ccls-ccls_engine 3.11.0

data/generators/ccls_engine/templates/fixtures/document_types.yml

@@ -0,0 +1,65 @@
+#
+#	Do not change id or key
+#		'id' could be referenced by existing data
+#		'key' is used in the rails code for searching 
+#
+#	Be Advised.  Yaml fixture labels MUST BE UNIQUE.
+#		If a label is repeated, only the last one will exist.
+#
+#	Read about fixtures at http://ar.rubyonrails.org/classes/Fixtures.html
+#
+homex_consents:
+  id: 1
+  position: 1
+  title: Consents
+  description: consent forms for the ccls study and related projects
+abstract:
+  id: 2
+  position: 2
+  title: abstract data form
+  description: abstract data form
+homex:
+  id: 3
+  position: 3
+  title: home exposures questionnaire
+  description: home exposures questionnaire
+t1interview:
+  id: 4
+  position: 4
+  title: Tier I Interview
+  description: Tier I Interview
+t2interview:
+  id: 5
+  position: 5
+  title:  Tier II Interview
+  description: Tier II Interview
+hsq:
+  id: 6
+  position: 6
+  title: Household Survey Questionnaire
+  description: questionnaire about vacuuming, etc.
+hpi:
+  id: 7
+  position: 7
+  title:  Household Pesticide Inventory
+  description: instrument describing how pesticides were used in the home (by whom, for what purpose, etc.)
+hps:
+  id: 8
+  position: 8
+  title: Household Pesticide Sheet
+  description: inventory sheet describing use of a specific pesticide found in the home
+diet:
+  id: 9
+  position: 9
+  title: instrument for capturing information about maternal diet
+  description: instrument for capturing information about maternal diet
+other:
+  id: 10
+  position: 10
+  title: unspecified or other instrument
+  description: unspecified or other instrument
+dk:
+  id: 11
+  position: 11
+  title: don't know
+  description: don't know

