ccls-ccls_engine 3.11.0
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- data/README.rdoc +182 -0
- data/app/models/abstract.rb +181 -0
- data/app/models/abstract_search.rb +50 -0
- data/app/models/abstract_validations.rb +324 -0
- data/app/models/address.rb +70 -0
- data/app/models/address_type.rb +15 -0
- data/app/models/addressing.rb +147 -0
- data/app/models/aliquot.rb +44 -0
- data/app/models/aliquot_sample_format.rb +13 -0
- data/app/models/analysis.rb +14 -0
- data/app/models/bc_request.rb +20 -0
- data/app/models/candidate_control.rb +101 -0
- data/app/models/context.rb +23 -0
- data/app/models/context_data_source.rb +4 -0
- data/app/models/county.rb +16 -0
- data/app/models/data_source.rb +24 -0
- data/app/models/diagnosis.rb +23 -0
- data/app/models/document_type.rb +16 -0
- data/app/models/document_version.rb +27 -0
- data/app/models/enrollment.rb +78 -0
- data/app/models/enrollment_validations.rb +167 -0
- data/app/models/follow_up.rb +16 -0
- data/app/models/follow_up_type.rb +18 -0
- data/app/models/gift_card.rb +22 -0
- data/app/models/gift_card_search.rb +137 -0
- data/app/models/home_exposure_response.rb +24 -0
- data/app/models/homex_outcome.rb +75 -0
- data/app/models/hospital.rb +22 -0
- data/app/models/icf_master_id.rb +30 -0
- data/app/models/icf_master_tracker.rb +217 -0
- data/app/models/icf_master_tracker_change.rb +9 -0
- data/app/models/icf_master_tracker_update.rb +50 -0
- data/app/models/ineligible_reason.rb +26 -0
- data/app/models/instrument.rb +26 -0
- data/app/models/instrument_type.rb +17 -0
- data/app/models/instrument_version.rb +28 -0
- data/app/models/interview.rb +122 -0
- data/app/models/interview_method.rb +17 -0
- data/app/models/interview_outcome.rb +16 -0
- data/app/models/language.rb +28 -0
- data/app/models/live_birth_data_update.rb +142 -0
- data/app/models/operational_event.rb +99 -0
- data/app/models/operational_event_type.rb +31 -0
- data/app/models/organization.rb +28 -0
- data/app/models/patient.rb +63 -0
- data/app/models/patient_validations.rb +118 -0
- data/app/models/person.rb +28 -0
- data/app/models/phone_number.rb +105 -0
- data/app/models/phone_type.rb +15 -0
- data/app/models/project.rb +39 -0
- data/app/models/project_outcome.rb +19 -0
- data/app/models/race.rb +31 -0
- data/app/models/refusal_reason.rb +23 -0
- data/app/models/sample.rb +168 -0
- data/app/models/sample_kit.rb +14 -0
- data/app/models/sample_outcome.rb +16 -0
- data/app/models/sample_temperature.rb +14 -0
- data/app/models/sample_type.rb +37 -0
- data/app/models/search.rb +195 -0
- data/app/models/section.rb +18 -0
- data/app/models/state.rb +25 -0
- data/app/models/study_subject.rb +237 -0
- data/app/models/study_subject_abstracts.rb +47 -0
- data/app/models/study_subject_addresses.rb +34 -0
- data/app/models/study_subject_associations.rb +38 -0
- data/app/models/study_subject_duplicates.rb +111 -0
- data/app/models/study_subject_enrollments.rb +17 -0
- data/app/models/study_subject_homex_outcome.rb +22 -0
- data/app/models/study_subject_identifier.rb +153 -0
- data/app/models/study_subject_interviews.rb +25 -0
- data/app/models/study_subject_languages.rb +21 -0
- data/app/models/study_subject_operational_events.rb +66 -0
- data/app/models/study_subject_patient.rb +177 -0
- data/app/models/study_subject_pii.rb +74 -0
- data/app/models/study_subject_races.rb +25 -0
- data/app/models/study_subject_search.rb +260 -0
- data/app/models/study_subject_validations.rb +116 -0
- data/app/models/subject_language.rb +11 -0
- data/app/models/subject_race.rb +11 -0
- data/app/models/subject_relationship.rb +21 -0
- data/app/models/subject_type.rb +22 -0
- data/app/models/tracing_status.rb +20 -0
- data/app/models/transfer.rb +40 -0
- data/app/models/unit.rb +14 -0
- data/app/models/vital_status.rb +19 -0
- data/app/models/zip_code.rb +36 -0
- data/config/abstract_fields.yml +1038 -0
- data/config/abstract_sections.yml +77 -0
- data/config/home_exposure_response_fields.yml +583 -0
- data/config/icf_master_tracker_update.yml +56 -0
- data/config/live_birth_data_update.yml +56 -0
- data/config/shared_use_db.yml +4 -0
- data/generators/ccls_engine/USAGE +2 -0
- data/generators/ccls_engine/ccls_engine_generator.rb +123 -0
- data/generators/ccls_engine/templates/autotest_ccls_engine.rb +3 -0
- data/generators/ccls_engine/templates/ccls_engine.rake +12 -0
- data/generators/ccls_engine/templates/fixtures/address_types.yml +30 -0
- data/generators/ccls_engine/templates/fixtures/context_data_sources.yml +54 -0
- data/generators/ccls_engine/templates/fixtures/contexts.yml +19 -0
- data/generators/ccls_engine/templates/fixtures/data_sources.yml +40 -0
- data/generators/ccls_engine/templates/fixtures/diagnoses.yml +40 -0
- data/generators/ccls_engine/templates/fixtures/document_types.yml +65 -0
- data/generators/ccls_engine/templates/fixtures/document_versions.csv +155 -0
- data/generators/ccls_engine/templates/fixtures/follow_up_types.yml +16 -0
- data/generators/ccls_engine/templates/fixtures/hospitals.yml +114 -0
- data/generators/ccls_engine/templates/fixtures/ineligible_reasons.yml +35 -0
- data/generators/ccls_engine/templates/fixtures/instrument_types.yml +26 -0
- data/generators/ccls_engine/templates/fixtures/instrument_versions.yml +22 -0
- data/generators/ccls_engine/templates/fixtures/instruments.yml +22 -0
- data/generators/ccls_engine/templates/fixtures/interview_methods.yml +30 -0
- data/generators/ccls_engine/templates/fixtures/interview_outcomes.yml +31 -0
- data/generators/ccls_engine/templates/fixtures/languages.yml +34 -0
- data/generators/ccls_engine/templates/fixtures/operational_event_types.yml +141 -0
- data/generators/ccls_engine/templates/fixtures/organizations.yml +198 -0
- data/generators/ccls_engine/templates/fixtures/people.yml +130 -0
- data/generators/ccls_engine/templates/fixtures/phone_types.yml +30 -0
- data/generators/ccls_engine/templates/fixtures/project_outcomes.yml +25 -0
- data/generators/ccls_engine/templates/fixtures/projects.yml +59 -0
- data/generators/ccls_engine/templates/fixtures/races.yml +52 -0
- data/generators/ccls_engine/templates/fixtures/refusal_reasons.yml +55 -0
- data/generators/ccls_engine/templates/fixtures/sample_outcomes.yml +36 -0
- data/generators/ccls_engine/templates/fixtures/sample_temperatures.yml +16 -0
- data/generators/ccls_engine/templates/fixtures/sample_types.yml +147 -0
- data/generators/ccls_engine/templates/fixtures/sections.yml +31 -0
- data/generators/ccls_engine/templates/fixtures/states.yml +363 -0
- data/generators/ccls_engine/templates/fixtures/subject_relationships.yml +46 -0
- data/generators/ccls_engine/templates/fixtures/subject_types.yml +30 -0
- data/generators/ccls_engine/templates/fixtures/tracing_statuses.yml +30 -0
- data/generators/ccls_engine/templates/fixtures/units.yml +13 -0
- data/generators/ccls_engine/templates/fixtures/vital_statuses.yml +28 -0
- data/generators/ccls_engine/templates/functional/roles_controller_test.rb +142 -0
- data/generators/ccls_engine/templates/functional/sessions_controller_test.rb +19 -0
- data/generators/ccls_engine/templates/functional/users_controller_test.rb +94 -0
- data/generators/ccls_engine/templates/images/sort_down.png +0 -0
- data/generators/ccls_engine/templates/images/sort_up.png +0 -0
- data/generators/ccls_engine/templates/initializer.rb +28 -0
- data/generators/ccls_engine/templates/javascripts/ccls_engine.js +24 -0
- data/generators/ccls_engine/templates/javascripts/jquery-ui.js +763 -0
- data/generators/ccls_engine/templates/javascripts/jquery.js +154 -0
