briard 2.4.2 → 2.6.0

data/spec/writers/jats_writer_spec.rb

@@ -3,192 +3,208 @@
 require 'spec_helper'
 
 describe Briard::Metadata, vcr: true do
-  context "write metadata as jats xml" do
-    it "with data citation" do
-      input = "10.7554/eLife.01567"
-      subject = Briard::Metadata.new(input: input, from: "crossref")
-      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
-      expect(jats.dig("publication_type")).to eq("journal")
-      expect(jats.dig("article_title")).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
-      expect(jats.dig("source")).to eq("eLife")
-      expect(jats.dig("person_group", "name").length).to eq(5)
-      expect(jats.dig("person_group", "name").first).to eq("surname"=>"Sankar", "given_names"=>"Martial")
-      expect(jats.dig("year")).to eq("iso_8601_date"=>"2014-02-11", "__content__"=>"2014")
-      expect(jats.dig("month")).to eq("02")
-      expect(jats.dig("day")).to eq("11")
+  context 'write metadata as jats xml' do
+    it 'with data citation' do
+      input = '10.7554/eLife.01567'
+      subject = described_class.new(input: input, from: 'crossref')
+      jats = Maremma.from_xml(subject.jats).fetch('element_citation', {})
+      expect(jats['publication_type']).to eq('journal')
+      expect(jats['article_title']).to eq('Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth')
+      expect(jats['source']).to eq('eLife')
+      expect(jats.dig('person_group', 'name').length).to eq(5)
+      expect(jats.dig('person_group',
+                      'name').first).to eq('surname' => 'Sankar', 'given_names' => 'Martial')
+      expect(jats['year']).to eq('iso_8601_date' => '2014-02-11', '__content__' => '2014')
+      expect(jats['month']).to eq('02')
+      expect(jats['day']).to eq('11')
     end
 
-    it "with ORCID ID" do
-      input = "https://doi.org/10.1155/2012/291294"
-      subject = Briard::Metadata.new(input: input, from: "crossref")
-      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
-      expect(jats.dig("publication_type")).to eq("journal")
-      expect(jats.dig("article_title")).to eq("Delineating a Retesting Zone Using Receiver Operating Characteristic Analysis on Serial QuantiFERON Tuberculosis Test Results in US Healthcare Workers")
-      expect(jats.dig("source")).to eq("Pulmonary Medicine")
-      expect(jats.dig("person_group", "name").length).to eq(7)
-      expect(jats.dig("person_group", "name").first).to eq("surname"=>"Thanassi", "given_names"=>"Wendy")
-      expect(jats.dig("year")).to eq("iso_8601_date"=>"2012", "__content__"=>"2012")
+    it 'with ORCID ID' do
+      input = 'https://doi.org/10.1155/2012/291294'
+      subject = described_class.new(input: input, from: 'crossref')
+      jats = Maremma.from_xml(subject.jats).fetch('element_citation', {})
+      expect(jats['publication_type']).to eq('journal')
+      expect(jats['article_title']).to eq('Delineating a Retesting Zone Using Receiver Operating Characteristic Analysis on Serial QuantiFERON Tuberculosis Test Results in US Healthcare Workers')
+      expect(jats['source']).to eq('Pulmonary Medicine')
+      expect(jats.dig('person_group', 'name').length).to eq(7)
+      expect(jats.dig('person_group',
+                      'name').first).to eq('surname' => 'Thanassi', 'given_names' => 'Wendy')
+      expect(jats['year']).to eq('iso_8601_date' => '2012', '__content__' => '2012')
     end
 