data/generators/ccls_engine/templates/fixtures/document_versions.csv

@@ -0,0 +1,155 @@
+document_type_id,title,language_id,indicator,began_use_on,ended_use_on
+1,MCLB-05112010-eng,1,4/18/2011,5/11/2010,4/18/2011
+1,CHO-1999-eng,1,12/31/1999,12/31/1999,
+1,CHO-2000-eng,1,12/31/2000,12/31/2000,
+1,CHO-2000-span,3,12/31/2000,12/31/2000,
+1,CHO-05282002-eng,1,5/28/2003,5/28/2002,5/28/2003
+1,CHO-10162002-span,3,10/16/2003,10/16/2002,10/16/2003
+1,CHO-06192003-eng,1,6/19/2004,6/19/2003,6/19/2004
+1,CHO-06192003-span,3,6/19/2004,6/19/2003,6/19/2004
+1,CHO-03252004-eng,1,3/25/2006,3/25/2004,3/25/2006
+1,CHO-03252004-span,3,3/25/2005,3/25/2004,3/25/2005
+1,CHO-06162005-eng,1,6/16/2006,6/16/2005,6/16/2006
+1,CHO-06162005-span,3,6/16/2006,6/16/2005,6/16/2006
+1,CHO-06182006-eng,1,6/28/2007,6/18/2006,6/28/2007
+1,CHO-06042007-eng,1,6/27/2008,06/04/2007,06/27/2008
+1,CHO-06042007-span,3,6/27/2008,06/04/2007,06/27/2008
+1,CHO-03252008-eng,1,6/27/2008,03/25/2008,06/27/2008
+1,CHO-06262008-eng,1,6/26/2009,06/26/2008,06/26/2009
+1,CHO-06262008-span,3,6/26/2010,06/26/2008,06/26/2010
+1,CHO-06012009-eng,1,6/25/2010,06/01/2009,06/25/2010
+1,CHO-07072009-span,3,6/25/2010,07/07/2009,06/25/2010
+1,CHO-06242010-eng,1,6/24/2011,06/24/2010,06/24/2011
+1,CHO-06242010-span,3,6/24/2011,06/24/2010,06/24/2011
+1,PCHS-09011999-eng,1,9/1/2000,9/1/1999,9/1/2000
+1,PCHS-08222000-span,3,8/21/2001,8/22/2000,8/21/2001
+1,PCHS-08222000-eng,1,8/21/2001,8/22/2000,8/21/2001
+1,PCHS-09012000-eng,1,9/1/2001,9/1/2000,9/1/2001
+1,PCHS-08142001-span,3,8/13/2002,8/14/2001,8/13/2002
+1,PCHS-08142001-eng,1,8/13/2002,8/14/2001,8/13/2002
+1,PCHS-08132002-span,3,8/12/2003,8/13/2002,8/12/2003
+1,PCHS-08132002-eng,1,8/12/2003,8/13/2002,8/12/2003
+1,PCHS-08122003-span,3,8/11/2004,8/12/2003,8/11/2004
+1,PCHS-08122003-eng,1,8/11/2004,8/12/2003,8/11/2004
+1,PCHS-08102004-span,3,8/9/2005,8/10/2004,8/9/2005
+1,PCHS-08102004-eng,1,8/10/2005,8/10/2004,8/10/2005
+1,PCHS-08092005-span,3,8/8/2006,8/9/2005,8/8/2006
+1,PCHS-08092005-eng,1,8/8/2006,8/9/2005,8/8/2006
+1,PCHS-07262006-span,3,7/25/2007,7/26/2006,7/25/2007
+1,PCHS-07192006-eng,1,7/18/2007,7/19/2006,7/18/2007
+1,PCHS-07182007-span,3,7/17/2008,7/18/2007,7/17/2008
+1,PCHS-07182007-eng,1,7/17/2008,7/18/2007,7/17/2008
+1,PCHS-03192008-span,3,7/17/2008,3/19/2008,7/17/2008
+1,PCHS-03192008-eng,1,7/17/2008,3/19/2008,7/17/2008
+1,PCHS-07162008-span,3,7/15/2009,7/16/2008,7/15/2009
+1,PCHS-07162008-eng,1,7/15/2009,7/16/2008,7/15/2009
+1,PCHS-06172009-span,3,6/16/2010,6/17/2009,6/16/2010
+1,PCHS-06172009-eng,1,6/16/2010,6/17/2009,6/16/2010
+1,PCHS-05122010-span,3,5/11/2011,5/12/2010,5/11/2011
+1,PCHS-05122010-eng,1,5/11/2011,5/12/2010,5/11/2011
+1,PCHS-04132011-span,3,4/12/2012,4/13/2011,4/12/2012
