c_nifti 0.0.1

Sign up to get free protection for your applications and to get access to all the features.
Files changed (172) hide show
  1. checksums.yaml +7 -0
  2. data/.gitignore +37 -0
  3. data/.rspec +2 -0
  4. data/.ruby-gemset +1 -0
  5. data/.ruby-version +1 -0
  6. data/COPYING +621 -0
  7. data/COPYING.lesser +166 -0
  8. data/Gemfile +4 -0
  9. data/README.md +117 -0
  10. data/Rakefile +6 -0
  11. data/c_nifti.gemspec +31 -0
  12. data/ext/nifticlib/extconf.rb +30 -0
  13. data/ext/nifticlib/include/nifti_image.h +2 -0
  14. data/ext/nifticlib/include/nifti_image_converters.h +3 -0
  15. data/ext/nifticlib/include/nifti_image_dimensions.h +1 -0
  16. data/ext/nifticlib/include/nifti_image_intents.h +1 -0
  17. data/ext/nifticlib/include/nifti_image_metadata.h +1 -0
  18. data/ext/nifticlib/include/nifti_image_quaternions.h +1 -0
  19. data/ext/nifticlib/include/nifti_image_spacings.h +1 -0
  20. data/ext/nifticlib/include/nifti_image_timings.h +1 -0
  21. data/ext/nifticlib/include/nifti_image_transforms.h +1 -0
  22. data/ext/nifticlib/nifti_image.c +169 -0
  23. data/ext/nifticlib/nifti_image_converters.c +65 -0
  24. data/ext/nifticlib/nifti_image_dimensions.c +113 -0
  25. data/ext/nifticlib/nifti_image_intents.c +45 -0
  26. data/ext/nifticlib/nifti_image_metadata.c +133 -0
  27. data/ext/nifticlib/nifti_image_quaternions.c +59 -0
  28. data/ext/nifticlib/nifti_image_spacings.c +87 -0
  29. data/ext/nifticlib/nifti_image_timings.c +66 -0
  30. data/ext/nifticlib/nifti_image_transforms.c +38 -0
  31. data/ext/nifticlib/nifticlib-2.0.0/CMakeLists.txt +140 -0
  32. data/ext/nifticlib/nifticlib-2.0.0/CTestConfig.cmake +13 -0
  33. data/ext/nifticlib/nifticlib-2.0.0/LICENSE +9 -0
  34. data/ext/nifticlib/nifticlib-2.0.0/Makefile +265 -0
  35. data/ext/nifticlib/nifticlib-2.0.0/Makefile.cross_mingw32 +94 -0
  36. data/ext/nifticlib/nifticlib-2.0.0/README +79 -0
  37. data/ext/nifticlib/nifticlib-2.0.0/Testing/CMakeLists.txt +7 -0
  38. data/ext/nifticlib/nifticlib-2.0.0/Testing/Data/ATestReferenceImageForReadingAndWriting.nii.gz +0 -0
  39. data/ext/nifticlib/nifticlib-2.0.0/Testing/Makefile +21 -0
  40. data/ext/nifticlib/nifticlib-2.0.0/Testing/README_regress +50 -0
  41. data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/@show.diffs +33 -0
  42. data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/@test +80 -0
  43. data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/CMakeLists.txt +47 -0
  44. data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/bricks_test.sh +32 -0
  45. data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/comment_test.sh +65 -0
  46. data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/dci_test.sh +46 -0
  47. data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/dsets_test.sh +61 -0
  48. data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/dts_test.sh +75 -0
  49. data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/fetch_data_test.sh +45 -0
  50. data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/mod_header_test.sh +60 -0
  51. data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/newfiles_test.sh +36 -0
  52. data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c01.versions +10 -0
  53. data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c02.nt.help +5 -0
  54. data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c03.hist +5 -0
  55. data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c04.disp.anat0.info +7 -0
  56. data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c05.mod.hdr +9 -0
  57. data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c06.add.ext +22 -0
  58. data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c07.cbl.4bricks +8 -0
