+#	This file has been copied from rails 
+#		.../rails-2.3.5/lib/tasks/documentation.rake
+#	so that parts of it could be modified.
+
+namespace :doc do	|doc|
+
+#	Rake::RDocTask.new("app") { |rdoc|
+#
+#		We cannot overwrite or override an RDoc rake task.
+#		Redefining it here actually creates another
+#		of the same name and both are run when
+#		`rake doc:app` is called.	The Rakefile
+#		is modified to handle the modifications.
+#
+#		Actually, that's not entirely true.  This would
+#		add another task, but you can remove and override
+#		a task.  The rdoc_rails plugin was overriding my
+#		override, which caused all the frustration!!!
+#
+#	}
+
+	plugins = FileList['vendor/plugins/**'].collect { |plugin| 
+		File.basename(plugin) }
+
+	namespace :plugins do
+		# Define doc tasks for each plugin
+		plugins.each do |plugin|
+
+			#	clear rails' Rake::Task of the same name
+			Rake::Task[plugin].clear_actions
+			Rake::Task[plugin].clear_prerequisites
+
+			Rake::RDocTask.new(plugin) { |rdoc|
+				plugin_base  = "vendor/plugins/#{plugin}"
+#	newer versions of rdoc have problems with rdoc_rails so
+#	until then, comment this out.
+#				ENV['format'] ||= 'railsfish'
+				rdoc.rdoc_dir = "doc/plugins/#{plugin}"
+				rdoc.template = ENV['template'] if ENV['template']
+				rdoc.title    = "#{plugin.titlecase} Plugin Documentation"
+				rdoc.options << '--line-numbers' 
+#				rdoc.options << '--inline-source'
+				rdoc.options << '--charset' << 'utf-8'
+#				rdoc.options << '--format'  << ENV['format']
+				rdoc.rdoc_files.include("#{plugin_base}/lib/**/*.rb")
+				rdoc.rdoc_files.include("#{plugin_base}/app/**/*.rb")
+
+				%w( README README.rdoc ).each do |readme|
+					if File.exist?("#{plugin_base}/#{readme}")
+						rdoc.main = "#{plugin_base}/#{readme}"
+						break
+					end
+				end
+				%w( TODO.org MIT-LICENSE LICENSE CHANGELOG README README.rdoc ).each do |possible_file|
+					if File.exist?("#{plugin_base}/#{possible_file}")
+						rdoc.rdoc_files.include("#{plugin_base}/#{possible_file}") 
+					end
+				end
+			}
+
+		end
+	end
+
+	task :parse_readme => :environment do
+		require 'rdoc/markup/to_html'
+		h = RDoc::Markup::ToHtml.new
+		puts h.convert( File.read('README.rdoc') )
+	end
+
+end

data/lib/tasks/homex_import.rake

@@ -0,0 +1,723 @@
+
+
+#	20110214 - Commented out these taks as are destructive
+#	           and should never be run anymore.
+
+#	require 'fastercsv'
+#	require 'chronic'
+#	
+#	#BASEDIR = "/Volumes/BUF-Fileshare/SharedFiles/SoftwareDevelopment\(TBD\)/GrantApp/Database/DataLists/jake/"
+#	#BASEDIR = "/Volumes/BUF-Fileshare/RestrictedData/StaffFolders/WendtJake/HomeExposuresImport_20110504/"
+#	BASEDIR = "/Volumes/BUF-Fileshare/SharedFiles/SoftwareDevelopment\(TBD\)/GrantApp/Database/DataLists/HomeExposuresImport_20110504/"
+#	
+#	namespace :homex_destroy do
+#	
+#		desc "Destroy subject and address data"
+#		task :homex_csv_data => :environment do
+#			puts "Destroying existing data"
+#			StudySubject.destroy_all
+#			Enrollment.destroy_all
+#			Addressing.destroy_all
+#			Address.destroy_all
+#			PhoneNumber.destroy_all
+#			Interview.destroy_all
+#			Identifier.destroy_all
+#			Patient.destroy_all
+#			Pii.destroy_all
+#			Sample.destroy_all
+#			SampleKit.destroy_all
+#			Package.destroy_all
+#			HomexOutcome.destroy_all
+#			HomeExposureResponse.destroy_all
+#		end
+#	
+#	end
+#	
+#	
+#	namespace :homex_import do
+#	
+#		desc "Import subject and address data from CSV files"
+#		task :homex_csv_data => [
+#			'homex_destroy:homex_csv_data',
+#			'homex_import:homex_identifiers',
+#			'homex_import:homex_subjects',
+#			'homex_import:homex_piis',
+#			'homex_import:homex_enrollments',
+#			'homex_import:homex_addresses',
+#			'homex_import:homex_interviews',
+#			'homex_import:homex_outcomes'
