c_nifti 0.0.1

data/ext/nifticlib/nifti_image_timings.c

@@ -0,0 +1,66 @@
+#include <ruby.h> // Ruby C extensions
+#include <nifti1_io.h> // standard NIfTI C library
+
+#include <nifti_image_converters.h>
+#include <nifti_image_timings.h>
+
+VALUE nifti_image_freq_dim(VALUE self){
+  nifti_image *img = to_nifti_image(self);
+
+  return INT2NUM(img->freq_dim);
+}
+
+VALUE nifti_image_phase_dim(VALUE self){
+  nifti_image *img = to_nifti_image(self);
+
+  return INT2NUM(img->phase_dim);
+}
+
+VALUE nifti_image_slice_dim(VALUE self){
+  nifti_image *img = to_nifti_image(self);
+
+  return INT2NUM(img->slice_dim);
+}
+
+VALUE nifti_image_slice_code(VALUE self){
+  nifti_image *img = to_nifti_image(self);
+
+  return INT2NUM(img->slice_code);
+}
+
+VALUE nifti_image_slice_start(VALUE self){
+  nifti_image *img = to_nifti_image(self);
+
+  return INT2NUM(img->slice_start);
+}
+
+VALUE nifti_image_slice_end(VALUE self){
+  nifti_image *img = to_nifti_image(self);
+
+  return INT2NUM(img->slice_end);
+}
+
+VALUE nifti_image_slice_duration(VALUE self){
+  nifti_image *img = to_nifti_image(self);
+
+  return rb_float_new((double) img->slice_duration);
+}
+
+VALUE nifti_image_toffset(VALUE self){
+  nifti_image *img = to_nifti_image(self);
+
+  return rb_float_new((double) img->toffset);
+}
+
+VALUE nifti_image_timings_init(VALUE klass){
+  rb_define_method(klass, "freq_dim", nifti_image_freq_dim, 0);
+  rb_define_method(klass, "phase_dim", nifti_image_phase_dim, 0);
+  rb_define_method(klass, "slice_dim", nifti_image_slice_dim, 0);
+  rb_define_method(klass, "slice_code", nifti_image_slice_code, 0);
+  rb_define_method(klass, "slice_start", nifti_image_slice_start, 0);
+  rb_define_method(klass, "slice_end", nifti_image_slice_end, 0);
+  rb_define_method(klass, "slice_duration", nifti_image_slice_duration, 0);
+  rb_define_method(klass, "toffset", nifti_image_toffset, 0);
+
+  return klass;
+}

data/ext/nifticlib/nifti_image_transforms.c

@@ -0,0 +1,38 @@
+#include <ruby.h> // Ruby C extensions
+#include <nifti1_io.h> // standard NIfTI C library
+
+#include <nifti_image_converters.h>
+#include <nifti_image_transforms.h>
+
+VALUE nifti_image_qto_xyz(VALUE self){
+  nifti_image *img = to_nifti_image(self);
+
+  return mat44_to_rb_array(img->qto_xyz);
+}
+
+VALUE nifti_image_qto_ijk(VALUE self){
+  nifti_image *img = to_nifti_image(self);
+
+  return mat44_to_rb_array(img->qto_ijk);
+}
+
+VALUE nifti_image_sto_xyz(VALUE self){
+  nifti_image *img = to_nifti_image(self);
+
+  return mat44_to_rb_array(img->sto_xyz);
+}
+
+VALUE nifti_image_sto_ijk(VALUE self){
+  nifti_image *img = to_nifti_image(self);
+
+  return mat44_to_rb_array(img->sto_ijk);
+}
+
+VALUE nifti_image_transforms_init(VALUE klass){
+  rb_define_method(klass, "qto_xyz", nifti_image_qto_xyz, 0);
+  rb_define_method(klass, "qto_ijk", nifti_image_qto_ijk, 0);
+  rb_define_method(klass, "sto_xyz", nifti_image_sto_xyz, 0);
+  rb_define_method(klass, "sto_ijk", nifti_image_sto_ijk, 0);
+
+  return klass;
+}

