c_nifti 0.0.1

data/ext/nifticlib/nifticlib-2.0.0/Testing/niftilib/nifti_test2.c

@@ -0,0 +1,32 @@
+/*
+ * nifti_test2 -- this exercises a particular bug, whereby nifti_copy_nim_info was
+ * not working correctly, which left the copy of an image pointing to the same
+ * extension list, which could cause all sorts of grief.
+ */
+#include <nifti1_io.h>
+int main (int argc, char *argv[])
+{
+  /*
+   * create a 'dummy' image
+   */
+  nifti_image *i1 = nifti_simple_init_nim();
+  nifti_image *i2;
+  
+  /*
+   * add an extension to the dummy
+   */
+  static char ext[] = "THIS IS A TEST";
+  nifti_add_extension(i1,ext,sizeof(ext),NIFTI_ECODE_COMMENT);
+  /*
+   * make a new nim from the dummy
+   */
+  i2 = nifti_copy_nim_info(i1);
+  /*
+   * if the bug isn't fixed in niftilib, the second nifti_image_free
+   * will fail because both nims point to the same extensions. With gcc
+   * this will abort inside the standard library
+   */
+  nifti_image_free(i1);
+  nifti_image_free(i2);
+  return 0;
+}

data/ext/nifticlib/nifticlib-2.0.0/Updates.txt

@@ -0,0 +1,110 @@
+
+Updates to the niftilb C package
+
+-----------------------------------------------------------------
+Updates in version 0.3 April 12, 2006
+
+    - added const in appropriate function parameter locations
+    - shortened all string constants below 509 character limit
+    - added nifti_is_complete_filename()
+    - made minor memory fixes
+    - fixed error in QSTR() definition
+    - use nifti_set_filenames() in nifti_convert_nhdr2nim()
+    - added new tests in Testing/niftilib/nifti_test.c
+    - added skip blank extension option to keep 348 byte header
+    - when reading, allow 0 or 1 in dim[] fields above dim[0]
+    - added more tests to nifti_hdr_looks_good()
+    - nifti_tool: added check_hdr and check_nim action options
+
+-----------------------------------------------------------------
+Updates in version 0.4 September 6, 2006
+
+    - for testing, added Testing/Data, Testing/niftilib/nifti_test2.c and
+        Testing/Data/ATestReferenceImageForReadingAndWriting.nii.gz
+      - modified Testing/niftilib/nifti_test.c for better code coverage
+    - added switch for not building unused funcs in nifti_stats.c
+    - modified nifti1_io.c: free(hstr) and clear ext vars
+    - fixed nt=0 case from 1.17 change in nifti_alloc_NBL_mem()
+    - fixed nifti_findhdrname() logic for efirst
+    - all fsliolib files: updated header to make public domain clear
+    - added nifti_set_skip_blank_ext()
+
+-----------------------------------------------------------------
+Updates in version 0.5 May 17, 2007
+
+    - fixed duplication of incuding utils directory for CMake
+    - syncronized with developments in ITK to prepare for building and
+      tar/rpm/dmg packaging with new versions of cmake
+    - added more typecasting to remove compiler warnings
+    - fslio.c: check for NULL return from nifti_image_read()
+    - creation of nifticdf directory, to separate cdf library functions
+      from utils/nifti_stats.c
+    - make system update for nifticdf
+    - modified CMakeBuild system to be compliant with new CPACK mechanism
+      of generating binary distributions
+    - modified CMake system to build shared libraries
+    - modified Makefiles to use ARCH in more cases
+
+-----------------------------------------------------------------
+Updated in version 0.6 August 27, 2007
+
+    - RR allowed for datasets with a single volume > 2^31 bytes
+    - RR allowed for datasets with total size > 2^32 bytes
+    - RR added regression testing under Testing/nifti_regress_test
+    - KF added upper level packaging directory and put Andy Loenings's 
+         rpm spec file in it
+    - HJ Changed default installation path of header files into include/nifti 
+         from CMakeLists.txt
+    - HJ/KW Added exposing Analyze75 orientation codes
+    - HJ/KW Added function to allow any sized subregion of the image to be read 
+         from disk
+    - RR/KF znzlib/config.h incorporated into znzlib.h and removed
+
+-----------------------------------------------------------------
+Updated in version 1.0 December 6, 2007
+
+    - MH added DevPak packaging template for Dev-Cpp IDE
+    - MH added Makefile for cross-compiling for win32 on linux using mingw32
+    - Yaroslav/MH/RR fixed ARM struct alignment problem when byte-swapping
+    - MH fixed short filename problem in FslFileType
+    - RR added RGBA32 type nad NIFTI_ECODE_FREESURFER macros
+    - RR added 5 NIFTI_INTENT codes for GIFTI
+    - RR added nifti_datatype_to_string and similar functionality
+    - MH Simplified CMake configuration to apply same shared library version
+         to all libraries.
