bn4r 0.1.2 → 0.9.0

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Files changed (432) hide show
  1. data/CHANGELOG +15 -1
  2. data/README +9 -2
  3. data/doc/classes/BNTPGFromPositiveNegativeRelations.html +184 -171
  4. data/doc/classes/BNTPGFromPositiveNegativeRelations.src/M000031.html +20 -20
  5. data/doc/classes/BNTPGFromPositiveNegativeRelations.src/M000032.html +15 -15
  6. data/doc/classes/BayesNet.html +986 -560
  7. data/doc/classes/BayesNet.src/M000003.html +19 -17
  8. data/doc/classes/BayesNet.src/M000004.html +34 -16
  9. data/doc/classes/BayesNet.src/M000005.html +24 -17
  10. data/doc/classes/BayesNet.src/M000006.html +18 -18
  11. data/doc/classes/BayesNet.src/M000007.html +21 -17
  12. data/doc/classes/BayesNet.src/M000008.html +17 -19
  13. data/doc/classes/BayesNet.src/M000009.html +17 -18
  14. data/doc/classes/BayesNet.src/M000010.html +18 -17
  15. data/doc/classes/BayesNet.src/M000011.html +17 -22
  16. data/doc/classes/BayesNet.src/M000012.html +17 -24
  17. data/doc/classes/BayesNet.src/M000013.html +17 -26
  18. data/doc/classes/BayesNet.src/M000014.html +20 -42
  19. data/doc/classes/BayesNet.src/M000015.html +18 -33
  20. data/doc/classes/BayesNet.src/M000016.html +17 -38
  21. data/doc/classes/BayesNet.src/M000017.html +17 -37
  22. data/doc/classes/BayesNet.src/M000018.html +19 -32
  23. data/doc/classes/BayesNet.src/M000019.html +18 -19
  24. data/doc/classes/BayesNet.src/M000020.html +17 -35
  25. data/doc/classes/BayesNet.src/M000021.html +22 -52
  26. data/doc/classes/BayesNet.src/M000022.html +22 -16
  27. data/doc/classes/BayesNet.src/M000023.html +24 -17
  28. data/doc/classes/BayesNet.src/M000024.html +30 -16
  29. data/doc/classes/BayesNet.src/M000025.html +42 -18
  30. data/doc/classes/BayesNet.src/M000026.html +32 -16
  31. data/doc/classes/BayesNet.src/M000027.html +38 -19
  32. data/doc/classes/BayesNet.src/M000028.html +42 -18
  33. data/doc/classes/BayesNet.src/M000029.html +32 -17
  34. data/doc/classes/BayesNet.src/M000030.html +52 -22
  35. data/doc/classes/BayesNetNode.html +604 -476
  36. data/doc/classes/BayesNetNode.src/M000033.html +21 -17
  37. data/doc/classes/BayesNetNode.src/M000034.html +17 -17
  38. data/doc/classes/BayesNetNode.src/M000035.html +20 -25
  39. data/doc/classes/BayesNetNode.src/M000036.html +17 -17
  40. data/doc/classes/BayesNetNode.src/M000037.html +17 -19
  41. data/doc/classes/BayesNetNode.src/M000038.html +17 -17
  42. data/doc/classes/BayesNetNode.src/M000039.html +17 -22
  43. data/doc/classes/BayesNetNode.src/M000040.html +17 -51
  44. data/doc/classes/BayesNetNode.src/M000041.html +21 -18
  45. data/doc/classes/BayesNetNode.src/M000042.html +18 -17
  46. data/doc/classes/BayesNetNode.src/M000043.html +17 -17
  47. data/doc/classes/BayesNetNode.src/M000044.html +17 -25
  48. data/doc/classes/BayesNetNode.src/M000045.html +24 -16
  49. data/doc/classes/BayesNetNode.src/M000046.html +17 -19
  50. data/doc/classes/BayesNetNode.src/M000047.html +19 -17
  51. data/doc/classes/BayesNetNode.src/M000048.html +17 -22
  52. data/doc/classes/BayesNetNode.src/M000049.html +23 -51
  53. data/doc/classes/BayesNetNode.src/M000050.html +51 -21
  54. data/doc/classes/BnTableProbabilitiesGenerator.html +122 -142
  55. data/doc/classes/BnTableProbabilitiesGenerator.src/{M000036.html → M000051.html} +15 -15
  56. data/doc/created.rid +1 -1
  57. data/doc/files/README.html +267 -264
  58. data/doc/files/README_es.html +271 -0
  59. data/doc/files/lib/bn4r/bn_algorithms_rb.html +125 -130
  60. data/doc/files/lib/bn4r/bn_export_rb.html +119 -124
  61. data/doc/files/lib/bn4r/bn_import_rb.html +133 -144
  62. data/doc/files/lib/bn4r/bn_rb.html +124 -134
  63. data/doc/files/lib/bn4r/bn_table_probabilities_rb.html +165 -140
  64. data/doc/files/lib/bn4r/bn_table_probabilities_rb.src/M000001.html +15 -15
  65. data/doc/files/lib/bn4r/bn_table_probabilities_rb.src/M000002.html +26 -0
  66. data/doc/files/lib/bn4r/version_rb.html +97 -100
  67. data/doc/files/lib/bn4r_rb.html +108 -113
  68. data/doc/fr_class_index.html +49 -30
  69. data/doc/fr_file_index.html +54 -34
  70. data/doc/fr_method_index.html +96 -67
  71. data/doc/index.html +25 -23
  72. data/doc/rdoc-style.css +175 -208
  73. data/lib/bn4r/bn.rb +76 -5
  74. data/lib/bn4r/bn_algorithms.rb +13 -3
  75. data/lib/bn4r/bn_export.rb +29 -15
  76. data/lib/bn4r/bn_table_probabilities.rb +10 -0
  77. data/lib/bn4r/version.rb +2 -2
  78. data/test/bn4r_test.rb +104 -0
  79. data/test/test_helper.rb +1 -0
  80. metadata +15 -393
  81. data/doc/classes/BNTPGFromPositiveNegativeRelations.src/M000018.html +0 -41
  82. data/doc/classes/BNTPGFromPositiveNegativeRelations.src/M000019.html +0 -23
  83. data/doc/classes/BNTPGFromPositiveNegativeRelations.src/M000021.html +0 -41
  84. data/doc/classes/BNTPGFromPositiveNegativeRelations.src/M000022.html +0 -41
  85. data/doc/classes/BNTPGFromPositiveNegativeRelations.src/M000023.html +0 -23
  86. data/doc/classes/BNTPGFromPositiveNegativeRelations.src/M000143.html +0 -41
  87. data/doc/classes/BNTPGFromPositiveNegativeRelations.src/M000144.html +0 -23
  88. data/doc/classes/BNTPGFromPositiveNegativeRelations.src/M000145.html +0 -41
  89. data/doc/classes/BNTPGFromPositiveNegativeRelations.src/M000146.html +0 -23
  90. data/doc/classes/BayesNet.src/M000001.html +0 -22
  91. data/doc/classes/BayesNet.src/M000002.html +0 -25
  92. data/doc/classes/BayesNet.src/M000091.html +0 -25
  93. data/doc/classes/BayesNet.src/M000092.html +0 -18
  94. data/doc/classes/BayesNet.src/M000093.html +0 -18
  95. data/doc/classes/BayesNet.src/M000094.html +0 -18
  96. data/doc/classes/BayesNet.src/M000095.html +0 -19
  97. data/doc/classes/BayesNet.src/M000096.html +0 -18
  98. data/doc/classes/BayesNet.src/M000097.html +0 -20
  99. data/doc/classes/BayesNet.src/M000098.html +0 -19
  100. data/doc/classes/BayesNet.src/M000099.html +0 -18
  101. data/doc/classes/BayesNet.src/M000100.html +0 -23
  102. data/doc/classes/BayesNet.src/M000101.html +0 -25
  103. data/doc/classes/BayesNet.src/M000102.html +0 -27
  104. data/doc/classes/BayesNet.src/M000103.html +0 -43
  105. data/doc/classes/BayesNet.src/M000104.html +0 -34
  106. data/doc/classes/BayesNet.src/M000105.html +0 -39
  107. data/doc/classes/BayesNet.src/M000106.html +0 -38
  108. data/doc/classes/BayesNet.src/M000107.html +0 -33
  109. data/doc/classes/BayesNet.src/M000108.html +0 -18
  110. data/doc/classes/BayesNet.src/M000109.html +0 -35
  111. data/doc/classes/BayesNet.src/M000110.html +0 -22
  112. data/doc/classes/BayesNet.src/M000111.html +0 -18
  113. data/doc/classes/BayesNet.src/M000112.html +0 -18
  114. data/doc/classes/BayesNet.src/M000113.html +0 -18
  115. data/doc/classes/BayesNet.src/M000114.html +0 -19
  116. data/doc/classes/BayesNet.src/M000115.html +0 -18
  117. data/doc/classes/BayesNet.src/M000116.html +0 -20
  118. data/doc/classes/BayesNet.src/M000117.html +0 -19
  119. data/doc/classes/BayesNet.src/M000118.html +0 -18
  120. data/doc/classes/BayesNet.src/M000119.html +0 -23
  121. data/doc/classes/BayesNet.src/M000120.html +0 -25
  122. data/doc/classes/BayesNet.src/M000121.html +0 -27
  123. data/doc/classes/BayesNet.src/M000122.html +0 -43
  124. data/doc/classes/BayesNet.src/M000123.html +0 -33
  125. data/doc/classes/BayesNet.src/M000124.html +0 -39
  126. data/doc/classes/BayesNet.src/M000125.html +0 -38
  127. data/doc/classes/BayesNet.src/M000126.html +0 -33
  128. data/doc/classes/BayesNetNode.src/M000020.html +0 -22
  129. data/doc/classes/BayesNetNode.src/M000021.html +0 -21
  130. data/doc/classes/BayesNetNode.src/M000022.html +0 -18
  131. data/doc/classes/BayesNetNode.src/M000023.html +0 -22
  132. data/doc/classes/BayesNetNode.src/M000024.html +0 -22
  133. data/doc/classes/BayesNetNode.src/M000025.html +0 -21
  134. data/doc/classes/BayesNetNode.src/M000026.html +0 -18
  135. data/doc/classes/BayesNetNode.src/M000027.html +0 -18
  136. data/doc/classes/BayesNetNode.src/M000028.html +0 -18
  137. data/doc/classes/BayesNetNode.src/M000029.html +0 -18
  138. data/doc/classes/BayesNetNode.src/M000030.html +0 -18
  139. data/doc/classes/BayesNetNode.src/M000031.html +0 -19
  140. data/doc/classes/BayesNetNode.src/M000032.html +0 -19
  141. data/doc/classes/BayesNetNode.src/M000051.html +0 -21
  142. data/doc/classes/BayesNetNode.src/M000052.html +0 -18
  143. data/doc/classes/BayesNetNode.src/M000053.html +0 -18
  144. data/doc/classes/BayesNetNode.src/M000054.html +0 -18
  145. data/doc/classes/BayesNetNode.src/M000055.html +0 -18
  146. data/doc/classes/BayesNetNode.src/M000056.html +0 -18
  147. data/doc/classes/BayesNetNode.src/M000057.html +0 -19
  148. data/doc/classes/BayesNetNode.src/M000058.html +0 -19
  149. data/doc/classes/BayesNetNode.src/M000059.html +0 -18
  150. data/doc/classes/BayesNetNode.src/M000060.html +0 -18
  151. data/doc/classes/BayesNetNode.src/M000061.html +0 -26
  152. data/doc/classes/BayesNetNode.src/M000062.html +0 -18
  153. data/doc/classes/BayesNetNode.src/M000063.html +0 -20
  154. data/doc/classes/BayesNetNode.src/M000064.html +0 -18
