c_nifti 0.0.1
Sign up to get free protection for your applications and to get access to all the features.
- checksums.yaml +7 -0
- data/.gitignore +37 -0
- data/.rspec +2 -0
- data/.ruby-gemset +1 -0
- data/.ruby-version +1 -0
- data/COPYING +621 -0
- data/COPYING.lesser +166 -0
- data/Gemfile +4 -0
- data/README.md +117 -0
- data/Rakefile +6 -0
- data/c_nifti.gemspec +31 -0
- data/ext/nifticlib/extconf.rb +30 -0
- data/ext/nifticlib/include/nifti_image.h +2 -0
- data/ext/nifticlib/include/nifti_image_converters.h +3 -0
- data/ext/nifticlib/include/nifti_image_dimensions.h +1 -0
- data/ext/nifticlib/include/nifti_image_intents.h +1 -0
- data/ext/nifticlib/include/nifti_image_metadata.h +1 -0
- data/ext/nifticlib/include/nifti_image_quaternions.h +1 -0
- data/ext/nifticlib/include/nifti_image_spacings.h +1 -0
- data/ext/nifticlib/include/nifti_image_timings.h +1 -0
- data/ext/nifticlib/include/nifti_image_transforms.h +1 -0
- data/ext/nifticlib/nifti_image.c +169 -0
- data/ext/nifticlib/nifti_image_converters.c +65 -0
- data/ext/nifticlib/nifti_image_dimensions.c +113 -0
- data/ext/nifticlib/nifti_image_intents.c +45 -0
- data/ext/nifticlib/nifti_image_metadata.c +133 -0
- data/ext/nifticlib/nifti_image_quaternions.c +59 -0
- data/ext/nifticlib/nifti_image_spacings.c +87 -0
- data/ext/nifticlib/nifti_image_timings.c +66 -0
- data/ext/nifticlib/nifti_image_transforms.c +38 -0
- data/ext/nifticlib/nifticlib-2.0.0/CMakeLists.txt +140 -0
- data/ext/nifticlib/nifticlib-2.0.0/CTestConfig.cmake +13 -0
- data/ext/nifticlib/nifticlib-2.0.0/LICENSE +9 -0
- data/ext/nifticlib/nifticlib-2.0.0/Makefile +265 -0
- data/ext/nifticlib/nifticlib-2.0.0/Makefile.cross_mingw32 +94 -0
- data/ext/nifticlib/nifticlib-2.0.0/README +79 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/CMakeLists.txt +7 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/Data/ATestReferenceImageForReadingAndWriting.nii.gz +0 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/Makefile +21 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/README_regress +50 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/@show.diffs +33 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/@test +80 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/CMakeLists.txt +47 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/bricks_test.sh +32 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/comment_test.sh +65 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/dci_test.sh +46 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/dsets_test.sh +61 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/dts_test.sh +75 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/fetch_data_test.sh +45 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/mod_header_test.sh +60 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/newfiles_test.sh +36 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c01.versions +10 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c02.nt.help +5 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c03.hist +5 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c04.disp.anat0.info +7 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c05.mod.hdr +9 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c06.add.ext +22 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c07.cbl.4bricks +8 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c08.dts.19.36.11 +4 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c09.dts4.compare +9 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c10.dci.ts4 +15 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c10a.dci.run.210 +16 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c11.add.comment +8 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c12.check.comments +7 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c13.check.hdrs +5 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c14.make.dsets +21 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c15.new.files +21 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c16.rand.swap +35 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c17.file.case +34 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/niftilib/CMakeLists.txt +15 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/niftilib/nifti_test.c +690 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/niftilib/nifti_test2.c +32 -0
- data/ext/nifticlib/nifticlib-2.0.0/Updates.txt +110 -0
- data/ext/nifticlib/nifticlib-2.0.0/bin/.gitkeep +0 -0
- data/ext/nifticlib/nifticlib-2.0.0/docs/Doxy_nifti.txt +123 -0
- data/ext/nifticlib/nifticlib-2.0.0/docs/Doxyfile.ORIG +746 -0
- data/ext/nifticlib/nifticlib-2.0.0/examples/CMakeLists.txt +15 -0
- data/ext/nifticlib/nifticlib-2.0.0/examples/Makefile +48 -0
- data/ext/nifticlib/nifticlib-2.0.0/examples/clib_01_read_write.c +94 -0
- data/ext/nifticlib/nifticlib-2.0.0/examples/fsl_api_driver.c +142 -0
- data/ext/nifticlib/nifticlib-2.0.0/fsliolib/CMakeLists.txt +32 -0
- data/ext/nifticlib/nifticlib-2.0.0/fsliolib/Makefile +29 -0
- data/ext/nifticlib/nifticlib-2.0.0/fsliolib/fslio.c +2426 -0
- data/ext/nifticlib/nifticlib-2.0.0/fsliolib/fslio.tcl +83 -0
- data/ext/nifticlib/nifticlib-2.0.0/fsliolib/imcp +65 -0
- data/ext/nifticlib/nifticlib-2.0.0/fsliolib/imglob +59 -0
- data/ext/nifticlib/nifticlib-2.0.0/fsliolib/imln +37 -0
- data/ext/nifticlib/nifticlib-2.0.0/fsliolib/immv +64 -0
- data/ext/nifticlib/nifticlib-2.0.0/fsliolib/imrm +29 -0
- data/ext/nifticlib/nifticlib-2.0.0/fsliolib/imtest +53 -0
- data/ext/nifticlib/nifticlib-2.0.0/fsliolib/remove_ext +33 -0
- data/ext/nifticlib/nifticlib-2.0.0/include/.gitkeep +0 -0
- data/ext/nifticlib/nifticlib-2.0.0/nifticdf/CMakeLists.txt +28 -0
- data/ext/nifticlib/nifticlib-2.0.0/nifticdf/Makefile +28 -0
- data/ext/nifticlib/nifticlib-2.0.0/nifticdf/nifticdf.c +11107 -0
- data/ext/nifticlib/nifticlib-2.0.0/niftilib/CMakeLists.txt +33 -0
- data/ext/nifticlib/nifticlib-2.0.0/niftilib/Makefile +31 -0
- data/ext/nifticlib/nifticlib-2.0.0/niftilib/nifti1_io.c +7509 -0
- data/ext/nifticlib/nifticlib-2.0.0/packaging/DevPackage.template +18 -0
- data/ext/nifticlib/nifticlib-2.0.0/packaging/nifticlib.spec +62 -0
- data/ext/nifticlib/nifticlib-2.0.0/real_easy/nifti1_read_write.c +361 -0
- data/ext/nifticlib/nifticlib-2.0.0/utils/CMakeLists.txt +73 -0
- data/ext/nifticlib/nifticlib-2.0.0/utils/Makefile +55 -0
- data/ext/nifticlib/nifticlib-2.0.0/utils/nifti1_test.c +95 -0
- data/ext/nifticlib/nifticlib-2.0.0/utils/nifti_stats.c +95 -0