+1,PCHS-04132011-eng,1,4/12/2010,4/13/2011,4/12/2010
+1,KPSC-,1,9/25/2011,10/21/2010,9/25/2011
+1,CHCC-1999-eng,1,12/31/1999,12/31/1999,
+1,CHCC-2000-eng,1,12/31/2000,12/31/2000,
+1,CHCC-04032001-eng,1,4/3/2002,4/3/2001,4/3/2002
+1,CHCC-03062002-eng,1,3/5/2003,3/6/2002,3/5/2003
+1,CHCC-06052002-eng,1,3/5/2003,6/5/2002,3/5/2003
+1,CHCC-06052002-span,3,3/5/2003,6/5/2002,3/5/2003
+1,CHCC-02052003-eng,1,2/4/2004,2/5/2003,2/4/2004
+1,CHCC-02052003-span,3,1/7/2004,2/5/2003,1/7/2004
+1,CHCC-01072004-eng,1,1/6/2005,1/7/2004,1/6/2005
+1,CHCC-01072004-span,3,1/6/2005,1/7/2004,1/6/2005
+1,CHCC-12012004-eng,1,11/30/2005,12/1/2004,11/30/2005
+1,CHCC-01042005-eng,1,11/2/2005,1/4/2005,11/2/2005
+1,CHCC-05242005-eng,1,11/30/2005,5/24/2005,11/30/2005
+1,CHCC-05242005-span,3,11/30/2005,5/24/2005,11/30/2005
+1,CHCC-10052005-eng,1,10/4/2006,10/5/2005,10/4/2006
+1,CHCC-10052005-span,3,10/4/2006,10/5/2005,10/4/2006
+1,CHCC-02272006-eng,1,10/4/2006,2/27/2006,10/4/2006
+1,CHCC-04102006-span,3,10/4/2006,4/10/2006,10/4/2006
+1,CHCC-10042006-eng,1,10/3/2007,10/4/2006,10/3/2007
+1,CHCC-10032006-span,3,10/3/2007,10/3/2006,10/3/2007
+1,CHCC-03202007-eng,1,10/3/2007,3/20/2007,10/3/2007
+1,CHCC-03202007-span,3,10/3/2007,3/20/2007,10/3/2007
+1,CHCC-09052007-eng,1,9/4/2008,09/05/2007,09/04/2008
+1,CHCC-09052007-span,3,9/4/2008,09/05/2007,09/04/2008
+1,CHCC-03132008-eng,1,9/4/2008,03/13/2008,09/04/2008
+1,CHCC-03132008-span,3,9/4/2008,03/13/2008,09/04/2008
+1,CHCC-08132008-eng,1,8/5/2009,08/13/2008,08/05/2009
+1,CHCC-08132008-span,3,8/5/2009,08/13/2008,08/05/2009
+1,CHCC-08052009-eng,1,8/4/2010,08/05/2009,08/04/2010
+1,CHCC-08052009-span,3,8/4/2010,08/05/2009,08/04/2010
+1,CHCC-07072010-eng,1,7/6/2011,07/07/2010,07/06/2011
+1,CHCC-07072010-span,3,7/6/2011,07/07/2010,07/06/2011
+1,KPNC-1996-eng,1,12/31/1996,12/31/1996,
+1,KPNC-1999-eng,1,12/31/1999,12/31/1999,
+1,KPNC-1999-span,3,12/31/1999,12/31/1999,
+1,KPNC-2000-eng,1,12/31/2000,12/31/2000,
+1,KPNC-2000-span,3,12/31/2000,12/31/2000,
+1,KPNC-2001-eng,1,12/31/2001,12/31/2001,
+1,KPNC-2001-span,3,12/31/2001,12/31/2001,
+1,KPNC-06202002-eng,1,3/28/2003,6/20/2002,3/28/2003
+1,KPNC-06202002-span,3,3/28/2003,6/20/2002,3/28/2003
+1,KPNC-08202003-eng,1,3/18/2004,8/20/2003,3/18/2004
+1,KPNC-03282003-eng,1,3/18/2004,3/28/2003,3/18/2004
+1,KPNC-03182004-eng,1,3/17/2005,3/18/2004,3/17/2005
+1,KPNC-02182005-eng,1,2/16/2006,2/18/2005,2/16/2006
+1,KPNC-02182005-span,3,2/16/2006,2/18/2005,2/16/2006
+1,KPNC-08112006-eng,1,2/15/2007,8/11/2006,2/15/2007
+1,KPNC-08112006-span,3,2/15/2007,8/11/2006,2/15/2007
+1,KPNC-02192007-eng,1,2/19/2008,2/19/2007,2/19/2008
+1,KPNC-02192007-span,3,2/19/2008,2/19/2007,2/19/2008
+1,KPNC-05272008-eng,1,8/1/2009,5/27/2008,8/1/2009