+#	#		'import:subjects',
+#	#		'import:identifiers'
+#	#		'import:piis',
+#	#		'import:enrollments',
+#	#		'import:contacts'
+#		]
+#	
+#		desc "Import data from homex_identifiers.csv file"
+#		task :homex_identifiers => :environment do
+#			puts "Importing homex_identifiers"
+#	
+#			error_file = File.open('homex_identifiers_errors.txt','w')
+#	
+#			#	DO NOT COMMENT OUT THE HEADER LINE OR IT RAISES CRYPTIC ERROR
+#			(f=FasterCSV.open("#{BASEDIR}/homex_identifiers.csv", 'rb',{
+#				:headers => true })).each do |line|
+#				puts "Processing line #{f.lineno}"
+#				puts line
+#	
+#				#	"childIDWho","childID","subjectID","familyid","matchingid","PatID",
+#				#		"case_control_type","OrderNo","StudyID","newID","subjectType","GBID",
+#				#		"lab_no","lab_no_wiemels","IDNO_wiemels","accession_no","state_id_no",
+#				#		"studyID_noHyphen","studyID_intOnly_noHyphen","icf_master_id","hospital_no"
+#	
+#				#	case_control_type and subjectType are the same
+#	
+#				attributes = {
+#					:childidwho => line['childIDWho'],
+#					:childid => line['childID'],
+#					:subjectid => line['subjectID'],
+#					:familyid => line['familyid'],
+#					:matchingid => line['matchingid'],
+#					:patid => line['PatID'],
+#					:case_control_type => line['case_control_type'],
+#					:orderno => line['OrderNo'],
+#					:studyid => line['StudyID'],
+#					:newid => line['newID'],
+#					:gbid => line['GBID'],
+#					:lab_no => line['lab_no'],
+#					:lab_no_wiemels => line['lab_no_wiemels'],
+#					:idno_wiemels => line['IDNO_wiemels'],
+#					:accession_no => line['accession_no'],
+#					:state_id_no => line['state_id_no'],
+#					:studyid_nohyphen => line['studyID_noHyphen'],
+#					:studyid_intonly_nohyphen => line['studyID_intOnly_noHyphen'],
+#					:icf_master_id => line['icf_master_id']
+#	#
+#	#	hospital_no is now in the Patient model
+#	#
+#	#				:hospital_no => line['hospital_no']
+#				}
+#				Identifier.create!(attributes)
+#	
+#	#			identifier = Identifier.create(attributes)
+#	#			if identifier.new_record?
+#	#				error_file.puts line
+#	#				error_file.puts identifier.errors.full_messages.to_sentence
+#	#				error_file.puts
+#	#			end
+#	
+#			end	#	FasterCSV.open
+#			error_file.close
+#		end		#	task :homex_identifiers => :environment do
+#	
+#	
+#		desc "Import data from homex_subjects.csv file"
+#		task :homex_subjects => :environment do
+#			puts "Importing homex_subjects"
+#	
+#			error_file = File.open('homex_subjects_errors.txt','w')
+#	
+#			#	DO NOT COMMENT OUT THE HEADER LINE OR IT RAISES CRYPTIC ERROR
+#			(f=FasterCSV.open("#{BASEDIR}/homex_subjects.csv", 'rb',{
+#				:headers => true })).each do |line|
+#				puts "Processing line #{f.lineno}"
+#				puts line
+#	
+#				#	"ChildId","subjectID","reference_date","sex","created_at",
+#				#		"vital_status_id","subject_type_id","race_id","DoNotContact"
+#	
+#				created_at = (line['created_at'].blank?) ? nil : Time.parse(line['created_at'])
+#				reference_date = (line['reference_date'].blank?) ? nil : Time.parse(line['reference_date'])
+#				attributes = {
+#					:reference_date => reference_date,
+#					:sex => line['sex'],
+#					:created_at => created_at,
+#					:vital_status_id => line['vital_status_id'],
+#					:subject_type_id => line['subject_type_id'],
+#					:do_not_contact => line['DoNotContact']
+#				}
+#				study_subject = StudySubject.create!(attributes)
+#	
+#	#			identifier = Identifier.find_by_childid(line['ChildId'])
+#				identifier = Identifier.find_by_subjectid(sprintf("%06d",line['subjectID'].to_i))
+#				unless identifier
+#					error_file.puts line
+#					error_file.puts "No identifier found with subjectID = #{line['subjectID']}" 
+#					error_file.puts
+#				else
+#					identifier.study_subject = study_subject
+#					identifier.save!