- data/generators/ccls_engine/templates/javascripts/jrails.js +1 -0
- data/generators/ccls_engine/templates/migrations/create_user_invitations.rb +18 -0
- data/generators/ccls_engine/templates/migrations/create_users.rb +33 -0
- data/generators/ccls_engine/templates/migrations/drop_user_invitations.rb +18 -0
- data/generators/ccls_engine/templates/stylesheets/ccls_engine.css +180 -0
- data/generators/ccls_engine/templates/stylesheets/user.css +35 -0
- data/generators/ccls_engine/templates/stylesheets/users.css +23 -0
- data/generators/ccls_engine/templates/unit/core_extension_test.rb +18 -0
- data/generators/ccls_engine/templates/unit/role_test.rb +30 -0
- data/generators/ccls_engine/templates/unit/user_test.rb +321 -0
- data/lib/ccls-ccls_engine.rb +1 -0
- data/lib/ccls_engine.rb +135 -0
- data/lib/ccls_engine/action_view_extension.rb +3 -0
- data/lib/ccls_engine/action_view_extension/base.rb +53 -0
- data/lib/ccls_engine/action_view_extension/form_builder.rb +39 -0
- data/lib/ccls_engine/active_record_extension.rb +2 -0
- data/lib/ccls_engine/active_record_extension/base.rb +70 -0
- data/lib/ccls_engine/active_record_shared.rb +8 -0
- data/lib/ccls_engine/assertions.rb +69 -0
- data/lib/ccls_engine/autotest.rb +54 -0
- data/lib/ccls_engine/ccls_user.rb +117 -0
- data/lib/ccls_engine/core_extension.rb +14 -0
- data/lib/ccls_engine/date_and_time_formats.rb +30 -0
- data/lib/ccls_engine/factories.rb +880 -0
- data/lib/ccls_engine/factory_test_helper.rb +276 -0
- data/lib/ccls_engine/helper.rb +112 -0
- data/lib/ccls_engine/icf_master_tracker_update_test_helper.rb +121 -0
- data/lib/ccls_engine/live_birth_data_update_test_helper.rb +110 -0
- data/lib/ccls_engine/package_test_helper.rb +49 -0
- data/lib/ccls_engine/shared_database.rb +20 -0
- data/lib/ccls_engine/tasks.rb +1 -0
- data/lib/ccls_engine/test_tasks.rb +52 -0
- data/lib/ccls_engine/translation_table.rb +86 -0
- data/lib/shared_migration.rb +5 -0
- data/lib/surveyor/survey_extensions.rb +125 -0
- data/lib/tasks/application.rake +286 -0
- data/lib/tasks/calnet_authenticated.rake +6 -0
- data/lib/tasks/common_lib.rake +7 -0
- data/lib/tasks/database.rake +288 -0
- data/lib/tasks/documentation.rake +71 -0
- data/lib/tasks/homex_import.rake +723 -0
- data/lib/tasks/odms_import.rake +1116 -0
- data/lib/tasks/simply_authorized.rake +6 -0
- data/lib/tasks/ucb_ccls_engine_tasks.rake +4 -0
- data/lib/tasks/use_db.rake +4 -0
- data/rails/init.rb +4 -0
- data/test/unit/ccls/abstract_search_test.rb +150 -0
- data/test/unit/ccls/abstract_test.rb +674 -0
- data/test/unit/ccls/address_test.rb +155 -0
- data/test/unit/ccls/address_type_test.rb +25 -0
- data/test/unit/ccls/addressing_test.rb +466 -0
- data/test/unit/ccls/aliquot_sample_format_test.rb +20 -0
- data/test/unit/ccls/aliquot_test.rb +156 -0
- data/test/unit/ccls/analysis_test.rb +31 -0
- data/test/unit/ccls/bc_request_test.rb +43 -0
- data/test/unit/ccls/candidate_control_test.rb +712 -0
- data/test/unit/ccls/context_data_source_test.rb +26 -0
- data/test/unit/ccls/context_test.rb +40 -0
- data/test/unit/ccls/core_extension_test.rb +17 -0
- data/test/unit/ccls/county_test.rb +34 -0
- data/test/unit/ccls/data_source_test.rb +41 -0
- data/test/unit/ccls/diagnosis_test.rb +51 -0
- data/test/unit/ccls/document_type_test.rb +35 -0
- data/test/unit/ccls/document_version_test.rb +68 -0
- data/test/unit/ccls/enrollment_test.rb +575 -0
- data/test/unit/ccls/follow_up_test.rb +23 -0
- data/test/unit/ccls/follow_up_type_test.rb +34 -0
- data/test/unit/ccls/gift_card_search_test.rb +153 -0
- data/test/unit/ccls/gift_card_test.rb +40 -0
- data/test/unit/ccls/home_exposure_response_test.rb +83 -0
- data/test/unit/ccls/homex_outcome_test.rb +199 -0
- data/test/unit/ccls/hospital_test.rb +102 -0
- data/test/unit/ccls/icf_master_id_test.rb +30 -0
- data/test/unit/ccls/icf_master_tracker_change_test.rb +14 -0
- data/test/unit/ccls/icf_master_tracker_test.rb +132 -0
- data/test/unit/ccls/icf_master_tracker_update_test.rb +176 -0
- data/test/unit/ccls/ineligible_reason_test.rb +48 -0
- data/test/unit/ccls/instrument_test.rb +62 -0
- data/test/unit/ccls/instrument_type_test.rb +39 -0
- data/test/unit/ccls/instrument_version_test.rb +71 -0
- data/test/unit/ccls/interview_method_test.rb +44 -0
- data/test/unit/ccls/interview_outcome_test.rb +34 -0
- data/test/unit/ccls/interview_test.rb +298 -0
- data/test/unit/ccls/language_test.rb +47 -0
- data/test/unit/ccls/live_birth_data_update_test.rb +358 -0
- data/test/unit/ccls/operational_event_test.rb +187 -0
- data/test/unit/ccls/operational_event_type_test.rb +51 -0
- data/test/unit/ccls/organization_test.rb +64 -0
- data/test/unit/ccls/patient_test.rb +538 -0
- data/test/unit/ccls/person_test.rb +55 -0
- data/test/unit/ccls/phone_number_test.rb +244 -0
- data/test/unit/ccls/phone_type_test.rb +32 -0
- data/test/unit/ccls/project_outcome_test.rb +34 -0
- data/test/unit/ccls/project_test.rb +60 -0
- data/test/unit/ccls/race_test.rb +37 -0
- data/test/unit/ccls/refusal_reason_test.rb +52 -0
- data/test/unit/ccls/role_test.rb +26 -0
- data/test/unit/ccls/sample_kit_test.rb +35 -0
- data/test/unit/ccls/sample_outcome_test.rb +34 -0
- data/test/unit/ccls/sample_temperature_test.rb +25 -0
- data/test/unit/ccls/sample_test.rb +363 -0
- data/test/unit/ccls/sample_type_test.rb +58 -0
- data/test/unit/ccls/section_test.rb +34 -0
- data/test/unit/ccls/state_test.rb +31 -0
- data/test/unit/ccls/study_subject_abstracts_test.rb +115 -0
- data/test/unit/ccls/study_subject_addresses_test.rb +93 -0
- data/test/unit/ccls/study_subject_duplicates_test.rb +407 -0
- data/test/unit/ccls/study_subject_enrollments_test.rb +65 -0
- data/test/unit/ccls/study_subject_homex_outcome_test.rb +64 -0
- data/test/unit/ccls/study_subject_identifier_test.rb +439 -0
- data/test/unit/ccls/study_subject_interviews_test.rb +26 -0
- data/test/unit/ccls/study_subject_languages_test.rb +142 -0
- data/test/unit/ccls/study_subject_operational_events_test.rb +53 -0
- data/test/unit/ccls/study_subject_patient_test.rb +249 -0
- data/test/unit/ccls/study_subject_pii_test.rb +278 -0
- data/test/unit/ccls/study_subject_races_test.rb +203 -0
- data/test/unit/ccls/study_subject_search_test.rb +704 -0
- data/test/unit/ccls/study_subject_test.rb +770 -0
- data/test/unit/ccls/subject_language_test.rb +43 -0
- data/test/unit/ccls/subject_race_test.rb +35 -0
- data/test/unit/ccls/subject_relationship_test.rb +43 -0
- data/test/unit/ccls/subject_type_test.rb +40 -0
- data/test/unit/ccls/tracing_status_test.rb +32 -0
- data/test/unit/ccls/transfer_test.rb +81 -0
- data/test/unit/ccls/translation_table_test.rb +40 -0
- data/test/unit/ccls/unit_test.rb +21 -0
- data/test/unit/ccls/user_test.rb +156 -0
- data/test/unit/ccls/vital_status_test.rb +36 -0
- data/test/unit/ccls/zip_code_test.rb +55 -0
- metadata +633 -0
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def random_pos_neg
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[nil,1,2][rand(3)]
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end
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def random_true_or_false
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[true,false][rand(2)]
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end
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def random_yndk
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[nil,1,2,999][rand(4)]
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end
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def random_date
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Date.jd(2440000+rand(15000))