  155. data/doc/classes/BayesNetNode.src/M000065.html +0 -23
  156. data/doc/classes/BayesNetNode.src/M000066.html +0 -52
  157. data/doc/classes/BayesNetNode.src/M000147.html +0 -22
  158. data/doc/classes/BayesNetNode.src/M000148.html +0 -21
  159. data/doc/classes/BayesNetNode.src/M000149.html +0 -18
  160. data/doc/classes/BayesNetNode.src/M000150.html +0 -18
  161. data/doc/classes/BayesNetNode.src/M000151.html +0 -18
  162. data/doc/classes/BayesNetNode.src/M000152.html +0 -18
  163. data/doc/classes/BayesNetNode.src/M000153.html +0 -18
  164. data/doc/classes/BayesNetNode.src/M000154.html +0 -19
  165. data/doc/classes/BayesNetNode.src/M000155.html +0 -19
  166. data/doc/classes/BayesNetNode.src/M000156.html +0 -18
  167. data/doc/classes/BayesNetNode.src/M000157.html +0 -18
  168. data/doc/classes/BayesNetNode.src/M000158.html +0 -26
  169. data/doc/classes/BayesNetNode.src/M000159.html +0 -18
  170. data/doc/classes/BayesNetNode.src/M000160.html +0 -20
  171. data/doc/classes/BayesNetNode.src/M000161.html +0 -18
  172. data/doc/classes/BayesNetNode.src/M000162.html +0 -23
  173. data/doc/classes/BayesNetNode.src/M000163.html +0 -52
  174. data/doc/classes/BayesNetNode.src/M000164.html +0 -22
  175. data/doc/classes/BayesNetNode.src/M000165.html +0 -21
  176. data/doc/classes/BayesNetNode.src/M000166.html +0 -18
  177. data/doc/classes/BayesNetNode.src/M000167.html +0 -18
  178. data/doc/classes/BayesNetNode.src/M000168.html +0 -18
  179. data/doc/classes/BayesNetNode.src/M000169.html +0 -18
  180. data/doc/classes/BayesNetNode.src/M000170.html +0 -18
  181. data/doc/classes/BayesNetNode.src/M000171.html +0 -19
  182. data/doc/classes/BayesNetNode.src/M000172.html +0 -18
  183. data/doc/classes/BayesNetNode.src/M000173.html +0 -18
  184. data/doc/classes/BayesNetNode.src/M000174.html +0 -26
  185. data/doc/classes/BayesNetNode.src/M000175.html +0 -18
  186. data/doc/classes/BayesNetNode.src/M000176.html +0 -20
  187. data/doc/classes/BayesNetNode.src/M000177.html +0 -18
  188. data/doc/classes/BayesNetNode.src/M000178.html +0 -23
  189. data/doc/classes/BayesNetNode.src/M000179.html +0 -52
  190. data/doc/classes/Bn4rTest.html +0 -549
  191. data/doc/classes/Bn4rTest.src/M000180.html +0 -17
  192. data/doc/classes/Bn4rTest.src/M000181.html +0 -21
  193. data/doc/classes/Bn4rTest.src/M000182.html +0 -21
  194. data/doc/classes/Bn4rTest.src/M000183.html +0 -34
  195. data/doc/classes/Bn4rTest.src/M000184.html +0 -27
  196. data/doc/classes/Bn4rTest.src/M000185.html +0 -23
  197. data/doc/classes/Bn4rTest.src/M000186.html +0 -42
  198. data/doc/classes/Bn4rTest.src/M000187.html +0 -39
  199. data/doc/classes/Bn4rTest.src/M000188.html +0 -25
  200. data/doc/classes/Bn4rTest.src/M000189.html +0 -45
  201. data/doc/classes/Bn4rTest.src/M000190.html +0 -32
  202. data/doc/classes/Bn4rTest.src/M000191.html +0 -32
  203. data/doc/classes/Bn4rTest.src/M000192.html +0 -45
  204. data/doc/classes/Bn4rTest.src/M000193.html +0 -41
  205. data/doc/classes/Bn4rTest.src/M000194.html +0 -42
  206. data/doc/classes/Bn4rTest.src/M000195.html +0 -17
  207. data/doc/classes/Bn4rTest.src/M000196.html +0 -21
  208. data/doc/classes/Bn4rTest.src/M000197.html +0 -21
  209. data/doc/classes/Bn4rTest.src/M000198.html +0 -34
  210. data/doc/classes/Bn4rTest.src/M000199.html +0 -27
  211. data/doc/classes/Bn4rTest.src/M000200.html +0 -23
  212. data/doc/classes/Bn4rTest.src/M000201.html +0 -42
  213. data/doc/classes/Bn4rTest.src/M000202.html +0 -39
  214. data/doc/classes/Bn4rTest.src/M000203.html +0 -25
  215. data/doc/classes/Bn4rTest.src/M000204.html +0 -45
  216. data/doc/classes/Bn4rTest.src/M000205.html +0 -32
  217. data/doc/classes/Bn4rTest.src/M000206.html +0 -32
  218. data/doc/classes/BnTableProbabilitiesGenerator.src/M000040.html +0 -18
  219. data/doc/classes/BnTableProbabilitiesGenerator.src/M000041.html +0 -18
  220. data/doc/classes/BnTableProbabilitiesGenerator.src/M000067.html +0 -18
  221. data/doc/classes/BnTableProbabilitiesGenerator.src/M000207.html +0 -18
  222. data/doc/classes/BnTableProbabilitiesGenerator.src/M000208.html +0 -18
  223. data/doc/classes/ConfigTable.html +0 -500
  224. data/doc/classes/ConfigTable.src/M000007.html +0 -25
  225. data/doc/classes/ConfigTable.src/M000008.html +0 -18
  226. data/doc/classes/ConfigTable.src/M000009.html +0 -18
  227. data/doc/classes/ConfigTable.src/M000010.html +0 -18
  228. data/doc/classes/ConfigTable.src/M000011.html +0 -18
  229. data/doc/classes/ConfigTable.src/M000012.html +0 -18
  230. data/doc/classes/ConfigTable.src/M000013.html +0 -18
  231. data/doc/classes/ConfigTable.src/M000014.html +0 -18
  232. data/doc/classes/ConfigTable.src/M000015.html +0 -18
  233. data/doc/classes/ConfigTable.src/M000016.html +0 -19
  234. data/doc/classes/ConfigTable.src/M000017.html +0 -21
  235. data/doc/classes/ConfigTable.src/M000018.html +0 -20
  236. data/doc/classes/ConfigTable.src/M000019.html +0 -18
  237. data/doc/classes/ConfigTable.src/M000020.html +0 -25
  238. data/doc/classes/ConfigTable.src/M000021.html +0 -23
  239. data/doc/classes/ConfigTable.src/M000022.html +0 -20
  240. data/doc/classes/ConfigTable.src/M000023.html +0 -20
  241. data/doc/classes/ConfigTable.src/M000024.html +0 -23
  242. data/doc/classes/ConfigTable.src/M000025.html +0 -19
  243. data/doc/classes/ConfigTable.src/M000026.html +0 -18
  244. data/doc/classes/ConfigTable.src/M000027.html +0 -18
  245. data/doc/classes/ConfigTable/BoolItem.html +0 -154
  246. data/doc/classes/ConfigTable/BoolItem.src/M000028.html +0 -18
  247. data/doc/classes/ConfigTable/BoolItem.src/M000029.html +0 -18
  248. data/doc/classes/ConfigTable/ExecItem.html +0 -201
  249. data/doc/classes/ConfigTable/ExecItem.src/M000047.html +0 -20
  250. data/doc/classes/ConfigTable/ExecItem.src/M000048.html +0 -18
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  254. data/doc/classes/ConfigTable/Item.html +0 -250
  255. data/doc/classes/ConfigTable/Item.src/M000054.html +0 -22
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  260. data/doc/classes/ConfigTable/Item.src/M000059.html +0 -18
  261. data/doc/classes/ConfigTable/MetaConfigEnvironment.html +0 -325
  262. data/doc/classes/ConfigTable/MetaConfigEnvironment.src/M000034.html +0 -19
  263. data/doc/classes/ConfigTable/MetaConfigEnvironment.src/M000035.html +0 -18
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  274. data/doc/classes/ConfigTable/MetaConfigEnvironment.src/M000046.html +0 -19
  275. data/doc/classes/ConfigTable/PackageSelectionItem.html +0 -169
  276. data/doc/classes/ConfigTable/PackageSelectionItem.src/M000032.html +0 -19
  277. data/doc/classes/ConfigTable/PackageSelectionItem.src/M000033.html +0 -18
  278. data/doc/classes/ConfigTable/PathItem.html +0 -139
  279. data/doc/classes/ConfigTable/PathItem.src/M000031.html +0 -18
  280. data/doc/classes/ConfigTable/ProgramItem.html +0 -139
  281. data/doc/classes/ConfigTable/ProgramItem.src/M000030.html +0 -18
  282. data/doc/classes/ConfigTable/SelectItem.html +0 -156
  283. data/doc/classes/ConfigTable/SelectItem.src/M000052.html +0 -19
  284. data/doc/classes/ConfigTable/SelectItem.src/M000053.html +0 -18
  285. data/doc/classes/Enumerable.html +0 -118
  286. data/doc/classes/Errno.html +0 -111
  287. data/doc/classes/Errno/ENOTEMPTY.html +0 -111
  288. data/doc/classes/File.html +0 -166
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  291. data/doc/classes/File.src/M000278.html +0 -18
  292. data/doc/classes/FileOperations.html +0 -375
  293. data/doc/classes/FileOperations.src/M000291.html +0 -31
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- <title>Class: BayesNetNode</title>
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- <td class="class-name-in-header">BayesNetNode</td>
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- <td><strong>In:</strong></td>
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- <td>
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- <a href="../files/lib/bn4r/bn_rb.html">
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- lib/bn4r/bn.rb
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- </a>
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- <br />
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-
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- <td><strong>Parent:</strong></td>
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- Object
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- <a href="#M000033">all_parents_with_values?</a>&nbsp;&nbsp;
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- <a href="#M000027">clear_value</a>&nbsp;&nbsp;
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- <a href="#M000039">get_probability</a>&nbsp;&nbsp;
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- <a href="#M000040">get_table_index</a>&nbsp;&nbsp;
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- <a href="#M000037">get_table_size</a>&nbsp;&nbsp;
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- <a href="#M000024">new</a>&nbsp;&nbsp;
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- <a href="#M000030">num_parents</a>&nbsp;&nbsp;
