c_nifti 0.0.1
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- checksums.yaml +7 -0
- data/.gitignore +37 -0
- data/.rspec +2 -0
- data/.ruby-gemset +1 -0
- data/.ruby-version +1 -0
- data/COPYING +621 -0
- data/COPYING.lesser +166 -0
- data/Gemfile +4 -0
- data/README.md +117 -0
- data/Rakefile +6 -0
- data/c_nifti.gemspec +31 -0
- data/ext/nifticlib/extconf.rb +30 -0
- data/ext/nifticlib/include/nifti_image.h +2 -0
- data/ext/nifticlib/include/nifti_image_converters.h +3 -0
- data/ext/nifticlib/include/nifti_image_dimensions.h +1 -0
- data/ext/nifticlib/include/nifti_image_intents.h +1 -0
- data/ext/nifticlib/include/nifti_image_metadata.h +1 -0
- data/ext/nifticlib/include/nifti_image_quaternions.h +1 -0
- data/ext/nifticlib/include/nifti_image_spacings.h +1 -0
- data/ext/nifticlib/include/nifti_image_timings.h +1 -0
- data/ext/nifticlib/include/nifti_image_transforms.h +1 -0
- data/ext/nifticlib/nifti_image.c +169 -0
- data/ext/nifticlib/nifti_image_converters.c +65 -0
- data/ext/nifticlib/nifti_image_dimensions.c +113 -0
- data/ext/nifticlib/nifti_image_intents.c +45 -0
- data/ext/nifticlib/nifti_image_metadata.c +133 -0
- data/ext/nifticlib/nifti_image_quaternions.c +59 -0
- data/ext/nifticlib/nifti_image_spacings.c +87 -0
- data/ext/nifticlib/nifti_image_timings.c +66 -0
- data/ext/nifticlib/nifti_image_transforms.c +38 -0
- data/ext/nifticlib/nifticlib-2.0.0/CMakeLists.txt +140 -0
- data/ext/nifticlib/nifticlib-2.0.0/CTestConfig.cmake +13 -0
- data/ext/nifticlib/nifticlib-2.0.0/LICENSE +9 -0
- data/ext/nifticlib/nifticlib-2.0.0/Makefile +265 -0
- data/ext/nifticlib/nifticlib-2.0.0/Makefile.cross_mingw32 +94 -0
- data/ext/nifticlib/nifticlib-2.0.0/README +79 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/CMakeLists.txt +7 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/Data/ATestReferenceImageForReadingAndWriting.nii.gz +0 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/Makefile +21 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/README_regress +50 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/@show.diffs +33 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/@test +80 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/CMakeLists.txt +47 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/bricks_test.sh +32 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/comment_test.sh +65 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/dci_test.sh +46 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/dsets_test.sh +61 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/dts_test.sh +75 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/fetch_data_test.sh +45 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/mod_header_test.sh +60 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/cmake_testscripts/newfiles_test.sh +36 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c01.versions +10 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c02.nt.help +5 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c03.hist +5 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c04.disp.anat0.info +7 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c05.mod.hdr +9 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c06.add.ext +22 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c07.cbl.4bricks +8 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c08.dts.19.36.11 +4 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c09.dts4.compare +9 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c10.dci.ts4 +15 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c10a.dci.run.210 +16 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c11.add.comment +8 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c12.check.comments +7 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c13.check.hdrs +5 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c14.make.dsets +21 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c15.new.files +21 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c16.rand.swap +35 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/nifti_regress_test/commands/c17.file.case +34 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/niftilib/CMakeLists.txt +15 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/niftilib/nifti_test.c +690 -0
