c_nifti 0.0.1
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- checksums.yaml +7 -0
- data/.gitignore +37 -0
- data/.rspec +2 -0
- data/.ruby-gemset +1 -0
- data/.ruby-version +1 -0
- data/COPYING +621 -0
- data/COPYING.lesser +166 -0
- data/Gemfile +4 -0
- data/README.md +117 -0
- data/Rakefile +6 -0
- data/c_nifti.gemspec +31 -0
- data/ext/nifticlib/extconf.rb +30 -0
- data/ext/nifticlib/include/nifti_image.h +2 -0
- data/ext/nifticlib/include/nifti_image_converters.h +3 -0
- data/ext/nifticlib/include/nifti_image_dimensions.h +1 -0
- data/ext/nifticlib/include/nifti_image_intents.h +1 -0
- data/ext/nifticlib/include/nifti_image_metadata.h +1 -0
- data/ext/nifticlib/include/nifti_image_quaternions.h +1 -0
- data/ext/nifticlib/include/nifti_image_spacings.h +1 -0
- data/ext/nifticlib/include/nifti_image_timings.h +1 -0
- data/ext/nifticlib/include/nifti_image_transforms.h +1 -0
- data/ext/nifticlib/nifti_image.c +169 -0
- data/ext/nifticlib/nifti_image_converters.c +65 -0
- data/ext/nifticlib/nifti_image_dimensions.c +113 -0
- data/ext/nifticlib/nifti_image_intents.c +45 -0
- data/ext/nifticlib/nifti_image_metadata.c +133 -0
- data/ext/nifticlib/nifti_image_quaternions.c +59 -0
- data/ext/nifticlib/nifti_image_spacings.c +87 -0
- data/ext/nifticlib/nifti_image_timings.c +66 -0
- data/ext/nifticlib/nifti_image_transforms.c +38 -0
- data/ext/nifticlib/nifticlib-2.0.0/CMakeLists.txt +140 -0
- data/ext/nifticlib/nifticlib-2.0.0/CTestConfig.cmake +13 -0
- data/ext/nifticlib/nifticlib-2.0.0/LICENSE +9 -0
- data/ext/nifticlib/nifticlib-2.0.0/Makefile +265 -0
- data/ext/nifticlib/nifticlib-2.0.0/Makefile.cross_mingw32 +94 -0
- data/ext/nifticlib/nifticlib-2.0.0/README +79 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/CMakeLists.txt +7 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/Data/ATestReferenceImageForReadingAndWriting.nii.gz +0 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/Makefile +21 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/README_regress +50 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/@show.diffs +33 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/@test +80 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/CMakeLists.txt +47 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/bricks_test.sh +32 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/comment_test.sh +65 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/dci_test.sh +46 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/dsets_test.sh +61 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/dts_test.sh +75 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/fetch_data_test.sh +45 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/mod_header_test.sh +60 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/newfiles_test.sh +36 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c01.versions +10 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c02.nt.help +5 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c03.hist +5 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c04.disp.anat0.info +7 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c05.mod.hdr +9 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c06.add.ext +22 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c07.cbl.4bricks +8 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c08.dts.19.36.11 +4 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c09.dts4.compare +9 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c10.dci.ts4 +15 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c10a.dci.run.210 +16 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c11.add.comment +8 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c12.check.comments +7 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c13.check.hdrs +5 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c14.make.dsets +21 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c15.new.files +21 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c16.rand.swap +35 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c17.file.case +34 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/niftilib/CMakeLists.txt +15 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/niftilib/nifti_test.c +690 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/niftilib/nifti_test2.c +32 -0