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- <a href="#M000028">parents</a>&nbsp;&nbsp;
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- <a href="#M000036">parents_assignments</a>&nbsp;&nbsp;
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- <a href="#M000029">relations</a>&nbsp;&nbsp;
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- <a href="#M000032">root?</a>&nbsp;&nbsp;
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- <a href="#M000038">set_probability</a>&nbsp;&nbsp;
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- <a href="#M000035">set_probability_table</a>&nbsp;&nbsp;
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- <a href="#M000026">set_value</a>&nbsp;&nbsp;
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- <a href="#M000034">to_s</a>&nbsp;&nbsp;
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- <td class="context-item-name">extra_info</td>
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- <td class="context-item-name">name</td>
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- <p>
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- create de <a href="BayesNetNode.html">BayesNetNode</a> name is the
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- identifier of the node in the Bayesian Network outcomes is an array with
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- <dl>
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- <dt>optional</dt><dd>extra_info extra information that can be putted in the node
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- Returns a copy of the node itself
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- Function not implemented yet
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- <span class="method-name">get_probability</span><span class="method-args">(node_assignment = value, givens_assignments = parents_assignments)</span>
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- <div class="method-description">
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- <p>
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- Returns the probability of an assignment to a node conditioned to
264
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- <pre>
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- P(node = node_assignment | givens = givens_assignments)
268
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271
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- Returns the corresponding index for the probability table given
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306
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- <div class="method-heading">
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- <a href="BayesNetNode.src/M000028.html" target="Code" class="method-signature"
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- onclick="popupCode('BayesNetNode.src/M000028.html');return false;">
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- <span class="method-name">parents</span><span class="method-args">()</span>
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- </a>
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- </div>
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-
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- <div class="method-description">
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- <p>
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- Return node parents
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- </p>
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- </div>
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- </div>
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-
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- <div id="method-M000036" class="method-detail">
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- <a name="M000036"></a>
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-
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- <div class="method-heading">
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- <a href="BayesNetNode.src/M000036.html" target="Code" class="method-signature"
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- onclick="popupCode('BayesNetNode.src/M000036.html');return false;">
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- <span class="method-name">parents_assignments</span><span class="method-args">()</span>
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- </a>
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- </div>
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-
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- <div class="method-description">
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- </div>
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- </div>
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-
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- <div id="method-M000029" class="method-detail">
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- <a name="M000029"></a>
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-
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- <div class="method-heading">
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- <a href="BayesNetNode.src/M000029.html" target="Code" class="method-signature"
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- onclick="popupCode('BayesNetNode.src/M000029.html');return false;">
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- <span class="method-name">relations</span><span class="method-args">()</span>
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- </a>
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- </div>
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-
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- <div class="method-description">
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- <p>
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- Return node relations
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- </p>
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- </div>
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- </div>
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-
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- <div id="method-M000032" class="method-detail">
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- <a name="M000032"></a>
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-
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- <div class="method-heading">
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- <a href="BayesNetNode.src/M000032.html" target="Code" class="method-signature"
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- onclick="popupCode('BayesNetNode.src/M000032.html');return false;">
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- <span class="method-name">root?</span><span class="method-args">()</span>
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- </a>
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- </div>
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-
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- <div class="method-description">
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- <p>
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- Returns true if the node is a root node ( doesn&#8217;t have parents ).
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- </p>
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- </div>
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- </div>
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-
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- <div id="method-M000038" class="method-detail">
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- <a name="M000038"></a>
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-
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- <div class="method-heading">
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- <a href="BayesNetNode.src/M000038.html" target="Code" class="method-signature"
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- onclick="popupCode('BayesNetNode.src/M000038.html');return false;">
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- <span class="method-name">set_probability</span><span class="method-args">(number, node_assignment, givens_assignments)</span>
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- </a>
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- </div>
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-
403
- <div class="method-description">
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- <p>
405
- Sets a probability to the node with a node_assignment conditioned to
406
- given_assignments
407
- </p>
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- <pre>
409
- P (node = node_assignment | givens = givens_assignments) = number
410
- </pre>
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- </div>
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- </div>
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-