- data/ext/nifticlib/nifticlib-2.0.0/Testing/niftilib/nifti_test2.c +32 -0
- data/ext/nifticlib/nifticlib-2.0.0/Updates.txt +110 -0
- data/ext/nifticlib/nifticlib-2.0.0/bin/.gitkeep +0 -0
- data/ext/nifticlib/nifticlib-2.0.0/docs/Doxy_nifti.txt +123 -0
- data/ext/nifticlib/nifticlib-2.0.0/docs/Doxyfile.ORIG +746 -0
- data/ext/nifticlib/nifticlib-2.0.0/examples/CMakeLists.txt +15 -0
- data/ext/nifticlib/nifticlib-2.0.0/examples/Makefile +48 -0
- data/ext/nifticlib/nifticlib-2.0.0/examples/clib_01_read_write.c +94 -0
- data/ext/nifticlib/nifticlib-2.0.0/examples/fsl_api_driver.c +142 -0
- data/ext/nifticlib/nifticlib-2.0.0/fsliolib/CMakeLists.txt +32 -0
- data/ext/nifticlib/nifticlib-2.0.0/fsliolib/Makefile +29 -0
- data/ext/nifticlib/nifticlib-2.0.0/fsliolib/fslio.c +2426 -0
- data/ext/nifticlib/nifticlib-2.0.0/fsliolib/fslio.tcl +83 -0
- data/ext/nifticlib/nifticlib-2.0.0/fsliolib/imcp +65 -0
- data/ext/nifticlib/nifticlib-2.0.0/fsliolib/imglob +59 -0
- data/ext/nifticlib/nifticlib-2.0.0/fsliolib/imln +37 -0
- data/ext/nifticlib/nifticlib-2.0.0/fsliolib/immv +64 -0
- data/ext/nifticlib/nifticlib-2.0.0/fsliolib/imrm +29 -0
- data/ext/nifticlib/nifticlib-2.0.0/fsliolib/imtest +53 -0
- data/ext/nifticlib/nifticlib-2.0.0/fsliolib/remove_ext +33 -0
- data/ext/nifticlib/nifticlib-2.0.0/include/.gitkeep +0 -0
- data/ext/nifticlib/nifticlib-2.0.0/nifticdf/CMakeLists.txt +28 -0
- data/ext/nifticlib/nifticlib-2.0.0/nifticdf/Makefile +28 -0
- data/ext/nifticlib/nifticlib-2.0.0/nifticdf/nifticdf.c +11107 -0
- data/ext/nifticlib/nifticlib-2.0.0/niftilib/CMakeLists.txt +33 -0
- data/ext/nifticlib/nifticlib-2.0.0/niftilib/Makefile +31 -0
- data/ext/nifticlib/nifticlib-2.0.0/niftilib/nifti1_io.c +7509 -0
- data/ext/nifticlib/nifticlib-2.0.0/packaging/DevPackage.template +18 -0
- data/ext/nifticlib/nifticlib-2.0.0/packaging/nifticlib.spec +62 -0
- data/ext/nifticlib/nifticlib-2.0.0/real_easy/nifti1_read_write.c +361 -0
- data/ext/nifticlib/nifticlib-2.0.0/utils/CMakeLists.txt +73 -0
- data/ext/nifticlib/nifticlib-2.0.0/utils/Makefile +55 -0
- data/ext/nifticlib/nifticlib-2.0.0/utils/nifti1_test.c +95 -0
- data/ext/nifticlib/nifticlib-2.0.0/utils/nifti_stats.c +95 -0
- data/ext/nifticlib/nifticlib-2.0.0/utils/nifti_tool.c +4193 -0
- data/ext/nifticlib/nifticlib-2.0.0/utils/nifti_tool.h +163 -0
- data/ext/nifticlib/nifticlib-2.0.0/znzlib/CMakeLists.txt +31 -0
- data/ext/nifticlib/nifticlib-2.0.0/znzlib/Makefile +33 -0
- data/ext/nifticlib/nifticlib-2.0.0/znzlib/znzlib.c +322 -0
- data/ext/nifticlib/nifticlib.c +107 -0
- data/ext/nifticlib/patches/nifticlib_fpic.patch +13 -0
- data/features/read_modify_write.feature +11 -0
- data/features/step_definitions/nifti_image_steps.rb +16 -0
- data/features/support/env.rb +14 -0
- data/features/support/fixtures/sample.nii.gz +0 -0
- data/lib/c_nifti.rb +9 -0
- data/lib/c_nifti/data.rb +70 -0
- data/lib/c_nifti/header.rb +16 -0
- data/lib/c_nifti/header_element.rb +13 -0
- data/lib/c_nifti/header_element/datatype.rb +49 -0
- data/lib/c_nifti/header_element/datatype/base.rb +9 -0
- data/lib/c_nifti/header_element/datatype/binary.rb +11 -0
- data/lib/c_nifti/header_element/datatype/double.rb +11 -0
- data/lib/c_nifti/header_element/datatype/float.rb +11 -0
- data/lib/c_nifti/header_element/datatype/long_double.rb +11 -0
- data/lib/c_nifti/header_element/datatype/long_long.rb +11 -0
- data/lib/c_nifti/header_element/datatype/signed_char.rb +11 -0
- data/lib/c_nifti/header_element/datatype/signed_int.rb +11 -0
- data/lib/c_nifti/header_element/datatype/signed_short.rb +11 -0
- data/lib/c_nifti/header_element/datatype/unsigned_char.rb +11 -0
- data/lib/c_nifti/header_element/datatype/unsigned_int.rb +11 -0
- data/lib/c_nifti/header_element/datatype/unsigned_long_long.rb +11 -0
- data/lib/c_nifti/header_element/datatype/unsigned_short.rb +11 -0
- data/lib/c_nifti/header_element/dimensions.rb +53 -0
- data/lib/c_nifti/header_element/intents.rb +25 -0
- data/lib/c_nifti/header_element/metadata.rb +49 -0
- data/lib/c_nifti/header_element/miscellaneous.rb +25 -0
- data/lib/c_nifti/header_element/quaternions.rb +33 -0
- data/lib/c_nifti/header_element/spacings.rb +45 -0
- data/lib/c_nifti/header_element/timings.rb +37 -0