- data/ext/nifticlib/nifticlib-2.0.0/Updates.txt +110 -0
- data/ext/nifticlib/nifticlib-2.0.0/bin/.gitkeep +0 -0
- data/ext/nifticlib/nifticlib-2.0.0/docs/Doxy_nifti.txt +123 -0
- data/ext/nifticlib/nifticlib-2.0.0/docs/Doxyfile.ORIG +746 -0
- data/ext/nifticlib/nifticlib-2.0.0/examples/CMakeLists.txt +15 -0
- data/ext/nifticlib/nifticlib-2.0.0/examples/Makefile +48 -0
- data/ext/nifticlib/nifticlib-2.0.0/examples/clib_01_read_write.c +94 -0
- data/ext/nifticlib/nifticlib-2.0.0/examples/fsl_api_driver.c +142 -0
- data/ext/nifticlib/nifticlib-2.0.0/fsliolib/CMakeLists.txt +32 -0
- data/ext/nifticlib/nifticlib-2.0.0/fsliolib/Makefile +29 -0
- data/ext/nifticlib/nifticlib-2.0.0/fsliolib/fslio.c +2426 -0
- data/ext/nifticlib/nifticlib-2.0.0/fsliolib/fslio.tcl +83 -0
- data/ext/nifticlib/nifticlib-2.0.0/fsliolib/imcp +65 -0
- data/ext/nifticlib/nifticlib-2.0.0/fsliolib/imglob +59 -0
- data/ext/nifticlib/nifticlib-2.0.0/fsliolib/imln +37 -0
- data/ext/nifticlib/nifticlib-2.0.0/fsliolib/immv +64 -0
- data/ext/nifticlib/nifticlib-2.0.0/fsliolib/imrm +29 -0
- data/ext/nifticlib/nifticlib-2.0.0/fsliolib/imtest +53 -0
- data/ext/nifticlib/nifticlib-2.0.0/fsliolib/remove_ext +33 -0
- data/ext/nifticlib/nifticlib-2.0.0/include/.gitkeep +0 -0
- data/ext/nifticlib/nifticlib-2.0.0/nifticdf/CMakeLists.txt +28 -0
- data/ext/nifticlib/nifticlib-2.0.0/nifticdf/Makefile +28 -0
- data/ext/nifticlib/nifticlib-2.0.0/nifticdf/nifticdf.c +11107 -0
- data/ext/nifticlib/nifticlib-2.0.0/niftilib/CMakeLists.txt +33 -0
- data/ext/nifticlib/nifticlib-2.0.0/niftilib/Makefile +31 -0
- data/ext/nifticlib/nifticlib-2.0.0/niftilib/nifti1_io.c +7509 -0
- data/ext/nifticlib/nifticlib-2.0.0/packaging/DevPackage.template +18 -0
- data/ext/nifticlib/nifticlib-2.0.0/packaging/nifticlib.spec +62 -0
- data/ext/nifticlib/nifticlib-2.0.0/real_easy/nifti1_read_write.c +361 -0
- data/ext/nifticlib/nifticlib-2.0.0/utils/CMakeLists.txt +73 -0
- data/ext/nifticlib/nifticlib-2.0.0/utils/Makefile +55 -0
- data/ext/nifticlib/nifticlib-2.0.0/utils/nifti1_test.c +95 -0
- data/ext/nifticlib/nifticlib-2.0.0/utils/nifti_stats.c +95 -0
- data/ext/nifticlib/nifticlib-2.0.0/utils/nifti_tool.c +4193 -0
- data/ext/nifticlib/nifticlib-2.0.0/utils/nifti_tool.h +163 -0
- data/ext/nifticlib/nifticlib-2.0.0/znzlib/CMakeLists.txt +31 -0
- data/ext/nifticlib/nifticlib-2.0.0/znzlib/Makefile +33 -0
- data/ext/nifticlib/nifticlib-2.0.0/znzlib/znzlib.c +322 -0
- data/ext/nifticlib/nifticlib.c +107 -0
- data/ext/nifticlib/patches/nifticlib_fpic.patch +13 -0
- data/features/read_modify_write.feature +11 -0
- data/features/step_definitions/nifti_image_steps.rb +16 -0
- data/features/support/env.rb +14 -0
- data/features/support/fixtures/sample.nii.gz +0 -0
- data/lib/c_nifti.rb +9 -0
- data/lib/c_nifti/data.rb +70 -0
- data/lib/c_nifti/header.rb +16 -0
- data/lib/c_nifti/header_element.rb +13 -0
- data/lib/c_nifti/header_element/datatype.rb +49 -0
- data/lib/c_nifti/header_element/datatype/base.rb +9 -0
- data/lib/c_nifti/header_element/datatype/binary.rb +11 -0
- data/lib/c_nifti/header_element/datatype/double.rb +11 -0
- data/lib/c_nifti/header_element/datatype/float.rb +11 -0
- data/lib/c_nifti/header_element/datatype/long_double.rb +11 -0
- data/lib/c_nifti/header_element/datatype/long_long.rb +11 -0
- data/lib/c_nifti/header_element/datatype/signed_char.rb +11 -0
- data/lib/c_nifti/header_element/datatype/signed_int.rb +11 -0