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- <div id="method-M000035" class="method-detail">
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- <a name="M000035"></a>
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-
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- <div class="method-heading">
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- <a href="BayesNetNode.src/M000035.html" target="Code" class="method-signature"
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- onclick="popupCode('BayesNetNode.src/M000035.html');return false;">
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- <span class="method-name">set_probability_table</span><span class="method-args">(givens, table)</span>
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- </a>
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- </div>
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-
424
- <div class="method-description">
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- <p>
426
- If givens don&#8217;t exist, it adds them
427
- </p>
428
- <p>
429
- if givens is nil, then internal givens is assumed table must have
430
- probability values in order like BAD!!! [g0=pos0 &amp; g1=pos0 &amp;
431
- &#8230; &amp; node_value=pos0, &#8230;, g0=pos0 &amp; g1=pos0 &amp; &#8230;
432
- &amp; node_value=posN,
433
- </p>
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- </div>
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- </div>
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-
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- <div id="method-M000026" class="method-detail">
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- <a name="M000026"></a>
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-
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- <div class="method-heading">
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- <a href="BayesNetNode.src/M000026.html" target="Code" class="method-signature"
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- onclick="popupCode('BayesNetNode.src/M000026.html');return false;">
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- <span class="method-name">set_value</span><span class="method-args">(value)</span>
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- </a>
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- </div>
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-
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- <div class="method-description">
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- </div>
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- </div>
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-
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- <div id="method-M000034" class="method-detail">
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- <a name="M000034"></a>
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-
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- <div class="method-heading">
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- <a href="BayesNetNode.src/M000034.html" target="Code" class="method-signature"
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- onclick="popupCode('BayesNetNode.src/M000034.html');return false;">
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- <span class="method-name">to_s</span><span class="method-args">()</span>
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- </a>
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- </div>
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-
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- <div class="method-description">
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- </div>
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- </div>
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-
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-
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- </div>
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-
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-
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- </div>
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-
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-
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- <div id="validator-badges">
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- <p><small><a href="http://validator.w3.org/check/referer">[Validate]</a></small></p>
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- </div>
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-
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- </body>
1
+ <?xml version="1.0" encoding="iso-8859-1"?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+ <html>
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+ <head>
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+ <title>Class: BayesNetNode</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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+ <link rel="stylesheet" href=".././rdoc-style.css" type="text/css" media="screen" />
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+ <script language="JavaScript" type="text/javascript">
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+
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+ function toggleSource( id )
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+ {
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+ var elem
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+ var link
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+
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+ if( document.getElementById )
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+ {
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+ elem = document.getElementById( id )
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+ link = document.getElementById( "l_" + id )
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+ }
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+ else if ( document.all )
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+ {
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+ elem = eval( "document.all." + id )
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+ link = eval( "document.all.l_" + id )
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+ return false;
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+ if( elem.style.display == "block" )
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+ {
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+ elem.style.display = "none"
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+ link.innerHTML = "show source"
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+ }
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+ else
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+ {
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+ elem.style.display = "block"
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+ link.innerHTML = "hide source"
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+ }
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+ }
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+
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+ function openCode( url )
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+ {
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+ window.open( url, "SOURCE_CODE", "width=400,height=400,scrollbars=yes" )
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+ }
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+ // ]]>
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+ </script>
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+ </head>
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+
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+ <body>
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+ <table width="100%" border='0' cellpadding='0' cellspacing='0' class='banner'><tr>
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+ <td class="file-title"><span class="file-title-prefix">Class</span><br />BayesNetNode</td>
55
+ <td align="right">
56
+ <table cellspacing=0 cellpadding=2>
57
+ <tr valign="top">
58
+ <td>In:</td>
59
+ <td>
60
+ <a href="../files/lib/bn4r/bn_rb.html">lib/bn4r/bn.rb</a>
61
+ </td>
62
+ </tr>
63
+ <tr>
64
+ <td>Parent:</td>
65
+ <td>
66
+ Object
67
+ </td>
68
+ </tr>
69
+ </table>
70
+ </td>
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+ </tr>
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+ </table>
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+ <!-- banner header -->
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+
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+ <div id="bodyContent">
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+ <div id="content">
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+
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+
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+
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+
81
+ <div class="sectiontitle">Methods</div>
82
+ <ul>
83