data/ext/nifticlib/nifticlib-2.0.0/CMakeLists.txt

@@ -0,0 +1,140 @@
+#File Generated by Hans J. Johnson
+#Please contact hans-johnson@uiowa.edu for making enhancments/corrections
+PROJECT(NIFTI)
+# Configure Dart testing support.
+INCLUDE(${CMAKE_ROOT}/Modules/Dart.cmake)
+
+SUBDIRS(znzlib niftilib)
+ADD_DEFINITIONS(-DHAVE_ZLIB)
+
+# add option to build shared libraries. The default is OFF to maintain the
+# current build behavior
+OPTION ( BUILD_SHARED_LIBS "Toggle building shared libraries")
+
+# Michael Hanke 2007-04-25 Note:
+# 'Utilities' is merged into the include install path to be able to easily
+# install into any other path if necessary. For the same reason lib, bin and
+# include dir for standalone builds are only set if not yet defined.
+
+###  USE AS PART OF ITK
+IF("${ITK_VERSION_MAJOR}" GREATER 0.0)
+#   MESSAGE(STATUS "---------------------ITK ZLIB  ${ITK_ZLIB_LIBRARIES}")
+  ADD_DEFINITIONS(-DHAVE_ZLIB)
+  ADD_DEFINITIONS(-DITKZLIB)
+  SET(PACKAGE_PREFIX "ITK")
+  SET(NIFTI_LIBRARY_PROPERTIES ${ITK_LIBRARY_PROPERTIES})
+  SET(NIFTI_INSTALL_BIN_DIR "${ITK_INSTALL_BIN_DIR_CM24}")
+  SET(NIFTI_INSTALL_LIB_DIR "${ITK_INSTALL_LIB_DIR_CM24}")
+  SET(NIFTI_INSTALL_INCLUDE_DIR "${ITK_INSTALL_INCLUDE_DIR_CM24}/Utilities")
+  SET(NIFTI_ZLIB_LIBRARIES ${ITK_ZLIB_LIBRARIES})
+  SET(NIFTI_INSTALL_NO_DEVELOPMENT ${ITK_INSTALL_NO_DEVELOPMENT})
+  SET(NIFTI_INSTALL_NO_LIBRARIES ${ITK_INSTALL_NO_LIBRARIES})
+
+ELSE("${ITK_VERSION_MAJOR}" GREATER 0.0)
+  SET(CPACK_PACKAGE_VERSION_MAJOR "2")
+  SET(CPACK_PACKAGE_VERSION_MINOR "0")
+  SET(CPACK_PACKAGE_VERSION_PATCH "0")
+###  USE AS STAND ALONE PACKAGE
+   FIND_PACKAGE(ZLIB)
+#  MESSAGE(STATUS "---------------------SYSTEM ZLIB ${ZLIB_LIBRARY}")
+  SET(PACKAGE_PREFIX "")
+  # Set default shared library version
+  # This library version will be applied to all libraries in the package
+  # unless it is not explicitely for a certain lib.
+  SET(NIFTI_SHAREDLIB_VERSION ${CPACK_PACKAGE_VERSION_MAJOR}.${CPACK_PACKAGE_VERSION_MINOR}.${CPACK_PACKAGE_VERSION_PATCH} )
+  STRING( REGEX MATCH "^[0-9]+" NIFTI_SHAREDLIB_SOVERSION ${NIFTI_SHAREDLIB_VERSION})
+  SET(NIFTI_LIBRARY_PROPERTIES VERSION ${NIFTI_SHAREDLIB_VERSION} SOVERSION ${NIFTI_SHAREDLIB_SOVERSION})
+
+  SET(NIFTI_INSTALL_BIN_DIR "${CMAKE_INSTALL_PREFIX}/bin")
+  SET(NIFTI_INSTALL_LIB_DIR "${CMAKE_INSTALL_PREFIX}/lib")
+  SET(NIFTI_INSTALL_INCLUDE_DIR "${CMAKE_INSTALL_PREFIX}/include/nifti")
+  SET(NIFTI_ZLIB_LIBRARIES ${ZLIB_LIBRARIES})
+  SET(NIFTI_INSTALL_NO_DEVELOPMENT 0)
+  SET(NIFTI_INSTALL_NO_LIBRARIES 0)
+
+  #Needs an if clause and more work before testing can take place.
+  SUBDIRS(Testing)
+  SUBDIRS(nifticdf utils)
+
+  OPTION(USE_FSL_CODE "If OFF, The copyright of this code is questionable for inclusion with nifti." OFF)
+  MARK_AS_ADVANCED(USE_FSL_CODE)
+
+  # the order of subdirs is important! fsliolob has to preceed examples
+  # as otherwise FSLIOLIB_SOURCE_DIR is undefined and hence the examples
+  # will fail to compile