- data/ext/nifticlib/nifticlib-2.0.0/utils/nifti_tool.c +4193 -0
- data/ext/nifticlib/nifticlib-2.0.0/utils/nifti_tool.h +163 -0
- data/ext/nifticlib/nifticlib-2.0.0/znzlib/CMakeLists.txt +31 -0
- data/ext/nifticlib/nifticlib-2.0.0/znzlib/Makefile +33 -0
- data/ext/nifticlib/nifticlib-2.0.0/znzlib/znzlib.c +322 -0
- data/ext/nifticlib/nifticlib.c +107 -0
- data/ext/nifticlib/patches/nifticlib_fpic.patch +13 -0
- data/features/read_modify_write.feature +11 -0
- data/features/step_definitions/nifti_image_steps.rb +16 -0
- data/features/support/env.rb +14 -0
- data/features/support/fixtures/sample.nii.gz +0 -0
- data/lib/c_nifti.rb +9 -0
- data/lib/c_nifti/data.rb +70 -0
- data/lib/c_nifti/header.rb +16 -0
- data/lib/c_nifti/header_element.rb +13 -0
- data/lib/c_nifti/header_element/datatype.rb +49 -0
- data/lib/c_nifti/header_element/datatype/base.rb +9 -0
- data/lib/c_nifti/header_element/datatype/binary.rb +11 -0
- data/lib/c_nifti/header_element/datatype/double.rb +11 -0
- data/lib/c_nifti/header_element/datatype/float.rb +11 -0
- data/lib/c_nifti/header_element/datatype/long_double.rb +11 -0
- data/lib/c_nifti/header_element/datatype/long_long.rb +11 -0
- data/lib/c_nifti/header_element/datatype/signed_char.rb +11 -0
- data/lib/c_nifti/header_element/datatype/signed_int.rb +11 -0
- data/lib/c_nifti/header_element/datatype/signed_short.rb +11 -0
- data/lib/c_nifti/header_element/datatype/unsigned_char.rb +11 -0
- data/lib/c_nifti/header_element/datatype/unsigned_int.rb +11 -0
- data/lib/c_nifti/header_element/datatype/unsigned_long_long.rb +11 -0
- data/lib/c_nifti/header_element/datatype/unsigned_short.rb +11 -0
- data/lib/c_nifti/header_element/dimensions.rb +53 -0
- data/lib/c_nifti/header_element/intents.rb +25 -0
- data/lib/c_nifti/header_element/metadata.rb +49 -0
- data/lib/c_nifti/header_element/miscellaneous.rb +25 -0
- data/lib/c_nifti/header_element/quaternions.rb +33 -0
- data/lib/c_nifti/header_element/spacings.rb +45 -0
- data/lib/c_nifti/header_element/timings.rb +37 -0
- data/lib/c_nifti/header_element/transforms.rb +21 -0
- data/lib/c_nifti/image.rb +31 -0
- data/lib/c_nifti/version.rb +3 -0
- data/lib/nifticlib.rb +1 -0
- data/spec/data_spec.rb +112 -0
- data/spec/factories/nifti_images.rb +9 -0
- data/spec/header_element/datatype/base_spec.rb +9 -0
- data/spec/header_element/datatype/binary_spec.rb +9 -0
- data/spec/header_element/datatype/double_spec.rb +9 -0
- data/spec/header_element/datatype/float_spec.rb +9 -0
- data/spec/header_element/datatype/long_double_spec.rb +9 -0
- data/spec/header_element/datatype/long_long_spec.rb +9 -0
- data/spec/header_element/datatype/signed_char_spec.rb +9 -0
- data/spec/header_element/datatype/signed_int_spec.rb +9 -0
- data/spec/header_element/datatype/signed_short_spec.rb +9 -0
- data/spec/header_element/datatype/unsigned_char_spec.rb +9 -0
- data/spec/header_element/datatype/unsigned_int_spec.rb +9 -0
- data/spec/header_element/datatype/unsigned_long_long.rb +9 -0
- data/spec/header_element/datatype/unsigned_short_spec.rb +9 -0
- data/spec/header_element/datatype_spec.rb +109 -0
- data/spec/header_element/dimensions_spec.rb +105 -0
- data/spec/header_element/intents_spec.rb +48 -0
- data/spec/header_element/metadata_spec.rb +96 -0
- data/spec/header_element/miscellaneous_spec.rb +48 -0
