bn4r 0.1.2 → 0.9.0
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- data/CHANGELOG +15 -1
- data/README +9 -2
- data/doc/classes/BNTPGFromPositiveNegativeRelations.html +184 -171
- data/doc/classes/BNTPGFromPositiveNegativeRelations.src/M000031.html +20 -20
- data/doc/classes/BNTPGFromPositiveNegativeRelations.src/M000032.html +15 -15
- data/doc/classes/BayesNet.html +986 -560
- data/doc/classes/BayesNet.src/M000003.html +19 -17
- data/doc/classes/BayesNet.src/M000004.html +34 -16
- data/doc/classes/BayesNet.src/M000005.html +24 -17
- data/doc/classes/BayesNet.src/M000006.html +18 -18
- data/doc/classes/BayesNet.src/M000007.html +21 -17
- data/doc/classes/BayesNet.src/M000008.html +17 -19
- data/doc/classes/BayesNet.src/M000009.html +17 -18
- data/doc/classes/BayesNet.src/M000010.html +18 -17
- data/doc/classes/BayesNet.src/M000011.html +17 -22
- data/doc/classes/BayesNet.src/M000012.html +17 -24
- data/doc/classes/BayesNet.src/M000013.html +17 -26
- data/doc/classes/BayesNet.src/M000014.html +20 -42
- data/doc/classes/BayesNet.src/M000015.html +18 -33
- data/doc/classes/BayesNet.src/M000016.html +17 -38
- data/doc/classes/BayesNet.src/M000017.html +17 -37
- data/doc/classes/BayesNet.src/M000018.html +19 -32
- data/doc/classes/BayesNet.src/M000019.html +18 -19
- data/doc/classes/BayesNet.src/M000020.html +17 -35
- data/doc/classes/BayesNet.src/M000021.html +22 -52
- data/doc/classes/BayesNet.src/M000022.html +22 -16
- data/doc/classes/BayesNet.src/M000023.html +24 -17
- data/doc/classes/BayesNet.src/M000024.html +30 -16
- data/doc/classes/BayesNet.src/M000025.html +42 -18
- data/doc/classes/BayesNet.src/M000026.html +32 -16
- data/doc/classes/BayesNet.src/M000027.html +38 -19
- data/doc/classes/BayesNet.src/M000028.html +42 -18
- data/doc/classes/BayesNet.src/M000029.html +32 -17
- data/doc/classes/BayesNet.src/M000030.html +52 -22
- data/doc/classes/BayesNetNode.html +604 -476
- data/doc/classes/BayesNetNode.src/M000033.html +21 -17
- data/doc/classes/BayesNetNode.src/M000034.html +17 -17
- data/doc/classes/BayesNetNode.src/M000035.html +20 -25
- data/doc/classes/BayesNetNode.src/M000036.html +17 -17
- data/doc/classes/BayesNetNode.src/M000037.html +17 -19
- data/doc/classes/BayesNetNode.src/M000038.html +17 -17
- data/doc/classes/BayesNetNode.src/M000039.html +17 -22
- data/doc/classes/BayesNetNode.src/M000040.html +17 -51
- data/doc/classes/BayesNetNode.src/M000041.html +21 -18
- data/doc/classes/BayesNetNode.src/M000042.html +18 -17
- data/doc/classes/BayesNetNode.src/M000043.html +17 -17
- data/doc/classes/BayesNetNode.src/M000044.html +17 -25
- data/doc/classes/BayesNetNode.src/M000045.html +24 -16
- data/doc/classes/BayesNetNode.src/M000046.html +17 -19
- data/doc/classes/BayesNetNode.src/M000047.html +19 -17
- data/doc/classes/BayesNetNode.src/M000048.html +17 -22
- data/doc/classes/BayesNetNode.src/M000049.html +23 -51