+1,KPNC-05272008-span,3,8/1/2009,5/27/2008,8/1/2009
+1,UCD-01052000-eng,1,1/5/2001,1/5/2000,1/5/2001
+1,UCD-11012000-span,3,11/1/2001,11/1/2000,11/1/2001
+1,UCD-11012001-eng,1,10/11/2002,11/1/2001,10/11/2002
+1,UCD-11012001-span,3,10/11/2002,11/1/2001,10/11/2002
+1,UCD-10112002-eng,1,8/25/2003,10/11/2002,8/25/2003
+1,UCD-12182003-span,3,8/25/2004,12/18/2003,8/25/2004
+1,UCD-08252003-eng,1,6/12/2004,8/25/2003,6/12/2004
+1,UCD-07122004-eng,1,7/12/2005,7/12/2004,7/12/2005
+1,UCD-05232005-eng,1,5/23/2006,5/23/2005,5/23/2006
+1,UCD-05082006-eng,1,5/8/2007,5/8/2006,5/8/2007
+1,UCD-04182007-span,3,4/18/2008,4/18/2007,4/18/2008
+1,UCD-04182007-eng,1,4/18/2008,4/18/2007,4/18/2008
+1,UCD-03242008-span,3,3/24/2009,3/24/2008,3/24/2009
+1,UCD-03242008-eng,1,3/24/2009,3/24/2008,3/24/2009
+1,UCD-04092009-span,3,2/22/2010,4/9/2009,2/22/2010
+1,UCD-02232009-eng,1,2/22/2010,2/23/2009,2/22/2010
+1,UCD-02222010-span,3,2/21/2011,2/22/2010,2/21/2011
+1,UCD-02222010-eng,1,2/21/2011,2/22/2010,2/21/2011
+1,UCD-02182011-span,3,2/17/2012,2/18/2011,2/17/2012
+1,UCD-02182011-eng,1,2/17/2012,2/18/2011,2/17/2012
+1,CPMC-03102011-eng,1,2/21/2010,3/10/2011,2/21/2010
+1,UCSF-12201999-eng,1,9/11/2000,12/20/1999,9/11/2000
+1,UCSF-08032000-span,3,8/3/2001,8/3/2000,8/3/2001
+1,UCSF-08032000-eng,1,8/3/2001,8/3/2000,8/3/2001
+1,UCSF-07192001-span,3,7/19/2002,7/19/2001,7/19/2002
+1,UCSF-07192001-eng,1,7/19/2002,7/19/2001,7/19/2002
+1,UCSF-11142002-span,3,7/16/2003,11/14/2002,7/16/2003
+1,UCSF-07302002-eng,1,7/30/2003,7/30/2002,7/30/2003
+1,UCSF-08162002-eng,1,7/16/2003,8/16/2002,7/16/2003
+1,UCSF-05022003-span,3,5/2/2004,5/2/2003,5/2/2004
+1,UCSF-05022003-eng,1,5/2/2004,5/2/2003,5/2/2004
+1,UCSF-08272003-eng,1,8/27/2004,8/27/2003,8/27/2004
+1,UCSF-06172004-span,3,6/17/2005,6/17/2004,6/17/2005
+1,UCSF-06172004-eng,1,6/17/2005,6/17/2004,6/17/2005
+1,UCSF-06242005-eng,1,6/9/2006,6/24/2005,6/9/2006
+1,UCSF-06242005-span,3,6/9/2006,6/24/2005,6/9/2006
+1,UCSF-06202006-eng,1,5/11/2007,6/20/2006,5/11/2007
+1,UCSF-06202006-span,3,5/11/2007,6/20/2006,5/11/2007
+1,UCSF-04262007-eng,1,5/11/2008,4/26/2007,5/11/2008
+1,UCSF-04262007-span,3,5/11/2008,4/26/2007,5/11/2008
+1,UCSF-05082008-span,3,5/11/2009,5/8/2008,5/11/2009
+1,UCSF-05082008-eng,1,5/11/2009,5/8/2008,5/11/2009
+1,UCSF-05122009-span,3,5/12/2010,5/12/2009,5/12/2010
+1,UCSF-05122009-eng,1,5/12/2009,5/12/2009,5/12/2009
+1,UCSF-05112010-span,3,5/12/2011,5/11/2010,5/12/2011
+1,UCSF-05112010-eng,1,5/12/2011,5/11/2010,5/12/2011
+1,RCSD-03032011-eng,1,3/1/2012,3/3/2011,3/1/2012
+1,UCLA-10282010-eng,1,10/27/2011,10/28/2010,10/27/2011
+1,CHOC-11152010-eng,1,10/18/2011,11/15/2010,10/18/2011
+1,CCLS-control-eng,1,,,
+1,CCLS-control-span,3,,,