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end
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def random_float
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rand * 100
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end
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def random_sex
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%w( M F )[rand(2)]
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end
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# This is no longer used in this gem, but is used in the apps
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Factory.define :page do |f|
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f.sequence(:path) { |n| "/path#{n}" }
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f.sequence(:menu_en) { |n| "Menu #{n}" }
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f.sequence(:title_en){ |n| "Title #{n}" }
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f.body_en "Page Body"
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end
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Factory.define :user do |f|
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f.sequence(:uid) { |n| "UID#{n}" }
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# f.sequence(:username) { |n| "username#{n}" }
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# f.sequence(:email) { |n| "username#{n}@example.com" }
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# f.password 'V@1!dP@55w0rd'
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# f.password_confirmation 'V@1!dP@55w0rd'
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# f.role_name 'user'
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end
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Factory.define :admin_user, :parent => :user do |f|
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f.administrator true
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end # parent must be defined first
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Factory.define :address do |f|
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f.association :address_type
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f.sequence(:line_1) { |n| "Box #{n}" }
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f.city "Berkeley"
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f.state "CA"
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f.zip "12345"
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end
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Factory.define :mailing_address, :parent => :address do |f|
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f.address_type { AddressType['mailing'] }
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end
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Factory.define :residence_address, :parent => :address do |f|
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f.address_type { AddressType['residence'] }
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end
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Factory.define :addressing do |f|
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f.association :address
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f.association :study_subject
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f.is_valid 1
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f.is_verified false # 2 # 20111110 just noticed that this is boolean and not int for YNDK
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f.updated_at Time.now # to make it dirty
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end
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Factory.define :mailing_addressing, :parent => :addressing do |f|
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f.association :address, :factory => :mailing_address
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f.current_address { YNDK[:no] }
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end
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Factory.define :current_mailing_addressing, :parent => :mailing_addressing do |f|
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f.association :address, :factory => :mailing_address
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f.current_address { YNDK[:yes] }
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end
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Factory.define :residence_addressing, :parent => :addressing do |f|
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f.association :address, :factory => :residence_address
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f.current_address { YNDK[:no] }
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end
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Factory.define :current_residence_addressing, :parent => :residence_addressing do |f|
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f.association :address, :factory => :residence_address
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f.current_address { YNDK[:yes] }
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end
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Factory.define :address_type do |f|
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f.sequence(:key) { |n| "Key#{n}" }
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f.sequence(:description) { |n| "Desc#{n}" }
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end
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Factory.define :aliquot do |f|
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f.association :sample
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f.association :unit
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f.association :owner, :factory => :organization
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end
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Factory.define :aliquot_sample_format do |f|
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f.sequence(:key) { |n| "Key#{n}" }
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f.sequence(:description) { |n| "Desc#{n}" }
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end
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93
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+
|
94
|
+
Factory.define :analysis do |f|
|
95
|
+
f.sequence(:key) { |n| "Key#{n}" }
|
96
|
+
f.sequence(:description) { |n| "Desc#{n}" }
|
97
|
+
end
|
98
|
+
|
99
|
+
Factory.define :bc_request do |f|
|
100
|
+
f.sequence(:notes) { |n| "Notes#{n}" } # forces an update
|
101
|
+
end
|
102
|
+
|
103
|
+
Factory.define :candidate_control do |f|
|
104
|
+
f.first_name "First"
|
105
|
+
f.last_name "Last"
|
106
|
+
f.dob { random_date } #Date.jd(2440000+rand(15000))
|
107
|
+
f.reject_candidate false
|
108
|
+
f.sex { random_sex }
|
109
|
+
end
|
110
|
+
Factory.define :rejected_candidate_control, :parent => :candidate_control do |f|
|
111
|
+
f.reject_candidate true
|
112
|
+
f.rejection_reason "Some test reason"
|
113
|
+
end
|
114
|
+
|
115
|
+
Factory.define :context do |f|
|
116
|
+
f.sequence(:key) { |n| "Key#{n}" }
|
117
|
+
f.sequence(:description) { |n| "Desc#{n}" }
|
118
|
+
end
|
119
|
+
|
120
|
+
Factory.define :context_data_source do |f|
|
121
|
+
f.association :context
|
122
|
+
f.association :data_source
|
123
|
+
end
|
124
|
+
|
125
|
+
Factory.define :county do |f|
|
126
|
+
f.sequence(:name){ |n| "Name #{n}" }
|
127
|
+
f.state_abbrev 'XX'