- data/spec/header_element/quaternions_spec.rb +64 -0
- data/spec/header_element/spacings_spec.rb +88 -0
- data/spec/header_element/timings_spec.rb +72 -0
- data/spec/header_element/transforms_spec.rb +64 -0
- data/spec/image_spec.rb +39 -0
- data/spec/spec_helper.rb +85 -0
- metadata +363 -0
@@ -0,0 +1,109 @@
|
|
1
|
+
require 'spec_helper'
|
2
|
+
|
3
|
+
describe CNifti::HeaderElement::Datatype do
|
4
|
+
describe 'to_datatype' do
|
5
|
+
context 'with a Binary' do
|
6
|
+
let (:int_datatype) { CNifti::HeaderElement::Datatype::Binary.to_i }
|
7
|
+
|
8
|
+
it 'is expected raise a NotImplementedError' do
|
9
|
+
expect(CNifti::HeaderElement::Datatype.to_datatype(int_datatype)).to eq(CNifti::HeaderElement::Datatype::Binary)
|
10
|
+
end
|
11
|
+
end
|
12
|
+
|
13
|
+
context 'with a Double' do
|
14
|
+
let (:int_datatype) { CNifti::HeaderElement::Datatype::Double.to_i }
|
15
|
+
|
16
|
+
it 'is expected raise a NotImplementedError' do
|
17
|
+
expect(CNifti::HeaderElement::Datatype.to_datatype(int_datatype)).to eq(CNifti::HeaderElement::Datatype::Double)
|
18
|
+
end
|
19
|
+
end
|
20
|
+
|
21
|
+
context 'with a Float' do
|
22
|
+
let (:int_datatype) { CNifti::HeaderElement::Datatype::Float.to_i }
|
23
|
+
|
24
|
+
it 'is expected raise a NotImplementedError' do
|
25
|
+
expect(CNifti::HeaderElement::Datatype.to_datatype(int_datatype)).to eq(CNifti::HeaderElement::Datatype::Float)
|
26
|
+
end
|
27
|
+
end
|
28
|
+
|
29
|
+
context 'with a LongDouble' do
|
30
|
+
let (:int_datatype) { CNifti::HeaderElement::Datatype::LongDouble.to_i }
|
31
|
+
|
32
|
+
it 'is expected raise a NotImplementedError' do
|
33
|
+
expect(CNifti::HeaderElement::Datatype.to_datatype(int_datatype)).to eq(CNifti::HeaderElement::Datatype::LongDouble)
|
34
|
+
end
|
35
|
+
end
|
36
|
+
|
37
|
+
context 'with a LongLong' do
|
38
|
+
let (:int_datatype) { CNifti::HeaderElement::Datatype::LongLong.to_i }
|
39
|
+
|
40
|
+
it 'is expected raise a NotImplementedError' do
|
41
|
+
expect(CNifti::HeaderElement::Datatype.to_datatype(int_datatype)).to eq(CNifti::HeaderElement::Datatype::LongLong)
|
42
|
+
end
|
43
|
+
end
|
44
|
+
|
45
|
+
context 'with a SignedChar' do
|
46
|
+
let (:int_datatype) { CNifti::HeaderElement::Datatype::SignedChar.to_i }
|
47
|
+
|
48
|
+
it 'is expected raise a NotImplementedError' do
|
49
|
+
expect(CNifti::HeaderElement::Datatype.to_datatype(int_datatype)).to eq(CNifti::HeaderElement::Datatype::SignedChar)
|
50
|
+
end
|
51
|
+
end
|
52
|
+
|
53
|
+
context 'with a SignedInt' do
|
54
|
+
let (:int_datatype) { CNifti::HeaderElement::Datatype::SignedInt.to_i }
|
55
|
+
|
56
|
+
it 'is expected raise a NotImplementedError' do
|
57
|
+
expect(CNifti::HeaderElement::Datatype.to_datatype(int_datatype)).to eq(CNifti::HeaderElement::Datatype::SignedInt)
|
58
|
+
end
|
59
|
+
end
|
60
|
+
|
61
|
+
context 'with a SignedShort' do
|
62
|
+
let (:int_datatype) { CNifti::HeaderElement::Datatype::SignedShort.to_i }
|
63
|
+
|
64
|
+
it 'is expected raise a NotImplementedError' do
|
65
|
+
expect(CNifti::HeaderElement::Datatype.to_datatype(int_datatype)).to eq(CNifti::HeaderElement::Datatype::SignedShort)
|
66
|
+
end
|
67
|
+
end
|
68
|
+
|
69
|
+
context 'with a UnsignedChar' do
|
70
|
+