+  IF(USE_FSL_CODE)
+    SUBDIRS(fsliolib)
+    SUBDIRS(examples)
+  ENDIF(USE_FSL_CODE)
+  ENABLE_TESTING()
+  INCLUDE(Dart)
+
+  ####################################
+  ### Define information necessary for packaging with CPACK (http://www.cmake.org/Wiki/CMake:Packaging_With_CPack)
+### The last section is concerned with installing the binaries and making distributions.
+INCLUDE(InstallRequiredSystemLibraries)
+
+SET(CPACK_PACKAGE_NAME "NIFTI")
+
+SET(CPACK_SOURCE_PACKAGE_FILE_NAME "${CPACK_PACKAGE_NAME}-dev")
+SET(CPACK_PACKAGE_DESCRIPTION_SUMMARY "Niftilib is a set of i/o libraries for reading and writing files in the nifti-1 data format. nifti-1 is a binary file format for storing medical image data, e.g. magnetic resonance image (MRI) and functional MRI (fMRI) brain images.")
+SET(CPACK_PACKAGE_DESCRIPTION_FILE "${NIFTI_SOURCE_DIR}/README")
+#SET(CPACK_RESOURCE_FILE_LICENSE "${NIFTI_SOURCE_DIR}/Copyright.txt")
+SET(CPACK_RESOURCE_FILE_LICENSE "${NIFTI_SOURCE_DIR}/README")
+
+SET(CPACK_PACKAGE_DEFAULT_LOCATION "/opt/${CPACK_PACKAGE_NAME}")
+#SET(CPACK_PACKAGE_INSTALL_DIRECTORY "NIFTI ${CPACK_PACKAGE_VERSION_MAJOR}.${CPACK_PACKAGE_VERSION_MINOR}")
+SET(CPACK_PACKAGE_INSTALL_DIRECTORY "${NIFTI}")
+SET(CPACK_PACKAGING_INSTALL_PREFIX "/")
+SET(CPACK_SET_DESTDIR ON)
+
+SET(CPACK_PACKAGE_VENDOR "NIFTI DFWG")
+
+SET(CPACK_SOURCE_GENERATOR "TGZ;TZ")
+#SET(CPACK_SOURCE_IGNORE_FILES "/CVS/;/\\.svn/;\\.swp$;\\.#;/#;\\.*~")
+SET(CPACK_SOURCE_IGNORE_FILES "")
+SET(CPACK_PACKAGE_EXECUTABLES "NIFTI";"A program for registering medical
+images with mutual information.")
+
+IF(WIN32 AND NOT UNIX)
+  SET(CPACK_PACKAGE_INSTALL_REGISTRY_KEY
+"${CPACK_PACKAGE_NAME}-${CPACK_PACKAGE_VERSION_MAJOR}.${CPACK_PACKAGE_VERSION_MINOR}.${CPACK_PACKAGE_VERSION_PATCH}")
+  # There is a bug in NSI that does not handle full unix paths properly. Make
+  # sure there is at least one set of four (4) backlasshes.
+  SET(CPACK_PACKAGE_ICON
+"${CMake_SOURCE_DIR}/Utilities/Release\\\\InstallIcon.bmp")
+  SET(CPACK_NSIS_INSTALLED_ICON_NAME "bin\\\\MyExecutable.exe")
+  SET(CPACK_NSIS_DISPLAY_NAME "${CPACK_PACKAGE_INSTALL_DIRECTORY} My Famous
+Project")
+  SET(CPACK_NSIS_HELP_LINK "http:\\\\\\\\www.nitrc.org")
+  SET(CPACK_NSIS_URL_INFO_ABOUT "http:\\\\\\\\www.nitrc.org")
+  SET(CPACK_NSIS_CONTACT "xyz@domain.edu")
+  SET(CPACK_NSIS_MODIFY_PATH ON)
+ELSE(WIN32 AND NOT UNIX)
+  SET(CPACK_STRIP_FILES OFF)
+  SET(CPACK_SOURCE_STRIP_FILES OFF)
+ENDIF(WIN32 AND NOT UNIX)
+
+INCLUDE(CPack)
+
+
+ENDIF("${ITK_VERSION_MAJOR}" GREATER 0.0)
+
+
+
+IF(NOT DEFINED NIFTI_INSTALL_LIB_DIR)
+  MESSAGE(FATAL_ERROR "Must set NIFTI_INSTALL_LIB_DIR.")
+ENDIF(NOT DEFINED NIFTI_INSTALL_LIB_DIR)
+IF(NOT DEFINED NIFTI_INSTALL_BIN_DIR)
+  MESSAGE(FATAL_ERROR "Must set NIFTI_INSTALL_BIN_DIR.")
+ENDIF(NOT DEFINED NIFTI_INSTALL_BIN_DIR)
+IF(NOT DEFINED NIFTI_INSTALL_INCLUDE_DIR)
+  MESSAGE(FATAL_ERROR "Must set NIFTI_INSTALL_INCLUDE_DIR.")
+ENDIF(NOT DEFINED NIFTI_INSTALL_INCLUDE_DIR)
+
+
+
+
+
+
+