data/generators/ccls_engine/templates/fixtures/follow_up_types.yml

@@ -0,0 +1,16 @@
+#
+#	Do not change id or key
+#		'id' could be referenced by existing data
+#		'key' is used in the rails code for searching 
+#
+#	Be Advised.  Yaml fixture labels MUST BE UNIQUE.
+#		If a label is repeated, only the last one will exist.
+#
+#	Read about fixtures at http://ar.rubyonrails.org/classes/Fixtures.html
+#
+
+#	1 = New cases ready for control assignment (section_id = 2)
+#	2 = ICF failed to recruit a control -- needs more controls (section_id = 2)
+#	3 = Out of candidate controls -- request USC send new BCs (section_id = 2)
+#	4 = New cases ready for Birth Certificates (section_id = 2)
+

data/generators/ccls_engine/templates/fixtures/hospitals.yml

@@ -0,0 +1,114 @@
+#
+#	Be Advised.  Yaml fixture labels MUST BE UNIQUE.
+#		If a label is repeated, only the last one will exist.
+#
+#	Read about fixtures at http://ar.rubyonrails.org/classes/Fixtures.html
+#
+CPMC:
+  id: 1
+  organization_id: 1
+  has_irb_waiver: 1
+CHCC:
+  id: 2
+  organization_id: 2
+  has_irb_waiver: 1
+CHLA:
+  id: 3
+  organization_id: 3
+  has_irb_waiver: 0
+CHOC:
+  id: 4
+  organization_id: 4
+  has_irb_waiver: 0
+CHOK:
+  id: 5
+  organization_id: 5
+  has_irb_waiver: 1
+CSMC:
+  id: 6
+  organization_id: 6
+  has_irb_waiver: 1
+KPSC:
+  id: 7
+  organization_id: 31
+  has_irb_waiver: 1
+LOMA:
+  id: 8
+  organization_id: 32
+  has_irb_waiver: 1
+LPCH:
+  id: 9
+  organization_id: 9
+  has_irb_waiver: 1
+MCHO:
+  id: 10
+  organization_id: 10
+  has_irb_waiver: 1
+RCSD:
+  id: 11
+  organization_id: 11
+  has_irb_waiver: 1
+SUMH:
+  id: 12
+  organization_id: 12
+  has_irb_waiver: 1
+UCDV:
+  id: 13
+  organization_id: 13
+  has_irb_waiver: 1
+UCLA:
+  id: 14
+  organization_id: 14
+  has_irb_waiver: 0
+UCSF:
+  id: 15
+  organization_id: 15
+  has_irb_waiver: 1
+COTH:
+  id: 16
+  organization_id: 21
+  has_irb_waiver: 1
+KPAN:
+  id: 17
+  organization_id: 22
+  has_irb_waiver: 1
+KPDO:
+  id: 18
+  organization_id: 23
+  has_irb_waiver: 1
+KPFO:
+  id: 19
+  organization_id: 24
+  has_irb_waiver: 1
+KPLA:
+  id: 20
+  organization_id: 25
+  has_irb_waiver: 1
+KPOA:
+  id: 21
+  organization_id: 26
+  has_irb_waiver: 1
+KPRO:
+  id: 22
+  organization_id: 27
+  has_irb_waiver: 1
+KPSA:
+  id: 23
+  organization_id: 28
+  has_irb_waiver: 1
+KPSD:
+  id: 24
+  organization_id: 29
+  has_irb_waiver: 1
+KPSF:
+  id: 25
+  organization_id: 30
+  has_irb_waiver: 1
+unspec:
+  id: 26	# 9
+  organization_id: 33
+  has_irb_waiver: 0
+dk:
+  id: 27	# 10
+  organization_id: 34
+  has_irb_waiver: 0