+#				end
+#	
+#			end	#	FasterCSV.open
+#			error_file.close
+#		end		#	task :homex_subjects => :environment do
+#	  	  	
+#	
+#		desc "Import data from homex_piis.csv file"
+#		task :homex_piis => :environment do
+#			puts "Importing homex_piis"
+#	
+#			error_file = File.open('homex_piis_errors.txt','w')
+#	
+#			#	DO NOT COMMENT OUT THE HEADER LINE OR IT RAISES CRYPTIC ERROR
+#			(f=FasterCSV.open("#{BASEDIR}/homex_piis.csv", 'rb',{
+#				:headers => true })).each do |line|
+#				puts "Processing line #{f.lineno}"
+#				puts line
+#	
+#				#	"childID","subjectID","study_subject_id","first_name","middle_name",
+#				#		"last_name","dob","died_on","state_id_no","mother_first_name",
+#				#		"mother_middle_name","mother_last_name","mother_maiden_name",
+#				#		"father_first_name","father_middle_name","father_last_name","email"
+#	
+#				dob     = (line['dob'].blank?)     ? nil : Time.parse(line['dob'])
+#				died_on = (line['died_on'].blank?) ? nil : Time.parse(line['died_on'])
+#				attributes = {
+#					:dob => dob,
+#					:died_on => died_on,
+#					:first_name => line['first_name'],
+#					:middle_name => line['middle_name'],
+#					:last_name => line['last_name'],
+#					:mother_first_name => line['mother_first_name'],
+#					:mother_middle_name => line['mother_middle_name'],
+#					:mother_last_name => line['mother_last_name'],
+#					:mother_maiden_name => line['mother_maiden_name'],
+#					:father_first_name => line['father_first_name'],
+#					:father_middle_name => line['father_middle_name'],
+#					:father_last_name => line['father_last_name'],
+#					:email => line['email'],
+#				}
+#				pii = Pii.create!(attributes)
+#	
+#	#			identifier = Identifier.find_by_childid(line['childID'])
+#				identifier = Identifier.find_by_subjectid(sprintf("%06d",line['subjectID'].to_i))
+#				unless identifier
+#					error_file.puts line
+#					error_file.puts "No identifier found with subjectID = #{line['subjectID']}" 
+#					error_file.puts
+#				else
+#					pii.study_subject = identifier.study_subject
+#					pii.save!
+#				end
+#	
+#			end	#	FasterCSV.open
+#			error_file.close
+#		end		#	task :homex_piis => :environment do
+#	
+#	
+#	
+#		desc "Import data from homex_enrollments.csv file"
+#		task :homex_enrollments => :environment do
+#			puts "Importing homex_enrollments"
+#	
+#			error_file = File.open('homex_enrollments_errors.txt','w')
+#	
+#			#	DO NOT COMMENT OUT THE HEADER LINE OR IT RAISES CRYPTIC ERROR
+#			(f=FasterCSV.open("#{BASEDIR}/homex_enrollments.csv", 'rb',{
+#				:headers => true })).each do |line|
+#				puts "Processing line #{f.lineno}"
+#				puts line
+#	
+#				#	"id","study_subject_id","project_id","recruitment_priority","able_to_locate",
+#				#		"is_candidate","is_eligible","ineligible_reason_id","ineligible_reason_specify",
+#				#		"consented","consented_on","refusal_reason_id","other_refusal_reason","is_chosen",
+#				#		"reason_not_chosen","terminated_participation","terminated_reason","is_complete",
+#				#		"completed_on","is_closed","reason_closed","notes","created_at","updated_at",
+#				#		"document_version_id","project_outcome_id","project_outcome_on",
+#				#		"childID-deleteme","problem","search_outcome","letter_outcome"
+#	
+#				consented_on       = (line['consented_on'].blank?)     ? 
+#					nil : Time.parse(line['consented_on'])
+#				completed_on       = (line['completed_on'].blank?) ? 