|
128
|
+
end
|
129
|
+
|
130
|
+
Factory.define :data_source do |f|
|
131
|
+
f.sequence(:key) { |n| "Key#{n}" }
|
132
|
+
f.sequence(:description) { |n| "Desc#{n}" }
|
133
|
+
end
|
134
|
+
|
135
|
+
Factory.define :diagnosis do |f|
|
136
|
+
f.sequence(:key) { |n| "key#{n}"}
|
137
|
+
f.sequence(:code) { |n| n+4 } # 1, 2 and 3 are in the fixtures
|
138
|
+
f.sequence(:description) { |n| "Desc#{n}" }
|
139
|
+
end
|
140
|
+
|
141
|
+
Factory.define :document_type do |f|
|
142
|
+
f.sequence(:title) { |n| "Title#{n}" }
|
143
|
+
end
|
144
|
+
|
145
|
+
Factory.define :document_version do |f|
|
146
|
+
f.sequence(:title) { |n| "Title#{n}" }
|
147
|
+
f.association :document_type
|
148
|
+
end
|
149
|
+
|
150
|
+
Factory.define :subjectless_enrollment, :class => 'Enrollment' do |f|
|
151
|
+
f.association :project
|
152
|
+
end
|
153
|
+
Factory.define :enrollment, :parent => :subjectless_enrollment do |f|
|
154
|
+
f.association :study_subject
|
155
|
+
# f.association :project
|
156
|
+
# f.is_eligible 1 #true
|
157
|
+
# f.is_chosen 1 #true
|
158
|
+
# f.consented 1 #true
|
159
|
+
# f.consented_on Date.yesterday
|
160
|
+
# f.terminated_participation 2 #false
|
161
|
+
# f.is_complete 2 #false
|
162
|
+
end
|
163
|
+
Factory.define :consented_enrollment, :parent => :enrollment do |f|
|
164
|
+
f.consented { YNDK[:yes] } #1 #true
|
165
|
+
f.consented_on Date.yesterday
|
166
|
+
end
|
167
|
+
Factory.define :declined_enrollment, :parent => :enrollment do |f|
|
168
|
+
f.consented { YNDK[:no] } # 2
|
169
|
+
f.consented_on Date.yesterday
|
170
|
+
f.association :refusal_reason
|
171
|
+
end
|
172
|
+
|
173
|
+
Factory.define :follow_up do |f|
|
174
|
+
f.association :section
|
175
|
+
f.association :enrollment
|
176
|
+
f.association :follow_up_type
|
177
|
+
end
|
178
|
+
|
179
|
+
Factory.define :follow_up_type do |f|
|
180
|
+
f.sequence(:key) { |n| "Key#{n}" }
|
181
|
+
f.sequence(:description) { |n| "Desc#{n}" }
|
182
|
+
end
|
183
|
+
|
184
|
+
Factory.define :gift_card do |f|
|
185
|
+
f.sequence(:number){ |n| "#{n}" }
|
186
|
+
end
|
187
|
+
|
188
|
+
# This is no longer used in this gem, but is used in the apps
|
189
|
+
Factory.define :guide do |f|
|
190
|
+
f.sequence(:controller){ |n| "controller#{n}" }
|
191
|
+
f.sequence(:action) { |n| "action#{n}" }
|
192
|
+
f.sequence(:body) { |n| "Body #{n}" }
|
193
|
+
end
|
194
|
+
|
195
|
+
Factory.define :home_exposure_response do |f|
|
196
|
+
f.association :study_subject
|
197
|
+
end
|
198
|
+
|
199
|
+
Factory.define :homex_outcome do |f|
|
200
|
+
# 20111110 - don't know why this was explicitly set
|
201
|
+
# They are explicitly set solely for testing OTHER models.
|
202
|
+
# interview_outcome_on is required for the InterviewOutcome test
|
203
|
+
# sample_outcome_on is required for the SampleOutcome test
|
204
|
+
f.sample_outcome_on Date.today
|
205
|
+
f.interview_outcome_on Date.today
|
206
|
+
end
|
207
|
+
|
208
|
+
Factory.define :hospital do |f|
|
209
|
+
f.association :organization
|
210
|
+
end
|
211
|
+
Factory.define :waivered_hospital, :parent => :hospital do |f|
|
212
|
+
f.has_irb_waiver true
|
213
|
+
end
|
214
|
+
Factory.define :nonwaivered_hospital, :parent => :hospital do |f|
|
215
|
+
f.has_irb_waiver false
|
216
|
+
end
|
217
|
+
|
218
|
+
Factory.define :icf_master_id do |f|
|
219
|
+
end
|
220
|
+
|
221
|
+
Factory.define :icf_master_tracker do |f|
|
222
|
+
f.sequence(:Masterid){|n| "#{n}"} # in order to test uniqueness, MUST BE HERE
|
223
|
+
end
|
224
|
+
Factory.define :icf_master_tracker_change do |f|
|
225
|
+
f.sequence(:icf_master_id){|n| "#{n}"}
|
226
|
+
end
|
227
|
+
Factory.define :icf_master_tracker_update do |f|
|
228
|
+
end
|
229
|
+
|
230
|
+
Factory.define :ineligible_reason do |f|
|
231
|
+
f.sequence(:key) { |n| "Key#{n}" }
|
232
|
+
f.sequence(:description) { |n| "Desc#{n}" }
|
233
|
+
end
|
234
|
+
|
235
|
+
Factory.define :instrument do |f|
|
236
|
+
f.association :project
|
237
|
+
f.sequence(:key) { |n| "Key#{n}" }
|
238
|
+
f.name 'Instrument Name'
|
239
|
+
f.sequence(:description) { |n| "Desc#{n}" }
|
240
|
+
end
|
241
|
+
|
242
|
+
Factory.define :instrument_type do |f|
|
243
|
+
f.sequence(:key) { |n| "Key#{n}" }
|
244
|
+
f.sequence(:description) { |n| "Desc#{n}" }
|
245
|
+
f.association :project
|
246
|
+
end
|
247
|
+
|
248
|
+
Factory.define :instrument_version do |f|
|
249
|
+
f.sequence(:key) { |n| "Key#{n}" }
|
250
|
+
f.sequence(:description) { |n| "Desc#{n}" }
|
251
|
+
f.association :instrument_type
|
252
|
+
end
|
253
|
+
|
254
|
+
Factory.define :interview_method do |f|
|
255
|
+
f.sequence(:key) { |n| "Key#{n}" }
|
256
|
+
f.sequence(:description) { |n| "Desc#{n}" }
|
257
|
+
end
|
258
|
+
|
259
|
+
Factory.define :interview_outcome do |f|
|
260
|
+
f.sequence(:key) { |n| "Key#{n}" }
|
261
|
+
f.sequence(:description) { |n| "Desc#{n}" }
|
262
|
+
end
|
263
|
+
|
264
|
+
Factory.define :interview do |f|
|
265
|
+
f.association :study_subject
|
266
|
+
end
|
267
|
+
|
268
|
+
Factory.define :live_birth_data_update do |f|
|
269
|
+
end
|
270
|
+
|
271
|
+
Factory.define :language do |f|
|
272
|
+
f.sequence(:key) { |n| "Key#{n}" }
|
273
|
+
f.sequence(:code) { |n| "Code#{n}" }
|
274
|
+
f.sequence(:description) { |n| "Desc#{n}" }
|
275
|
+
end
|
276
|
+
|
277
|
+
Factory.define :operational_event do |f|
|
278
|
+
f.association :enrollment, :factory => :subjectless_enrollment
|
279
|
+
f.association :operational_event_type
|
280
|
+
end
|
281
|
+
|
282
|
+
Factory.define :operational_event_type do |f|
|
283
|
+
f.sequence(:key) { |n| "Key#{n}" }
|
284
|
+
f.sequence(:description) { |n| "Desc#{n}" }
|
285
|
+
f.sequence(:event_category) { |n| "Cat#{n}" }
|
286
|
+
end
|
287
|
+
|
288
|
+
Factory.define :organization do |f|
|
289
|
+
f.sequence(:key) { |n| "Key #{n}" }
|
290
|
+
f.sequence(:name) { |n| "Name #{n}" }
|
291
|
+
end
|
292
|
+
|
293
|
+
Factory.define :subjectless_patient, :class => 'Patient' do |f|
|
294
|
+
# Today should always be after the dob.
|
295
|
+
# However, with all of the date chronology tests, still may cause problems.
|
296
|
+
f.admit_date Date.today
|
297
|
+
|
298
|
+
# in order to test presence or uniqueness, MUST BE HERE
|
299
|
+
f.sequence(:hospital_no){|n| "#{n}"}
|
300
|
+
|
301
|
+
# Doing it this way will actually include organization_id
|
302
|
+
# in the Factory.attributes_for(:patient) method.
|
303
|
+
# Of course, it requires that there actually be an Organization.
|
304
|
+
# f.association :organization
|
305
|
+
# f.organization { Organization.first }
|
306
|
+
# f.organization_id { Organization.first.id }
|
307
|
+
|
308
|
+
# f.organization_id { Hospital.first.organization_id } # make this a sequence rather than just first?
|
309
|
+
# This sequence seems to work, but lets see if it has any repercusions. May have to modify
|
310
|
+
# some other existing tests that may have expected it not to change.
|
311
|
+
f.sequence(:organization_id){|n| Hospital.all()[ n % Hospital.count ].organization_id }
|
312
|
+
|
313
|
+
f.diagnosis_id { Diagnosis['ALL'].id }
|
314
|
+
end
|
315
|
+
Factory.define :patient, :parent => :subjectless_patient do |f|
|
316
|
+
# really don't see the point of a patient w/o a study_subject
|
317
|
+
f.association :study_subject, :factory => :case_study_subject
|
318
|
+
end
|
319
|
+
Factory.define :waivered_patient, :parent => :patient do |f|
|
320
|
+
# f.organization_id { Hospital.waivered.first.organization_id } # make this a sequence rather than just first?
|
321
|
+
f.sequence(:organization_id){|n| Hospital.waivered()[ n % Hospital.waivered.length ].organization_id }
|
322
|
+
end
|
323
|
+
Factory.define :nonwaivered_patient, :parent => :patient do |f|
|
324
|
+
# f.organization_id { Hospital.nonwaivered.first.organization_id } # make this a sequence rather than just first?
|
325
|
+
f.sequence(:organization_id){|n| Hospital.nonwaivered()[ n % Hospital.nonwaivered.length ].organization_id }
|
326
|
+
end
|
327
|
+
|
328
|
+
Factory.define :person do |f|
|
329
|
+
# use sequence so will actually update
|
330
|
+
f.sequence(:last_name){|n| "LastName#{n}"}
|
331
|
+
end
|
332
|
+
|
333
|
+
Factory.define :phone_number do |f|
|
334
|
+
f.association :study_subject
|
335
|
+
f.association :phone_type
|
336
|
+
f.sequence(:phone_number){|n| sprintf("%010d",n) }
|
337
|
+
f.is_valid 1
|
338
|
+
f.is_verified false # 2 # 20111110 just noticed that this is boolean and not int for YNDK