-    it "with editor" do
-      input = "https://doi.org/10.1371/journal.pone.0000030"
-      subject = Briard::Metadata.new(input: input, from: "crossref")
-      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
-      expect(jats.dig("publication_type")).to eq("journal")
-      expect(jats.dig("article_title")).to eq("Triose Phosphate Isomerase Deficiency Is Caused by Altered Dimerization???Not Catalytic Inactivity???of the Mutant Enzymes")
-      expect(jats.dig("source")).to eq("PLoS ONE")
-      expect(jats.dig("person_group", 0, "name").length).to eq(5)
-      expect(jats.dig("person_group", 0, "name").first).to eq("surname"=>"Ralser", "given_names"=>"Markus")
-      expect(jats.dig("person_group", 1, "name")).to eq("surname"=>"Janbon", "given_names"=>"Guilhem")
-      expect(jats.dig("year")).to eq("iso_8601_date"=>"2006-12-20", "__content__"=>"2006")
-      expect(jats.dig("month")).to eq("12")
-      expect(jats.dig("day")).to eq("20")
-      expect(jats.dig("fpage")).to eq("e30")
-      expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.1371/journal.pone.0000030")
+    it 'with editor' do
+      input = 'https://doi.org/10.1371/journal.pone.0000030'
+      subject = described_class.new(input: input, from: 'crossref')
+      jats = Maremma.from_xml(subject.jats).fetch('element_citation', {})
+      expect(jats['publication_type']).to eq('journal')
+      expect(jats['article_title']).to eq('Triose Phosphate Isomerase Deficiency Is Caused by Altered Dimerization???Not Catalytic Inactivity???of the Mutant Enzymes')
+      expect(jats['source']).to eq('PLoS ONE')
+      expect(jats.dig('person_group', 0, 'name').length).to eq(5)
+      expect(jats.dig('person_group', 0,
+                      'name').first).to eq('surname' => 'Ralser', 'given_names' => 'Markus')
+      expect(jats.dig('person_group', 1,
+                      'name')).to eq('surname' => 'Janbon', 'given_names' => 'Guilhem')
+      expect(jats['year']).to eq('iso_8601_date' => '2006-12-20', '__content__' => '2006')
+      expect(jats['month']).to eq('12')
+      expect(jats['day']).to eq('20')
+      expect(jats['fpage']).to eq('e30')
+      expect(jats['pub_id']).to eq('pub_id_type' => 'doi',
+                                   '__content__' => '10.1371/journal.pone.0000030')
     end
 
-    it "book chapter" do
-      input = "https://doi.org/10.5005/jp/books/12414_3"
-      subject = Briard::Metadata.new(input: input, from: "crossref")
-      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
-      expect(jats.dig("publication_type")).to eq("chapter")
-      expect(jats.dig("chapter_title")).to eq("Physical Examinations")
-      expect(jats.dig("source")).to eq("Jaypee Brothers Medical Publishing")
-      expect(jats.dig("person_group", "name")).to eq("surname"=>"Saha", "given_names"=>"Ashis")
-      expect(jats.dig("year")).to eq("iso_8601_date"=>"2015", "__content__"=>"2015")
-      expect(jats.dig("fpage")).to eq("27")
-      expect(jats.dig("lpage")).to eq("27")
-      expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.5005/jp/books/12414_3")
+    it 'book chapter' do
+      input = 'https://doi.org/10.5005/jp/books/12414_3'
+      subject = described_class.new(input: input, from: 'crossref')
+      jats = Maremma.from_xml(subject.jats).fetch('element_citation', {})
+      expect(jats['publication_type']).to eq('chapter')
+      expect(jats['chapter_title']).to eq('Physical Examinations')
+      expect(jats['source']).to eq('Jaypee Brothers Medical Publishing')
+      expect(jats.dig('person_group', 'name')).to eq('surname' => 'Saha', 'given_names' => 'Ashis')
+      expect(jats['year']).to eq('iso_8601_date' => '2015', '__content__' => '2015')
+      expect(jats['fpage']).to eq('27')
+      expect(jats['lpage']).to eq('27')
+      expect(jats['pub_id']).to eq('pub_id_type' => 'doi',
+                                   '__content__' => '10.5005/jp/books/12414_3')
     end
 
-    it "Crossref DOI" do
-      input = fixture_path + "crossref.bib"
-      subject = Briard::Metadata.new(input: input, from: "bibtex")
-      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
-      expect(jats.dig("publication_type")).to eq("journal")
-      expect(jats.dig("article_title")).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
-      expect(jats.dig("source")).to eq("eLife")
-      expect(jats.dig("person_group", "name").length).to eq(5)
-      expect(jats.dig("person_group", "name").first).to eq("surname"=>"Sankar", "given_names"=>"Martial")
-      expect(jats.dig("year")).to eq("iso_8601_date"=>"2014", "__content__"=>"2014")
-      expect(jats.dig("month")).to be_nil
-      expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.7554/elife.01567")
+    it 'Crossref DOI' do
+      input = "#{fixture_path}crossref.bib"
+      subject = described_class.new(input: input, from: 'bibtex')
+      jats = Maremma.from_xml(subject.jats).fetch('element_citation', {})
+      expect(jats['publication_type']).to eq('journal')
+      expect(jats['article_title']).to eq('Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth')
+      expect(jats['source']).to eq('eLife')
+      expect(jats.dig('person_group', 'name').length).to eq(5)
+      expect(jats.dig('person_group',
+                      'name').first).to eq('surname' => 'Sankar', 'given_names' => 'Martial')
+      expect(jats['year']).to eq('iso_8601_date' => '2014', '__content__' => '2014')
+      expect(jats['month'].nil?).to be(true)
+      expect(jats['pub_id']).to eq('pub_id_type' => 'doi', '__content__' => '10.7554/elife.01567')
     end
 