let (:int_datatype) { CNifti::HeaderElement::Datatype::UnsignedChar.to_i }
|
71
|
+
|
72
|
+
it 'is expected raise a NotImplementedError' do
|
73
|
+
expect(CNifti::HeaderElement::Datatype.to_datatype(int_datatype)).to eq(CNifti::HeaderElement::Datatype::UnsignedChar)
|
74
|
+
end
|
75
|
+
end
|
76
|
+
|
77
|
+
context 'with a UnsignedInt' do
|
78
|
+
let (:int_datatype) { CNifti::HeaderElement::Datatype::UnsignedInt.to_i }
|
79
|
+
|
80
|
+
it 'is expected raise a NotImplementedError' do
|
81
|
+
expect(CNifti::HeaderElement::Datatype.to_datatype(int_datatype)).to eq(CNifti::HeaderElement::Datatype::UnsignedInt)
|
82
|
+
end
|
83
|
+
end
|
84
|
+
|
85
|
+
context 'with a UnsignedLongLong' do
|
86
|
+
let (:int_datatype) { CNifti::HeaderElement::Datatype::UnsignedLongLong.to_i }
|
87
|
+
|
88
|
+
it 'is expected raise a NotImplementedError' do
|
89
|
+
expect(CNifti::HeaderElement::Datatype.to_datatype(int_datatype)).to eq(CNifti::HeaderElement::Datatype::UnsignedLongLong)
|
90
|
+
end
|
91
|
+
end
|
92
|
+
|
93
|
+
context 'with a UnsignedShort' do
|
94
|
+
let (:int_datatype) { CNifti::HeaderElement::Datatype::UnsignedShort.to_i }
|
95
|
+
|
96
|
+
it 'is expected raise a NotImplementedError' do
|
97
|
+
expect(CNifti::HeaderElement::Datatype.to_datatype(int_datatype)).to eq(CNifti::HeaderElement::Datatype::UnsignedShort)
|
98
|
+
end
|
99
|
+
end
|
100
|
+
|
101
|
+
context 'with a invalid type' do
|
102
|
+
let (:int_datatype) { -1 }
|
103
|
+
|
104
|
+
it 'is expected raise a NotImplementedError' do
|
105
|
+
expect{ CNifti::HeaderElement::Datatype.to_datatype(int_datatype) }.to raise_error(TypeError)
|
106
|
+
end
|
107
|
+
end
|
108
|
+
end
|
109
|
+
end
|
@@ -0,0 +1,105 @@
|
|
1
|
+
require 'spec_helper'
|
2
|
+
|
3
|
+
describe CNifti::Header do
|
4
|
+
let!(:nifti_image) { FactoryGirl.build(:nifti_image) }
|
5
|
+
subject { CNifti::Header.new(nifti_image) }
|
6
|
+
|
7
|
+
describe 'dimensions' do
|
8
|
+
describe 'ndim' do
|
9
|
+
it 'is expected call the ndim method from NIfTICLib::NIfTIImage' do
|
10
|
+
nifti_image.expects(:ndim).returns(4)
|
11
|
+
|
12
|
+
expect(subject.ndim).to eq(4)
|
13
|
+
end
|
14
|
+
end
|
15
|
+
|
16
|
+
describe 'nvox' do
|
17
|
+
it 'is expected call the nvox method from NIfTICLib::NIfTIImage' do
|
18
|
+
nifti_image.expects(:nvox).returns(4)
|
19
|
+
|
20
|
+
expect(subject.nvox).to eq(4)
|
21
|
+
end
|
22
|
+
end
|
23
|
+
|
24
|
+
describe 'nx' do
|
25
|
+
it 'is expected call the nx method from NIfTICLib::NIfTIImage' do
|
26
|
+
nifti_image.expects(:nx).returns(4)
|
27
|
+
|
28
|
+
expect(subject.nx).to eq(4)
|
29
|
+
end
|
30
|
+
end
|
31
|
+
|
32
|
+
describe 'ny' do
|
33
|
+
it 'is expected call the ny method from NIfTICLib::NIfTIImage' do
|
34
|
+
nifti_image.expects(:ny).returns(4)
|
35
|
+
|
36
|
+
expect(subject.ny).to eq(4)
|
37
|
+
end
|
38
|
+
end
|
39
|
+
|
40
|
+
describe 'nz' do
|
41
|
+
it 'is expected call the nz method from NIfTICLib::NIfTIImage' do
|
42
|
+
nifti_image.expects(:nz).returns(4)
|
43
|
+
|
44
|
+
expect(subject.nz).to eq(4)
|
45
|
+
end
|
46
|
+
end
|
47
|
+
|
48
|
+
describe 'nt' do
|
49
|
+
it 'is expected call the nt method from NIfTICLib::NIfTIImage' do
|
50
|
+
nifti_image.expects(:nt).returns(4)
|
51
|
+
|
52
|
+
expect(subject.nt).to eq(4)