+ <li><a href="#M000043">all_parents_with_values?</a></li>
84
+ <li><a href="#M000037">clear_value</a></li>
85
+ <li><a href="#M000035">copy</a></li>
86
+ <li><a href="#M000041">deep</a></li>
87
+ <li><a href="#M000049">get_probability</a></li>
88
+ <li><a href="#M000050">get_table_index</a></li>
89
+ <li><a href="#M000047">get_table_size</a></li>
90
+ <li><a href="#M000033">new</a></li>
91
+ <li><a href="#M000040">num_parents</a></li>
92
+ <li><a href="#M000038">parents</a></li>
93
+ <li><a href="#M000046">parents_assignments</a></li>
94
+ <li><a href="#M000039">relations</a></li>
95
+ <li><a href="#M000034">rename</a></li>
96
+ <li><a href="#M000042">root?</a></li>
97
+ <li><a href="#M000048">set_probability</a></li>
98
+ <li><a href="#M000045">set_probability_table</a></li>
99
+ <li><a href="#M000036">set_value</a></li>
100
+ <li><a href="#M000044">to_s</a></li>
101
+ </ul>
102
+
103
+
104
+
105
+
106
+
107
+ <div class="sectiontitle">Attributes</div>
108
+ <table border='0' cellpadding='5'>
109
+ <tr valign='top'>
110
+ <td class='attr-rw'>
111
+ [R]
112
+ </td>
113
+ <td class='attr-name'>extra_info</td>
114
+ <td class='attr-desc'></td>
115
+ </tr>
116
+ <tr valign='top'>
117
+ <td class='attr-rw'>
118
+ [R]
119
+ </td>
120
+ <td class='attr-name'>name</td>
121
+ <td class='attr-desc'></td>
122
+ </tr>
123
+ <tr valign='top'>
124
+ <td class='attr-rw'>
125
+ [R]
126
+ </td>
127
+ <td class='attr-name'>outcomes</td>
128
+ <td class='attr-desc'></td>
129
+ </tr>
130
+ <tr valign='top'>
131
+ <td class='attr-rw'>
132
+ [R]
133
+ </td>
134
+ <td class='attr-name'>relations</td>
135
+ <td class='attr-desc'></td>
136
+ </tr>
137
+ <tr valign='top'>
138
+ <td class='attr-rw'>
139
+ [R]
140
+ </td>
141
+ <td class='attr-name'>value</td>
142
+ <td class='attr-desc'></td>
143
+ </tr>
144
+ </table>
145
+
146
+ <div class="sectiontitle">Public Class methods</div>
147
+ <div class="method">
148
+ <div class="title">
149
+ <a name="M000033"></a><b>new</b>( name , outcomes = [true, false], extra_info = nil)
150
+ </div>
151
+ <div class="description">
152
+ <p>
153
+ create de <a href="BayesNetNode.html">BayesNetNode</a> name is the
154
+ identifier of the node in the Bayesian Network outcomes is an array with
155
+ the posible values that this node can have, by default [true, false].
156
+ </p>
157
+ <dl>
158
+ <dt>optional</dt><dd>extra_info extra information that can be putted in the node
159
+
160
+ </dd>
161
+ </dl>
162
+ </div>
163
+ <div class="sourcecode">
164
+ <p class="source-link">[ <a href="javascript:toggleSource('M000033_source')" id="l_M000033_source">show source</a> ]</p>
165
+ <div id="M000033_source" class="dyn-source">
166
+ <pre>
167
+ <span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 172</span>
168
+ 172: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">initialize</span> ( <span class="ruby-identifier">name</span> , <span class="ruby-identifier">outcomes</span> = [<span class="ruby-keyword kw">true</span>, <span class="ruby-keyword kw">false</span>], <span class="ruby-identifier">extra_info</span> = <span class="ruby-keyword kw">nil</span>)
169
+ 173: <span class="ruby-ivar">@name</span> = <span class="ruby-identifier">name</span>
170
+ 174: <span class="ruby-ivar">@outcomes</span> = <span class="ruby-identifier">outcomes</span>
171
+ 175: <span class="ruby-ivar">@extra_info</span> = <span class="ruby-identifier">extra_info</span>
172
+ 176: <span class="ruby-ivar">@givens</span> = []
173
+ 177: <span class="ruby-ivar">@relations</span> = []
174
+ 178: <span class="ruby-keyword kw">end</span>
175
+ </pre>
176
+ </div>
177
+ </div>
178
+ </div>
179
+ <div class="sectiontitle">Public Instance methods</div>
180
+ <div class="method">
181
+ <div class="title">
182
+ <a name="M000043"></a><b>all_parents_with_values?</b>()
183
+ </div>
184
+ <div class="description">
185
+ <p>
186
+ Returns true if all parents of the node in the bn have values
187
+ </p>
188
+ </div>
189
+ <div class="sourcecode">
190
+ <p class="source-link">[ <a href="javascript:toggleSource('M000043_source')" id="l_M000043_source">show source</a> ]</p>
191
+ <div id="M000043_source" class="dyn-source">
192
+ <pre>
193
+ <span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 232</span>
194
+ 232: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">all_parents_with_values?</span>
195
+ 233: <span class="ruby-identifier">parents</span>.<span class="ruby-identifier">select</span> {<span class="ruby-operator">|</span><span class="ruby-identifier">v</span><span class="ruby-operator">|</span> <span class="ruby-operator">!</span><span class="ruby-identifier">v</span>.<span class="ruby-identifier">value</span>.<span class="ruby-identifier">nil?</span> }.<span class="ruby-identifier">size</span> <span class="ruby-operator">==</span> <span class="ruby-identifier">parents</span>.<span class="ruby-identifier">size</span>
196
+ 234: <span class="ruby-keyword kw">end</span>
197
+ </pre>
198
+ </div>
199
+ </div>
200
+ </div>
201
+ <div class="method">
202
+ <div class="title">
203
+ <a name="M000037"></a><b>clear_value</b>()
204
+ </div>
205
+ <div class="sourcecode">
206
+ <p class="source-link">[ <a href="javascript:toggleSource('M000037_source')" id="l_M000037_source">show source</a> ]</p>
207
+ <div id="M000037_source" class="dyn-source">
208
+ <pre>
209
+ <span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 197</span>
210
+ 197: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">clear_value</span>
211
+ 198: <span class="ruby-ivar">@value</span> = <span class="ruby-keyword kw">nil</span>
212
+ 199: <span class="ruby-keyword kw">end</span>
213
+ </pre>
214
+ </div>
215
+ </div>
216
+ </div>
217
+ <div class="method">
218
+ <div class="title">
219
+ <a name="M000035"></a><b>copy</b>()
220
+ </div>
221
+ <div class="description">
222
+ <p>
223
+ Returns a copy of the node itself
224
+ </p>
225
+ </div>
226
+ <div class="sourcecode">
227
+ <p class="source-link">[ <a href="javascript:toggleSource('M000035_source')" id="l_M000035_source">show source</a> ]</p>
228
+ <div id="M000035_source" class="dyn-source">
229
+ <pre>
230
+ <span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 186</span>
231
+ 186: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">copy</span>
232
+ 187: <span class="ruby-identifier">tmp</span> = <span class="ruby-constant">BayesNetNode</span>.<span class="ruby-identifier">new</span>(<span class="ruby-ivar">@name</span>, <span class="ruby-ivar">@outcomes</span>, <span class="ruby-ivar">@extra_info</span>)
233
+ 188: <span class="ruby-identifier">tmp</span>.<span class="ruby-identifier">set_value</span>(<span class="ruby-ivar">@value</span>)
234
+ 189: <span class="ruby-identifier">tmp</span>.<span class="ruby-identifier">set_probability_table</span>(<span class="ruby-ivar">@givens</span>, <span class="ruby-ivar">@table</span>)
235
+ 190: <span class="ruby-identifier">tmp</span>
236
+ 191: <span class="ruby-keyword kw">end</span>
237
+ </pre>
238
+ </div>
239
+ </div>
240
+ </div>
241
+ <div class="method">
242
+ <div class="title">
243
+ <a name="M000041"></a><b>deep</b>(node=self)
244
+ </div>
245
+ <div class="description">
246
+ <p>
247
+ Returns de deep of the node ( larger path to root nodes )
248
+ </p>
249
+ </div>
250
+ <div class="sourcecode">
251
+ <p class="source-link">[ <a href="javascript:toggleSource('M000041_source')" id="l_M000041_source">show source</a> ]</p>
252
+ <div id="M000041_source" class="dyn-source">
253
+ <pre>
254
+ <span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 217</span>
255
+ 217: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">deep</span>(<span class="ruby-identifier">node</span>=<span class="ruby-keyword kw">self</span>)
256
+ 218: <span class="ruby-identifier">res</span> = <span class="ruby-value">1</span>
257
+ 219: <span class="ruby-identifier">res</span> <span class="ruby-operator">+=</span> <span class="ruby-identifier">node</span>.<span class="ruby-identifier">parents</span>.<span class="ruby-identifier">collect</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">parent</span><span class="ruby-operator">|</span>
258
+ 220: <span class="ruby-identifier">parent</span>.<span class="ruby-identifier">deep</span>
259
+ 221: }.<span class="ruby-identifier">max</span> <span class="ruby-keyword kw">unless</span> <span class="ruby-identifier">node</span>.<span class="ruby-identifier">root?</span>
260
+ 222: <span class="ruby-keyword kw">return</span> <span class="ruby-identifier">res</span>
261
+ 223: <span class="ruby-keyword kw">end</span>
262
+ </pre>
263
+ </div>
264
+ </div>
265
+ </div>
266
+ <div class="method">
267
+ <div class="title">
268
+ <a name="M000049"></a><b>get_probability</b>(node_assignment = value, givens_assignments = parents_assignments)
269
+ </div>
270
+ <div class="description">
271
+ <p>
272
+ Returns the probability of an assignment to a node conditioned to
273
+ given_assignments
274
+ </p>
275
+ <pre>
276
+ P(node = node_assignment | givens = givens_assignments)
277
+ </pre>
278
+ <p>
279
+ All givens_assigments must have value.