+
+-----------------------------------------------------------------
+Updated in version 1.1.0 August 28, 2008
+
+    - RR allowed ANALYZE headers in nifti_hdr_looks_good
+    - RR added nifti_compiled_with_zlib()
+    - RR added nifti_tool ability to add extensions via 'file:FILENAME'
+    - RR added new tests to nifti_regress_test/commands
+    - RR added ANALYZE 7.5 support for swapping
+    - HJ addressed CMake bug listed by ITK at
+         http://www.itk.org/Bug/view.php?id=7530
+         having to do with ITK version numbers for znzlib.
+
+
+-----------------------------------------------------------------
+Updated in version 2.0.0 July 20, 2010
+
+    - RR added nifti_NBL_matches_nim() check for write_bricks()
+    - HJ added casts to suppress compiler warnings
+    - RR added NIFTI_ECODE_PYPICKLE
+    - RR added NIFTI_ECODEs 18-28 for the LONI MiND group
+    - RR added examples/clib_01_read_write.c as a simple library example
+    - RR allow uppercase extension
+    - RR added 4 checks of alloc() returns
+    - RR added NIFTI_ECODE_VOXBO for Dan Kimberg of VoxBo
+    - RR added NIFTI_ECODE_CARET for John Harwell of Caret
+    - RR fixed znzread/write for large files
+    - RR changed nifti_swap_* routines/calls to take size_t
+    - RR fixed nifti_tool.c:nt_read_bricks bsize for large files
+    - MH updated CMakeLists.txt to version 2.0
+
+
+-----------------------------------------------------------------
+Recent Updates
+
+

data/ext/nifticlib/nifticlib-2.0.0/docs/Doxy_nifti.txt

@@ -0,0 +1,123 @@
+# Doxyfile 1.2.4
+
+# This file describes the settings to be used by doxygen for a project
+#
+# All text after a hash (#) is considered a comment and will be ignored
+# The format is:
+#       TAG = value [value, ...]
+# For lists items can also be appended using:
+#       TAG += value [value, ...]
+# Values that contain spaces should be placed between quotes (" ")
+
+#---------------------------------------------------------------------------
+# General configuration options
+#---------------------------------------------------------------------------
+
+# The PROJECT_NAME tag is a single word (or a sequence of words surrounded 
+# by quotes) that should identify the project. 
+
+PROJECT_NAME           = nifti1_io
+
+
+# The OUTPUT_DIRECTORY tag is used to specify the (relative or absolute) 
+# base path where the generated documentation will be put. 
+# If a relative path is entered, it will be relative to the location 
+# where doxygen was started. If left blank the current directory will be used.
+
+OUTPUT_DIRECTORY       = 
+
+
+#---------------------------------------------------------------------------
+# configuration options related to the input files
+#---------------------------------------------------------------------------
+
+# The INPUT tag can be used to specify the files and/or directories that contain 
+# documented source files. You may enter file names like "myfile.cpp" or 
+# directories like "/usr/src/myproject". Separate the files or directories 
+# with spaces. 
+
+INPUT                  = ../fsliolib ../niftilib ../znzlib
+
+# If the value of the INPUT tag contains directories, you can use the 
+# FILE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp 
+# and *.h) to filter out the source-files in the directories. If left 
+# blank all files are included. 
+
+FILE_PATTERNS          = *.c *.h
+
+# The RECURSIVE tag can be used to turn specify whether or not subdirectories 
+# should be searched for input files as well. Possible values are YES and NO. 
+# If left blank NO is used. 
+
+RECURSIVE              = NO
+
+# The EXCLUDE tag can be used to specify files and/or directories that should 
+# excluded from the INPUT source files. This way you can easily exclude a 
+# subdirectory from a directory tree whose root is specified with the INPUT tag. 
+
+EXCLUDE                = testprog.c nifti1_test.c mjtest.c
+
+# If the value of the INPUT tag contains directories, you can use the 
+# EXCLUDE_PATTERNS tag to specify one or more wildcard patterns to exclude 
+# certain files from those directories. 
+
+EXCLUDE_PATTERNS       = 
+
+
+#---------------------------------------------------------------------------
+# configuration options related to the HTML output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_HTML tag is set to YES (the default) Doxygen will 
+# generate HTML output. 
+
+GENERATE_HTML          = YES
+
+# The HTML_OUTPUT tag is used to specify where the HTML docs will be put. 
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be 
+# put in front of it. If left blank `html' will be used as the default path. 
+
+HTML_OUTPUT            = html
+
+
+#---------------------------------------------------------------------------
+# configuration options related to the LaTeX output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_LATEX tag is set to YES (the default) Doxygen will 
+# generate Latex output. 
+
+GENERATE_LATEX         = NO
+
+
+#---------------------------------------------------------------------------
+# configuration options related to the RTF output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_RTF tag is set to YES Doxygen will generate RTF output 
+# The RTF output is optimised for Word 97 and may not look very pretty with 
+# other RTF readers or editors.