|
339
|
+
end
|
340
|
+
|
341
|
+
Factory.define :phone_type do |f|
|
342
|
+
f.sequence(:key) { |n| "Key#{n}" }
|
343
|
+
f.sequence(:description) { |n| "Desc#{n}" }
|
344
|
+
end
|
345
|
+
|
346
|
+
Factory.define :project_outcome do |f|
|
347
|
+
f.sequence(:key) { |n| "Key#{n}" }
|
348
|
+
# f.sequence(:code) { |n| "Code#{n}" }
|
349
|
+
f.sequence(:description) { |n| "Desc#{n}" }
|
350
|
+
end
|
351
|
+
|
352
|
+
Factory.define :project do |f|
|
353
|
+
f.sequence(:key) { |n| "Key#{n}" }
|
354
|
+
f.sequence(:description) { |n| "Desc#{n}" }
|
355
|
+
end
|
356
|
+
|
357
|
+
Factory.define :race do |f|
|
358
|
+
f.sequence(:key) {|n| "key#{n}"}
|
359
|
+
f.sequence(:code) {|n| "Race#{n}"}
|
360
|
+
f.sequence(:description){|n| "Desc#{n}"}
|
361
|
+
end
|
362
|
+
|
363
|
+
Factory.define :refusal_reason do |f|
|
364
|
+
f.sequence(:key) { |n| "Key#{n}" }
|
365
|
+
f.sequence(:description) { |n| "Desc#{n}" }
|
366
|
+
end
|
367
|
+
|
368
|
+
Factory.define :sample_kit do |f|
|
369
|
+
f.association :sample
|
370
|
+
end
|
371
|
+
|
372
|
+
Factory.define :sample_outcome do |f|
|
373
|
+
f.sequence(:key) { |n| "Key#{n}" }
|
374
|
+
f.sequence(:description) { |n| "Desc#{n}" }
|
375
|
+
end
|
376
|
+
|
377
|
+
Factory.define :sample do |f|
|
378
|
+
f.association :study_subject
|
379
|
+
f.association :project
|
380
|
+
f.association :sample_type
|
381
|
+
end
|
382
|
+
|
383
|
+
Factory.define :sample_temperature do |f|
|
384
|
+
f.sequence(:key) { |n| "Key#{n}" }
|
385
|
+
f.sequence(:description) { |n| "Desc#{n}" }
|
386
|
+
end
|
387
|
+
|
388
|
+
Factory.define :sample_type do |f|
|
389
|
+
f.sequence(:key) { |n| "Key#{n}" }
|
390
|
+
f.sequence(:description) { |n| "Desc#{n}" }
|
391
|
+
f.association :parent, :factory => :sample_type_parent
|
392
|
+
end
|
393
|
+
Factory.define :sample_type_parent, :parent => :sample_type do |f|
|
394
|
+
f.parent nil
|
395
|
+
end
|
396
|
+
|
397
|
+
Factory.define :section do |f|
|
398
|
+
f.sequence(:key) { |n| "Key#{n}" }
|
399
|
+
f.sequence(:description) { |n| "Desc#{n}" }
|
400
|
+
end
|
401
|
+
|
402
|
+
Factory.define :state do |f|
|
403
|
+
f.sequence(:code) { |n| "Code#{n}" }
|
404
|
+
f.sequence(:name) { |n| "Name#{n}" }
|
405
|
+
# This is just one character so looping through known unused chars.
|
406
|
+
# This is potentially a problem causer in testing.
|
407
|
+
# fips_state_code is actually 2 chars so could add something
|
408
|
+
# 36 squared is pretty big so ....
|
409
|
+
f.sequence(:fips_state_code){|n|
|
410
|
+
# n += 56 # 56 appears to be the highest code used
|
411
|
+
'ABCDEFGHIJKLMNOPQRSTUVWXYZ'.split('')[n/26] <<
|
412
|
+
'ABCDEFGHIJKLMNOPQRSTUVWXYZ'.split('')[n%26] }
|
413
|
+
# '0123456789ABCDEFGHIJKLMNOPQRSTUVWXYZ'.split('')[n/36] <<
|
414
|
+
# '0123456789ABCDEFGHIJKLMNOPQRSTUVWXYZ'.split('')[n%36] }
|
415
|
+
f.fips_country_code 'US'
|
416
|
+
end
|
417
|
+
|
418
|
+
Factory.define :study_subject do |f|
|
419
|
+
f.association :subject_type
|
420
|
+
f.association :vital_status
|
421
|
+
f.sex { random_sex }
|
422
|
+
f.sequence(:email){|n| "email#{n}@example.com"} # required here only to test uniqueness
|
423
|
+
f.dob { random_date } #Date.jd(2440000+rand(15000))
|
424
|
+
f.sequence(:case_control_type){|n| '123456789'.split('')[n%9] }
|
425
|
+
f.sequence(:state_id_no){|n| "#{n}"}
|
426
|
+
f.sequence(:state_registrar_no){|n| "#{n}"}
|
427
|
+
f.sequence(:local_registrar_no){|n| "#{n}"}
|
428
|
+
f.sequence(:gbid){|n| "#{n}"}
|
429
|
+
f.sequence(:accession_no){|n| "#{n}"}
|
430
|
+
f.sequence(:lab_no_wiemels){|n| "#{n}"}
|
431
|
+
f.sequence(:idno_wiemels){|n| "#{n}"}
|
432
|
+
end
|
433
|
+
Factory.define :case_study_subject, :parent => :study_subject do |f|
|
434
|
+
f.subject_type { SubjectType['Case'] }
|
435
|
+
f.case_control_type 'c'
|
436
|
+
end
|
437
|
+
Factory.define :complete_case_study_subject, :parent => :case_study_subject do |f|
|
438
|
+
# wrap in {} so is a proc/lambda and runs at runtime NOT at definition
|
439
|
+
# when the fixtures have been loaded and these will work.
|
440
|
+
# Only really needed for patient as gets Hospital and Diagnosis.
|
441
|
+
|
442
|
+
# f.patient { Factory.build(:subjectless_patient) }
|
443
|
+
# Either by building subjectless versions(above) or
|
444
|
+
# with nested attributes(below). Both seem to work.
|
445
|
+
# The model must be set to accept nested attributes for
|
446
|
+
# those versions to actually work though.
|
447
|
+
# Using the nested attributes makes for easier merging.
|
448
|
+
# Actually, this mucks up sequencing. Calling this factory twice results in uniqueness validation failures.
|
449
|
+
# If these calls are wrapped in {}, the sequencing is fine. Its all about when its called
|
450
|
+
# and the {} delay the execution of the Factory.attributes_for
|
451
|
+
f.patient_attributes { Factory.attributes_for(:patient) }
|
452
|
+
end
|
453
|
+
Factory.define :complete_waivered_case_study_subject, :parent => :complete_case_study_subject do |f|
|
454
|
+
f.patient_attributes { Factory.attributes_for(:waivered_patient) }
|
455
|
+
end
|
456
|
+
Factory.define :complete_nonwaivered_case_study_subject, :parent => :complete_case_study_subject do |f|
|
457
|
+
f.patient_attributes { Factory.attributes_for(:nonwaivered_patient) }
|
458
|
+
end
|
459
|
+
Factory.define :control_study_subject, :parent => :study_subject do |f|
|
460
|
+
f.subject_type { SubjectType['Control'] }
|
461
|
+
end
|
462
|
+
Factory.define :complete_control_study_subject, :parent => :control_study_subject do |f|
|
463
|
+
end
|
464
|
+
Factory.define :mother_study_subject, :parent => :study_subject do |f|
|
465
|
+
f.subject_type { SubjectType['Mother'] }
|
466
|
+
f.sex 'F'
|
467
|
+
f.case_control_type 'm'
|
468
|
+
end
|
469
|
+
Factory.define :complete_mother_study_subject, :parent => :mother_study_subject do |f|
|
470
|
+
end
|
471
|
+
|
472
|
+
|
473
|
+
Factory.define :subject_language do |f|
|
474
|
+
f.association :study_subject
|
475
|
+
f.association :language
|
476
|
+
end
|
477
|
+
|
478
|
+
Factory.define :subject_race do |f|
|
479
|
+
f.association :study_subject
|
480
|
+
f.association :race
|
481
|
+
end
|
482
|
+
|
483
|
+
Factory.define :subject_relationship do |f|
|
484
|
+
f.sequence(:key) { |n| "Key#{n}" }
|
485
|
+
f.sequence(:description) { |n| "Desc#{n}" }
|
486
|
+
end
|
487
|
+
|
488
|
+
Factory.define :subject_type do |f|
|
489
|
+
f.sequence(:key) { |n| "Key#{n}" }
|
490
|
+
f.sequence(:description) { |n| "Desc#{n}" }
|
491
|
+
end
|
492
|
+
|
493
|
+
Factory.define :tracing_status do |f|
|
494
|
+
f.sequence(:key) { |n| "Key#{n}" }
|
495
|
+
f.sequence(:description) { |n| "Desc#{n}" }
|
496
|
+
end
|
497
|
+
|
498
|
+
Factory.define :transfer do |f|
|
499
|
+
f.association :from_organization, :factory => :organization
|
500
|
+
f.association :to_organization, :factory => :organization
|
501
|
+
f.association :aliquot
|
502
|
+
end
|
503
|
+
|
504
|
+
Factory.define :unit do |f|
|
505
|
+
f.sequence(:key) { |n| "Key#{n}" }
|
506
|
+
f.sequence(:description) { |n| "Desc#{n}" }
|
507
|
+
end
|
508
|
+
|
509
|
+
Factory.define :vital_status do |f|
|
510
|
+
f.sequence(:key) { |n| "key#{n}" }
|
511
|
+
# f.sequence(:code) { |n| n+3 } # 3 in fixtures
|
512
|
+
f.sequence(:description) { |n| "Desc#{n}" }
|
513
|
+
end
|
514
|
+
|
515
|
+
Factory.define :zip_code do |f|
|
516
|
+
f.sequence(:zip_code){ |n| sprintf("X%04d",n) }
|
517
|
+
# f.latitude { random_float() }
|
518
|
+
# f.longitude { random_float() }
|
519
|
+
f.sequence(:city){ |n| sprintf("%05d",n) }
|
520
|
+
f.sequence(:state){ |n| sprintf("%05d",n) }
|
521
|
+
# f.sequence(:county){ |n| sprintf("%05d",n) }
|
522
|
+
f.zip_class "TESTING"