280
+ </p>
281
+ </div>
282
+ <div class="sourcecode">
283
+ <p class="source-link">[ <a href="javascript:toggleSource('M000049_source')" id="l_M000049_source">show source</a> ]</p>
284
+ <div id="M000049_source" class="dyn-source">
285
+ <pre>
286
+ <span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 280</span>
287
+ 280: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">get_probability</span>(<span class="ruby-identifier">node_assignment</span> = <span class="ruby-identifier">value</span>, <span class="ruby-identifier">givens_assignments</span> = <span class="ruby-identifier">parents_assignments</span>)
288
+ 281: <span class="ruby-comment cmt"># raise &quot;Node must have a value and a givens_assignments, otherwise put&quot; \
289
+ 282: <span class="ruby-comment cmt"># + &quot;them in function call&quot; if node_assignment.nil? or givens_assignments.nil?
290
+ 283: <span class="ruby-comment cmt"># if there's a cached table take the index
291
+ 284: <span class="ruby-keyword kw">return</span> <span class="ruby-ivar">@table</span>[<span class="ruby-identifier">get_table_index</span>(<span class="ruby-identifier">node_assignment</span>, <span class="ruby-identifier">givens_assignments</span>)] <span class="ruby-keyword kw">if</span> <span class="ruby-ivar">@table_is_a_proc</span>.<span class="ruby-identifier">nil?</span> <span class="ruby-keyword kw">or</span> <span class="ruby-operator">!</span><span class="ruby-ivar">@table_is_a_proc</span>
292
+ 285: <span class="ruby-comment cmt"># if the value is calculated on the fly using a function instead of
293
+ 286: <span class="ruby-comment cmt"># a table
294
+ 287: <span class="ruby-keyword kw">return</span> <span class="ruby-ivar">@table</span>[<span class="ruby-identifier">node_assignment</span>, <span class="ruby-identifier">givens_assignments</span>]
295
+ 288: <span class="ruby-keyword kw">end</span>
296
+ </pre>
297
+ </div>
298
+ </div>
299
+ </div>
300
+ <div class="method">
301
+ <div class="title">
302
+ <a name="M000050"></a><b>get_table_index</b>(node_assignment, givens_assignments)
303
+ </div>
304
+ <div class="description">
305
+ <p>
306
+ Returns the corresponding index for the probability table given
307
+ <em>node_assignment</em> and <em>givens_assignments</em>
308
+ </p>
309
+ </div>
310
+ <div class="sourcecode">
311
+ <p class="source-link">[ <a href="javascript:toggleSource('M000050_source')" id="l_M000050_source">show source</a> ]</p>
312
+ <div id="M000050_source" class="dyn-source">
313
+ <pre>
314
+ <span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 292</span>
315
+ 292: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">get_table_index</span>(<span class="ruby-identifier">node_assignment</span>, <span class="ruby-identifier">givens_assignments</span>)
316
+ 293: <span class="ruby-identifier">x</span> = []
317
+ 294: <span class="ruby-identifier">indices</span> = []
318
+ 295: <span class="ruby-identifier">index</span> = <span class="ruby-value">0</span>
319
+ 296:
320
+ 297: <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">givens_assignments</span>.<span class="ruby-identifier">length</span> <span class="ruby-operator">!=</span> <span class="ruby-ivar">@givens</span>.<span class="ruby-identifier">length</span>
321
+ 298: <span class="ruby-identifier">raise</span> <span class="ruby-value str">&quot;Error. Number of assignments does not match node.&quot;</span>
322
+ 299: <span class="ruby-keyword kw">end</span>
323
+ 300:
324
+ 301: <span class="ruby-keyword kw">if</span> <span class="ruby-ivar">@givens</span>.<span class="ruby-identifier">length</span> <span class="ruby-operator">&gt;</span> <span class="ruby-value">0</span>
325
+ 302: <span class="ruby-comment cmt"># create a indices array with the position of each value of
326
+ 303: <span class="ruby-comment cmt"># given assignments.
327
+ 304: <span class="ruby-identifier">givens_assignments</span>.<span class="ruby-identifier">length</span>.<span class="ruby-identifier">times</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">i</span><span class="ruby-operator">|</span>
328
+ 305: <span class="ruby-identifier">assignment</span> = <span class="ruby-identifier">givens_assignments</span>[<span class="ruby-identifier">i</span>]
329
+ 306: <span class="ruby-identifier">indices</span>[<span class="ruby-identifier">i</span>] = <span class="ruby-ivar">@givens</span>[<span class="ruby-identifier">i</span>].<span class="ruby-identifier">outcomes</span>.<span class="ruby-identifier">index</span>(<span class="ruby-identifier">assignment</span>)
330
+ 307: }
331
+ 308:
332
+ 309: <span class="ruby-comment cmt"># create a array with the number of possible values each
333
+ 310: <span class="ruby-comment cmt"># given node and this node itself can have ( node.outcomes.length )
334
+ 311: <span class="ruby-comment cmt"># plus all next nodes.