- data/lib/c_nifti/header_element/datatype/signed_short.rb +11 -0
- data/lib/c_nifti/header_element/datatype/unsigned_char.rb +11 -0
- data/lib/c_nifti/header_element/datatype/unsigned_int.rb +11 -0
- data/lib/c_nifti/header_element/datatype/unsigned_long_long.rb +11 -0
- data/lib/c_nifti/header_element/datatype/unsigned_short.rb +11 -0
- data/lib/c_nifti/header_element/dimensions.rb +53 -0
- data/lib/c_nifti/header_element/intents.rb +25 -0
- data/lib/c_nifti/header_element/metadata.rb +49 -0
- data/lib/c_nifti/header_element/miscellaneous.rb +25 -0
- data/lib/c_nifti/header_element/quaternions.rb +33 -0
- data/lib/c_nifti/header_element/spacings.rb +45 -0
- data/lib/c_nifti/header_element/timings.rb +37 -0
- data/lib/c_nifti/header_element/transforms.rb +21 -0
- data/lib/c_nifti/image.rb +31 -0
- data/lib/c_nifti/version.rb +3 -0
- data/lib/nifticlib.rb +1 -0
- data/spec/data_spec.rb +112 -0
- data/spec/factories/nifti_images.rb +9 -0
- data/spec/header_element/datatype/base_spec.rb +9 -0
- data/spec/header_element/datatype/binary_spec.rb +9 -0
- data/spec/header_element/datatype/double_spec.rb +9 -0
- data/spec/header_element/datatype/float_spec.rb +9 -0
- data/spec/header_element/datatype/long_double_spec.rb +9 -0
- data/spec/header_element/datatype/long_long_spec.rb +9 -0
- data/spec/header_element/datatype/signed_char_spec.rb +9 -0
- data/spec/header_element/datatype/signed_int_spec.rb +9 -0
- data/spec/header_element/datatype/signed_short_spec.rb +9 -0
- data/spec/header_element/datatype/unsigned_char_spec.rb +9 -0
- data/spec/header_element/datatype/unsigned_int_spec.rb +9 -0
- data/spec/header_element/datatype/unsigned_long_long.rb +9 -0
- data/spec/header_element/datatype/unsigned_short_spec.rb +9 -0
- data/spec/header_element/datatype_spec.rb +109 -0
- data/spec/header_element/dimensions_spec.rb +105 -0
- data/spec/header_element/intents_spec.rb +48 -0
- data/spec/header_element/metadata_spec.rb +96 -0
- data/spec/header_element/miscellaneous_spec.rb +48 -0
- data/spec/header_element/quaternions_spec.rb +64 -0
- data/spec/header_element/spacings_spec.rb +88 -0
- data/spec/header_element/timings_spec.rb +72 -0
- data/spec/header_element/transforms_spec.rb +64 -0
- data/spec/image_spec.rb +39 -0
- data/spec/spec_helper.rb +85 -0
- metadata +363 -0
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#include <ruby.h> // Ruby C extensions
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#include <nifti1_io.h> // standard NIfTI C library
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#include <stdbool.h> // Boolean type handling
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#include <nifti_image_converters.h>
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nifti_image * to_nifti_image(VALUE rb_nifti_image){
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nifti_image *img = NULL;
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Data_Get_Struct(rb_nifti_image, nifti_image, img);
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return img;
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}
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VALUE voxel_data_to_value(nifti_image *img, int index){
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// Types nifti1.h
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switch(img->datatype){
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case DT_BINARY: // DT_UINT8
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if (((bool *) img->data)[index]){
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return Qtrue;
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}else{
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return Qfalse;
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}
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case DT_UNSIGNED_CHAR:
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return rb_sprintf("%u", ((unsigned char *) img->data)[index]);
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case DT_SIGNED_SHORT: // DT_INT16
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return INT2NUM((int) ((short *) img->data)[index]);
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case DT_SIGNED_INT: // DT_INT32
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return INT2NUM(((int *) img->data)[index]);
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case DT_FLOAT: // DT_FLOAT32
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return rb_float_new((double) ((float *) img->data)[index]);
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case DT_DOUBLE: // DT_FLOAT64
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return rb_float_new(((double *) img->data)[index]);
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case DT_INT8:
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return rb_sprintf("%c", ((char *) img->data)[index]);
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case DT_UINT16:
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return INT2NUM((int) ((unsigned short *) img->data)[index]);
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case DT_UINT32:
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return INT2NUM((int) ((unsigned int *) img->data)[index]);
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case DT_INT64:
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return INT2NUM((int) ((long long *) img->data)[index]);
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case DT_UINT64:
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return INT2NUM((int) ((unsigned long long *) img->data)[index]);
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case DT_FLOAT128:
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return rb_float_new(((double) ((long double *) img->data)[index]));
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default: // Unsupported types: DT_COMPLEX, DT_RGB, DT_ALL, DT_COMPLEX128, DT_COMPLEX256, DT_RGBA32
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return Qnil;
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}
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}
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VALUE mat44_to_rb_array(mat44 matrix){
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VALUE rb_data = rb_ary_new2(4);
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int x, y;
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for(x = 0; x < 4; x++){
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VALUE line = rb_ary_new2(4);
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for(y = 0; y < 4; y++){
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rb_ary_store(line, y, rb_float_new((double) matrix.m[x][y]));
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}
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rb_ary_store(rb_data, x, line);
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}
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return rb_data;
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}
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#include <ruby.h> // Ruby C extensions
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#include <nifti1_io.h> // standard NIfTI C library
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#include <nifti_image_converters.h>
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#include <nifti_image_dimensions.h>
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VALUE nifti_image_ndim(VALUE self){
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nifti_image *img = to_nifti_image(self);
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return INT2NUM(img->ndim);
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}