|
523
|
+
end
|
524
|
+
|
525
|
+
|
526
|
+
#
|
527
|
+
# Intended for communication with SRC,
|
528
|
+
# but that doesn't look like it'll be happening now.
|
529
|
+
#
|
530
|
+
Factory.define :import do |f|
|
531
|
+
end
|
532
|
+
Factory.define :export do |f|
|
533
|
+
f.sequence(:childid) { |n| "childid#{n}" }
|
534
|
+
f.sequence(:patid) { |n| "patid#{n}" }
|
535
|
+
end
|
536
|
+
|
537
|
+
|
538
|
+
|
539
|
+
Factory.define :abstract do |f|
|
540
|
+
f.updated_at Time.now # to make it dirty
|
541
|
+
end
|
542
|
+
Factory.define :complete_abstract, :class => 'Abstract' do |f|
|
543
|
+
# f.sequence(:subject_id){|n| n }
|
544
|
+
f.response_day14or28_flag { random_yndk() }
|
545
|
+
f.received_bone_marrow_biopsy { random_yndk() }
|
546
|
+
f.received_h_and_p { random_yndk() }
|
547
|
+
f.received_other_reports { random_yndk() }
|
548
|
+
f.received_discharge_summary { random_yndk() }
|
549
|
+
f.received_chemo_protocol { random_yndk() }
|
550
|
+
f.received_resp_to_therapy { random_yndk() }
|
551
|
+
f.sequence(:received_specify_other_reports){|n| "#{n}"}
|
552
|
+
f.received_bone_marrow_aspirate { random_yndk() }
|
553
|
+
f.received_flow_cytometry { random_yndk() }
|
554
|
+
f.received_ploidy { random_yndk() }
|
555
|
+
f.received_hla_typing { random_yndk() }
|
556
|
+
f.received_cytogenetics { random_yndk() }
|
557
|
+
f.received_cbc { random_yndk() }
|
558
|
+
f.received_csf { random_yndk() }
|
559
|
+
f.received_chest_xray { random_yndk() }
|
560
|
+
f.response_report_found_day_14 { random_yndk() }
|
561
|
+
f.response_report_found_day_28 { random_yndk() }
|
562
|
+
f.response_report_found_day_7 { random_yndk() }
|
563
|
+
f.response_report_on_day_14 { random_date() }
|
564
|
+
f.response_report_on_day_28 { random_date() }
|
565
|
+
f.response_report_on_day_7 { random_date() }
|
566
|
+
f.sequence(:response_classification_day_14){|n| "#{n}"}
|
567
|
+
f.sequence(:response_classification_day_28){|n| "#{n}"}
|
568
|
+
f.sequence(:response_classification_day_7){|n| "#{n}"}
|
569
|
+
f.sequence(:response_blasts_day_14){|n| n }
|
570
|
+
f.sequence(:response_blasts_day_28){|n| n }
|
571
|
+
f.sequence(:response_blasts_day_7){|n| n }
|
572
|
+
f.sequence(:response_blasts_units_day_14){|n| "#{n}"}
|
573
|
+
f.sequence(:response_blasts_units_day_28){|n| "#{n}"}
|
574
|
+
f.sequence(:response_blasts_units_day_7){|n| "#{n}"}
|
575
|
+
f.sequence(:response_in_remission_day_14){|n| n }
|
576
|
+
f.marrow_biopsy_report_found { random_yndk() }
|
577
|
+
f.marrow_biopsy_on { random_date() }
|
578
|
+
f.sequence(:marrow_biopsy_diagnosis){|n| "#{n}"}
|
579
|
+
f.marrow_aspirate_report_found { random_yndk() }
|
580
|
+
f.marrow_aspirate_taken_on { random_date() }
|
581
|
+
f.sequence(:marrow_aspirate_diagnosis){|n| "#{n}"}
|
582
|
+
f.sequence(:response_marrow_kappa_day_14){|n| n }
|
583
|
+
f.sequence(:response_marrow_kappa_day_7){|n| n }
|
584
|
+
f.sequence(:response_marrow_lambda_day_14){|n| n }
|
585
|
+
f.sequence(:response_marrow_lambda_day_7){|n| n }
|
586
|
+
f.cbc_report_found { random_yndk() }
|
587
|
+
f.cbc_report_on { random_date() }
|
588
|
+
f.cbc_white_blood_count { rand*1000 }
|
589
|
+
f.sequence(:cbc_percent_blasts){|n| n }
|
590
|
+
f.cbc_percent_blasts_unknown { random_true_or_false() }
|
591
|
+
f.sequence(:cbc_number_blasts){|n| n }
|
592
|
+
f.cbc_hemoglobin_level { rand*1000 }
|
593
|
+
f.sequence(:cbc_platelet_count){|n| n }
|
594
|
+
f.cerebrospinal_fluid_report_found { random_yndk() }
|
595
|
+
f.csf_report_on { random_date() }
|
596
|
+
f.sequence(:csf_white_blood_count){|n| n }
|
597
|
+
f.sequence(:csf_white_blood_count_text){|n| "#{n}"}
|
598
|
+
f.sequence(:csf_red_blood_count){|n| n }
|
599
|
+
f.sequence(:csf_red_blood_count_text){|n| "#{n}"}
|
600
|
+
f.sequence(:blasts_are_present){|n| "#{n}"}
|
601
|
+
f.sequence(:number_of_blasts){|n| n }
|
602
|
+
f.sequence(:peripheral_blood_in_csf){|n| "#{n}"}
|
603
|
+
f.sequence(:csf_comment){|n| "#{n}"}
|
604
|
+
f.chemo_protocol_report_found { random_yndk() }
|
605
|
+
f.patient_on_chemo_protocol { random_yndk() }
|
606
|
+
f.sequence(:chemo_protocol_name){|n| "#{n}"}
|
607
|
+
f.sequence(:chemo_protocol_agent_description){|n| "#{n}"}
|
608
|
+
f.sequence(:response_cd10_day_14){|n| "#{n}"}
|
609
|
+
f.sequence(:response_cd10_day_7){|n| "#{n}"}
|
610
|
+
f.sequence(:response_cd13_day_14){|n| "#{n}"}
|
611
|
+
f.sequence(:response_cd13_day_7){|n| "#{n}"}
|
612
|
+
f.sequence(:response_cd14_day_14){|n| "#{n}"}
|
613
|
+
f.sequence(:response_cd14_day_7){|n| "#{n}"}
|
614
|
+
f.sequence(:response_cd15_day_14){|n| "#{n}"}
|
615
|
+
f.sequence(:response_cd15_day_7){|n| "#{n}"}
|
616
|
+
f.sequence(:response_cd19_day_14){|n| "#{n}"}
|
617
|
+
f.sequence(:response_cd19_day_7){|n| "#{n}"}
|
618
|
+
f.sequence(:response_cd19cd10_day_14){|n| "#{n}"}
|
619
|
+
f.sequence(:response_cd19cd10_day_7){|n| "#{n}"}
|
620
|
+
f.sequence(:response_cd1a_day_14){|n| "#{n}"}
|
621
|
+
f.sequence(:response_cd2a_day_14){|n| "#{n}"}
|
622
|
+
f.sequence(:response_cd20_day_14){|n| "#{n}"}
|
623
|
+
f.sequence(:response_cd20_day_7){|n| "#{n}"}
|
624
|
+
f.sequence(:response_cd3a_day_14){|n| "#{n}"}
|
625
|
+
f.sequence(:response_cd3_day_7){|n| "#{n}"}
|
626
|
+
f.sequence(:response_cd33_day_14){|n| "#{n}"}
|
627
|
+
f.sequence(:response_cd33_day_7){|n| "#{n}"}
|
628
|
+
f.sequence(:response_cd34_day_14){|n| "#{n}"}
|
629
|
+
f.sequence(:response_cd34_day_7){|n| "#{n}"}
|
630
|
+
f.sequence(:response_cd4a_day_14){|n| "#{n}"}
|
631
|
+
f.sequence(:response_cd5a_day_14){|n| "#{n}"}
|
632
|
+
f.sequence(:response_cd56_day_14){|n| "#{n}"}
|
633
|
+
f.sequence(:response_cd61_day_14){|n| "#{n}"}
|
634
|
+
f.sequence(:response_cd7a_day_14){|n| "#{n}"}
|
635
|
+
f.sequence(:response_cd8a_day_14){|n| "#{n}"}
|
636
|
+
f.response_day30_is_in_remission { random_yndk() }
|
637
|
+
f.chest_imaging_report_found { random_yndk() }
|
638
|
+
f.chest_imaging_report_on { random_date() }
|
639
|
+
f.mediastinal_mass_present { random_yndk() }
|
640
|
+
f.sequence(:chest_imaging_comment){|n| "#{n}"}
|
641
|
+
f.received_chest_ct { random_yndk() }
|
642
|
+
f.chest_ct_taken_on { random_date() }
|
643
|
+
f.chest_ct_medmass_present { random_yndk() }
|
644
|
+
# f.sequence(:user_id){|n| n }
|
645
|
+
f.cytogen_trisomy10 { random_yndk() }
|
646
|
+
f.cytogen_trisomy17 { random_yndk() }
|
647
|
+
f.cytogen_trisomy21 { random_yndk() }
|