|
53
|
+
end
|
54
|
+
end
|
55
|
+
|
56
|
+
describe 'nu' do
|
57
|
+
it 'is expected call the nu method from NIfTICLib::NIfTIImage' do
|
58
|
+
nifti_image.expects(:nu).returns(4)
|
59
|
+
|
60
|
+
expect(subject.nu).to eq(4)
|
61
|
+
end
|
62
|
+
end
|
63
|
+
|
64
|
+
describe 'nv' do
|
65
|
+
it 'is expected call the nv method from NIfTICLib::NIfTIImage' do
|
66
|
+
nifti_image.expects(:nv).returns(4)
|
67
|
+
|
68
|
+
expect(subject.nv).to eq(4)
|
69
|
+
end
|
70
|
+
end
|
71
|
+
|
72
|
+
describe 'nw' do
|
73
|
+
it 'is expected call the nw method from NIfTICLib::NIfTIImage' do
|
74
|
+
nifti_image.expects(:nw).returns(4)
|
75
|
+
|
76
|
+
expect(subject.nw).to eq(4)
|
77
|
+
end
|
78
|
+
end
|
79
|
+
|
80
|
+
describe 'dim' do
|
81
|
+
it 'is expected call the dim method from NIfTICLib::NIfTIImage' do
|
82
|
+
nifti_image.expects(:dim).returns([4])
|
83
|
+
|
84
|
+
expect(subject.dim).to eq([4])
|
85
|
+
end
|
86
|
+
end
|
87
|
+
|
88
|
+
describe 'nbyper' do
|
89
|
+
it 'is expected call the nbyper method from NIfTICLib::NIfTIImage' do
|
90
|
+
nifti_image.expects(:nbyper).returns([4])
|
91
|
+
|
92
|
+
expect(subject.nbyper).to eq([4])
|
93
|
+
end
|
94
|
+
end
|
95
|
+
|
96
|
+
describe 'datatype' do
|
97
|
+
it 'is expected call the datatype method from NIfTICLib::NIfTIImage and convert it to a Datatype class' do
|
98
|
+
nifti_image.expects(:datatype).returns([4])
|
99
|
+
CNifti::HeaderElement::Datatype.expects(:to_datatype).returns(Class)
|
100
|
+
|
101
|
+
expect(subject.datatype).to eq(Class)
|
102
|
+
end
|
103
|
+
end
|
104
|
+
end
|
105
|
+
end
|
@@ -0,0 +1,48 @@
|
|
1
|
+
require 'spec_helper'
|
2
|
+
|
3
|
+
describe CNifti::Header do
|
4
|
+
let!(:nifti_image) { FactoryGirl.build(:nifti_image) }
|
5
|
+
subject { CNifti::Header.new(nifti_image) }
|
6
|
+
|
7
|
+
describe 'intents' do
|
8
|
+
describe 'intent_code' do
|
9
|
+
it 'is expected call the intent_code method from NIfTICLib::NIfTIImage' do
|
10
|
+
nifti_image.expects(:intent_code).returns(4)
|
11
|
+
|
12
|
+
expect(subject.intent_code).to eq(4)
|
13
|
+
end
|
14
|
+
end
|
15
|
+
|
16
|
+
describe 'intent_p1' do
|
17
|
+
it 'is expected call the intent_p1 method from NIfTICLib::NIfTIImage' do
|
18
|
+
nifti_image.expects(:intent_p1).returns(1.4)
|
19
|
+
|
20
|
+
expect(subject.intent_p1).to eq(1.4)
|
21
|
+
end
|
22
|
+
end
|
23
|
+
|
24
|
+
describe 'intent_p2' do
|
25
|
+
it 'is expected call the intent_p2 method from NIfTICLib::NIfTIImage' do
|
26
|
+
nifti_image.expects(:intent_p2).returns(1.4)
|
27
|
+
|
28
|
+
expect(subject.intent_p2).to eq(1.4)
|
29
|
+
end
|
30
|
+
end
|
31
|
+
|
32
|
+
describe 'intent_p3' do
|
33
|
+
it 'is expected call the intent_p3 method from NIfTICLib::NIfTIImage' do
|
34
|
+
nifti_image.expects(:intent_p3).returns(1.4)
|
35
|
+
|
36
|
+
expect(subject.intent_p3).to eq(1.4)
|
37
|
+
end
|
38
|
+
end
|
39
|
+
|
40
|
+
describe 'intent_name' do
|
41
|
+
it 'is expected call the intent_name method from NIfTICLib::NIfTIImage' do
|
42
|
+
nifti_image.expects(:intent_name).returns("intent_name")
|
43
|
+
|
44
|
+
expect(subject.intent_name).to eq("intent_name")
|
45
|
+
end
|
46
|
+
end
|
47
|
+
end
|
48
|
+
end
|
@@ -0,0 +1,96 @@
|
|
1
|
+
require 'spec_helper'
|
2
|
+
|
3
|
+