+
+GENERATE_RTF           = NO
+
+
+#---------------------------------------------------------------------------
+# configuration options related to the man page output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_MAN tag is set to YES (the default) Doxygen will 
+# generate man pages 
+
+GENERATE_MAN           = NO
+
+#---------------------------------------------------------------------------
+# configuration options related to the XML output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_XML tag is set to YES Doxygen will 
+# generate an XML file that captures the structure of 
+# the code including all documentation. Warning: This feature 
+# is still experimental and very incomplete.
+
+GENERATE_XML           = NO
+

data/ext/nifticlib/nifticlib-2.0.0/docs/Doxyfile.ORIG

@@ -0,0 +1,746 @@
+# Doxyfile 1.2.4
+
+# This file describes the settings to be used by doxygen for a project
+#
+# All text after a hash (#) is considered a comment and will be ignored
+# The format is:
+#       TAG = value [value, ...]
+# For lists items can also be appended using:
+#       TAG += value [value, ...]
+# Values that contain spaces should be placed between quotes (" ")
+
+#---------------------------------------------------------------------------
+# General configuration options
+#---------------------------------------------------------------------------
+
+# The PROJECT_NAME tag is a single word (or a sequence of words surrounded 
+# by quotes) that should identify the project. 
+
+PROJECT_NAME           = 
+
+# The PROJECT_NUMBER tag can be used to enter a project or revision number. 
+# This could be handy for archiving the generated documentation or 
+# if some version control system is used.
+
+PROJECT_NUMBER         = 
+
+# The OUTPUT_DIRECTORY tag is used to specify the (relative or absolute) 
+# base path where the generated documentation will be put. 
+# If a relative path is entered, it will be relative to the location 
+# where doxygen was started. If left blank the current directory will be used.
+
+OUTPUT_DIRECTORY       = 
+
+# The OUTPUT_LANGUAGE tag is used to specify the language in which all 
+# documentation generated by doxygen is written. Doxygen will use this 
+# information to generate all constant output in the proper language. 
+# The default language is English, other supported languages are: 
+# Dutch, French, Italian, Czech, Swedish, German, Finnish, Japanese, 
+# Korean, Hungarian, Norwegian, Spanish, Romanian, Russian, Croatian, 
+# Polish, Portuguese and Slovene.
+
+OUTPUT_LANGUAGE        = English
+
+# If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in 
+# documentation are documented, even if no documentation was available. 
+# Private class members and static file members will be hidden unless 
+# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES 
+
+EXTRACT_ALL            = YES
+
+# If the EXTRACT_PRIVATE tag is set to YES all private members of a class 
+# will be included in the documentation. 
+
+EXTRACT_PRIVATE        = NO
+
+# If the EXTRACT_STATIC tag is set to YES all static members of a file 
+# will be included in the documentation. 
+
+EXTRACT_STATIC         = NO
+
+# If the HIDE_UNDOC_MEMBERS tag is set to YES, Doxygen will hide all 
+# undocumented members of documented classes, files or namespaces. 
+# If set to NO (the default) these members will be included in the 
+# various overviews, but no documentation section is generated. 
+# This option has no effect if EXTRACT_ALL is enabled. 
+
+HIDE_UNDOC_MEMBERS     = NO
+
+# If the HIDE_UNDOC_CLASSES tag is set to YES, Doxygen will hide all 
+# undocumented classes that are normally visible in the class hierarchy. 
+# If set to NO (the default) these class will be included in the various 
+# overviews. This option has no effect if EXTRACT_ALL is enabled. 
+
+HIDE_UNDOC_CLASSES     = NO
+
+# If the BRIEF_MEMBER_DESC tag is set to YES (the default) Doxygen will 
+# include brief member descriptions after the members that are listed in 
+# the file and class documentation (similar to JavaDoc). 
+# Set to NO to disable this. 
+
+BRIEF_MEMBER_DESC      = YES
+
+# If the REPEAT_BRIEF tag is set to YES (the default) Doxygen will prepend 
+# the brief description of a member or function before the detailed description. 
+# Note: if both HIDE_UNDOC_MEMBERS and BRIEF_MEMBER_DESC are set to NO, the 
+# brief descriptions will be completely suppressed. 
+
+REPEAT_BRIEF           = YES
+
+# If the ALWAYS_DETAILED_SEC and REPEAT_BRIEF tags are both set to YES then 
+# Doxygen will generate a detailed section even if there is only a brief 
+# description. 
+
+ALWAYS_DETAILED_SEC    = NO
+
+# If the FULL_PATH_NAMES tag is set to YES then Doxygen will prepend the full 
+# path before files name in the file list and in the header files. If set 
+# to NO the shortest path that makes the file name unique will be used. 
+
+FULL_PATH_NAMES        = NO
+
+# If the FULL_PATH_NAMES tag is set to YES then the STRIP_FROM_PATH tag 
+# can be used to strip a user defined part of the path. Stripping is 
+# only done if one of the specified strings matches the left-hand part of 
+# the path. It is allowed to use relative paths in the argument list.