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VALUE nifti_image_nvox(VALUE self){
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return INT2NUM(to_nifti_image(self)->nvox);
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}
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VALUE nifti_image_nx(VALUE self){
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nifti_image *img = to_nifti_image(self);
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return INT2NUM(img->nx);
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}
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VALUE nifti_image_ny(VALUE self){
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nifti_image *img = to_nifti_image(self);
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return INT2NUM(img->ny);
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}
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VALUE nifti_image_nz(VALUE self){
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nifti_image *img = to_nifti_image(self);
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return INT2NUM(img->nz);
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}
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VALUE nifti_image_nt(VALUE self){
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nifti_image *img = to_nifti_image(self);
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return INT2NUM(img->nt);
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}
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VALUE nifti_image_nu(VALUE self){
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nifti_image *img = to_nifti_image(self);
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return INT2NUM(img->nu);
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}
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VALUE nifti_image_nv(VALUE self){
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nifti_image *img = to_nifti_image(self);
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return INT2NUM(img->nv);
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}
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VALUE nifti_image_nw(VALUE self){
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nifti_image *img = to_nifti_image(self);
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return INT2NUM(img->nw);
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}
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VALUE nifti_image_dim(VALUE self){
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int i = 0;
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nifti_image *img = to_nifti_image(self);
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VALUE rb_data = rb_ary_new2(img->nvox);
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for(i = 0; i < 8; i++){
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|
+
rb_ary_store(rb_data, i, INT2NUM(img->dim[i]));
|
67
|
+
}
|
68
|
+
|
69
|
+
return rb_data;
|
70
|
+
}
|
71
|
+
|
72
|
+
VALUE nifti_image_nbyper(VALUE self){
|
73
|
+
nifti_image *img = to_nifti_image(self);
|
74
|
+
|
75
|
+
return INT2NUM(img->nbyper);
|
76
|
+
}
|
77
|
+
|
78
|
+
VALUE nifti_image_datatype(VALUE self){
|
79
|
+
nifti_image *img = to_nifti_image(self);
|
80
|
+
|
81
|
+
return INT2NUM(img->datatype);
|
82
|
+
}
|
83
|
+
|
84
|
+
VALUE nifti_image_xyz_units(VALUE self){
|
85
|
+
nifti_image *img = to_nifti_image(self);
|
86
|
+
|
87
|
+
return INT2NUM(img->xyz_units);
|
88
|
+
}
|
89
|
+
|
90
|
+
VALUE nifti_image_time_units(VALUE self){
|
91
|
+
nifti_image *img = to_nifti_image(self);
|
92
|
+
|
93
|
+
return INT2NUM(img->time_units);
|
94
|
+
}
|
95
|
+
|
96
|
+
VALUE nifti_image_dimensions_init(VALUE klass){
|
97
|
+
rb_define_method(klass, "ndim", nifti_image_ndim, 0);
|
98
|
+