+#					nil : Time.parse(line['completed_on'])
+#				project_outcome_on = (line['project_outcome_on'].blank?) ? 
+#					nil : Time.parse(line['project_outcome_on'])
+#				attributes = {
+#					:project_id                => line['project_id'],
+#					:recruitment_priority      => line['recruitment_priority'],
+#					:able_to_locate            => line['able_to_locate'],
+#					:is_candidate              => line['is_candidate'],
+#					:is_eligible               => line['is_eligible'],
+#					:ineligible_reason_id      => line['ineligible_reason_id'],
+#					:ineligible_reason_specify => line['ineligible_reason_specify'],
+#					:consented                 => line['consented'],
+#					:consented_on              => consented_on,
+#					:refusal_reason_id         => line['refusal_reason_id'],
+#					:other_refusal_reason      => line['other_refusal_reason'],
+#					:is_chosen                 => line['is_chosen'].try(:gsub,/^-/,''),		#	were -1
+#					:reason_not_chosen         => line['reason_not_chosen'],
+#					:terminated_participation  => line['terminated_participation'],
+#					:terminated_reason         => line['terminated_reason'],
+#					:is_complete               => line['is_complete'],
+#					:completed_on              => completed_on,
+#					:is_closed                 => line['is_closed'],
+#					:reason_closed             => line['reason_closed'],
+#					:notes                     => line['notes'],
+#					:document_version_id       => line['document_version_id'],
+#					:project_outcome_id        => line['project_outcome_id'],
+#					:project_outcome_on        => project_outcome_on
+#				#		"childID-deleteme","problem","search_outcome","letter_outcome"
+#				}
+#				if attributes[:is_complete] && attributes[:completed_on].blank?
+#					attributes[:completed_on] = Chronic.parse("01/01/1900")
+#				end
+#	#			if attributes[:consented] && attributes[:consented_on].blank?
+#	#				attributes[:consented_on] = Date.today 
+#	#			end
+#	#			if attributes[:is_eligible] == '2' && attributes[:ineligible_reason_id].blank?
+#	#				attributes[:ineligible_reason_id] = IneligibleReason['legacy'].id
+#	#puts "Manually setting ineligible reason"
+#	#puts IneligibleReason['legacy'].inspect
+#	#			end
+#	#			if attributes[:consented] == '2' && attributes[:refusal_reason_id].blank?
+#	#				attributes[:refusal_reason_id] = RefusalReason['other'].id
+#	#			end
+#				if attributes[:refusal_reason_id] == '7' && attributes[:other_refusal_reason].blank?
+#					attributes[:other_refusal_reason] = "unknown at legacy data import"
+#				end
+#	
+#				identifier = Identifier.find_by_subjectid(sprintf("%06d",line['subjectID'].to_i))
+#				unless identifier
+#					error_file.puts line
+#					error_file.puts "No identifier found with subjectID = #{line['subjectID']}" 
+#					error_file.puts "Enrollment creation not attempted"
+#					error_file.puts
+#				else
+#					enrollment = identifier.study_subject.enrollments.create!(attributes)
+#	#				enrollment = identifier.study_subject.enrollments.new(attributes)
+#	#	many won't be valid, so skip validations
+#	#				enrollment.save(false)
+#				end
+#			end	#	FasterCSV.open
+#			error_file.close
+#		end		#	task :homex_enrollments => :environment do
+#	
+#	
+#		desc "Import data from homex_addresses.csv file"
+#		task :homex_addresses => :environment do
+#			puts "Importing homex_addresses"
+#	
+#			error_file = File.open('homex_addresses_errors.txt','w')
+#	
+#			#	DO NOT COMMENT OUT THE HEADER LINE OR IT RAISES CRYPTIC ERROR
+#			(f=FasterCSV.open("#{BASEDIR}/homex_addresses.csv", 'rb',{
+#				:headers => true })).each do |line|
+#				puts "Processing line #{f.lineno}"
+#				puts line
+#	
+#				#	"ID","Review","ReviewNotes","DataSource","AddressType","ChildID","Street","City",
+#				#		"State","Zipcode","FIPSCountyCode","County","Original","Interview","IsCurrent",
+#				#		"StartDate","EndDate","EntryDate","T2KAddressID","childID-deleteme","study_subject_id"
+#	
+#				valid_from = (line['StartDate'].blank?)     ? 
+#					nil : Time.parse(line['StartDate'])
+#				valid_to   = (line['EndDate'].blank?)     ? 