+
+STRIP_FROM_PATH        = 
+
+# The INTERNAL_DOCS tag determines if documentation 
+# that is typed after a \internal command is included. If the tag is set 
+# to NO (the default) then the documentation will be excluded. 
+# Set it to YES to include the internal documentation. 
+
+INTERNAL_DOCS          = NO
+
+# If the CLASS_DIAGRAMS tag is set to YES (the default) Doxygen will 
+# generate a class diagram (in Html and LaTeX) for classes with base or 
+# super classes. Setting the tag to NO turns the diagrams off. 
+
+CLASS_DIAGRAMS         = YES
+
+# If the SOURCE_BROWSER tag is set to YES then a list of source files will 
+# be generated. Documented entities will be cross-referenced with these sources. 
+
+SOURCE_BROWSER         = NO
+
+# Setting the INLINE_SOURCES tag to YES will include the body 
+# of functions and classes directly in the documentation. 
+
+INLINE_SOURCES         = NO
+
+# Setting the STRIP_CODE_COMMENTS tag to YES (the default) will instruct 
+# doxygen to hide any special comment blocks from generated source code 
+# fragments. Normal C and C++ comments will always remain visible. 
+
+STRIP_CODE_COMMENTS    = YES
+
+# If the CASE_SENSE_NAMES tag is set to NO then Doxygen will only generate 
+# file names in lower case letters. If set to YES upper case letters are also 
+# allowed. This is useful if you have classes or files whose names only differ 
+# in case and if your file system supports case sensitive file names. Windows 
+# users are adviced to set this option to NO.
+
+CASE_SENSE_NAMES       = YES
+
+# If the HIDE_SCOPE_NAMES tag is set to NO (the default) then Doxygen 
+# will show members with their full class and namespace scopes in the 
+# documentation. If set to YES the scope will be hidden. 
+
+HIDE_SCOPE_NAMES       = NO
+
+# If the VERBATIM_HEADERS tag is set to YES (the default) then Doxygen 
+# will generate a verbatim copy of the header file for each class for 
+# which an include is specified. Set to NO to disable this. 
+
+VERBATIM_HEADERS       = YES
+
+# If the SHOW_INCLUDE_FILES tag is set to YES (the default) then Doxygen 
+# will put list of the files that are included by a file in the documentation 
+# of that file. 
+
+SHOW_INCLUDE_FILES     = YES
+
+# If the JAVADOC_AUTOBRIEF tag is set to YES then Doxygen 
+# will interpret the first line (until the first dot) of a JavaDoc-style 
+# comment as the brief description. If set to NO, the JavaDoc 
+# comments  will behave just like the Qt-style comments (thus requiring an 
+# explict @brief command for a brief description. 
+
+JAVADOC_AUTOBRIEF      = NO
+
+# If the INHERIT_DOCS tag is set to YES (the default) then an undocumented 
+# member inherits the documentation from any documented member that it 
+# reimplements. 
+
+INHERIT_DOCS           = YES
+
+# If the INLINE_INFO tag is set to YES (the default) then a tag [inline] 
+# is inserted in the documentation for inline members. 
+
+INLINE_INFO            = YES
+
+# If the SORT_MEMBER_DOCS tag is set to YES (the default) then doxygen 
+# will sort the (detailed) documentation of file and class members 
+# alphabetically by member name. If set to NO the members will appear in 
+# declaration order. 
+
+SORT_MEMBER_DOCS       = YES
+
+# If member grouping is used in the documentation and the DISTRIBUTE_GROUP_DOC 
+# tag is set to YES, then doxygen will reuse the documentation of the first 
+# member in the group (if any) for the other members of the group. By default 
+# all members of a group must be documented explicitly.
+
+DISTRIBUTE_GROUP_DOC   = NO
+
+# The TAB_SIZE tag can be used to set the number of spaces in a tab. 
+# Doxygen uses this value to replace tabs by spaces in code fragments. 
+
+TAB_SIZE               = 8
+
+# The ENABLE_SECTIONS tag can be used to enable conditional 
+# documentation sections, marked by \if sectionname ... \endif. 
+
+ENABLED_SECTIONS       = 
+
+# The GENERATE_TODOLIST tag can be used to enable (YES) or 
+# disable (NO) the todo list. This list is created by putting \todo 
+# commands in the documentation.
+
+GENERATE_TODOLIST      = YES
+
+# The GENERATE_TESTLIST tag can be used to enable (YES) or 
+# disable (NO) the test list. This list is created by putting \test 
+# commands in the documentation.
+
+GENERATE_TESTLIST      = YES
+
+# This tag can be used to specify a number of aliases that acts 
+# as commands in the documentation. An alias has the form "name=value". 
+# For example adding "sideeffect=\par Side Effects:\n" will allow you to 
+# put the command \sideeffect (or @sideeffect) in the documentation, which 
+# will result in a user defined paragraph with heading "Side Effects:". 
+# You can put \n's in the value part of an alias to insert newlines. 