data/ext/nifticlib/nifticlib-2.0.0/CTestConfig.cmake

@@ -0,0 +1,13 @@
+## This file should be placed in the root directory of your project.
+## Then modify the CMakeLists.txt file in the root directory of your
+## project to incorporate the testing dashboard.
+## # The following are required to uses Dart and the Cdash dashboard
+##   ENABLE_TESTING()
+##   INCLUDE(Dart)
+set(CTEST_PROJECT_NAME "NIFTI")
+set(CTEST_NIGHTLY_START_TIME "00:00:00 EST")
+
+set(CTEST_DROP_METHOD "http")
+set(CTEST_DROP_SITE "testing.psychiatry.uiowa.edu")
+set(CTEST_DROP_LOCATION "/CDash/submit.php?project=NIFTI")
+set(CTEST_DROP_SITE_CDASH TRUE)

data/ext/nifticlib/nifticlib-2.0.0/LICENSE

@@ -0,0 +1,9 @@
+Niftilib has been developed by members of the NIFTI DFWG and volunteers in the
+neuroimaging community and serves as a reference implementation of the nifti-1
+file format.
+
+http://nifti.nimh.nih.gov/
+
+Nifticlib code is released into the public domain, developers are encouraged to
+incorporate niftilib code into their applications, and, to contribute changes
+and enhancements to niftilib.