- data/lib/c_nifti/header_element/transforms.rb +21 -0
- data/lib/c_nifti/image.rb +31 -0
- data/lib/c_nifti/version.rb +3 -0
- data/lib/nifticlib.rb +1 -0
- data/spec/data_spec.rb +112 -0
- data/spec/factories/nifti_images.rb +9 -0
- data/spec/header_element/datatype/base_spec.rb +9 -0
- data/spec/header_element/datatype/binary_spec.rb +9 -0
- data/spec/header_element/datatype/double_spec.rb +9 -0
- data/spec/header_element/datatype/float_spec.rb +9 -0
- data/spec/header_element/datatype/long_double_spec.rb +9 -0
- data/spec/header_element/datatype/long_long_spec.rb +9 -0
- data/spec/header_element/datatype/signed_char_spec.rb +9 -0
- data/spec/header_element/datatype/signed_int_spec.rb +9 -0
- data/spec/header_element/datatype/signed_short_spec.rb +9 -0
- data/spec/header_element/datatype/unsigned_char_spec.rb +9 -0
- data/spec/header_element/datatype/unsigned_int_spec.rb +9 -0
- data/spec/header_element/datatype/unsigned_long_long.rb +9 -0
- data/spec/header_element/datatype/unsigned_short_spec.rb +9 -0
- data/spec/header_element/datatype_spec.rb +109 -0
- data/spec/header_element/dimensions_spec.rb +105 -0
- data/spec/header_element/intents_spec.rb +48 -0
- data/spec/header_element/metadata_spec.rb +96 -0
- data/spec/header_element/miscellaneous_spec.rb +48 -0
- data/spec/header_element/quaternions_spec.rb +64 -0
- data/spec/header_element/spacings_spec.rb +88 -0
- data/spec/header_element/timings_spec.rb +72 -0
- data/spec/header_element/transforms_spec.rb +64 -0
- data/spec/image_spec.rb +39 -0
- data/spec/spec_helper.rb +85 -0
- metadata +363 -0
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module CNifti
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module HeaderElement
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module Dimensions
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def ndim
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@nifti_image.ndim
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end
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def nvox
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@nifti_image.nvox
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end
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def nx
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@nifti_image.nx
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end
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def ny
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@nifti_image.ny
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end
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def nz
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@nifti_image.nz
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end
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def nt
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@nifti_image.nt
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end
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def nu
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@nifti_image.nu
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end
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def nv
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@nifti_image.nv
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end
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def nw
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@nifti_image.nw
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end
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def dim
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@nifti_image.dim
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end
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def nbyper
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@nifti_image.nbyper
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end
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def datatype
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CNifti::HeaderElement::Datatype.to_datatype(@nifti_image.datatype)
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end
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end
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end