-    it "BlogPosting Citeproc JSON" do
-      input = fixture_path + "citeproc.json"
-      subject = Briard::Metadata.new(input: input, from: "citeproc")
-      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
-      expect(jats.dig("publication_type")).to be_nil
-      expect(jats.dig("source")).to eq("Eating your own Dog Food")
-      expect(jats.dig("publisher_name")).to eq("DataCite")
-      expect(jats.dig("person_group", "name")).to eq("surname"=>"Fenner", "given_names"=>"Martin")
-      expect(jats.dig("year")).to eq("iso_8601_date"=>"2016-12-20", "__content__"=>"2016")
-      expect(jats.dig("month")).to eq("12")
-      expect(jats.dig("day")).to eq("20")
-      expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.5438/4k3m-nyvg")
+    it 'BlogPosting Citeproc JSON' do
+      input = "#{fixture_path}citeproc.json"
+      subject = described_class.new(input: input, from: 'citeproc')
+      jats = Maremma.from_xml(subject.jats).fetch('element_citation', {})
+      expect(jats['publication_type'].nil?).to be(true)
+      expect(jats['source']).to eq('Eating your own Dog Food')
+      expect(jats['publisher_name']).to eq('DataCite')
+      expect(jats.dig('person_group',
+                      'name')).to eq('surname' => 'Fenner', 'given_names' => 'Martin')
+      expect(jats['year']).to eq('iso_8601_date' => '2016-12-20', '__content__' => '2016')
+      expect(jats['month']).to eq('12')
+      expect(jats['day']).to eq('20')
+      expect(jats['pub_id']).to eq('pub_id_type' => 'doi', '__content__' => '10.5438/4k3m-nyvg')
     end
 
-    it "rdataone" do
-      input = fixture_path + 'codemeta.json'
-      subject = Briard::Metadata.new(input: input, from: "codemeta")
-      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
-      expect(jats.dig("publication_type")).to eq("software")
-      expect(jats.dig("source")).to eq("R Interface to the DataONE REST API")
-      expect(jats.dig("publisher_name")).to eq("https://cran.r-project.org")
-      expect(jats.dig("person_group", "name").length).to eq(3)
-      expect(jats.dig("person_group", "name").first).to eq("surname"=>"Jones", "given_names"=>"Matt")
-      expect(jats.dig("year")).to eq("iso_8601_date"=>"2016-05-27", "__content__"=>"2016")
-      expect(jats.dig("month")).to eq("05")
-      expect(jats.dig("day")).to eq("27")
-      expect(jats.dig("version")).to eq("2.0.0")
-      expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.5063/f1m61h5x")
+    it 'rdataone' do
+      input = "#{fixture_path}codemeta.json"
+      subject = described_class.new(input: input, from: 'codemeta')
+      jats = Maremma.from_xml(subject.jats).fetch('element_citation', {})
+      expect(jats['publication_type']).to eq('software')
+      expect(jats['source']).to eq('R Interface to the DataONE REST API')
+      expect(jats['publisher_name']).to eq('https://cran.r-project.org')
+      expect(jats.dig('person_group', 'name').length).to eq(3)
+      expect(jats.dig('person_group',
+                      'name').first).to eq('surname' => 'Jones', 'given_names' => 'Matt')
+      expect(jats['year']).to eq('iso_8601_date' => '2016-05-27', '__content__' => '2016')
+      expect(jats['month']).to eq('05')
+      expect(jats['day']).to eq('27')
+      expect(jats['version']).to eq('2.0.0')
+      expect(jats['pub_id']).to eq('pub_id_type' => 'doi', '__content__' => '10.5063/f1m61h5x')
     end
 