335
+ 312: <span class="ruby-identifier">x</span>[<span class="ruby-identifier">givens_assignments</span>.<span class="ruby-identifier">length</span><span class="ruby-operator">-</span><span class="ruby-value">1</span>] = <span class="ruby-ivar">@outcomes</span>.<span class="ruby-identifier">length</span>
336
+ 313: (<span class="ruby-identifier">givens_assignments</span>.<span class="ruby-identifier">length</span><span class="ruby-operator">-</span><span class="ruby-value">2</span>).<span class="ruby-identifier">downto</span>(<span class="ruby-value">0</span>) { <span class="ruby-operator">|</span><span class="ruby-identifier">j</span><span class="ruby-operator">|</span>
337
+ 314: <span class="ruby-identifier">x</span>[<span class="ruby-identifier">j</span>] = <span class="ruby-identifier">x</span>[<span class="ruby-identifier">j</span><span class="ruby-operator">+</span><span class="ruby-value">1</span>] <span class="ruby-operator">*</span> <span class="ruby-ivar">@givens</span>[<span class="ruby-identifier">j</span><span class="ruby-operator">+</span><span class="ruby-value">1</span>].<span class="ruby-identifier">outcomes</span>.<span class="ruby-identifier">length</span>
338
+ 315: }
339
+ 316:
340
+ 317: <span class="ruby-comment cmt"># to get the index, sum for each assignment the
341
+ 318: <span class="ruby-comment cmt"># product of each given assignment outcomes size
342
+ 319: <span class="ruby-comment cmt"># by its value index.
343
+ 320: <span class="ruby-identifier">givens_assignments</span>.<span class="ruby-identifier">length</span>.<span class="ruby-identifier">times</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">i</span><span class="ruby-operator">|</span>
344
+ 321: <span class="ruby-identifier">index</span> <span class="ruby-operator">+=</span> <span class="ruby-identifier">x</span>[<span class="ruby-identifier">i</span>] <span class="ruby-operator">*</span> <span class="ruby-identifier">indices</span>[<span class="ruby-identifier">i</span>]
345
+ 322: }
346
+ 323: <span class="ruby-keyword kw">end</span>
347
+ 324:
348
+ 325: <span class="ruby-identifier">index</span> <span class="ruby-operator">+=</span> <span class="ruby-ivar">@outcomes</span>.<span class="ruby-identifier">index</span>(<span class="ruby-identifier">node_assignment</span>)
349
+ 326:
350
+ 327: <span class="ruby-keyword kw">return</span> <span class="ruby-identifier">index</span>
351
+ 328: <span class="ruby-keyword kw">end</span>
352
+ </pre>
353
+ </div>
354
+ </div>
355
+ </div>
356
+ <div class="method">
357
+ <div class="title">
358
+ <a name="M000047"></a><b>get_table_size</b>()
359
+ </div>
360
+ <div class="description">
361
+ <p>
362
+ returns the number of cells that conditional probability table ( CPT )
363
+ haves.
364
+ </p>
365
+ </div>
366
+ <div class="sourcecode">
367
+ <p class="source-link">[ <a href="javascript:toggleSource('M000047_source')" id="l_M000047_source">show source</a> ]</p>
368
+ <div id="M000047_source" class="dyn-source">
369
+ <pre>
370
+ <span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 264</span>
371
+ 264: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">get_table_size</span>
372
+ 265: <span class="ruby-identifier">num</span> = <span class="ruby-ivar">@outcomes</span>.<span class="ruby-identifier">size</span>
373
+ 266: <span class="ruby-ivar">@givens</span>.<span class="ruby-identifier">each</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">given</span><span class="ruby-operator">|</span> <span class="ruby-identifier">num</span> = <span class="ruby-identifier">num</span> <span class="ruby-operator">*</span> <span class="ruby-identifier">given</span>.<span class="ruby-identifier">outcomes</span>.<span class="ruby-identifier">size</span> }
374
+ 267: <span class="ruby-keyword kw">return</span> <span class="ruby-identifier">num</span>
375
+ 268: <span class="ruby-keyword kw">end</span>
376
+ </pre>
377
+ </div>
378
+ </div>
379
+ </div>
380
+ <div class="method">
381
+ <div class="title">
382
+ <a name="M000040"></a><b>num_parents</b>()
383
+ </div>
384
+ <div class="description">
385
+ <p>
386
+ Return the number of parents
387
+ </p>
388
+ </div>
389
+ <div class="sourcecode">
390
+ <p class="source-link">[ <a href="javascript:toggleSource('M000040_source')" id="l_M000040_source">show source</a> ]</p>
391
+ <div id="M000040_source" class="dyn-source">
392
+ <pre>
393
+ <span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 212</span>
394
+ 212: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">num_parents</span>
395
+ 213: <span class="ruby-identifier">parents</span>.<span class="ruby-identifier">size</span>
396
+ 214: <span class="ruby-keyword kw">end</span>
397
+ </pre>
398
+ </div>
399
+ </div>
400
+ </div>
401
+ <div class="method">
402
+ <div class="title">
403
+ <a name="M000038"></a><b>parents</b>()
404
+ </div>
405
+ <div class="description">
406
+ <p>
407
+ Return node parents
408
+ </p>
409
+ </div>
410
+ <div class="sourcecode">
411
+ <p class="source-link">[ <a href="javascript:toggleSource('M000038_source')" id="l_M000038_source">show source</a> ]</p>
412
+ <div id="M000038_source" class="dyn-source">
413
+ <pre>
414
+ <span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 202</span>
415
+ 202: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">parents</span>
416
+ 203: <span class="ruby-keyword kw">return</span> <span class="ruby-ivar">@givens</span>
417
+ 204: <span class="ruby-keyword kw">end</span>
418
+ </pre>
419
+ </div>
420
+ </div>
421
+ </div>
422
+ <div class="method">
423
+ <div class="title">
424
+ <a name="M000046"></a><b>parents_assignments</b>()
425
+ </div>
426
+ <div class="sourcecode">
427
+ <p class="source-link">[ <a href="javascript:toggleSource('M000046_source')" id="l_M000046_source">show source</a> ]</p>
428
+ <div id="M000046_source" class="dyn-source">
429
+ <pre>
430
+ <span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 258</span>
431
+ 258: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">parents_assignments</span>
432
+ 259: <span class="ruby-identifier">parents</span>.<span class="ruby-identifier">collect</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">p</span><span class="ruby-operator">|</span> <span class="ruby-identifier">p</span>.<span class="ruby-identifier">value</span> }
433
+ 260: <span class="ruby-keyword kw">end</span>
434
+ </pre>
435
+ </div>
436
+ </div>
437
+ </div>
438
+ <div class="method">
439
+ <div class="title">
440
+ <a name="M000039"></a><b>relations</b>()
441
+ </div>
442
+ <div class="description">
443
+ <p>
444
+ Return node relations
445
+ </p>
446
+ </div>
447
+ <div class="sourcecode">
448
+ <p class="source-link">[ <a href="javascript:toggleSource('M000039_source')" id="l_M000039_source">show source</a> ]</p>
449
+ <div id="M000039_source" class="dyn-source">
450
+ <pre>
451
+ <span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 207</span>
452
+ 207: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">relations</span>
453
+ 208: <span class="ruby-keyword kw">return</span> <span class="ruby-ivar">@relations</span>
454
+ 209: <span class="ruby-keyword kw">end</span>
455
+ </pre>
456
+ </div>
457
+ </div>
458
+ </div>
459
+ <div class="method">
460
+ <div class="title">
461
+ <a name="M000034"></a><b>rename</b>(new_name)
462
+ </div>
463
+ <div class="description">
464
+ <p>
465
+ Renames a node
466
+ </p>
467
+ </div>
468
+ <div class="sourcecode">
469
+ <p class="source-link">[ <a href="javascript:toggleSource('M000034_source')" id="l_M000034_source">show source</a> ]</p>
470
+ <div id="M000034_source" class="dyn-source">
471
+ <pre>
472
+ <span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 181</span>
473
+ 181: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">rename</span>(<span class="ruby-identifier">new_name</span>)
474
+ 182: <span class="ruby-ivar">@name</span> = <span class="ruby-identifier">new_name</span>
475
+ 183: <span class="ruby-keyword kw">end</span>
476
+ </pre>
477
+ </div>
478
+ </div>
479
+ </div>
480
+ <div class="method">
481
+ <div class="title">
482
+ <a name="M000042"></a><b>root?</b>()
483
+ </div>
484
+ <div class="description">
485
+ <p>
486
+ Returns true if the node is a root node ( doesn&#8217;t have parents ).