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end
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module CNifti
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module HeaderElement
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module Intents
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def intent_code
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@nifti_image.intent_code
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end
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def intent_p1
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@nifti_image.intent_p1
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end
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def intent_p2
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@nifti_image.intent_p2
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end
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def intent_p3
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@nifti_image.intent_p3
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end
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def intent_name
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@nifti_image.intent_name
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end
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end
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end
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end
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module CNifti
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module HeaderElement
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module Metadata
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def description
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@nifti_image.descrip
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end
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def description=(value)
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@nifti_image.descrip = value
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end
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def aux_file
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@nifti_image.aux_file
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end
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def aux_file=(value)
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@nifti_image.aux_file = value
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end
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def file_name
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@nifti_image.fname
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end
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def file_name=(value)
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@nifti_image.filenames = value # This actually sets iname and iname_offset as well
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end
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def image_name
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@nifti_image.iname
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end
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def image_name_offset
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@nifti_image.iname_offset
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end
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def swapsize
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@nifti_image.swapsize
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end
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def byteorder
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@nifti_image.byteorder
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end
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def analyze75_orient
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@nifti_image.analyze75_orient
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end
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end
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end
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end
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module CNifti
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module HeaderElement
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module Miscellaneous
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def scl_slope
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@nifti_image.scl_slope
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end
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def scl_inter
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@nifti_image.scl_inter
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end
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def cal_min
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@nifti_image.cal_min
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end
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def cal_max
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@nifti_image.cal_max
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end
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def type
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@nifti_image.nifti_type
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end
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end
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end
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end
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module CNifti
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module HeaderElement
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module Quaternions
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def quatern_b
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@nifti_image.quatern_b
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end
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def quatern_c
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@nifti_image.quatern_c
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+
end
|
11
|
+
|
12
|
+
def quatern_d
|
13
|
+
@nifti_image.quatern_d
|
14
|
+
end
|
15
|
+
|
16
|
+
def qoffset_x
|
17
|
+
@nifti_image.qoffset_x
|
18
|
+
end
|
19
|
+
|
20
|
+
def qoffset_y
|
21
|
+
@nifti_image.qoffset_y
|
22
|
+
end
|
23
|
+
|
24
|
+
def qoffset_z
|
25
|
+
@nifti_image.qoffset_z
|
26
|
+
end
|
27
|
+
|
28
|
+
def qfac
|
29
|
+
@nifti_image.qfac
|
30
|
+
end
|
31
|
+
end
|
32
|
+
end
|
33
|
+
end
|
@@ -0,0 +1,45 @@
|
|
1
|
+
module CNifti
|
2
|
+
module HeaderElement
|
3
|
+
module Spacings
|
4
|
+
def dx
|
5
|
+
@nifti_image.dx
|
6
|
+
end
|
7
|
+
|
8
|
+
def dy
|
9
|
+
@nifti_image.dy
|
10
|
+
end
|
11
|
+
|
12
|
+
def dz
|
13
|
+
@nifti_image.dz
|
14
|
+
end
|
15
|
+
|
16
|
+
def dt
|
17
|
+
@nifti_image.dt
|
18
|
+
end
|
19
|
+
|
20
|
+
def du
|
21
|
+
@nifti_image.du
|
22
|
+
end
|
23
|
+
|
24
|
+
def dv
|
25
|
+
@nifti_image.dv
|
26
|
+
end
|
27
|
+
|
28
|
+
def dw
|
29
|
+
@nifti_image.dw
|
30
|
+
end
|
31
|
+
|
32
|
+
def pixel_dimensions
|
33
|
+
@nifti_image.pixdim
|
34
|
+
end
|
35
|
+
|
36
|
+
def qform_code
|
37
|
+
@nifti_image.qform_code
|
38
|
+
end
|
39
|
+
|
40
|
+
def sform_code
|
41
|
+
@nifti_image.sform_code
|
42
|
+
end
|
43
|
+
end
|
44
|
+
end
|
45
|
+
end
|
@@ -0,0 +1,37 @@
|
|
1
|
+
module CNifti
|
2
|
+
module HeaderElement
|
3
|
+
module Timings
|
4
|
+
def freq_dim
|
5
|
+
@nifti_image.freq_dim
|
6
|
+
end
|
7
|
+
|
8
|
+
def phase_dim
|
9
|
+
@nifti_image.phase_dim
|
10
|
+
end
|
11
|
+
|
12
|
+
def slice_dim
|
13
|
+
@nifti_image.slice_dim
|
14
|
+
end
|
15
|
+
|
16
|
+
def slice_code
|
17
|
+
@nifti_image.slice_code
|
18
|
+
end
|
19
|
+
|
20
|
+
def slice_start
|
21
|
+
@nifti_image.slice_start
|
22
|
+
end
|
23
|
+
|
24
|
+
def slice_end
|
25
|
+
@nifti_image.slice_end
|
26
|
+
end
|
27
|
+
|
28
|
+
def slice_duration
|
29
|
+
@nifti_image.slice_duration
|
30
|
+
end
|
31
|
+
|
32
|
+
def toffset
|
33
|
+
@nifti_image.toffset
|
34
|
+
end
|
35
|
+
end
|
36
|
+
end
|
37
|
+
end
|
@@ -0,0 +1,21 @@
|
|
1
|
+
module CNifti
|
2
|
+
module HeaderElement
|
3
|
+
module Transforms
|
4
|
+
def qto_xyz
|
5
|
+
@nifti_image.qto_xyz
|
6
|
+
end
|
7
|
+
|
8
|
+
def qto_ijk
|
9
|
+
@nifti_image.qto_ijk
|
10
|
+
end
|
11
|
+
|
12
|
+
def sto_xyz
|
13
|
+
@nifti_image.sto_xyz
|
14
|
+
end
|
15
|
+
|
16
|
+
def sto_ijk
|
17
|
+
@nifti_image.sto_ijk
|
18
|
+
end
|
19
|
+
end
|
20
|
+
end
|
21
|
+
end
|
@@ -0,0 +1,31 @@