-    it "maremma" do
-      input = "https://github.com/datacite/maremma"
-      subject = Briard::Metadata.new(input: input, from: "codemeta")
-      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
-      expect(jats.dig("publication_type")).to eq("software")
-      expect(jats.dig("source")).to eq("Maremma: a Ruby library for simplified network calls")
-      expect(jats.dig("publisher_name")).to eq("DataCite")
-      expect(jats.dig("person_group", "name")).to eq("surname"=>"Fenner", "given_names"=>"Martin")
-      expect(jats.dig("year")).to eq("iso_8601_date"=>"2017-02-24", "__content__"=>"2017")
-      expect(jats.dig("month")).to eq("02")
-      expect(jats.dig("day")).to eq("24")
-      expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.5438/qeg0-3gm3")
+    it 'maremma' do
+      input = 'https://github.com/datacite/maremma'
+      subject = described_class.new(input: input, from: 'codemeta')
+      jats = Maremma.from_xml(subject.jats).fetch('element_citation', {})
+      expect(jats['publication_type']).to eq('software')
+      expect(jats['source']).to eq('Maremma: a Ruby library for simplified network calls')
+      expect(jats['publisher_name']).to eq('DataCite')
+      expect(jats.dig('person_group',
+                      'name')).to eq('surname' => 'Fenner', 'given_names' => 'Martin')
+      expect(jats['year']).to eq('iso_8601_date' => '2017-02-24', '__content__' => '2017')
+      expect(jats['month']).to eq('02')
+      expect(jats['day']).to eq('24')
+      expect(jats['pub_id']).to eq('pub_id_type' => 'doi', '__content__' => '10.5438/qeg0-3gm3')
     end
 
-    it "Text pass-thru" do
-      input = "https://doi.org/10.23640/07243.5153971"
-      subject = Briard::Metadata.new(input: input, from: "datacite")
-      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
-      expect(jats.dig("publication_type")).to eq("journal")
-      expect(jats.dig("article_title")).to eq("Recommendation of: ORCID Works Metadata Working Group")
-      expect(jats.dig("source")).to eq("Figshare")
-      expect(jats.dig("person_group", "name").length).to eq(20)
-      expect(jats.dig("person_group", "name").first).to eq("surname"=>"Paglione", "given_names"=>"Laura")
-      expect(jats.dig("year")).to eq("iso_8601_date"=>"2017", "__content__"=>"2017")
-      expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.23640/07243.5153971")
+    it 'Text pass-thru' do
+      input = 'https://doi.org/10.23640/07243.5153971'
+      subject = described_class.new(input: input, from: 'datacite')
+      jats = Maremma.from_xml(subject.jats).fetch('element_citation', {})
+      expect(jats['publication_type']).to eq('journal')
+      expect(jats['article_title']).to eq('Recommendation of: ORCID Works Metadata Working Group')
+      expect(jats['source']).to eq('Figshare')
+      expect(jats.dig('person_group', 'name').length).to eq(20)
+      expect(jats.dig('person_group',
+                      'name').first).to eq('surname' => 'Paglione', 'given_names' => 'Laura')
+      expect(jats['year']).to eq('iso_8601_date' => '2017', '__content__' => '2017')
+      expect(jats['pub_id']).to eq('pub_id_type' => 'doi',
+                                   '__content__' => '10.23640/07243.5153971')
     end
 
-    it "Dataset in schema 4.0" do
-      input = "https://doi.org/10.5061/DRYAD.8515"
-      subject = Briard::Metadata.new(input: input, from: "datacite", regenerate: true)
-      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
-      expect(jats.dig("publication_type")).to eq("data")
-      expect(jats.dig("data_title")).to eq("Data from: A new malaria agent in African hominids.")
-      expect(jats.dig("source")).to eq("Dryad")
-      expect(jats.dig("person_group", "name").length).to eq(8)
-      expect(jats.dig("person_group", "name").first).to eq("surname"=>"Ollomo", "given_names"=>"Benjamin")
-      expect(jats.dig("year")).to eq("iso_8601_date"=>"2011", "__content__"=>"2011")
-      expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.5061/dryad.8515")
+    it 'Dataset in schema 4.0' do
+      input = 'https://doi.org/10.5061/DRYAD.8515'
+      subject = described_class.new(input: input, from: 'datacite', regenerate: true)
+      jats = Maremma.from_xml(subject.jats).fetch('element_citation', {})
+      expect(jats['publication_type']).to eq('data')
+      expect(jats['data_title']).to eq('Data from: A new malaria agent in African hominids.')
+      expect(jats['source']).to eq('Dryad')
+      expect(jats.dig('person_group', 'name').length).to eq(8)
+      expect(jats.dig('person_group',
+                      'name').first).to eq('surname' => 'Ollomo', 'given_names' => 'Benjamin')
+      expect(jats['year']).to eq('iso_8601_date' => '2011', '__content__' => '2011')
+      expect(jats['pub_id']).to eq('pub_id_type' => 'doi', '__content__' => '10.5061/dryad.8515')
     end
 