+
+ALIASES                = 
+
+#---------------------------------------------------------------------------
+# configuration options related to warning and progress messages
+#---------------------------------------------------------------------------
+
+# The QUIET tag can be used to turn on/off the messages that are generated 
+# by doxygen. Possible values are YES and NO. If left blank NO is used. 
+
+QUIET                  = NO
+
+# The WARNINGS tag can be used to turn on/off the warning messages that are 
+# generated by doxygen. Possible values are YES and NO. If left blank 
+# NO is used. 
+
+WARNINGS               = YES
+
+# If WARN_IF_UNDOCUMENTED is set to YES, then doxygen will generate warnings 
+# for undocumented members. If EXTRACT_ALL is set to YES then this flag will 
+# automatically be disabled. 
+
+WARN_IF_UNDOCUMENTED   = YES
+
+# The WARN_FORMAT tag determines the format of the warning messages that 
+# doxygen can produce. The string should contain the $file, $line, and $text 
+# tags, which will be replaced by the file and line number from which the 
+# warning originated and the warning text. 
+
+WARN_FORMAT            = "$file:$line: $text"
+
+# The WARN_LOGFILE tag can be used to specify a file to which warning 
+# and error messages should be written. If left blank the output is written 
+# to stderr. 
+
+WARN_LOGFILE           = 
+
+#---------------------------------------------------------------------------
+# configuration options related to the input files
+#---------------------------------------------------------------------------
+
+# The INPUT tag can be used to specify the files and/or directories that contain 
+# documented source files. You may enter file names like "myfile.cpp" or 
+# directories like "/usr/src/myproject". Separate the files or directories 
+# with spaces. 
+
+INPUT                  = 
+
+# If the value of the INPUT tag contains directories, you can use the 
+# FILE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp 
+# and *.h) to filter out the source-files in the directories. If left 
+# blank all files are included. 
+
+FILE_PATTERNS          = 
+
+# The RECURSIVE tag can be used to turn specify whether or not subdirectories 
+# should be searched for input files as well. Possible values are YES and NO. 
+# If left blank NO is used. 
+
+RECURSIVE              = NO
+
+# The EXCLUDE tag can be used to specify files and/or directories that should 
+# excluded from the INPUT source files. This way you can easily exclude a 
+# subdirectory from a directory tree whose root is specified with the INPUT tag. 
+
+EXCLUDE                = 
+
+# If the value of the INPUT tag contains directories, you can use the 
+# EXCLUDE_PATTERNS tag to specify one or more wildcard patterns to exclude 
+# certain files from those directories. 
+
+EXCLUDE_PATTERNS       = 
+
+# The EXAMPLE_PATH tag can be used to specify one or more files or 
+# directories that contain example code fragments that are included (see 
+# the \include command). 
+
+EXAMPLE_PATH           = 
+
+# If the value of the EXAMPLE_PATH tag contains directories, you can use the 
+# EXAMPLE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp 
+# and *.h) to filter out the source-files in the directories. If left 
+# blank all files are included. 
+
+EXAMPLE_PATTERNS       = 
+
+# The IMAGE_PATH tag can be used to specify one or more files or 
+# directories that contain image that are included in the documentation (see 
+# the \image command). 
+
+IMAGE_PATH             = 
+
+# The INPUT_FILTER tag can be used to specify a program that doxygen should 
+# invoke to filter for each input file. Doxygen will invoke the filter program 
+# by executing (via popen()) the command <filter> <input-file>, where <filter> 
+# is the value of the INPUT_FILTER tag, and <input-file> is the name of an 
+# input file. Doxygen will then use the output that the filter program writes 
+# to standard output. 
+
+INPUT_FILTER           = 
+
+# If the FILTER_SOURCE_FILES tag is set to YES, the input filter (if set using 
+# INPUT_FILTER) will be used to filter the input files when producing source 
+# files to browse. 
+
+FILTER_SOURCE_FILES    = NO
+
+#---------------------------------------------------------------------------
+# configuration options related to the alphabetical class index
+#---------------------------------------------------------------------------
+
+# If the ALPHABETICAL_INDEX tag is set to YES, an alphabetical index 
+# of all compounds will be generated. Enable this if the project 
+# contains a lot of classes, structs, unions or interfaces. 
+
+ALPHABETICAL_INDEX     = NO
+
+# If the alphabetical index is enabled (see ALPHABETICAL_INDEX) then 
+# the COLS_IN_ALPHA_INDEX tag can be used to specify the number of columns 
+# in which this list will be split (can be a number in the range [1..20]) 
+
+COLS_IN_ALPHA_INDEX    = 5
+
+# In case all classes in a project start with a common prefix, all 
+# classes will be put under the same header in the alphabetical index. 
+# The IGNORE_PREFIX tag can be used to specify one or more prefixes that 
+# should be ignored while generating the index headers. 
+
+IGNORE_PREFIX          = 
+
+#---------------------------------------------------------------------------
+# configuration options related to the HTML output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_HTML tag is set to YES (the default) Doxygen will 
+# generate HTML output. 