describe CNifti::Header do
|
4
|
+
let!(:nifti_image) { FactoryGirl.build(:nifti_image) }
|
5
|
+
subject { CNifti::Header.new(nifti_image) }
|
6
|
+
|
7
|
+
describe 'metadata' do
|
8
|
+
describe 'description' do
|
9
|
+
it 'is expected call the descrip method from NIfTICLib::NIfTIImage' do
|
10
|
+
nifti_image.expects(:descrip).returns("description")
|
11
|
+
|
12
|
+
expect(subject.description).to eq("description")
|
13
|
+
end
|
14
|
+
end
|
15
|
+
|
16
|
+
describe 'description=' do
|
17
|
+
it 'is expected call the descrip method from NIfTICLib::NIfTIImage' do
|
18
|
+
nifti_image.expects(:descrip=).with("description").returns("description")
|
19
|
+
|
20
|
+
expect(subject.description = "description").to eq("description")
|
21
|
+
end
|
22
|
+
end
|
23
|
+
|
24
|
+
describe 'aux_file' do
|
25
|
+
it 'is expected call the aux_file method from NIfTICLib::NIfTIImage' do
|
26
|
+
nifti_image.expects(:aux_file).returns("aux_file")
|
27
|
+
|
28
|
+
expect(subject.aux_file).to eq("aux_file")
|
29
|
+
end
|
30
|
+
end
|
31
|
+
|
32
|
+
describe 'aux_file=' do
|
33
|
+
it 'is expected call the aux_file= method from NIfTICLib::NIfTIImage' do
|
34
|
+
nifti_image.expects(:aux_file=).with("aux_file").returns("aux_file")
|
35
|
+
|
36
|
+
expect(subject.aux_file = "aux_file").to eq("aux_file")
|
37
|
+
end
|
38
|
+
end
|
39
|
+
|
40
|
+
describe 'file_name' do
|
41
|
+
it 'is expected call the fname method from NIfTICLib::NIfTIImage' do
|
42
|
+
nifti_image.expects(:fname).returns("fname")
|
43
|
+
|
44
|
+
expect(subject.file_name).to eq("fname")
|
45
|
+
end
|
46
|
+
end
|
47
|
+
|
48
|
+
describe 'file_names=' do
|
49
|
+
it 'is expected call the filenames= method from NIfTICLib::NIfTIImage' do
|
50
|
+
nifti_image.expects(:filenames=).with("file_names").returns("file_names")
|
51
|
+
|
52
|
+
expect(subject.file_name = "file_names").to eq("file_names")
|
53
|
+
end
|
54
|
+
end
|
55
|
+
|
56
|
+
describe 'image_name' do
|
57
|
+
it 'is expected call the iname method from NIfTICLib::NIfTIImage' do
|
58
|
+
nifti_image.expects(:iname).returns("iname")
|
59
|
+
|
60
|
+
expect(subject.image_name).to eq("iname")
|
61
|
+
end
|
62
|
+
end
|
63
|
+
|
64
|
+
describe 'image_name_offset' do
|
65
|
+
it 'is expected call the iname_offset method from NIfTICLib::NIfTIImage' do
|
66
|
+
nifti_image.expects(:iname_offset).returns(4)
|
67
|
+
|
68
|
+
expect(subject.image_name_offset).to eq(4)
|
69
|
+
end
|
70
|
+
end
|
71
|
+
|
72
|
+
describe 'swapsize' do
|
73
|
+
it 'is expected call the swapsize method from NIfTICLib::NIfTIImage' do
|
74
|
+
nifti_image.expects(:swapsize).returns(4)
|
75
|
+
|
76
|
+
expect(subject.swapsize).to eq(4)
|
77
|
+
end
|
78
|
+
end
|
79
|
+
|
80
|
+
describe 'byteorder' do
|
81
|
+
it 'is expected call the byteorder method from NIfTICLib::NIfTIImage' do
|
82
|
+
nifti_image.expects(:byteorder).returns(4)
|
83
|
+
|
84
|
+
expect(subject.byteorder).to eq(4)
|
85
|
+
end
|
86
|
+
end
|
87
|
+
|
88
|
+
describe 'analyze75_orient' do
|
89
|
+
it 'is expected call the analyze75_orient method from NIfTICLib::NIfTIImage' do
|
90
|
+
nifti_image.expects(:analyze75_orient).returns(4)
|
91
|
+
|
92
|
+
expect(subject.analyze75_orient).to eq(4)
|
93
|
+
end
|
94
|
+
end
|
95
|
+
end
|
96
|
+
end
|