-    it "from schema_org" do
-      input = "https://blog.front-matter.io/posts/eating-your-own-dog-food/"
-      subject = Briard::Metadata.new(input: input, from: "schema_org")
-      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
-      expect(jats.dig("publication_type")).to eq("journal")
-      expect(jats.dig("article_title")).to eq("Eating your own Dog Food")
-      expect(jats.dig("source")).to eq("Front Matter")
-      expect(jats.dig("publisher_name")).to eq("Front Matter")
-      expect(jats.dig("person_group", "name")).to eq("surname"=>"Fenner", "given_names"=>"Martin")
-      expect(jats.dig("year")).to eq("iso_8601_date"=>"2016-12-20T00:00:00Z", "__content__"=>"2016")
-      expect(jats.dig("month")).to eq("12")
-      expect(jats.dig("day")).to eq("20")
-      expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.53731/r79vxn1-97aq74v-ag58n")
+    it 'from schema_org' do
+      input = 'https://blog.front-matter.io/posts/eating-your-own-dog-food/'
+      subject = described_class.new(input: input, from: 'schema_org')
+      jats = Maremma.from_xml(subject.jats).fetch('element_citation', {})
+      expect(jats['publication_type']).to eq('journal')
+      expect(jats['article_title']).to eq('Eating your own Dog Food')
+      expect(jats['source']).to eq('Front Matter')
+      expect(jats['publisher_name']).to eq('Front Matter')
+      expect(jats.dig('person_group',
+                      'name')).to eq('surname' => 'Fenner', 'given_names' => 'Martin')
+      expect(jats['year']).to eq('iso_8601_date' => '2016-12-20T00:00:00Z', '__content__' => '2016')
+      expect(jats['month']).to eq('12')
+      expect(jats['day']).to eq('20')
+      expect(jats['pub_id']).to eq('pub_id_type' => 'doi',
+                                   '__content__' => '10.53731/r79vxn1-97aq74v-ag58n')
     end
 
-    it "interactive resource without dates" do
-      input = "https://doi.org/10.34747/g6yb-3412"
-      subject = Briard::Metadata.new(input: input, from: "datacite")
-      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
-      expect(jats.dig("publication_type")).to be_nil
-      expect(jats.dig("source")).to eq("Exploring the \"Many analysts, one dataset\" project from COS")
-      expect(jats.dig("publisher_name")).to eq("Gigantum, Inc.")
-      expect(jats.dig("person_group", "name")).to eq("given_names"=>"Dav", "surname"=>"Clark")
-      expect(jats.dig("year")).to eq("__content__"=>"2019", "iso_8601_date"=>"2019")
-      expect(jats.dig("month")).to be_nil
-      expect(jats.dig("day")).to be_nil
-      expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.34747/g6yb-3412")
+    it 'interactive resource without dates' do
+      input = 'https://doi.org/10.34747/g6yb-3412'
+      subject = described_class.new(input: input, from: 'datacite')
+      jats = Maremma.from_xml(subject.jats).fetch('element_citation', {})
+      expect(jats['publication_type'].nil?).to be(true)
+      expect(jats['source']).to eq('Exploring the "Many analysts, one dataset" project from COS')
+      expect(jats['publisher_name']).to eq('Gigantum, Inc.')
+      expect(jats.dig('person_group', 'name')).to eq('given_names' => 'Dav', 'surname' => 'Clark')
+      expect(jats['year']).to eq('__content__' => '2019', 'iso_8601_date' => '2019')
+      expect(jats['month'].nil?).to be(true)
+      expect(jats['day'].nil?).to be(true)
+      expect(jats['pub_id']).to eq('pub_id_type' => 'doi', '__content__' => '10.34747/g6yb-3412')
     end
   end
 