+#					nil : Time.parse(line['EndDate'])
+#	
+#				attributes = {
+#				#	"ID","Review","ReviewNotes","DataSource",
+#				#		"FIPSCountyCode","Original","Interview",
+#				#		"EntryDate","T2KAddressID"
+#					:address_attributes => {
+#						:address_type_id => AddressType[line['AddressType'].downcase].id,
+#						:line_1          => line['Street'],
+#						:city            => line['City'],
+#						:state           => line['State'],
+#						:zip             => line['Zipcode'],
+#						:county          => line['County'],
+#					},
+#					:current_address => line['IsCurrent'],
+#					:valid_from      => valid_from,
+#					:valid_to        => valid_to
+#				}
+#	
+#	#			if attributes[:address_attributes][:city].blank?
+#	#				attributes[:address_attributes][:city] = "NoneGiven"
+#	#			end
+#	#			if attributes[:address_attributes][:state].blank?
+#	#				attributes[:address_attributes][:state] = "NoneGiven"
+#	#			end
+#	#			if attributes[:address_attributes][:zip].blank?
+#	#				attributes[:address_attributes][:zip] = "00000"
+#	#			end
+#	
+#				identifier = Identifier.find_by_childid(line['ChildID'])
+#				unless identifier
+#					error_file.puts line
+#					error_file.puts "No identifier found with childid = #{line['ChildID']}" 
+#					error_file.puts "Addressing creation not attempted"
+#					error_file.puts
+#				else
+#	#				addressing = identifier.study_subject.addressings.create!(attributes)
+#					addressing = identifier.study_subject.addressings.new(attributes)
+#	#	one won't be valid, so skip validations for all
+#					addressing.save(false)
+#				end
+#			end	#	FasterCSV.open
+#			error_file.close
+#		end		#	task :homex_addresses => :environment do
+#	
+#	
+#	  	  	
+#		desc "Import data from homex_interviews.csv file"
+#		task :homex_interviews => :environment do
+#			puts "Importing homex_interviews"
+#	
+#			error_file = File.open('homex_interviews_errors.txt','w')
+#	
+#			#	DO NOT COMMENT OUT THE HEADER LINE OR IT RAISES CRYPTIC ERROR
+#			(f=FasterCSV.open("#{BASEDIR}/homex_interviews.csv", 'rb',{
+#				:headers => true })).each do |line|
+#				puts "Processing line #{f.lineno}"
+#				puts line
+#	
+#				#	"subjectID","Questionnaire","began_on","ended_on","consented_on",
+#				#		"intro letter sent","instrument_version_id","interview_method_id"
+#	
+#				began_on = (line['began_on'].blank?) ? 
+#					nil : Time.parse(line['began_on'])
+#				ended_on = (line['ended_on'].blank?) ? 
+#					nil : Time.parse(line['ended_on'])
+#				consented_on = (line['consented_on'].blank?) ? 
+#					nil : Time.parse(line['consented_on'])
+#				letter_sent_on = (line['intro letter sent'].blank?) ? 
+#					nil : Time.parse(line['intro letter sent'])
+#	
+#				attributes = {
+#					:began_on => began_on,
+#					:ended_on => ended_on,
+#	#				:consented_on => consented_on,
+#					:intro_letter_sent_on => letter_sent_on,
+#					:instrument_version_id => line['instrument_version_id'],
+#					:interview_method_id => line['interview_method_id']
+#				}
+#	
+#				identifier = Identifier.find_by_subjectid(sprintf("%06d",line['subjectID'].to_i))
+#				unless identifier
+#					error_file.puts line
+#					error_file.puts "No identifier found with subjectid = #{line['subjectID']}" 
+#					error_file.puts
+#				else
+#					identifier.study_subject.interviews.create!(attributes)
+#				end
+#			end	#	FasterCSV.open
+#			error_file.close
+#		end		#	task :homex_interviews => :environment do
+#	
+#	
+#		desc "Import data from homex_outcomes.csv file"
+#		task :homex_outcomes => :environment do
+#			puts "Importing homex_outcomes"
+#	
+#			error_file = File.open('homex_outcomes_errors.txt','w')
+#	
+#			#	DO NOT COMMENT OUT THE HEADER LINE OR IT RAISES CRYPTIC ERROR
+#			(f=FasterCSV.open("#{BASEDIR}/homex_outcomes.csv", 'rb',{
+#				:headers => true })).each do |line|
+#				puts "Processing line #{f.lineno}"
+#				puts line
+#	
+#				#	"id","position","childID","subjectid","sample_outcome_id","sample_outcome_on",
+#				#		"interview_outcome_id","interview_outcome_on","created_at","updated_at"
+#				sample_outcome_on = (line['sample_outcome_on'].blank?) ? 