data/ext/nifticlib/nifticlib-2.0.0/Makefile

@@ -0,0 +1,265 @@
+
+SHELL		=	csh
+
+## Projects
+NIFTI		=	niftilib
+NIFTICDF	=	nifticdf
+ZNZ		=	znzlib
+FSLIO		=	fsliolib
+EXAMPLES	=	examples
+UTILS		=	utils
+TESTING		=	Testing
+UTILS_PROGS	=	nifti_stats nifti_tool nifti1_test
+THIS_DIR	=	`basename ${PWD}`
+
+## Note the TARFILE_NAME embeds the release version number
+TARFILE_NAME	=	nifticlib-2.0.0
+
+
+## Compiler  defines
+cc		=	gcc
+CC		=	gcc
+AR		=	ar
+RANLIB  = ranlib
+DEPENDFLAGS	=	-MM
+GNU_ANSI_FLAGS	= 	-Wall -ansi -pedantic
+ANSI_FLAGS	= 	${GNU_ANSI_FLAGS}
+CFLAGS		=	$(ANSI_FLAGS) -fPIC
+
+## Command defines
+## gmake does not work on MacOSX or some versions of linux MAKE  = gmake 
+RM		=	rm
+MV		=	mv
+CP		=	cp
+TAR		=	tar
+
+
+## Installation
+INSTALL_BIN_DIR	=	bin
+INSTALL_LIB_DIR	=	lib
+INSTALL_INC_DIR	=	include
+
+
+## Zlib defines
+ZLIB_INC	=	-I/usr/include
+ZLIB_PATH	=	-L/usr/lib
+ZLIB_LIBS 	= 	$(ZLIB_PATH) -lm -lz 
+
+##############################################################
+# platform specific redefines (to use, set ARCH appropriately)
+
+##ARCH = X86_64
+
+ifeq ($(ARCH),SGI) ## SGI 32bit
+ZLIB_INC	=	-I/usr/freeware/include
+ZLIB_PATH	=	-L/usr/freeware/lib32
+RANLIB		=	echo "ranlib not needed"
+else
+ifeq ($(ARCH),I386) ## 32-bit Linux
+ZLIB_INC	=	-I/usr/include
+ZLIB_PATH	=	-L/usr/lib
+TAR		=	/bin/tar
+else
+ifeq ($(ARCH),X86_64) ## 64-bit Linux
+ZLIB_INC	=
+ZLIB_PATH	=
+ZLIB_LIBS 	= 	$(ZLIB_PATH) -lm -lz 
+TAR		=	/bin/tar
+endif
+endif
+endif
+
+
+#################################################################
+
+## ZNZ defines
+ZNZ_INC		=	-I../$(ZNZ)
+ZNZ_PATH	=	-L../$(ZNZ)
+ZNZ_LIBS	=	$(ZNZ_PATH)  -lznz
+USEZLIB         =       -DHAVE_ZLIB
+
+## NIFTI defines
+NIFTI_INC	=	-I../$(NIFTI)
+NIFTI_PATH	=	-L../$(NIFTI)
+NIFTI_LIBS	=	$(NIFTI_PATH) -lniftiio
+
+## NIFTICDF defines
+NIFTICDF_INC	=	-I../$(NIFTICDF)
+NIFTICDF_PATH	=	-L../$(NIFTICDF)
+NIFTICDF_LIBS	=	$(NIFTICDF_PATH) -lnifticdf
+
+## FSLIO defines
+FSLIO_INC	=	-I../$(FSLIO)
+FSLIO_PATH	=	-L../$(FSLIO)
+FSLIO_LIBS	=	$(FSLIO_PATH) -lfslio
+
+
+
+## Rules
+
+.SUFFIXES: .c .o
+
+.c.o:
+	$(CC) -c $(CFLAGS) $(INCFLAGS) $<
+
+## Targets
+
+all:	   znz nifti nifticdf fslio install
+
+install:   znz_install nifti_install nifticdf_install fslio_install utils_install
+
+clean:	   znz_clean nifti_clean nifticdf_clean fslio_clean examples_clean \
+	   utils_clean regress_clean
+
+clean_all: clean regress_clean_all install_clean doc_clean
+
+
+znz:
+	echo "arch is $(ARCH)"
+	(cd $(ZNZ); $(MAKE) depend; $(MAKE) lib;)
+	@echo " ----------- $(ZNZ) build completed."
+	@echo ""
+
+nifti:	znz
+	(cd $(NIFTI); $(MAKE) depend; $(MAKE) lib;)
+	@echo " ----------- $(NIFTI) build completed."
+	@echo ""
+
+nifticdf:nifti
+	(cd $(NIFTICDF); $(MAKE) depend; $(MAKE) lib;)
+	@echo " ----------- $(NIFTICDF) build completed."
+	@echo ""
+
+fslio:	nifti
+	(cd $(FSLIO); $(MAKE) depend; $(MAKE) lib;)
+	@echo " ----------  $(FSLIO) build completed."
+	@echo ""
+
+example:nifti
+	(cd $(EXAMPLES); $(MAKE) all;)
+	@echo Example programs built.
+	@echo ""
+
+
+utils:  nifti nifticdf
+	(cd $(UTILS); $(MAKE) all;)
+	@echo Utility programs built.
+	@echo ""
+
+doc:
+	(cd docs; doxygen Doxy_nifti.txt;)
+	@echo "doxygen doc rebuilt, run netscape docs/html/index.html to view."
+	@echo ""
+
+regress_data:
+	(cd $(TESTING); $(MAKE) regress_data 'RM=$(RM)' 'TAR=$(TAR)'; )
+	@echo ""
+	@echo Regression testing data installed.
+	@echo See Testing/README_regress for details.