-  context "change metadata as datacite xml" do
-    it "with data citation" do
-      input = "10.7554/eLife.01567"
-      subject = Briard::Metadata.new(input: input, from: "crossref")
-      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
-      expect(jats.dig("publication_type")).to eq("journal")
-      expect(jats.dig("article_title")).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
-      expect(jats.dig("source")).to eq("eLife")
-      expect(jats.dig("person_group", "name").length).to eq(5)
-      expect(jats.dig("person_group", "name").first).to eq("surname"=>"Sankar", "given_names"=>"Martial")
-      expect(jats.dig("year")).to eq("iso_8601_date"=>"2014-02-11", "__content__"=>"2014")
-      expect(jats.dig("month")).to eq("02")
-      expect(jats.dig("day")).to eq("11")
-      expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.7554/elife.01567")
+  context 'change metadata as datacite xml' do
+    it 'with data citation' do
+      input = '10.7554/eLife.01567'
+      subject = described_class.new(input: input, from: 'crossref')
+      jats = Maremma.from_xml(subject.jats).fetch('element_citation', {})
+      expect(jats['publication_type']).to eq('journal')
+      expect(jats['article_title']).to eq('Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth')
+      expect(jats['source']).to eq('eLife')
+      expect(jats.dig('person_group', 'name').length).to eq(5)
+      expect(jats.dig('person_group',
+                      'name').first).to eq('surname' => 'Sankar', 'given_names' => 'Martial')
+      expect(jats['year']).to eq('iso_8601_date' => '2014-02-11', '__content__' => '2014')
+      expect(jats['month']).to eq('02')
+      expect(jats['day']).to eq('11')
+      expect(jats['pub_id']).to eq('pub_id_type' => 'doi', '__content__' => '10.7554/elife.01567')
     end
   end
 end

data/spec/writers/rdf_xml_writer_spec.rb

@@ -3,84 +3,89 @@
 require 'spec_helper'
 
 describe Briard::Metadata, vcr: true do
-  context "write metadata as rdf xml" do
-    it "journal article" do
-      input = "10.7554/eLife.01567"
-      subject = Briard::Metadata.new(input: input, from: "crossref")
+  context 'write metadata as rdf xml' do
+    it 'journal article' do
+      input = '10.7554/eLife.01567'
+      subject = described_class.new(input: input, from: 'crossref')
       expect(subject.valid?).to be true
-      rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch("RDF", {})
-      expect(rdf_xml.dig("ScholarlyArticle", "rdf:about")).to eq("https://doi.org/10.7554/elife.01567")
-      expect(rdf_xml.dig("ScholarlyArticle", "name")).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
-      expect(rdf_xml.dig("ScholarlyArticle", "datePublished", "__content__")).to eq("2014-02-11")
+      rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch('RDF', {})
+      expect(rdf_xml.dig('ScholarlyArticle', 'rdf:about')).to eq('https://doi.org/10.7554/elife.01567')
+      expect(rdf_xml.dig('ScholarlyArticle',
+                         'name')).to eq('Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth')
+      expect(rdf_xml.dig('ScholarlyArticle', 'datePublished', '__content__')).to eq('2014-02-11')
     end
-    
-    it "with pages" do
-      input = "https://doi.org/10.1155/2012/291294"
-      subject = Briard::Metadata.new(input: input, from: "crossref")
+
+    it 'with pages' do
+      input = 'https://doi.org/10.1155/2012/291294'
+      subject = described_class.new(input: input, from: 'crossref')
       expect(subject.valid?).to be true
-      rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch("RDF", {})
-      expect(rdf_xml.dig("ScholarlyArticle", "rdf:about")).to eq("https://doi.org/10.1155/2012/291294")
-      expect(rdf_xml.dig("ScholarlyArticle", "name")).to eq("Delineating a Retesting Zone Using Receiver Operating Characteristic Analysis on Serial QuantiFERON Tuberculosis Test Results in US Healthcare Workers")
-      expect(rdf_xml.dig("ScholarlyArticle", "datePublished", "__content__")).to eq("2012")
-      expect(rdf_xml.dig("ScholarlyArticle", "pageStart")).to eq("1")
-      expect(rdf_xml.dig("ScholarlyArticle", "pageEnd")).to eq("7")
+      rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch('RDF', {})
+      expect(rdf_xml.dig('ScholarlyArticle', 'rdf:about')).to eq('https://doi.org/10.1155/2012/291294')
+      expect(rdf_xml.dig('ScholarlyArticle',
+                         'name')).to eq('Delineating a Retesting Zone Using Receiver Operating Characteristic Analysis on Serial QuantiFERON Tuberculosis Test Results in US Healthcare Workers')
+      expect(rdf_xml.dig('ScholarlyArticle', 'datePublished', '__content__')).to eq('2012')
+      expect(rdf_xml.dig('ScholarlyArticle', 'pageStart')).to eq('1')
+      expect(rdf_xml.dig('ScholarlyArticle', 'pageEnd')).to eq('7')
     end
 