|
|
1
|
+
require 'nifticlib'
|
2
|
+
|
3
|
+
module CNifti
|
4
|
+
class Image
|
5
|
+
attr_reader :header, :data
|
6
|
+
|
7
|
+
def initialize(attributes={dimensions: [1, 1], datatype: HeaderElement::Datatype::SignedInt})
|
8
|
+
@nifti_image = NIfTICLib::NIfTIImage.new(([attributes[:dimensions].count] + attributes[:dimensions]), # The first element is the dimensions count which is concatenated to the actual dimensions
|
9
|
+
attributes[:datatype].to_i, # Integer datatype
|
10
|
+
1) # Always initialize the data
|
11
|
+
|
12
|
+
@header = Header.new(@nifti_image)
|
13
|
+
@data = Data.new(@nifti_image)
|
14
|
+
end
|
15
|
+
|
16
|
+
def open(path)
|
17
|
+
@nifti_image = NIfTICLib.read(path)
|
18
|
+
|
19
|
+
@header = Header.new(@nifti_image)
|
20
|
+
@data = Data.new(@nifti_image)
|
21
|
+
|
22
|
+
self
|
23
|
+
end
|
24
|
+
|
25
|
+
def save_as(path)
|
26
|
+
NIfTICLib.write(@nifti_image, path)
|
27
|
+
|
28
|
+
return true
|
29
|
+
end
|
30
|
+
end
|
31
|
+
end
|
data/lib/nifticlib.rb
ADDED
@@ -0,0 +1 @@
|
|
1
|
+
require 'nifticlib/nifticlib'
|
data/spec/data_spec.rb
ADDED
@@ -0,0 +1,112 @@
|
|
1
|
+
require 'spec_helper'
|
2
|
+
|
3
|
+
describe CNifti::Data do
|
4
|
+
let!(:nifti_image) { FactoryGirl.build(:nifti_image) }
|
5
|
+
subject { CNifti::Data.new(nifti_image) }
|
6
|
+
|
7
|
+
describe 'raw' do
|
8
|
+
it 'is expected call the data method from NIfTICLib::NIfTIImage' do
|
9
|
+
nifti_image.expects(:data).returns([4])
|
10
|
+
|
11
|
+
expect(subject.raw).to eq([4])
|
12
|
+
end
|
13
|
+
end
|
14
|
+
|
15
|
+
describe 'get_raw' do
|
16
|
+
it 'is expected call the get_data method from NIfTICLib::NIfTIImage' do
|
17
|
+
nifti_image.expects(:get_data).with(0).returns(4)
|
18
|
+
|
19
|
+
expect(subject.get_raw(0)).to eq(4)
|
20
|
+
end
|
21
|
+
end
|
22
|
+
|
23
|
+
describe 'set_raw' do
|
24
|
+
it 'is expected call the set_data method from NIfTICLib::NIfTIImage' do
|
25
|
+
nifti_image.expects(:set_data).with(0, 4).returns(4)
|
26
|
+
|
27
|
+
expect(subject.set_raw(0,4)).to eq(4)
|
28
|
+
end
|
29
|
+
end
|
30
|
+
|
31
|
+
describe 'shape' do
|
32
|
+
let!(:dim) { [2, 3, 3] }
|
33
|
+
|
34
|
+
before :each do
|
35
|
+
nifti_image.stubs(:dim).returns(dim)
|
36
|
+
end
|
37
|
+
|
38
|
+
it 'is expected call the set_data method from NIfTICLib::NIfTIImage' do
|
39
|
+
expect(subject.shape).to eq(dim[1..-1])
|
40
|
+
end
|
41
|
+
end
|
42
|
+
|
43
|
+
describe '[]' do
|
44
|
+
let!(:shape) { [3, 3] }
|
45
|
+
|
46
|
+
before :each do
|
47
|
+
nifti_image.stubs(:shape).returns(shape)
|
48
|
+
end
|
49
|
+
|
50
|
+
context 'with an index over bounds' do
|
51
|
+
let(:index) {3}
|
52
|
+
|
53
|
+
it 'is expected to raise a IndexError' do
|
54
|
+
expect{ subject[index] }.to raise_error(IndexError)
|
55
|
+
end
|
56
|
+
end
|
57
|
+
|
58
|
+
context 'with valid index' do
|
59
|
+
context 'with the last dimension' do
|
60
|
+
context 'with a Range' do
|
61
|
+
let(:index) { 0..1 }
|
62
|
+
|
63
|
+
it 'is expected to return a array' do
|
64
|
+
expect(subject[0][index]).to be_a(Array)
|
65
|
+
end
|
66
|
+
end
|
67
|
+
|
68
|
+
context 'with a Fixnum' do
|
69
|
+
let(:index) {2}
|
70
|
+
|
71
|
+
it 'is expected to return a Value' do
|
72
|
+
expect(subject[0][index]).to eq(0)
|
73
|
+
end
|
74
|
+
end
|
75
|
+
end
|
76
|
+
|
77
|
+
context 'with a intermediary dimension' do
|
78
|
+
let(:index) {2}
|
79
|
+
|
80
|
+
it 'is expected to return a Data instance' do
|
81
|
+
expect(subject[index]).to be_a(CNifti::Data)
|
82
|
+
end
|
83
|
+
end
|
84
|
+
end
|
85
|
+
end
|
86
|
+
|
87
|
+
describe '[]=' do
|
88
|
+
let!(:shape) { [3, 3] }
|
89
|
+
|
90
|
+
before :each do
|
91
|
+
nifti_image.stubs(:shape).returns(shape)
|
92
|
+
end
|
93
|
+
|
94
|
+
context 'with the last dimension' do
|
95
|
+
context 'with a Fixnum' do
|
96
|
+
let(:index) {2}
|
97
|
+
|
98
|
+
it 'is expected to return a Value' do
|
99
|
+
expect(subject[0][index] = 2).to eq(2)
|
100
|
+
end
|
101
|
+
end
|
102
|
+
end
|
103
|
+
|
104
|
+
context 'with a intermediary dimension' do
|
105
|
+
let(:index) {2}
|
106
|
+
|
107
|
+
it 'is expected to raise a IndexError' do
|
108
|
+
expect{ subject[index] = 2 }.to raise_error(IndexError)
|
109
|
+
end
|
110
|
+
end
|
111
|
+
end
|
112
|
+
end
|