data/generators/ccls_engine/templates/fixtures/ineligible_reasons.yml

@@ -0,0 +1,35 @@
+#
+#	Do not change id or key
+#		'id' could be referenced by existing data
+#		'key' is used in the rails code for searching 
+#
+#	Be Advised.  Yaml fixture labels MUST BE UNIQUE.
+#		If a label is repeated, only the last one will exist.
+#
+#	Read about fixtures at http://ar.rubyonrails.org/classes/Fixtures.html
+#
+moved:
+  id: 1
+  position: 1
+  key: moved
+  description: subject moved
+vacuum:
+  id: 2
+  position: 2 
+  key: no vacuum
+  description: no vacuum cleaner used (for dust sampling studies)
+other:
+  id: 3
+  position: 3
+  key: other
+  description: other
+nonCA:
+  id: 4
+  position: 4
+  key: newnonCA
+  description: new non-CA subject
+legacy:
+  id: 777
+  position: 5
+  key: legacy
+  description: legacy data import

data/generators/ccls_engine/templates/fixtures/instrument_types.yml

@@ -0,0 +1,26 @@
+#
+#	Do not change id or key
+#		'id' could be referenced by existing data
+#		'key' is used in the rails code for searching 
+#
+#	Be Advised.  Yaml fixture labels MUST BE UNIQUE.
+#		If a label is repeated, only the last one will exist.
+#
+#	Read about fixtures at http://ar.rubyonrails.org/classes/Fixtures.html
+#
+hardcopy:
+  id: 1
+  key: hardcopy
+  description: hard copy questionnaire or assessment form
+online:
+  id: 2
+  key: online
+  description: online form or questionnaire
+other:
+  id: 3
+  key: other
+  description: some other data collection method
+dk:
+  id: 4
+  key: unknown
+  description: instrument type unknown

data/generators/ccls_engine/templates/fixtures/instrument_versions.yml

@@ -0,0 +1,22 @@
+#
+#	Do not change id or key
+#		'id' could be referenced by existing data
+#		'key' is used in the rails code for searching 
+#
+#	Be Advised.  Yaml fixture labels MUST BE UNIQUE.
+#		If a label is repeated, only the last one will exist.
+#
+#	Read about fixtures at http://ar.rubyonrails.org/classes/Fixtures.html
+#
+dk:
+  id: 1
+  position: 1
+  key: unknown
+  description: unable to discern correct version
+phone1:
+  id: 2
+  position: 2
+  instrument_id:  1
+  key: Phone Interview
+  description: Phone Interview - version 1
+

data/generators/ccls_engine/templates/fixtures/instruments.yml

@@ -0,0 +1,22 @@
+#
+#	Do not change id or key
+#		'id' could be referenced by existing data
+#		'key' is used in the rails code for searching 
+#
+#	Be Advised.  Yaml fixture labels MUST BE UNIQUE.
+#		If a label is repeated, only the last one will exist.
+#
+#	Read about fixtures at http://ar.rubyonrails.org/classes/Fixtures.html
+#
+homex:
+  id: 1
+  project_id: 4
+  key: homex
+  name: Home Exposures Interview
+  description: Interview collects data regarding potential environmental exposures in the home to be compared with results of tests of dust sample collected immediately following the interview.
+  interview_method_id: 1
+unknown:
+  id: 2
+  key: unknown
+  name: Unknown instrument used
+  description: We do not know which instrument was used to collect the specified data.