rb_define_method(klass, "nx", nifti_image_nx, 0);
|
99
|
+
rb_define_method(klass, "ny", nifti_image_ny, 0);
|
100
|
+
rb_define_method(klass, "nz", nifti_image_nz, 0);
|
101
|
+
rb_define_method(klass, "nt", nifti_image_nt, 0);
|
102
|
+
rb_define_method(klass, "nu", nifti_image_nu, 0);
|
103
|
+
rb_define_method(klass, "nv", nifti_image_nv, 0);
|
104
|
+
rb_define_method(klass, "nw", nifti_image_nw, 0);
|
105
|
+
rb_define_method(klass, "dim", nifti_image_dim, 0);
|
106
|
+
rb_define_method(klass, "nvox", nifti_image_nvox, 0);
|
107
|
+
rb_define_method(klass, "nbyper", nifti_image_nbyper, 0);
|
108
|
+
rb_define_method(klass, "datatype", nifti_image_datatype, 0);
|
109
|
+
rb_define_method(klass, "xyz_units", nifti_image_xyz_units, 0);
|
110
|
+
rb_define_method(klass, "time_units", nifti_image_time_units, 0);
|
111
|
+
|
112
|
+
return klass;
|
113
|
+
}
|
@@ -0,0 +1,45 @@
|
|
1
|
+
#include <ruby.h> // Ruby C extensions
|
2
|
+
#include <nifti1_io.h> // standard NIfTI C library
|
3
|
+
|
4
|
+
#include <nifti_image_converters.h>
|
5
|
+
#include <nifti_image_intents.h>
|
6
|
+
|
7
|
+
VALUE nifti_image_intent_code(VALUE self){
|
8
|
+
nifti_image *img = to_nifti_image(self);
|
9
|
+
|
10
|
+
return INT2NUM(img->intent_code);
|
11
|
+
}
|
12
|
+
|
13
|
+
VALUE nifti_image_intent_p1(VALUE self){
|
14
|
+
nifti_image *img = to_nifti_image(self);
|
15
|
+
|
16
|
+
return rb_float_new((double) img->intent_p1);
|
17
|
+
}
|
18
|
+
|
19
|
+
VALUE nifti_image_intent_p2(VALUE self){
|
20
|
+
nifti_image *img = to_nifti_image(self);
|
21
|
+
|
22
|
+
return rb_float_new((double) img->intent_p2);
|
23
|
+
}
|
24
|
+
|
25
|
+
VALUE nifti_image_intent_p3(VALUE self){
|
26
|
+
nifti_image *img = to_nifti_image(self);
|
27
|
+
|
28
|
+
return rb_float_new((double) img->intent_p3);
|
29
|
+
}
|
30
|
+
|
31
|
+
VALUE nifti_image_intent_name(VALUE self){
|
32
|
+
nifti_image *img = to_nifti_image(self);
|
33
|
+
|
34
|
+
return rb_str_new2(img->intent_name);
|
35
|
+
}
|
36
|
+
|
37
|
+
VALUE nifti_image_intents_init(VALUE klass){
|
38
|
+
rb_define_method(klass, "intent_code", nifti_image_intent_code, 0);
|
39
|
+
rb_define_method(klass, "intent_p1", nifti_image_intent_p1, 0);
|
40
|
+
rb_define_method(klass, "intent_p2", nifti_image_intent_p2, 0);
|
41
|
+
rb_define_method(klass, "intent_p3", nifti_image_intent_p3, 0);
|
42
|
+
rb_define_method(klass, "intent_name", nifti_image_intent_name, 0);
|
43
|
+
|
44
|
+
return klass;
|
45
|
+
}
|
@@ -0,0 +1,133 @@
|
|
1
|
+
#include <ruby.h> // Ruby C extensions
|
2
|
+
#include <nifti1_io.h> // standard NIfTI C library
|
3
|
+
|
4
|
+
#include <nifti_image_converters.h>
|
5
|
+
#include <nifti_image_intents.h>
|
6
|
+
|
7
|
+
#define MAX(a,b) (((a)>(b))?(a):(b))
|
8
|
+
|
9
|
+
/***********/
|
10
|
+
/* Getters */
|
11
|
+
/***********/
|
12
|
+
|
13
|
+
VALUE nifti_image_descrip(VALUE self){
|
14
|
+
nifti_image *img = to_nifti_image(self);
|
15
|
+
|
16
|
+
return rb_str_new2(img->descrip);
|
17
|
+
}
|
18
|
+
|
19
|
+
VALUE nifti_image_aux_file(VALUE self){
|
20
|
+
nifti_image *img = to_nifti_image(self);
|
21
|
+
|
22
|
+
return rb_str_new2(img->aux_file);
|
23
|
+
}
|
24
|
+
|
25
|
+
VALUE nifti_image_fname(VALUE self){
|
26
|
+
nifti_image *img = to_nifti_image(self);
|
27
|
+
|
28
|
+
if(img->fname){
|
29
|
+
return rb_str_new2(img->fname);
|
30
|
+
}else{
|
31
|
+
return Qnil;
|
32
|
+
}
|
33
|
+
}
|
34
|
+
|
35
|
+
VALUE nifti_image_iname(VALUE self){
|
36
|
+
nifti_image *img = to_nifti_image(self);
|
37
|
+
|
38
|
+
return rb_str_new2(img->iname);
|
39
|
+
}
|
40
|
+
|
41
|
+
VALUE nifti_image_iname_offset(VALUE self){
|
42
|
+
nifti_image *img = to_nifti_image(self);
|
43
|
+
|
44
|
+
return INT2NUM(img->iname_offset);
|
45
|
+
}
|
46
|
+
|
47
|
+
VALUE nifti_image_swapsize(VALUE self){
|
48
|
+
nifti_image *img = to_nifti_image(self);
|
49
|
+
|
50
|
+
return INT2NUM(img->swapsize);