  59. data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c08.dts.19.36.11 +4 -0
  60. data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c09.dts4.compare +9 -0
  61. data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c10.dci.ts4 +15 -0
  62. data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c10a.dci.run.210 +16 -0
  63. data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c11.add.comment +8 -0
  64. data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c12.check.comments +7 -0
  65. data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c13.check.hdrs +5 -0
  66. data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c14.make.dsets +21 -0
  67. data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c15.new.files +21 -0
  68. data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c16.rand.swap +35 -0
  69. data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c17.file.case +34 -0
  70. data/ext/nifticlib/nifticlib-2.0.0/Testing/niftilib/CMakeLists.txt +15 -0
  71. data/ext/nifticlib/nifticlib-2.0.0/Testing/niftilib/nifti_test.c +690 -0
  72. data/ext/nifticlib/nifticlib-2.0.0/Testing/niftilib/nifti_test2.c +32 -0
  73. data/ext/nifticlib/nifticlib-2.0.0/Updates.txt +110 -0
  74. data/ext/nifticlib/nifticlib-2.0.0/bin/.gitkeep +0 -0
  75. data/ext/nifticlib/nifticlib-2.0.0/docs/Doxy_nifti.txt +123 -0
  76. data/ext/nifticlib/nifticlib-2.0.0/docs/Doxyfile.ORIG +746 -0
  77. data/ext/nifticlib/nifticlib-2.0.0/examples/CMakeLists.txt +15 -0
  78. data/ext/nifticlib/nifticlib-2.0.0/examples/Makefile +48 -0
  79. data/ext/nifticlib/nifticlib-2.0.0/examples/clib_01_read_write.c +94 -0
  80. data/ext/nifticlib/nifticlib-2.0.0/examples/fsl_api_driver.c +142 -0
  81. data/ext/nifticlib/nifticlib-2.0.0/fsliolib/CMakeLists.txt +32 -0
  82. data/ext/nifticlib/nifticlib-2.0.0/fsliolib/Makefile +29 -0
  83. data/ext/nifticlib/nifticlib-2.0.0/fsliolib/fslio.c +2426 -0
  84. data/ext/nifticlib/nifticlib-2.0.0/fsliolib/fslio.tcl +83 -0
  85. data/ext/nifticlib/nifticlib-2.0.0/fsliolib/imcp +65 -0
  86. data/ext/nifticlib/nifticlib-2.0.0/fsliolib/imglob +59 -0
  87. data/ext/nifticlib/nifticlib-2.0.0/fsliolib/imln +37 -0
  88. data/ext/nifticlib/nifticlib-2.0.0/fsliolib/immv +64 -0
  89. data/ext/nifticlib/nifticlib-2.0.0/fsliolib/imrm +29 -0
  90. data/ext/nifticlib/nifticlib-2.0.0/fsliolib/imtest +53 -0
  91. data/ext/nifticlib/nifticlib-2.0.0/fsliolib/remove_ext +33 -0
  92. data/ext/nifticlib/nifticlib-2.0.0/include/.gitkeep +0 -0
  93. data/ext/nifticlib/nifticlib-2.0.0/nifticdf/CMakeLists.txt +28 -0
  94. data/ext/nifticlib/nifticlib-2.0.0/nifticdf/Makefile +28 -0
  95. data/ext/nifticlib/nifticlib-2.0.0/nifticdf/nifticdf.c +11107 -0
  96. data/ext/nifticlib/nifticlib-2.0.0/niftilib/CMakeLists.txt +33 -0
  97. data/ext/nifticlib/nifticlib-2.0.0/niftilib/Makefile +31 -0
  98. data/ext/nifticlib/nifticlib-2.0.0/niftilib/nifti1_io.c +7509 -0
  99. data/ext/nifticlib/nifticlib-2.0.0/packaging/DevPackage.template +18 -0
  100. data/ext/nifticlib/nifticlib-2.0.0/packaging/nifticlib.spec +62 -0
  101. data/ext/nifticlib/nifticlib-2.0.0/real_easy/nifti1_read_write.c +361 -0
  102. data/ext/nifticlib/nifticlib-2.0.0/utils/CMakeLists.txt +73 -0
  103. data/ext/nifticlib/nifticlib-2.0.0/utils/Makefile +55 -0
  104. data/ext/nifticlib/nifticlib-2.0.0/utils/nifti1_test.c +95 -0
  105. data/ext/nifticlib/nifticlib-2.0.0/utils/nifti_stats.c +95 -0
  106. data/ext/nifticlib/nifticlib-2.0.0/utils/nifti_tool.c +4193 -0
  107. data/ext/nifticlib/nifticlib-2.0.0/utils/nifti_tool.h +163 -0
  108. data/ext/nifticlib/nifticlib-2.0.0/znzlib/CMakeLists.txt +31 -0
  109. data/ext/nifticlib/nifticlib-2.0.0/znzlib/Makefile +33 -0
  110. data/ext/nifticlib/nifticlib-2.0.0/znzlib/znzlib.c +322 -0