+
+GENERATE_HTML          = YES
+
+# The HTML_OUTPUT tag is used to specify where the HTML docs will be put. 
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be 
+# put in front of it. If left blank `html' will be used as the default path. 
+
+HTML_OUTPUT            = html
+
+# The HTML_HEADER tag can be used to specify a personal HTML header for 
+# each generated HTML page. If it is left blank doxygen will generate a 
+# standard header.
+
+HTML_HEADER            = 
+
+# The HTML_FOOTER tag can be used to specify a personal HTML footer for 
+# each generated HTML page. If it is left blank doxygen will generate a 
+# standard footer.
+
+HTML_FOOTER            = 
+
+# The HTML_STYLESHEET tag can be used to specify a user defined cascading 
+# style sheet that is used by each HTML page. It can be used to 
+# fine-tune the look of the HTML output. If the tag is left blank doxygen 
+# will generate a default style sheet 
+
+HTML_STYLESHEET        = 
+
+# If the HTML_ALIGN_MEMBERS tag is set to YES, the members of classes, 
+# files or namespaces will be aligned in HTML using tables. If set to 
+# NO a bullet list will be used. 
+
+HTML_ALIGN_MEMBERS     = YES
+
+# If the GENERATE_HTMLHELP tag is set to YES, additional index files 
+# will be generated that can be used as input for tools like the 
+# Microsoft HTML help workshop to generate a compressed HTML help file (.chm) 
+# of the generated HTML documentation. 
+
+GENERATE_HTMLHELP      = NO
+
+# The DISABLE_INDEX tag can be used to turn on/off the condensed index at 
+# top of each HTML page. The value NO (the default) enables the index and 
+# the value YES disables it. 
+
+DISABLE_INDEX          = NO
+
+# This tag can be used to set the number of enum values (range [1..20]) 
+# that doxygen will group on one line in the generated HTML documentation. 
+
+ENUM_VALUES_PER_LINE   = 4
+
+# If the GENERATE_TREEVIEW tag is set to YES, a side pannel will be
+# generated containing a tree-like index structure (just like the one that 
+# is generated for HTML Help). For this to work a browser that supports 
+# JavaScript and frames is required (for instance Netscape 4.0+ 
+# or Internet explorer 4.0+). 
+
+GENERATE_TREEVIEW      = NO
+
+# If the treeview is enabled (see GENERATE_TREEVIEW) then this tag can be 
+# used to set the initial width (in pixels) of the frame in which the tree 
+# is shown. 
+
+TREEVIEW_WIDTH         = 250
+
+#---------------------------------------------------------------------------
+# configuration options related to the LaTeX output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_LATEX tag is set to YES (the default) Doxygen will 
+# generate Latex output. 
+
+GENERATE_LATEX         = YES
+
+# The LATEX_OUTPUT tag is used to specify where the LaTeX docs will be put. 
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be 
+# put in front of it. If left blank `latex' will be used as the default path. 
+
+LATEX_OUTPUT           = latex
+
+# If the COMPACT_LATEX tag is set to YES Doxygen generates more compact 
+# LaTeX documents. This may be useful for small projects and may help to 
+# save some trees in general. 
+
+COMPACT_LATEX          = NO
+
+# The PAPER_TYPE tag can be used to set the paper type that is used 
+# by the printer. Possible values are: a4, a4wide, letter, legal and 
+# executive. If left blank a4wide will be used. 
+
+PAPER_TYPE             = a4wide
+
+# The EXTRA_PACKAGES tag can be to specify one or more names of LaTeX 
+# packages that should be included in the LaTeX output. 
+
+EXTRA_PACKAGES         = 
+
+# The LATEX_HEADER tag can be used to specify a personal LaTeX header for 
+# the generated latex document. The header should contain everything until 
+# the first chapter. If it is left blank doxygen will generate a 
+# standard header. Notice: only use this tag if you know what you are doing! 
+
+LATEX_HEADER           = 
+
+# If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated 
+# is prepared for conversion to pdf (using ps2pdf). The pdf file will 
+# contain links (just like the HTML output) instead of page references 
+# This makes the output suitable for online browsing using a pdf viewer. 
+
+PDF_HYPERLINKS         = NO
+
+# If the USE_PDFLATEX tag is set to YES, pdflatex will be used instead of 
+# plain latex in the generated Makefile. Set this option to YES to get a 
+# higher quality PDF documentation. 
+
+USE_PDFLATEX           = NO
+
+# If the LATEX_BATCHMODE tag is set to YES, doxygen will add the \\batchmode. 
+# command to the generated LaTeX files. This will instruct LaTeX to keep 
+# running if errors occur, instead of asking the user for help. 
+# This option is also used when generating formulas in HTML. 
+
+LATEX_BATCHMODE        = NO
+
+#---------------------------------------------------------------------------
+# configuration options related to the RTF output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_RTF tag is set to YES Doxygen will generate RTF output 
+# The RTF output is optimised for Word 97 and may not look very pretty with 
+# other RTF readers or editors.