|
51
|
+
}
|
52
|
+
|
53
|
+
VALUE nifti_image_byteorder(VALUE self){
|
54
|
+
nifti_image *img = to_nifti_image(self);
|
55
|
+
|
56
|
+
return INT2NUM(img->byteorder);
|
57
|
+
}
|
58
|
+
|
59
|
+
VALUE nifti_image_analyze75_orient(VALUE self){
|
60
|
+
nifti_image *img = to_nifti_image(self);
|
61
|
+
|
62
|
+
return INT2NUM((int) img->analyze75_orient);
|
63
|
+
}
|
64
|
+
|
65
|
+
/***********/
|
66
|
+
/* Setters */
|
67
|
+
/***********/
|
68
|
+
|
69
|
+
VALUE nifti_image_set_descrip(VALUE self, VALUE r_value){
|
70
|
+
nifti_image *img = to_nifti_image(self);
|
71
|
+
char *value;
|
72
|
+
int i = 0;
|
73
|
+
|
74
|
+
StringValue(r_value);
|
75
|
+
value = StringValuePtr(r_value);
|
76
|
+
|
77
|
+
for(i = 0; i < MAX(80, RSTRING_LEN(r_value)); i++){
|
78
|
+
img->descrip[i] = value[i];
|
79
|
+
}
|
80
|
+
|
81
|
+
return nifti_image_descrip(self);
|
82
|
+
}
|
83
|
+
|
84
|
+
VALUE nifti_image_set_aux_file(VALUE self, VALUE r_value){
|
85
|
+
nifti_image *img = to_nifti_image(self);
|
86
|
+
char *value;
|
87
|
+
int i = 0;
|
88
|
+
|
89
|
+
StringValue(r_value);
|
90
|
+
value = StringValuePtr(r_value);
|
91
|
+
|
92
|
+
for(i = 0; i < MAX(24, RSTRING_LEN(r_value)); i++){
|
93
|
+
img->aux_file[i] = value[i];
|
94
|
+
}
|
95
|
+
|
96
|
+
return nifti_image_aux_file(self);
|
97
|
+
}
|
98
|
+
|
99
|
+
VALUE nifti_image_set_filenames(VALUE self, VALUE r_value){
|
100
|
+
nifti_image *img = to_nifti_image(self);
|
101
|
+
char *value;
|
102
|
+
|
103
|
+
StringValue(r_value);
|
104
|
+
value = StringValuePtr(r_value);
|
105
|
+
|
106
|
+
nifti_set_filenames(img, value, 1, 1);
|
107
|
+
|
108
|
+
return r_value;
|
109
|
+
}
|
110
|
+
|
111
|
+
/********/
|
112
|
+
/* Init */
|
113
|
+
/********/
|
114
|
+
|
115
|
+
VALUE nifti_image_metadata_init(VALUE klass){
|
116
|
+
// Getters
|
117
|
+
rb_define_method(klass, "descrip", nifti_image_descrip, 0);
|
118
|
+
rb_define_method(klass, "aux_file", nifti_image_aux_file, 0);
|
119
|
+
rb_define_method(klass, "fname", nifti_image_fname, 0);
|
120
|
+
rb_define_method(klass, "iname", nifti_image_iname, 0);
|
121
|
+
rb_define_method(klass, "iname_offset", nifti_image_iname_offset, 0);
|
122
|
+
rb_define_method(klass, "swapsize", nifti_image_swapsize, 0);
|
123
|
+
rb_define_method(klass, "byteorder", nifti_image_byteorder, 0);
|
124
|
+
rb_define_method(klass, "analyze75_orient", nifti_image_analyze75_orient, 0);
|
125
|
+
|
126
|
+
// Setters
|
127
|
+
// byteorder and swapsize cannot be setted
|
128
|
+
rb_define_method(klass, "descrip=", nifti_image_set_descrip, 1);
|
129
|
+
rb_define_method(klass, "aux_file=", nifti_image_set_aux_file, 1);
|
130
|
+
rb_define_method(klass, "filenames=", nifti_image_set_filenames, 1);
|
131
|
+
|
132
|
+
return klass;
|
133
|
+
}
|
@@ -0,0 +1,59 @@
|
|
1
|
+
#include <ruby.h> // Ruby C extensions
|
2
|
+
#include <nifti1_io.h> // standard NIfTI C library
|
3
|
+
|
4
|
+
#include <nifti_image_converters.h>
|
5
|
+
#include <nifti_image_quaternions.h>
|
6
|
+
|
7
|
+
VALUE nifti_image_quatern_b(VALUE self){
|
8
|
+
nifti_image *img = to_nifti_image(self);
|
9
|
+
|
10
|
+
return rb_float_new((double) img->quatern_b);
|
11
|
+
}
|
12
|
+
|
13
|
+
VALUE nifti_image_quatern_c(VALUE self){
|
14
|
+
nifti_image *img = to_nifti_image(self);
|
15
|
+
|
16
|
+
return rb_float_new((double) img->quatern_c);
|
17
|
+
}
|
18
|
+
|
19
|
+
VALUE nifti_image_quatern_d(VALUE self){
|
20
|
+
nifti_image *img = to_nifti_image(self);
|
21
|
+
|
22
|
+
return rb_float_new((double) img->quatern_d);
|
23
|
+
}
|
24
|
+
|
25
|
+
VALUE nifti_image_qoffset_x(VALUE self){
|
26
|
+
nifti_image *img = to_nifti_image(self);
|
27
|
+
|
28
|
+
return rb_float_new((double) img->qoffset_x);
|
29
|
+
}
|
30
|
+
|
31
|
+
VALUE nifti_image_qoffset_y(VALUE self){
|
32
|
+
nifti_image *img = to_nifti_image(self);
|
33
|
+
|
34
|
+