  111. data/ext/nifticlib/nifticlib.c +107 -0
  112. data/ext/nifticlib/patches/nifticlib_fpic.patch +13 -0
  113. data/features/read_modify_write.feature +11 -0
  114. data/features/step_definitions/nifti_image_steps.rb +16 -0
  115. data/features/support/env.rb +14 -0
  116. data/features/support/fixtures/sample.nii.gz +0 -0
  117. data/lib/c_nifti.rb +9 -0
  118. data/lib/c_nifti/data.rb +70 -0
  119. data/lib/c_nifti/header.rb +16 -0
  120. data/lib/c_nifti/header_element.rb +13 -0
  121. data/lib/c_nifti/header_element/datatype.rb +49 -0
  122. data/lib/c_nifti/header_element/datatype/base.rb +9 -0
  123. data/lib/c_nifti/header_element/datatype/binary.rb +11 -0
  124. data/lib/c_nifti/header_element/datatype/double.rb +11 -0
  125. data/lib/c_nifti/header_element/datatype/float.rb +11 -0
  126. data/lib/c_nifti/header_element/datatype/long_double.rb +11 -0
  127. data/lib/c_nifti/header_element/datatype/long_long.rb +11 -0
  128. data/lib/c_nifti/header_element/datatype/signed_char.rb +11 -0
  129. data/lib/c_nifti/header_element/datatype/signed_int.rb +11 -0
  130. data/lib/c_nifti/header_element/datatype/signed_short.rb +11 -0
  131. data/lib/c_nifti/header_element/datatype/unsigned_char.rb +11 -0
  132. data/lib/c_nifti/header_element/datatype/unsigned_int.rb +11 -0
  133. data/lib/c_nifti/header_element/datatype/unsigned_long_long.rb +11 -0
  134. data/lib/c_nifti/header_element/datatype/unsigned_short.rb +11 -0
  135. data/lib/c_nifti/header_element/dimensions.rb +53 -0
  136. data/lib/c_nifti/header_element/intents.rb +25 -0
  137. data/lib/c_nifti/header_element/metadata.rb +49 -0
  138. data/lib/c_nifti/header_element/miscellaneous.rb +25 -0
  139. data/lib/c_nifti/header_element/quaternions.rb +33 -0
  140. data/lib/c_nifti/header_element/spacings.rb +45 -0
  141. data/lib/c_nifti/header_element/timings.rb +37 -0
  142. data/lib/c_nifti/header_element/transforms.rb +21 -0
  143. data/lib/c_nifti/image.rb +31 -0
  144. data/lib/c_nifti/version.rb +3 -0
  145. data/lib/nifticlib.rb +1 -0
  146. data/spec/data_spec.rb +112 -0
  147. data/spec/factories/nifti_images.rb +9 -0
  148. data/spec/header_element/datatype/base_spec.rb +9 -0
  149. data/spec/header_element/datatype/binary_spec.rb +9 -0
  150. data/spec/header_element/datatype/double_spec.rb +9 -0
  151. data/spec/header_element/datatype/float_spec.rb +9 -0
  152. data/spec/header_element/datatype/long_double_spec.rb +9 -0
  153. data/spec/header_element/datatype/long_long_spec.rb +9 -0
  154. data/spec/header_element/datatype/signed_char_spec.rb +9 -0
  155. data/spec/header_element/datatype/signed_int_spec.rb +9 -0
  156. data/spec/header_element/datatype/signed_short_spec.rb +9 -0
  157. data/spec/header_element/datatype/unsigned_char_spec.rb +9 -0
  158. data/spec/header_element/datatype/unsigned_int_spec.rb +9 -0
  159. data/spec/header_element/datatype/unsigned_long_long.rb +9 -0
  160. data/spec/header_element/datatype/unsigned_short_spec.rb +9 -0
  161. data/spec/header_element/datatype_spec.rb +109 -0
  162. data/spec/header_element/dimensions_spec.rb +105 -0
  163. data/spec/header_element/intents_spec.rb +48 -0
  164. data/spec/header_element/metadata_spec.rb +96 -0
  165. data/spec/header_element/miscellaneous_spec.rb +48 -0
  166. data/spec/header_element/quaternions_spec.rb +64 -0
  167. data/spec/header_element/spacings_spec.rb +88 -0
  168. data/spec/header_element/timings_spec.rb +72 -0
  169. data/spec/header_element/transforms_spec.rb +64 -0
  170. data/spec/image_spec.rb +39 -0
  171. data/spec/spec_helper.rb +85 -0
  172. metadata +363 -0

There are too many changes on this page to be displayed.

The amount of changes on this page would crash your brower.

You can still verify the content by downloading the gem file manually.