+
+GENERATE_RTF           = YES
+
+# The RTF_OUTPUT tag is used to specify where the RTF docs will be put. 
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be 
+# put in front of it. If left blank `rtf' will be used as the default path. 
+
+RTF_OUTPUT             = rtf
+
+# If the COMPACT_RTF tag is set to YES Doxygen generates more compact 
+# RTF documents. This may be useful for small projects and may help to 
+# save some trees in general. 
+
+COMPACT_RTF            = NO
+
+# If the RTF_HYPERLINKS tag is set to YES, the RTF that is generated 
+# will contain hyperlink fields. The RTF file will 
+# contain links (just like the HTML output) instead of page references. 
+# This makes the output suitable for online browsing using a WORD or other. 
+# programs which support those fields. 
+# Note: wordpad (write) and others do not support links. 
+
+RTF_HYPERLINKS         = NO
+
+# Load stylesheet definitions from file. Syntax is similar to doxygen's 
+# config file, i.e. a series of assigments. You only have to provide 
+# replacements, missing definitions are set to their default value. 
+
+RTF_STYLESHEET_FILE    = 
+
+#---------------------------------------------------------------------------
+# configuration options related to the man page output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_MAN tag is set to YES (the default) Doxygen will 
+# generate man pages 
+
+GENERATE_MAN           = YES
+
+# The MAN_OUTPUT tag is used to specify where the man pages will be put. 
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be 
+# put in front of it. If left blank `man' will be used as the default path. 
+
+MAN_OUTPUT             = man
+
+# The MAN_EXTENSION tag determines the extension that is added to 
+# the generated man pages (default is the subroutine's section .3) 
+
+MAN_EXTENSION          = .3
+
+#---------------------------------------------------------------------------
+# configuration options related to the XML output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_XML tag is set to YES Doxygen will 
+# generate an XML file that captures the structure of 
+# the code including all documentation. Warning: This feature 
+# is still experimental and very incomplete.
+
+GENERATE_XML           = NO
+
+#---------------------------------------------------------------------------
+# Configuration options related to the preprocessor   
+#---------------------------------------------------------------------------
+
+# If the ENABLE_PREPROCESSING tag is set to YES (the default) Doxygen will 
+# evaluate all C-preprocessor directives found in the sources and include 
+# files. 
+
+ENABLE_PREPROCESSING   = YES
+
+# If the MACRO_EXPANSION tag is set to YES Doxygen will expand all macro 
+# names in the source code. If set to NO (the default) only conditional 
+# compilation will be performed. Macro expansion can be done in a controlled 
+# way by setting EXPAND_ONLY_PREDEF to YES. 
+
+MACRO_EXPANSION        = NO
+
+# If the EXPAND_ONLY_PREDEF and MACRO_EXPANSION tags are both set to YES 
+# then the macro expansion is limited to the macros specified with the 
+# PREDEFINED and EXPAND_AS_PREDEFINED tags. 
+
+EXPAND_ONLY_PREDEF     = NO
+
+# If the SEARCH_INCLUDES tag is set to YES (the default) the includes files 
+# in the INCLUDE_PATH (see below) will be search if a #include is found. 
+
+SEARCH_INCLUDES        = YES
+
+# The INCLUDE_PATH tag can be used to specify one or more directories that 
+# contain include files that are not input files but should be processed by 
+# the preprocessor. 
+
+INCLUDE_PATH           = 
+
+# You can use the INCLUDE_FILE_PATTERNS tag to specify one or more wildcard 
+# patterns (like *.h and *.hpp) to filter out the header-files in the 
+# directories. If left blank, the patterns specified with FILE_PATTERNS will 
+# be used. 
+
+INCLUDE_FILE_PATTERNS  = 
+
+# The PREDEFINED tag can be used to specify one or more macro names that 
+# are defined before the preprocessor is started (similar to the -D option of 
+# gcc). The argument of the tag is a list of macros of the form: name 
+# or name=definition (no spaces). If the definition and the = are 
+# omitted =1 is assumed. 
+
+PREDEFINED             = 
+
+# If the MACRO_EXPANSION and EXPAND_PREDEF_ONLY tags are set to YES then 
+# this tag can be used to specify a list of macro names that should be expanded. 
+# The macro definition that is found in the sources will be used. 
+# Use the PREDEFINED tag if you want to use a different macro definition. 
+
+EXPAND_AS_DEFINED      = 
+
+#---------------------------------------------------------------------------
+# Configuration::addtions related to external references   
+#---------------------------------------------------------------------------
+
+# The TAGFILES tag can be used to specify one or more tagfiles. 
+
+TAGFILES               = 
+
+# When a file name is specified after GENERATE_TAGFILE, doxygen will create 
+# a tag file that is based on the input files it reads. 
+
+GENERATE_TAGFILE       = 
+
+# If the ALLEXTERNALS tag is set to YES all external classes will be listed 
+# in the class index. If set to NO only the inherited external classes 
+# will be listed. 