return rb_float_new((double) img->qoffset_y);
|
35
|
+
}
|
36
|
+
|
37
|
+
VALUE nifti_image_qoffset_z(VALUE self){
|
38
|
+
nifti_image *img = to_nifti_image(self);
|
39
|
+
|
40
|
+
return rb_float_new((double) img->qoffset_z);
|
41
|
+
}
|
42
|
+
|
43
|
+
VALUE nifti_image_qfac(VALUE self){
|
44
|
+
nifti_image *img = to_nifti_image(self);
|
45
|
+
|
46
|
+
return rb_float_new((double) img->qfac);
|
47
|
+
}
|
48
|
+
|
49
|
+
VALUE nifti_image_quaternions_init(VALUE klass){
|
50
|
+
rb_define_method(klass, "quatern_b", nifti_image_quatern_b, 0);
|
51
|
+
rb_define_method(klass, "quatern_c", nifti_image_quatern_c, 0);
|
52
|
+
rb_define_method(klass, "quatern_d", nifti_image_quatern_d, 0);
|
53
|
+
rb_define_method(klass, "qoffset_x", nifti_image_qoffset_x, 0);
|
54
|
+
rb_define_method(klass, "qoffset_y", nifti_image_qoffset_y, 0);
|
55
|
+
rb_define_method(klass, "qoffset_z", nifti_image_qoffset_z, 0);
|
56
|
+
rb_define_method(klass, "qfac", nifti_image_qfac, 0);
|
57
|
+
|
58
|
+
return klass;
|
59
|
+
}
|
@@ -0,0 +1,87 @@
|
|
1
|
+
#include <ruby.h> // Ruby C extensions
|
2
|
+
#include <nifti1_io.h> // standard NIfTI C library
|
3
|
+
|
4
|
+
#include <nifti_image_converters.h>
|
5
|
+
#include <nifti_image_spacings.h>
|
6
|
+
|
7
|
+
VALUE nifti_image_dx(VALUE self){
|
8
|
+
nifti_image *img = to_nifti_image(self);
|
9
|
+
|
10
|
+
return rb_float_new((double) img->dx);
|
11
|
+
}
|
12
|
+
|
13
|
+
VALUE nifti_image_dy(VALUE self){
|
14
|
+
nifti_image *img = to_nifti_image(self);
|
15
|
+
|
16
|
+
return rb_float_new((double) img->dy);
|
17
|
+
}
|
18
|
+
|
19
|
+
VALUE nifti_image_dz(VALUE self){
|
20
|
+
nifti_image *img = to_nifti_image(self);
|
21
|
+
|
22
|
+
return rb_float_new((double) img->dz);
|
23
|
+
}
|
24
|
+
|
25
|
+
VALUE nifti_image_dt(VALUE self){
|
26
|
+
nifti_image *img = to_nifti_image(self);
|
27
|
+
|
28
|
+
return rb_float_new((double) img->dt);
|
29
|
+
}
|
30
|
+
|
31
|
+
VALUE nifti_image_du(VALUE self){
|
32
|
+
nifti_image *img = to_nifti_image(self);
|
33
|
+
|
34
|
+
return rb_float_new((double) img->du);
|
35
|
+
}
|
36
|
+
|
37
|
+
VALUE nifti_image_dv(VALUE self){
|
38
|
+
nifti_image *img = to_nifti_image(self);
|
39
|
+
|
40
|
+
return rb_float_new((double) img->dv);
|
41
|
+
}
|
42
|
+
|
43
|
+
VALUE nifti_image_dw(VALUE self){
|
44
|
+
nifti_image *img = to_nifti_image(self);
|
45
|
+
|
46
|
+
return rb_float_new((double) img->dw);
|
47
|
+
}
|
48
|
+
|
49
|
+
VALUE nifti_image_pixdim(VALUE self){
|
50
|
+
int i = 0;
|
51
|
+
nifti_image *img = to_nifti_image(self);
|
52
|
+
|
53
|
+
VALUE rb_data = rb_ary_new2(img->nvox);
|
54
|
+
|
55
|
+
for(i = 0; i < 8; i++){
|
56
|
+
rb_ary_store(rb_data, i, rb_float_new((double) img->pixdim[i]));
|
57
|
+
}
|
58
|
+
|
59
|
+
return rb_data;
|
60
|
+
}
|
61
|
+
|
62
|
+
VALUE nifti_image_qform_code(VALUE self){
|
63
|
+
nifti_image *img = to_nifti_image(self);
|
64
|
+
|
65
|
+
return INT2NUM(img->qform_code);
|
66
|
+
}
|
67
|
+
|
68
|
+
VALUE nifti_image_sform_code(VALUE self){
|
69
|
+
nifti_image *img = to_nifti_image(self);
|
70
|
+
|
71
|
+
return INT2NUM(img->sform_code);
|
72
|
+
}
|
73
|
+
|
74
|
+
VALUE nifti_image_spacings_init(VALUE klass){
|
75
|
+
rb_define_method(klass, "dx", nifti_image_dx, 0);
|
76
|
+
rb_define_method(klass, "dy", nifti_image_dy, 0);
|
77
|
+
rb_define_method(klass, "dz", nifti_image_dz, 0);
|
78
|
+
rb_define_method(klass, "dt", nifti_image_dt, 0);
|
79
|
+
rb_define_method(klass, "du", nifti_image_du, 0);
|
80
|
+
rb_define_method(klass, "dv", nifti_image_dv, 0);
|
81
|
+
rb_define_method(klass, "dw", nifti_image_dw, 0);
|
82
|
+
rb_define_method(klass, "pixdim", nifti_image_pixdim, 0);
|
83
|
+
rb_define_method(klass, "qform_code", nifti_image_qform_code, 0);
|
84
|
+
rb_define_method(klass, "sform_code", nifti_image_sform_code, 0);
|
85
|
+
|
86
|
+
return klass;
|
87
|
+
}
|