648
|
+
f.is_down_syndrome_phenotype { random_yndk() }
|
649
|
+
f.cytogen_trisomy4 { random_yndk() }
|
650
|
+
f.cytogen_trisomy5 { random_yndk() }
|
651
|
+
f.cytogen_report_found { random_yndk() }
|
652
|
+
f.cytogen_report_on { random_date() }
|
653
|
+
f.sequence(:conventional_karyotype_results){|n| "#{n}"}
|
654
|
+
f.sequence(:normal_cytogen){|n| "#{n}"}
|
655
|
+
f.sequence(:is_cytogen_hosp_fish_t1221_done){|n| "#{n}"}
|
656
|
+
f.sequence(:is_karyotype_normal){|n| "#{n}"}
|
657
|
+
f.sequence(:number_normal_metaphase_karyotype){|n| n }
|
658
|
+
f.sequence(:number_metaphase_tested_karyotype){|n| n }
|
659
|
+
f.sequence(:cytogen_comment){|n| "#{n}"}
|
660
|
+
f.is_verification_complete { random_true_or_false } #[true,false][rand(2)]
|
661
|
+
f.sequence(:discharge_summary){|n| "#{n}"}
|
662
|
+
f.diagnosis_is_b_all { random_yndk() }
|
663
|
+
f.diagnosis_is_t_all { random_yndk() }
|
664
|
+
f.diagnosis_is_all { random_yndk() }
|
665
|
+
f.sequence(:diagnosis_all_type_id){|n| n}
|
666
|
+
f.diagnosis_is_cml { random_yndk() }
|
667
|
+
f.diagnosis_is_cll { random_yndk() }
|
668
|
+
f.diagnosis_is_aml { random_yndk() }
|
669
|
+
f.sequence(:diagnosis_aml_type_id){|n| n}
|
670
|
+
f.diagnosis_is_other { random_yndk() }
|
671
|
+
f.flow_cyto_report_found { random_yndk() }
|
672
|
+
f.sequence(:received_flow_cyto_day_14){|n| n }
|
673
|
+
f.sequence(:received_flow_cyto_day_7){|n| n }
|
674
|
+
f.flow_cyto_report_on { random_date() }
|
675
|
+
f.response_flow_cyto_day_14_on { random_date() }
|
676
|
+
f.response_flow_cyto_day_7_on { random_date() }
|
677
|
+
f.sequence(:flow_cyto_cd10){|n| "#{n}"}
|
678
|
+
f.sequence(:flow_cyto_igm){|n| "#{n}"}
|
679
|
+
f.sequence(:flow_cyto_igm_text){|n| "#{n}"}
|
680
|
+
f.sequence(:flow_cyto_bm_kappa){|n| "#{n}"}
|
681
|
+
f.sequence(:flow_cyto_bm_kappa_text){|n| "#{n}"}
|
682
|
+
f.sequence(:flow_cyto_bm_lambda){|n| "#{n}"}
|
683
|
+
f.sequence(:flow_cyto_bm_lambda_text){|n| "#{n}"}
|
684
|
+
f.sequence(:flow_cyto_cd10_19){|n| "#{n}"}
|
685
|
+
f.sequence(:flow_cyto_cd10_19_text){|n| "#{n}"}
|
686
|
+
f.sequence(:flow_cyto_cd10_text){|n| "#{n}"}
|
687
|
+
f.sequence(:flow_cyto_cd19){|n| "#{n}"}
|
688
|
+
f.sequence(:flow_cyto_cd19_text){|n| "#{n}"}
|
689
|
+
f.sequence(:flow_cyto_cd20){|n| "#{n}"}
|
690
|
+
f.sequence(:flow_cyto_cd20_text){|n| "#{n}"}
|
691
|
+
f.sequence(:flow_cyto_cd21){|n| "#{n}"}
|
692
|
+
f.sequence(:flow_cyto_cd21_text){|n| "#{n}"}
|
693
|
+
f.sequence(:flow_cyto_cd22){|n| "#{n}"}
|
694
|
+
f.sequence(:flow_cyto_cd22_text){|n| "#{n}"}
|
695
|
+
f.sequence(:flow_cyto_cd23){|n| "#{n}"}
|
696
|
+
f.sequence(:flow_cyto_cd23_text){|n| "#{n}"}
|
697
|
+
f.sequence(:flow_cyto_cd24){|n| "#{n}"}
|
698
|
+
f.sequence(:flow_cyto_cd24_text){|n| "#{n}"}
|
699
|
+
f.sequence(:flow_cyto_cd40){|n| "#{n}"}
|
700
|
+
f.sequence(:flow_cyto_cd40_text){|n| "#{n}"}
|
701
|
+
f.sequence(:flow_cyto_surface_ig){|n| "#{n}"}
|
702
|
+
f.sequence(:flow_cyto_surface_ig_text){|n| "#{n}"}
|
703
|
+
f.sequence(:flow_cyto_cd1a){|n| "#{n}"}
|
704
|
+
f.sequence(:flow_cyto_cd1a_text){|n| "#{n}"}
|
705
|
+
f.sequence(:flow_cyto_cd2){|n| "#{n}"}
|
706
|
+
f.sequence(:flow_cyto_cd2_text){|n| "#{n}"}
|
707
|
+
f.sequence(:flow_cyto_cd3){|n| "#{n}"}
|
708
|
+
f.sequence(:flow_cyto_cd3_text){|n| "#{n}"}
|
709
|
+
f.sequence(:flow_cyto_cd4){|n| "#{n}"}
|
710
|
+
f.sequence(:flow_cyto_cd4_text){|n| "#{n}"}
|
711
|
+
f.sequence(:flow_cyto_cd5){|n| "#{n}"}
|
712
|
+
f.sequence(:flow_cyto_cd5_text){|n| "#{n}"}
|
713
|
+
f.sequence(:flow_cyto_cd7){|n| "#{n}"}
|
714
|
+
f.sequence(:flow_cyto_cd7_text){|n| "#{n}"}
|
715
|
+
f.sequence(:flow_cyto_cd8){|n| "#{n}"}
|
716
|
+
f.sequence(:flow_cyto_cd8_text){|n| "#{n}"}
|
717
|
+
f.sequence(:flow_cyto_cd3_cd4){|n| "#{n}"}
|
718
|
+
f.sequence(:flow_cyto_cd3_cd4_text){|n| "#{n}"}
|
719
|
+
f.sequence(:flow_cyto_cd3_cd8){|n| "#{n}"}
|
720
|
+
f.sequence(:flow_cyto_cd3_cd8_text){|n| "#{n}"}
|
721
|
+
f.sequence(:flow_cyto_cd11b){|n| "#{n}"}
|
722
|
+
f.sequence(:flow_cyto_cd11b_text){|n| "#{n}"}
|
723
|
+
f.sequence(:flow_cyto_cd11c){|n| "#{n}"}
|
724
|
+
f.sequence(:flow_cyto_cd11c_text){|n| "#{n}"}
|
725
|
+
f.sequence(:flow_cyto_cd13){|n| "#{n}"}
|
726
|
+
f.sequence(:flow_cyto_cd13_text){|n| "#{n}"}
|
727
|
+
f.sequence(:flow_cyto_cd15){|n| "#{n}"}
|
728
|
+
f.sequence(:flow_cyto_cd15_text){|n| "#{n}"}
|
729
|
+
f.sequence(:flow_cyto_cd33){|n| "#{n}"}
|
730
|
+
f.sequence(:flow_cyto_cd33_text){|n| "#{n}"}
|
731
|
+
f.sequence(:flow_cyto_cd41){|n| "#{n}"}
|
732
|
+
f.sequence(:flow_cyto_cd41_text){|n| "#{n}"}
|
733
|
+
f.sequence(:flow_cyto_cdw65){|n| "#{n}"}
|
734
|
+
f.sequence(:flow_cyto_cdw65_text){|n| "#{n}"}
|
735
|
+
f.sequence(:flow_cyto_cd34){|n| "#{n}"}
|
736
|
+
f.sequence(:flow_cyto_cd34_text){|n| "#{n}"}
|
737
|
+
f.sequence(:flow_cyto_cd61){|n| "#{n}"}
|
738
|
+
f.sequence(:flow_cyto_cd61_text){|n| "#{n}"}
|
739
|
+
f.sequence(:flow_cyto_cd14){|n| "#{n}"}
|
740
|
+
f.sequence(:flow_cyto_cd14_text){|n| "#{n}"}
|
741
|
+
f.sequence(:flow_cyto_glycoa){|n| "#{n}"}
|
742
|
+
f.sequence(:flow_cyto_glycoa_text){|n| "#{n}"}
|
743
|
+
f.sequence(:flow_cyto_cd16){|n| "#{n}"}
|
744
|
+
f.sequence(:flow_cyto_cd16_text){|n| "#{n}"}
|
745
|
+
f.sequence(:flow_cyto_cd56){|n| "#{n}"}
|
746
|
+
f.sequence(:flow_cyto_cd56_text){|n| "#{n}"}
|
747
|
+
f.sequence(:flow_cyto_cd57){|n| "#{n}"}
|
748
|
+
f.sequence(:flow_cyto_cd57_text){|n| "#{n}"}
|
749
|
+
f.sequence(:flow_cyto_cd9){|n| "#{n}"}
|
750
|
+
f.sequence(:flow_cyto_cd9_text){|n| "#{n}"}
|
751
|
+
f.sequence(:flow_cyto_cd25){|n| "#{n}"}
|
752
|
+
f.sequence(:flow_cyto_cd25_text){|n| "#{n}"}
|
753
|
+
f.sequence(:flow_cyto_cd38){|n| "#{n}"}
|
754
|
+
f.sequence(:flow_cyto_cd38_text){|n| "#{n}"}
|
755
|
+
f.sequence(:flow_cyto_cd45){|n| "#{n}"}
|
756
|
+
f.sequence(:flow_cyto_cd45_text){|n| "#{n}"}
|
757
|
+
f.sequence(:flow_cyto_cd71){|n| "#{n}"}
|
758
|
+
f.sequence(:flow_cyto_cd71_text){|n| "#{n}"}
|
759
|
+
f.sequence(:flow_cyto_tdt){|n| "#{n}"}
|
760
|
+
f.sequence(:flow_cyto_tdt_text){|n| "#{n}"}
|
761
|
+
f.sequence(:flow_cyto_hladr){|n| "#{n}"}
|
762
|
+
f.sequence(:flow_cyto_hladr_text){|n| "#{n}"}
|
763
|
+
f.sequence(:flow_cyto_other_marker_1_name){|n| "#{n}"}
|
764
|
+
f.sequence(:flow_cyto_other_marker_1){|n| "#{n}"}
|
765
|
+
f.sequence(:flow_cyto_other_marker_1_text){|n| "#{n}"}
|
766
|
+
f.sequence(:flow_cyto_other_marker_2_name){|n| "#{n}"}