-    it "Crossref DOI" do
-      input = fixture_path + "crossref.bib"
-      subject = Briard::Metadata.new(input: input, from: "bibtex")
+    it 'Crossref DOI' do
+      input = "#{fixture_path}crossref.bib"
+      subject = described_class.new(input: input, from: 'bibtex')
       expect(subject.valid?).to be true
-      rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch("RDF", {})
+      rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch('RDF', {})
 
-      expect(rdf_xml.dig("ScholarlyArticle", "rdf:about")).to eq("https://doi.org/10.7554/elife.01567")
-      expect(rdf_xml.dig("ScholarlyArticle", "name")).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
-      expect(rdf_xml.dig("ScholarlyArticle", "datePublished", "__content__")).to eq("2014")
-      expect(rdf_xml.dig("ScholarlyArticle", "periodical", "Journal", "name")).to eq("eLife")
+      expect(rdf_xml.dig('ScholarlyArticle', 'rdf:about')).to eq('https://doi.org/10.7554/elife.01567')
+      expect(rdf_xml.dig('ScholarlyArticle',
+                         'name')).to eq('Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth')
+      expect(rdf_xml.dig('ScholarlyArticle', 'datePublished', '__content__')).to eq('2014')
+      expect(rdf_xml.dig('ScholarlyArticle', 'periodical', 'Journal', 'name')).to eq('eLife')
     end
 