487
+ </p>
488
+ </div>
489
+ <div class="sourcecode">
490
+ <p class="source-link">[ <a href="javascript:toggleSource('M000042_source')" id="l_M000042_source">show source</a> ]</p>
491
+ <div id="M000042_source" class="dyn-source">
492
+ <pre>
493
+ <span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 226</span>
494
+ 226: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">root?</span>
495
+ 227: <span class="ruby-keyword kw">return</span> <span class="ruby-keyword kw">true</span> <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">num_parents</span> <span class="ruby-operator">==</span> <span class="ruby-value">0</span>
496
+ 228: <span class="ruby-keyword kw">false</span>
497
+ 229: <span class="ruby-keyword kw">end</span>
498
+ </pre>
499
+ </div>
500
+ </div>
501
+ </div>
502
+ <div class="method">
503
+ <div class="title">
504
+ <a name="M000048"></a><b>set_probability</b>(number, node_assignment, givens_assignments)
505
+ </div>
506
+ <div class="description">
507
+ <p>
508
+ Sets a probability to the node with a node_assignment conditioned to
509
+ given_assignments
510
+ </p>
511
+ <pre>
512
+ P (node = node_assignment | givens = givens_assignments) = number
513
+ </pre>
514
+ </div>
515
+ <div class="sourcecode">
516
+ <p class="source-link">[ <a href="javascript:toggleSource('M000048_source')" id="l_M000048_source">show source</a> ]</p>
517
+ <div id="M000048_source" class="dyn-source">
518
+ <pre>
519
+ <span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 272</span>
520
+ 272: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">set_probability</span>(<span class="ruby-identifier">number</span>, <span class="ruby-identifier">node_assignment</span>, <span class="ruby-identifier">givens_assignments</span>)
521
+ 273: <span class="ruby-ivar">@table</span>[<span class="ruby-identifier">get_table_index</span>(<span class="ruby-identifier">node_assignment</span>, <span class="ruby-identifier">givens_assignments</span>)] = <span class="ruby-identifier">number</span>
522
+ 274: <span class="ruby-keyword kw">end</span>
523
+ </pre>
524
+ </div>
525
+ </div>
526
+ </div>
527
+ <div class="method">
528
+ <div class="title">
529
+ <a name="M000045"></a><b>set_probability_table</b>(givens, table)
530
+ </div>
531
+ <div class="description">
532
+ <p>
533
+ If givens don&#8217;t exist, it adds them
534
+ </p>
535
+ <p>
536
+ if givens is nil, then internal givens is assumed table must have
537
+ probability values in order like BAD!!! [g0=pos0 &amp; g1=pos0 &amp;
538
+ &#8230; &amp; node_value=pos0, &#8230;, g0=pos0 &amp; g1=pos0 &amp; &#8230;
539
+ &amp; node_value=posN,
540
+ </p>
541
+ </div>
542
+ <div class="sourcecode">
543
+ <p class="source-link">[ <a href="javascript:toggleSource('M000045_source')" id="l_M000045_source">show source</a> ]</p>
544
+ <div id="M000045_source" class="dyn-source">
545
+ <pre>
546
+ <span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 246</span>
547
+ 246: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">set_probability_table</span> (<span class="ruby-identifier">givens</span>, <span class="ruby-identifier">table</span>)
548
+ 247: <span class="ruby-comment cmt"># perhaps we should do some error checking on the table entries here?
549
+ 248: <span class="ruby-ivar">@table_is_a_proc</span> = (<span class="ruby-identifier">table</span>.<span class="ruby-identifier">class</span> <span class="ruby-operator">!=</span> <span class="ruby-constant">Array</span>)
550
+ 249: <span class="ruby-ivar">@givens</span> = <span class="ruby-identifier">givens</span> <span class="ruby-keyword kw">if</span> <span class="ruby-operator">!</span><span class="ruby-identifier">givens</span>.<span class="ruby-identifier">nil?</span>
551
+ 250:
552
+ 251: <span class="ruby-identifier">raise</span> <span class="ruby-value str">&quot;Error table incorrect number of positions (&quot;</span> \
553
+ 252: <span class="ruby-operator">+</span> <span class="ruby-identifier">table</span>.<span class="ruby-identifier">size</span>.<span class="ruby-identifier">to_s</span> <span class="ruby-operator">+</span> <span class="ruby-value str">&quot; of &quot;</span> <span class="ruby-operator">+</span> <span class="ruby-keyword kw">self</span>.<span class="ruby-identifier">get_table_size</span>.<span class="ruby-identifier">to_s</span> \
554
+ 253: <span class="ruby-operator">+</span> <span class="ruby-value str">&quot;)&quot;</span> <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">table</span>.<span class="ruby-identifier">size</span> <span class="ruby-operator">!=</span> <span class="ruby-keyword kw">self</span>.<span class="ruby-identifier">get_table_size</span>
555
+ 254:
556
+ 255: <span class="ruby-ivar">@table</span> = <span class="ruby-identifier">table</span>
557
+ 256: <span class="ruby-keyword kw">end</span>
558
+ </pre>
559
+ </div>
560
+ </div>
561
+ </div>
562
+ <div class="method">
563
+ <div class="title">
564
+ <a name="M000036"></a><b>set_value</b>(value)
565
+ </div>
566
+ <div class="sourcecode">
567
+ <p class="source-link">[ <a href="javascript:toggleSource('M000036_source')" id="l_M000036_source">show source</a> ]</p>
568
+ <div id="M000036_source" class="dyn-source">
569
+ <pre>
570
+ <span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 193</span>
571
+ 193: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">set_value</span>(<span class="ruby-identifier">value</span>)
572
+ 194: <span class="ruby-ivar">@value</span> = <span class="ruby-identifier">value</span>
573
+ 195: <span class="ruby-keyword kw">end</span>
574
+ </pre>
575
+ </div>
576
+ </div>
577
+ </div>
578
+ <div class="method">
579
+ <div class="title">
580
+ <a name="M000044"></a><b>to_s</b>()
581
+ </div>
582
+ <div class="sourcecode">
583
+ <p class="source-link">[ <a href="javascript:toggleSource('M000044_source')" id="l_M000044_source">show source</a> ]</p>
584
+ <div id="M000044_source" class="dyn-source">
585
+ <pre>
586
+ <span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 236</span>
587
+ 236: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">to_s</span>
588
+ 237: <span class="ruby-keyword kw">return</span> <span class="ruby-identifier">name</span> <span class="ruby-operator">+</span> (<span class="ruby-identifier">value</span>.<span class="ruby-identifier">nil?</span> <span class="ruby-value">? </span><span class="ruby-value str">&quot;&quot;</span> <span class="ruby-operator">:</span> (<span class="ruby-value str">&quot; = &quot;</span> <span class="ruby-operator">+</span> <span class="ruby-identifier">value</span>.<span class="ruby-identifier">to_s</span>))
589
+ 238: <span class="ruby-keyword kw">end</span>
590
+ </pre>
591
+ </div>
592
+ </div>
593
+ </div>
594
+ </div>
595
+
596
+ </div>
597
+
598
+ <script src="http://www.google-analytics.com/urchin.js" type="text/javascript">
599
+ </script>
600
+ <script type="text/javascript">
601
+ _uacct = "UA-262540-7";
602
+ urchinTracker();
603
+ </script>
604
+ </body>
477
605
  </html>