+#					nil : Time.parse(line['sample_outcome_on'])
+#				interview_outcome_on = (line['interview_outcome_on'].blank?) ? 
+#					nil : Time.parse(line['interview_outcome_on'])
+#	
+#				attributes = {
+#					:sample_outcome_id => line['sample_outcome_id'],
+#					:sample_outcome_on => sample_outcome_on,
+#					:interview_outcome_id => line['interview_outcome_id'],
+#					:interview_outcome_on => interview_outcome_on
+#				}
+#	
+#				identifier = Identifier.find_by_subjectid(sprintf("%06d",line['subjectid'].to_i))
+#				unless identifier
+#					error_file.puts line
+#					error_file.puts "No identifier found with subjectid = #{line['subjectid']}" 
+#					error_file.puts
+#				else
+#					identifier.study_subject.create_homex_outcome(attributes) or raise "homex_outcome create failed"
+#				end
+#			end	#	FasterCSV.open
+#			error_file.close
+#		end		#	task :homex_outcomes => :environment do
+#	
+#	
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+#	
+#	
+#	  	  	
+#	
+#	######################################################################
+#	#
+#	#	desc "Import data from contacts.csv file"
+#	#	task :contacts => :environment do
+#	#		puts "Importing contacts"
+#	#
+#	#		error_file = File.open('contacts_errors.txt','w')
+#	#
+#	#		#	DO NOT COMMENT OUT THE HEADER LINE OR IT RAISES CRYPTIC ERROR
+#	#		(f=FasterCSV.open("#{BASEDIR}/contacts.csv", 'rb',{
+#	#			:headers => true })).each do |line|
+#	#			puts "Processing line #{f.lineno}"
+#	#			puts line
+#	#
+#	#			#	"ID","Review","ReviewNotes","DataSource","AddressType","ChildID","Street","City",
+#	#			#		"State","Zipcode","FIPSCountyCode","County","Original","Interview","IsCurrent",
+#	#			#		"StartDate","EndDate","EntryDate","T2KAddressID","childID-deleteme",
+#	#			#		"study_subject_id","t2k_primary_phone","t2k_alt_phone","src_primary_phone",
+#	#			#		"src_alt_phone_1","src_alt_phone_2","src_alt_phone_3"
+#	#
+#	#
+#	#		end	#	FasterCSV.open
+#	#		error_file.close
+#	#	end		#	task :contacts => :environment do
+#	#
+#	#
+#	#	desc "Import data from subjects.csv file"
+#	#	task :subjects => :environment do
+#	#		puts "Importing subjects"
+#	#
+#	#		error_file = File.open('subjects_errors.txt','w')
+#	#
+#	#		#	DO NOT COMMENT OUT THE HEADER LINE OR IT RAISES CRYPTIC ERROR
+#	#		(f=FasterCSV.open("#{BASEDIR}/subjects.csv", 'rb',{
+#	#			:headers => true })).each do |line|
+#	#			puts "Processing line #{f.lineno}"
+#	#			puts line
+#	#
+#	#			#	"study_subject_id","newID","subjectID","childID","Who","subjectType","relatedPatID",
+#	#			#		"matchingID","familyID","relatedChildID","T2K_subjectsTableID"
+#	#
+#	#			attributes = {
+#	#				:identifier_attributes => {
+#	#					:childid           => line['childID'],
+#	#					:subjectid         => line['subjectID'],
+#	#					:matchingid        => line['matchingID'],
+#	#					:familyid          => line['familyID'],
+#	#					:case_control_type => line['subjectType'],
+#	#					:related_childid   => line['relatedChildID']
+#	#				}
+#	#			}
+#	#			StudySubject.create!(attributes)
+#	#
+#	#
+#	#		end	#	FasterCSV.open
+#	#		error_file.close
+#	#	end		#	task :subjects => :environment do
+#	#
+#	#
+#	#	desc "Import data from piis.csv file"
+#	#	task :piis => :environment do
+#	#		puts "Importing piis"
+#	#
+#	#		error_file = File.open('piis_errors.txt','w')
+#	#