-    it "BlogPosting" do
-      input = "https://doi.org/10.5438/4K3M-NYVG"
-      subject = Briard::Metadata.new(input: input, from: "datacite")
+    it 'BlogPosting' do
+      input = 'https://doi.org/10.5438/4K3M-NYVG'
+      subject = described_class.new(input: input, from: 'datacite')
       expect(subject.valid?).to be true
-      rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch("RDF", {})
-      expect(rdf_xml.dig("ScholarlyArticle", "rdf:about")).to eq("https://doi.org/10.5438/4k3m-nyvg")
-      expect(rdf_xml.dig("ScholarlyArticle", "name")).to eq("Eating your own Dog Food")
-      expect(rdf_xml.dig("ScholarlyArticle", "keywords")).to eq("datacite, doi, metadata, FOS: Computer and information sciences")
-      expect(rdf_xml.dig("ScholarlyArticle", "datePublished", "__content__")).to eq("2016-12-20")
+      rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch('RDF', {})
+      expect(rdf_xml.dig('ScholarlyArticle', 'rdf:about')).to eq('https://doi.org/10.5438/4k3m-nyvg')
+      expect(rdf_xml.dig('ScholarlyArticle', 'name')).to eq('Eating your own Dog Food')
+      expect(rdf_xml.dig('ScholarlyArticle',
+                         'keywords')).to eq('datacite, doi, metadata, FOS: Computer and information sciences')
+      expect(rdf_xml.dig('ScholarlyArticle', 'datePublished', '__content__')).to eq('2016-12-20')
     end
-    
-    it "BlogPosting Citeproc JSON" do
-      input = fixture_path + "citeproc.json"
-      subject = Briard::Metadata.new(input: input, from: "citeproc")
-      rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch("RDF", {})
-      expect(rdf_xml.dig("BlogPosting", "rdf:about")).to eq("https://doi.org/10.5438/4k3m-nyvg")
-      expect(rdf_xml.dig("BlogPosting", "name")).to eq("Eating your own Dog Food")
-      expect(rdf_xml.dig("BlogPosting", "datePublished", "__content__")).to eq("2016-12-20")
+
+    it 'BlogPosting Citeproc JSON' do
+      input = "#{fixture_path}citeproc.json"
+      subject = described_class.new(input: input, from: 'citeproc')
+      rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch('RDF', {})
+      expect(rdf_xml.dig('BlogPosting', 'rdf:about')).to eq('https://doi.org/10.5438/4k3m-nyvg')
+      expect(rdf_xml.dig('BlogPosting', 'name')).to eq('Eating your own Dog Food')
+      expect(rdf_xml.dig('BlogPosting', 'datePublished', '__content__')).to eq('2016-12-20')
     end
-    
-    it "maremma" do
-      input = "https://github.com/datacite/maremma"
-      subject = Briard::Metadata.new(input: input, from: "codemeta")
-      rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch("RDF", {})
-      expect(rdf_xml.dig("SoftwareSourceCode", "rdf:about")).to eq("https://doi.org/10.5438/qeg0-3gm3")
-      expect(rdf_xml.dig("SoftwareSourceCode", "author", "Person", "rdf:about")).to eq("https://orcid.org/0000-0003-0077-4738")
-      expect(rdf_xml.dig("SoftwareSourceCode", "author", "Person", "name")).to eq("Martin Fenner")
-      expect(rdf_xml.dig("SoftwareSourceCode", "name")).to eq("Maremma: a Ruby library for simplified network calls")
-      expect(rdf_xml.dig("SoftwareSourceCode", "keywords")).to eq("faraday, excon, net/http")
-      expect(rdf_xml.dig("SoftwareSourceCode", "datePublished", "__content__")).to eq("2017-02-24")
+
+    it 'maremma' do
+      input = 'https://github.com/datacite/maremma'
+      subject = described_class.new(input: input, from: 'codemeta')
+      rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch('RDF', {})
+      expect(rdf_xml.dig('SoftwareSourceCode', 'rdf:about')).to eq('https://doi.org/10.5438/qeg0-3gm3')
+      expect(rdf_xml.dig('SoftwareSourceCode', 'author', 'Person', 'rdf:about')).to eq('https://orcid.org/0000-0003-0077-4738')
+      expect(rdf_xml.dig('SoftwareSourceCode', 'author', 'Person', 'name')).to eq('Martin Fenner')
+      expect(rdf_xml.dig('SoftwareSourceCode',
+                         'name')).to eq('Maremma: a Ruby library for simplified network calls')
+      expect(rdf_xml.dig('SoftwareSourceCode', 'keywords')).to eq('faraday, excon, net/http')
+      expect(rdf_xml.dig('SoftwareSourceCode', 'datePublished', '__content__')).to eq('2017-02-24')
     end
 
-    it "BlogPosting schema.org" do
-      input = "https://blog.front-matter.io/posts/eating-your-own-dog-food/"
-      subject = Briard::Metadata.new(input: input, from: "schema_org")
+    it 'BlogPosting schema.org' do
+      input = 'https://blog.front-matter.io/posts/eating-your-own-dog-food/'
+      subject = described_class.new(input: input, from: 'schema_org')
       expect(subject.valid?).to be true
-      rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch("RDF", {})
-      expect(rdf_xml.dig("Article", "rdf:about")).to eq("https://doi.org/10.53731/r79vxn1-97aq74v-ag58n")
-      expect(rdf_xml.dig("Article", "author", "Person", "rdf:about")).to eq("https://orcid.org/0000-0003-1419-2405")
-      expect(rdf_xml.dig("Article", "author", "Person", "name")).to eq("Martin Fenner")
-      expect(rdf_xml.dig("Article", "name")).to eq("Eating your own Dog Food")
-      expect(rdf_xml.dig("Article", "keywords")).to eq("feature")
-      expect(rdf_xml.dig("Article", "datePublished", "__content__")).to eq("2016-12-20T00:00:00Z")
+      rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch('RDF', {})
+      expect(rdf_xml.dig('Article', 'rdf:about')).to eq('https://doi.org/10.53731/r79vxn1-97aq74v-ag58n')
+      expect(rdf_xml.dig('Article', 'author', 'Person', 'rdf:about')).to eq('https://orcid.org/0000-0003-1419-2405')
+      expect(rdf_xml.dig('Article', 'author', 'Person', 'name')).to eq('Martin Fenner')
+      expect(rdf_xml.dig('Article', 'name')).to eq('Eating your own Dog Food')
+      expect(rdf_xml.dig('Article', 'keywords')).to eq('feature')
+      expect(rdf_xml.dig('Article', 'datePublished', '__content__')).to eq('2016-12-20T00:00:00Z')
     end
   end
 end