+	@echo ""
+
+$(INSTALL_BIN_DIR):
+	mkdir -p $@
+
+$(INSTALL_INC_DIR):
+	mkdir -p $@
+
+$(INSTALL_LIB_DIR):
+	mkdir -p $@
+
+znz_install: $(INSTALL_INC_DIR) $(INSTALL_LIB_DIR)
+	($(CP) $(ZNZ)/*.a $(INSTALL_LIB_DIR); $(CP) $(ZNZ)/*.h $(INSTALL_INC_DIR);)
+	$(RANLIB) $(INSTALL_LIB_DIR)/*.a
+	@echo " $(ZNZ) installed."
+	@echo ""
+
+nifti_install: $(INSTALL_INC_DIR) $(INSTALL_LIB_DIR)
+	($(CP) $(NIFTI)/*.a $(INSTALL_LIB_DIR); $(CP) $(NIFTI)/*.h $(INSTALL_INC_DIR);)
+	$(RANLIB) $(INSTALL_LIB_DIR)/*.a
+	@echo " $(NIFTI) installed."
+	@echo ""
+
+nifticdf_install: $(INSTALL_INC_DIR) $(INSTALL_LIB_DIR)
+	($(CP) $(NIFTICDF)/*.a $(INSTALL_LIB_DIR); $(CP) $(NIFTICDF)/*.h $(INSTALL_INC_DIR);)
+	$(RANLIB) $(INSTALL_LIB_DIR)/*.a
+	@echo " $(NIFTI) installed."
+	@echo ""
+
+fslio_install: $(INSTALL_INC_DIR) $(INSTALL_LIB_DIR)
+	($(CP) $(FSLIO)/*.a $(INSTALL_LIB_DIR); $(CP) $(FSLIO)/*.h $(INSTALL_INC_DIR);)
+	$(RANLIB) $(INSTALL_LIB_DIR)/*.a
+	@echo " $(FSLIO) installed."
+	@echo ""
+
+utils_install: utils $(INSTALL_BIN_DIR)
+	(cd $(UTILS); $(CP) $(UTILS_PROGS) ../$(INSTALL_BIN_DIR);)
+	@echo " $(UTILS) installed."
+	@echo ""
+
+install_clean:
+	($(RM) -f $(INSTALL_INC_DIR)/* $(INSTALL_LIB_DIR)/* $(INSTALL_BIN_DIR)/*;)
+
+znz_clean:
+	(cd $(ZNZ); $(RM) -f *.o *.a core; $(RM) -f depend.mk;)
+
+nifti_clean:
+	(cd $(NIFTI); $(RM) -f *.o *.a core; $(RM) -f depend.mk;)
+
+nifticdf_clean:
+	(cd $(NIFTICDF); $(RM) -f *.o *.a core; $(RM) -f depend.mk;)
+
+fslio_clean:
+	(cd $(FSLIO); $(RM) -f *.o *.a core; $(RM) -f depend.mk;)
+
+examples_clean:
+	(cd $(EXAMPLES); $(MAKE) clean;)
+
+utils_clean:
+	(cd $(UTILS); $(MAKE) clean;)
+
+doc_clean:
+	($(RM) -fr docs/html;)
+
+regress_clean:
+	(cd $(TESTING); $(MAKE) regress_clean; )
+
+regress_clean_all:
+	(cd $(TESTING); $(MAKE) regress_clean_all; )
+
+tar:
+	(cd .. ; ln -s $(THIS_DIR) ${TARFILE_NAME} ; \
+	$(TAR) --exclude=CVS -cf ${TARFILE_NAME}.tar ${TARFILE_NAME}/*; \
+	rm -f ${TARFILE_NAME});
+	@echo ''
+	@echo 'tar file ../${TARFILE_NAME}.tar has been created.'
+	@echo ''
+
+
+help:
+	@echo ""
+	@echo "all:           build and install znz, nifti1 and fslio"
+	@echo "               libraries, and the utils programs"
+	@echo "install:       install znz, nifti1, and fslio libraries"
+	@echo "doc:           build the doxygen docs for this project."
+	@echo "               (Need doxygen installed, see"
+	@echo "               http://www.stack.nl/~dimitri/doxygen/index.html"
+	@echo "tar:           make a tar file of all nifti_io code, put in .."
+	@echo ""
+	@echo "clean:         remove .o .a etc. files from source directories,"
+	@echo "               and remove examples and utils programs"
+	@echo "clean_all:     make clean and delete all installed files in bin,"
+	@echo "               include and lib, and remove any autogenerated"
+	@echo "               docs (docs/html)"
+	@echo ""
+	@echo "znz:              build the znz library"
+	@echo "znz_install:      install the znz library"
+	@echo "nifti:            build the nifti1 library"
+	@echo "nifti_install:    install the nifti1 library"
+	@echo "nifticdf:         build the nifti1 library"
+	@echo "nifticdf_install: install the nifti1 library"
+	@echo "fslio:            build the fslio library"
+	@echo "fslio_install:    install the fslio library"
+	@echo "example:          make the example program(s)"
+	@echo "utils:            make the utils programs"
+	@echo "utils_install:    install the utils programs"
+	@echo ""