+#	#		#	DO NOT COMMENT OUT THE HEADER LINE OR IT RAISES CRYPTIC ERROR
+#	#		(f=FasterCSV.open("#{BASEDIR}/piis.csv", 'rb',{
+#	#			:headers => true })).each do |line|
+#	#			puts "Processing line #{f.lineno}"
+#	#			puts line
+#	#
+#	#			#	"study_subject_id","childID","subjectID","first_name","middle_name","last_name",
+#	#			#		"dob","died_on","state_id_no","mother_first_name","mother_middle_name",
+#	#			#		"mother_last_name","mother_maiden_name","father_first_name","father_middle_name",
+#	#			#		"father_last_name","email"
+#	#
+#	#			dob     = (line['dob'].blank?) ? Chronic.parse('10 years ago') : Time.parse(line['dob'])
+#	##
+#	##	convert dob back to this format to ensure it is the same
+#	##
+#	#			died_on = (line['died_on'].blank?) ? '' : Time.parse(line['died_on'])
+#	##
+#	##	convert died_on back to this format to ensure it is the same
+#	##
+#	#			attributes = {
+#	#				:study_subject_id   => line['study_subject_id'],
+#	#				:first_name         => line['first_name'],
+#	#				:middle_name        => line['middle_name'],
+#	#				:last_name          => line['last_name'],
+#	#				:dob                => dob,
+#	#				:died_on            => died_on,
+#	#				:mother_first_name  => line['mother_first_name'],
+#	#				:mother_middle_name => line['mother_middle_name'],
+#	#				:mother_last_name   => line['mother_last_name'],
+#	#				:mother_maiden_name => line['mother_maiden_name'],
+#	#				:father_first_name  => line['father_first_name'],
+#	#				:father_middle_name => line['father_middle_name'],
+#	#				:father_last_name   => line['father_last_name']
+#	#			}
+#	#			Pii.create!(attributes)
+#	##			pii = Pii.create(attributes)
+#	##			if pii.new_record?
+#	##				error_file.puts line
+#	##				error_file.puts pii.errors.full_messages.to_sentence
+#	##				error_file.puts
+#	##			end
+#	#			
+#	#		end	#	FasterCSV.open
+#	#
+#	#		error_file.close
+#	#
+#	#	end		#	task :piis => :environment do
+#	#
+#	#	desc "Import data from identifiers.csv file"
+#	#	task :identifiers => :environment do
+#	#		puts "Importing identifiers"
+#	#
+#	#		error_file = File.open('identifiers_errors.txt','w')
+#	#
+#	#		#	DO NOT COMMENT OUT THE HEADER LINE OR IT RAISES CRYPTIC ERROR
+#	#		(f=FasterCSV.open("#{BASEDIR}/identifiers.csv", 'rb',{
+#	#			:headers => true })).each do |line|
+#	#			puts "Processing line #{f.lineno}"
+#	#			puts line
+#	#
+#	#			#	"study_subject_id","childID","subjectID","childIDWho","PatID","CaCoType",
+#	#			#		"OrderNo","StudyID","newID","GBID","LabNo-CCLS","LabNo-Wiemels","IDNO-Wiemels",
+#	#			#		"AccessionNo","StateIDNo","StudyID-noHyphen","StudyID-IntegerOnly-noHyphen",
+#	#			#		"ICFMasterID","HospitalIDNo"
+#	#
+#	#			attributes = {
+#	#				:study_subject_id  => line['study_subject_id'],
+#	#				:childid           => line['childID'],
+#	#				:subjectid         => line['subjectID'],
+#	#				:patid             => line['PatID'] || f.lineno,			#	TODO
+#	#				:case_control_type => line['CaCoType'] || 'X',				#	TODO
+#	#				:orderno           => line['OrderNo'] || f.lineno,		#	TODO
+#	#				:state_id_no       => sprintf("%s %d",line['StateIDNo'], f.lineno),	
+#	#
+#	#
+#	#		hospital_no is now in the Patient model
+#	#
+#	#				:hospital_no       => line['HospitalIDNo']
+#	#
+#	#			}
+#	#			Identifier.create!(attributes)
+#	#
+#	##			identifier = Identifier.create(attributes)
+#	##			if identifier.new_record?