+
+ALLEXTERNALS           = NO
+
+# The PERL_PATH should be the absolute path and name of the perl script 
+# interpreter (i.e. the result of `which perl'). 
+
+PERL_PATH              = /usr/bin/perl
+
+#---------------------------------------------------------------------------
+# Configuration options related to the dot tool   
+#---------------------------------------------------------------------------
+
+# If you set the HAVE_DOT tag to YES then doxygen will assume the dot tool is 
+# available from the path. This tool is part of Graphviz, a graph visualization 
+# toolkit from AT&T and Lucent Bell Labs. The other options in this section 
+# have no effect if this option is set to NO (the default) 
+
+HAVE_DOT               = NO
+
+# If the CLASS_GRAPH and HAVE_DOT tags are set to YES then doxygen 
+# will generate a graph for each documented class showing the direct and 
+# indirect inheritance relations. Setting this tag to YES will force the 
+# the CLASS_DIAGRAMS tag to NO.
+
+CLASS_GRAPH            = YES
+
+# If the COLLABORATION_GRAPH and HAVE_DOT tags are set to YES then doxygen 
+# will generate a graph for each documented class showing the direct and 
+# indirect implementation dependencies (inheritance, containment, and 
+# class references variables) of the class with other documented classes. 
+
+COLLABORATION_GRAPH    = YES
+
+# If the ENABLE_PREPROCESSING, INCLUDE_GRAPH, and HAVE_DOT tags are set to 
+# YES then doxygen will generate a graph for each documented file showing 
+# the direct and indirect include dependencies of the file with other 
+# documented files. 
+
+INCLUDE_GRAPH          = YES
+
+# If the ENABLE_PREPROCESSING, INCLUDED_BY_GRAPH, and HAVE_DOT tags are set to 
+# YES then doxygen will generate a graph for each documented header file showing 
+# the documented files that directly or indirectly include this file 
+
+INCLUDED_BY_GRAPH      = YES
+
+# If the GRAPHICAL_HIERARCHY and HAVE_DOT tags are set to YES then doxygen 
+# will graphical hierarchy of all classes instead of a textual one. 
+
+GRAPHICAL_HIERARCHY    = YES
+
+# The tag DOT_PATH can be used to specify the path where the dot tool can be 
+# found. If left blank, it is assumed the dot tool can be found on the path. 
+
+DOT_PATH               = 
+
+# The MAX_DOT_GRAPH_WIDTH tag can be used to set the maximum allowed width 
+# (in pixels) of the graphs generated by dot. If a graph becomes larger than 
+# this value, doxygen will try to truncate the graph, so that it fits within 
+# the specified constraint. Beware that most browsers cannot cope with very 
+# large images. 
+
+MAX_DOT_GRAPH_WIDTH    = 1024
+
+# The MAX_DOT_GRAPH_HEIGHT tag can be used to set the maximum allows height 
+# (in pixels) of the graphs generated by dot. If a graph becomes larger than 
+# this value, doxygen will try to truncate the graph, so that it fits within 
+# the specified constraint. Beware that most browsers cannot cope with very 
+# large images. 
+
+MAX_DOT_GRAPH_HEIGHT   = 1024
+
+# If the GENERATE_LEGEND tag is set to YES (the default) Doxygen will 
+# generate a legend page explaining the meaning of the various boxes and 
+# arrows in the dot generated graphs. 
+
+GENERATE_LEGEND        = YES
+
+#---------------------------------------------------------------------------
+# Configuration::addtions related to the search engine   
+#---------------------------------------------------------------------------
+
+# The SEARCHENGINE tag specifies whether or not a search engine should be 
+# used. If set to NO the values of all tags below this one will be ignored. 
+
+SEARCHENGINE           = NO
+
+# The CGI_NAME tag should be the name of the CGI script that 
+# starts the search engine (doxysearch) with the correct parameters. 
+# A script with this name will be generated by doxygen. 
+
+CGI_NAME               = search.cgi
+
+# The CGI_URL tag should be the absolute URL to the directory where the 
+# cgi binaries are located. See the documentation of your http daemon for 
+# details. 
+
+CGI_URL                = 
+
+# The DOC_URL tag should be the absolute URL to the directory where the 
+# documentation is located. If left blank the absolute path to the 
+# documentation, with file:// prepended to it, will be used. 
+
+DOC_URL                = 
+
+# The DOC_ABSPATH tag should be the absolute path to the directory where the 
+# documentation is located. If left blank the directory on the local machine 
+# will be used. 
+
+DOC_ABSPATH            = 
+
+# The BIN_ABSPATH tag must point to the directory where the doxysearch binary 
+# is installed. 
+
+BIN_ABSPATH            = /usr/local/bin/
+
+# The EXT_DOC_PATHS tag can be used to specify one or more paths to 
+# documentation generated for other projects. This allows doxysearch to search 
+# the documentation for these projects as well. 
+
+EXT_DOC_PATHS          =