|
767
|
+
f.sequence(:flow_cyto_other_marker_2){|n| "#{n}"}
|
768
|
+
f.sequence(:flow_cyto_other_marker_2_text){|n| "#{n}"}
|
769
|
+
f.sequence(:flow_cyto_other_marker_3_name){|n| "#{n}"}
|
770
|
+
f.sequence(:flow_cyto_other_marker_3){|n| "#{n}"}
|
771
|
+
f.sequence(:flow_cyto_other_marker_3_text){|n| "#{n}"}
|
772
|
+
f.sequence(:flow_cyto_other_marker_4_name){|n| "#{n}"}
|
773
|
+
f.sequence(:flow_cyto_other_marker_4){|n| "#{n}"}
|
774
|
+
f.sequence(:flow_cyto_other_marker_4_text){|n| "#{n}"}
|
775
|
+
f.sequence(:flow_cyto_other_marker_5_name){|n| "#{n}"}
|
776
|
+
f.sequence(:flow_cyto_other_marker_5){|n| "#{n}"}
|
777
|
+
f.sequence(:flow_cyto_other_marker_5_text){|n| "#{n}"}
|
778
|
+
f.sequence(:flow_cyto_remarks){|n| "#{n}"}
|
779
|
+
f.tdt_often_found_flow_cytometry { random_yndk() }
|
780
|
+
f.tdt_report_found { random_yndk() }
|
781
|
+
f.tdt_report_on { random_date() }
|
782
|
+
f.tdt_positive_or_negative { random_pos_neg() }
|
783
|
+
f.sequence(:tdt_numerical_result){|n| n }
|
784
|
+
f.tdt_found_in_flow_cyto_chart { random_true_or_false } #[true,false][rand(2)]
|
785
|
+
f.tdt_found_in_separate_report { random_true_or_false } #[true,false][rand(2)]
|
786
|
+
f.sequence(:response_comment_day_7){|n| "#{n}"}
|
787
|
+
f.sequence(:response_comment_day_14){|n| "#{n}"}
|
788
|
+
f.cytogen_karyotype_done { random_yndk() }
|
789
|
+
f.cytogen_hospital_fish_done { random_yndk() }
|
790
|
+
f.sequence(:hospital_fish_results){|n| "#{n}"}
|
791
|
+
f.cytogen_ucb_fish_done { random_yndk() }
|
792
|
+
f.sequence(:ucb_fish_results){|n| "#{n}"}
|
793
|
+
f.sequence(:response_hladr_day_14){|n| "#{n}"}
|
794
|
+
f.sequence(:response_hladr_day_7){|n| "#{n}"}
|
795
|
+
f.histo_report_found { random_yndk() }
|
796
|
+
f.histo_report_on { random_date() }
|
797
|
+
f.sequence(:histo_report_results){|n| "#{n}"}
|
798
|
+
f.diagnosed_on { random_date() }
|
799
|
+
f.treatment_began_on { random_date() }
|
800
|
+
f.response_is_inconclusive_day_14 { random_yndk() }
|
801
|
+
f.response_is_inconclusive_day_21 { random_yndk() }
|
802
|
+
f.response_is_inconclusive_day_28 { random_yndk() }
|
803
|
+
f.response_is_inconclusive_day_7 { random_yndk() }
|
804
|
+
f.sequence(:abstractor_id){|n| n }
|
805
|
+
f.abstracted_on { random_date() }
|
806
|
+
f.sequence(:reviewer_id){|n| n }
|
807
|
+
f.reviewed_on { random_date() }
|
808
|
+
f.data_entry_done_on { random_date() }
|
809
|
+
# f.sequence(:abstract_version_number){|n| n }
|
810
|
+
f.flow_cyto_num_results_available { random_yndk() }
|
811
|
+
f.sequence(:response_other1_value_day_14){|n| "#{n}"}
|
812
|
+
f.sequence(:response_other1_value_day_7){|n| "#{n}"}
|
813
|
+
f.sequence(:response_other2_value_day_14){|n| "#{n}"}
|
814
|
+
f.sequence(:response_other2_value_day_7){|n| "#{n}"}
|
815
|
+
f.sequence(:response_other3_value_day_14){|n| "#{n}"}
|
816
|
+
f.sequence(:response_other4_value_day_14){|n| "#{n}"}
|
817
|
+
f.sequence(:response_other5_value_day_14){|n| "#{n}"}
|
818
|
+
f.h_and_p_reports_found { random_yndk() }
|
819
|
+
f.is_h_and_p_report_found { random_true_or_false } #[true,false][rand(2)]
|
820
|
+
f.h_and_p_reports_on { random_date() }
|
821
|
+
f.sequence(:physical_neuro){|n| "#{n}"}
|
822
|
+
f.sequence(:physical_other_soft_2){|n| "#{n}"}
|
823
|
+
f.sequence(:vital_status_id){|n| n }
|
824
|
+
f.dod { random_date() }
|
825
|
+
f.discharge_summary_found { random_yndk() }
|
826
|
+
f.sequence(:physical_gingival){|n| "#{n}"}
|
827
|
+
f.sequence(:physical_leukemic_skin){|n| "#{n}"}
|
828
|
+
f.sequence(:physical_lymph){|n| "#{n}"}
|
829
|
+
f.sequence(:physical_spleen){|n| "#{n}"}
|
830
|
+
f.sequence(:physical_testicle){|n| "#{n}"}
|
831
|
+
f.sequence(:physical_other_soft){|n| "#{n}"}
|
832
|
+
f.ploidy_report_found { random_yndk() }
|
833
|
+
f.ploidy_report_on { random_date() }
|
834
|
+
f.sequence(:is_hypodiploid){|n| "#{n}"}
|
835
|
+
f.sequence(:is_hyperdiploid){|n| "#{n}"}
|
836
|
+
f.sequence(:is_diploid){|n| "#{n}"}
|
837
|
+
f.sequence(:dna_index){|n| "#{n}"}
|
838
|
+
f.sequence(:other_dna_measure){|n| "#{n}"}
|
839
|
+
f.sequence(:ploidy_comment){|n| "#{n}"}
|
840
|
+
# f.sequence(:hepatomegaly_present){|n| n }
|
841
|
+
f.hepatomegaly_present{ random_yndk() }
|
842
|
+
# f.sequence(:splenomegaly_present){|n| n }
|
843
|
+
f.splenomegaly_present{ random_yndk() }
|
844
|
+
f.sequence(:response_comment){|n| "#{n}"}
|
845
|
+
f.sequence(:response_other1_name_day_14){|n| "#{n}"}
|
846
|
+
f.sequence(:response_other1_name_day_7){|n| "#{n}"}
|
847
|
+
f.sequence(:response_other2_name_day_14){|n| "#{n}"}
|
848
|
+
f.sequence(:response_other2_name_day_7){|n| "#{n}"}
|
849
|
+
f.sequence(:response_other3_name_day_14){|n| "#{n}"}
|
850
|
+
f.sequence(:response_other4_name_day_14){|n| "#{n}"}
|
851
|
+
f.sequence(:response_other5_name_day_14){|n| "#{n}"}
|
852
|
+
f.sequence(:fab_classification){|n| "#{n}"}
|
853
|
+
f.sequence(:diagnosis_icdo_description){|n| "#{n}"}
|
854
|
+
f.sequence(:diagnosis_icdo_number){|n| "#{n}"}
|
855
|
+
f.sequence(:cytogen_t1221){|n| "#{n}"}
|
856
|
+
f.sequence(:cytogen_inv16){|n| "#{n}"}
|
857
|
+
f.sequence(:cytogen_t119){|n| "#{n}"}
|
858
|
+
f.sequence(:cytogen_t821){|n| "#{n}"}
|
859
|
+
f.sequence(:cytogen_t1517){|n| "#{n}"}
|
860
|
+
f.sequence(:cytogen_is_hyperdiploidy){|n| "#{n}"}
|
861
|
+
f.sequence(:cytogen_chromosome_number){|n| "#{n}"}
|
862
|
+
f.sequence(:cytogen_t922){|n| "#{n}"}
|
863
|
+
f.sequence(:cytogen_other_trans_1){|n| "#{n}"}
|
864
|
+
f.sequence(:cytogen_other_trans_2){|n| "#{n}"}
|
865
|
+
f.sequence(:cytogen_other_trans_3){|n| "#{n}"}
|
866
|
+
f.sequence(:cytogen_other_trans_4){|n| "#{n}"}
|
867
|
+
f.sequence(:cytogen_other_trans_5){|n| "#{n}"}
|
868
|
+
f.sequence(:cytogen_other_trans_6){|n| "#{n}"}
|
869
|
+
f.sequence(:cytogen_other_trans_7){|n| "#{n}"}
|
870
|
+
f.sequence(:cytogen_other_trans_8){|n| "#{n}"}
|
871
|
+
f.sequence(:cytogen_other_trans_9){|n| "#{n}"}
|
872
|
+
f.sequence(:cytogen_other_trans_10){|n| "#{n}"}
|
873
|
+
f.sequence(:response_fab_subtype){|n| "#{n}"}
|
874
|
+
f.sequence(:response_tdt_day_14){|n| "#{n}"}
|
875
|
+
f.sequence(:response_tdt_day_7){|n| "#{n}"}
|
876
|
+
# f.sequence(:abstract_version_description){|n| "#{n}"}
|
877
|
+
f.sequence(:abstract_version_id){|n| n }
|
878
|
+
f.height_at_diagnosis { random_float() }
|
879
|
+
f.weight_at_diagnosis { random_float() }
|
880
|
+
end
|