+#	##				error_file.puts line
+#	##				error_file.puts identifier.errors.full_messages.to_sentence
+#	##				error_file.puts
+#	##			end
+#	#			
+#	#		end	#	FasterCSV.open
+#	#
+#	#		error_file.close
+#	#
+#	#	end		#	task :identifiers => :environment do
+#	#
+#	#	desc "Import data from enrollments.csv file"
+#	#	task :enrollments => :environment do
+#	#		puts "Importing enrollments"
+#	#
+#	#		error_file = File.open('enrollments_errors.txt','w')
+#	#
+#	#		#	DO NOT COMMENT OUT THE HEADER LINE OR IT RAISES CRYPTIC ERROR
+#	#		(f=FasterCSV.open("#{BASEDIR}/enrollments.csv", 'rb',{
+#	#			:headers => true })).each do |line|
+#	#			puts "Processing line #{f.lineno}"
+#	#			puts line
+#	#
+#	#			#	"study_subject_id","project_id","recruitment_priority","able_to_locate",
+#	#			#		"is_candidate","is_eligible","ineligible_reason_id","ineligible_reason_specify",
+#	#			#		"consented","consented_on","refusal_reason_id","other_refusal_reason",
+#	#			#		"is_chosen","reason_not_chosen","terminated_participation","terminated_reason",
+#	#			#		"is_complete","completed_on","is_closed","reason_closed","notes","created_at",
+#	#			#		"updated_at","document_version_id","project_outcome_id","project_outcome_on",
+#	#			#		"problem","search_outcome","letter_outcome","FinalHomexEnrollmentsID"
+#	#
+#	#			attributes = {
+#	#				:study_subject_id          => line['study_subject_id'],
+#	#				:project_id                => line['project_id'],
+#	#				:recruitment_priority      => line['recruitment_priority'],
+#	#				:able_to_locate            => line['able_to_locate'],
+#	#				:is_candidate              => line['is_candidate'],
+#	#				:is_eligible               => line['is_eligible'],
+#	#				:ineligible_reason_id      => line['ineligible_reason_id'],
+#	#				:ineligible_reason_specify => line['ineligible_reason_specify'],
+#	#				:consented                 => line['consented'],
+#	#				:consented_on              => line['consented_on'],
+#	#				:refusal_reason_id         => line['refusal_reason_id'],
+#	#				:other_refusal_reason      => line['other_refusal_reason'],
+#	#				:is_chosen                 => line['is_chosen'],
+#	#				:reason_not_chosen         => line['reason_not_chosen'],
+#	#				:terminated_participation  => line['terminated_participation'],
+#	#				:terminated_reason         => line['terminated_reason'],
+#	#				:is_complete               => line['is_complete'],
+#	#				:completed_on              => line['completed_on'],
+#	#				:is_closed                 => line['is_closed'],
+#	#				:reason_closed             => line['reason_closed'],
+#	#				:notes                     => line['notes'],
+#	#				:document_version_id       => line['document_version_id'],
+#	#				:project_outcome_id        => line['project_outcome_id'],
+#	#				:project_outcome_on        => line['project_outcome_on']
+#	#			}
+#	#
+#	##puts attributes.inspect
+#	##	Forcing things
+#	##			if attributes[:is_complete] && attributes[:completed_on].blank?
+#	##				attributes[:completed_on] = Date.today 
+#	##			end
+#	##			if attributes[:consented] && attributes[:consented_on].blank?
+#	##				attributes[:consented_on] = Date.today 
+#	##			end
+#	##			if attributes[:is_eligible] == '2' && attributes[:ineligible_reason_id].blank?
+#	##				attributes[:ineligible_reason_id] = IneligibleReason['moved'].id
+#	##			end
+#	##			if attributes[:consented] == '2' && attributes[:refusal_reason_id].blank?
+#	##				attributes[:refusal_reason_id] = RefusalReason['busy'].id
+#	##			end
+#	##			if attributes[:refusal_reason_id] == '7' && attributes[:other_refusal_reason].blank?
+#	##				attributes[:other_refusal_reason] = "unknown"
+#	##			end
+#	##puts attributes.inspect
+#	##			Enrollment.create!(attributes)
+#	#
+#	#			enrollment = Enrollment.create(attributes)
+#	#			if enrollment.new_record?
+#	#				error_file.puts line
+#	#				error_file.puts enrollment.errors.full_messages.to_sentence
+#	#				error_file.puts
+#	#			end
+#	#			
+#	#		end	#	FasterCSV.open
+#	#
+#	#		error_file.close
+#	#
+#	#	end		#	task :enrollments => :environment do
+#	
+#	end