- data/doc/classes/BayesNetNode.src/M000050.html +51 -21
- data/doc/classes/BnTableProbabilitiesGenerator.html +122 -142
- data/doc/classes/BnTableProbabilitiesGenerator.src/{M000036.html → M000051.html} +15 -15
- data/doc/created.rid +1 -1
- data/doc/files/README.html +267 -264
- data/doc/files/README_es.html +271 -0
- data/doc/files/lib/bn4r/bn_algorithms_rb.html +125 -130
- data/doc/files/lib/bn4r/bn_export_rb.html +119 -124
- data/doc/files/lib/bn4r/bn_import_rb.html +133 -144
- data/doc/files/lib/bn4r/bn_rb.html +124 -134
- data/doc/files/lib/bn4r/bn_table_probabilities_rb.html +165 -140
- data/doc/files/lib/bn4r/bn_table_probabilities_rb.src/M000001.html +15 -15
- data/doc/files/lib/bn4r/bn_table_probabilities_rb.src/M000002.html +26 -0
- data/doc/files/lib/bn4r/version_rb.html +97 -100
- data/doc/files/lib/bn4r_rb.html +108 -113
- data/doc/fr_class_index.html +49 -30
- data/doc/fr_file_index.html +54 -34
- data/doc/fr_method_index.html +96 -67
- data/doc/index.html +25 -23
- data/doc/rdoc-style.css +175 -208
- data/lib/bn4r/bn.rb +76 -5
- data/lib/bn4r/bn_algorithms.rb +13 -3
- data/lib/bn4r/bn_export.rb +29 -15
- data/lib/bn4r/bn_table_probabilities.rb +10 -0
- data/lib/bn4r/version.rb +2 -2
- data/test/bn4r_test.rb +104 -0
- data/test/test_helper.rb +1 -0
- metadata +15 -393
- data/doc/classes/BNTPGFromPositiveNegativeRelations.src/M000018.html +0 -41
- data/doc/classes/BNTPGFromPositiveNegativeRelations.src/M000019.html +0 -23
- data/doc/classes/BNTPGFromPositiveNegativeRelations.src/M000021.html +0 -41
- data/doc/classes/BNTPGFromPositiveNegativeRelations.src/M000022.html +0 -41
- data/doc/classes/BNTPGFromPositiveNegativeRelations.src/M000023.html +0 -23
- data/doc/classes/BNTPGFromPositiveNegativeRelations.src/M000143.html +0 -41
- data/doc/classes/BNTPGFromPositiveNegativeRelations.src/M000144.html +0 -23
- data/doc/classes/BNTPGFromPositiveNegativeRelations.src/M000145.html +0 -41
- data/doc/classes/BNTPGFromPositiveNegativeRelations.src/M000146.html +0 -23
- data/doc/classes/BayesNet.src/M000001.html +0 -22
- data/doc/classes/BayesNet.src/M000002.html +0 -25
- data/doc/classes/BayesNet.src/M000091.html +0 -25
- data/doc/classes/BayesNet.src/M000092.html +0 -18
- data/doc/classes/BayesNet.src/M000093.html +0 -18
- data/doc/classes/BayesNet.src/M000094.html +0 -18
- data/doc/classes/BayesNet.src/M000095.html +0 -19
- data/doc/classes/BayesNet.src/M000096.html +0 -18
- data/doc/classes/BayesNet.src/M000097.html +0 -20
- data/doc/classes/BayesNet.src/M000098.html +0 -19
- data/doc/classes/BayesNet.src/M000099.html +0 -18
- data/doc/classes/BayesNet.src/M000100.html +0 -23
- data/doc/classes/BayesNet.src/M000101.html +0 -25
- data/doc/classes/BayesNet.src/M000102.html +0 -27
- data/doc/classes/BayesNet.src/M000103.html +0 -43
- data/doc/classes/BayesNet.src/M000104.html +0 -34
- data/doc/classes/BayesNet.src/M000105.html +0 -39
- data/doc/classes/BayesNet.src/M000106.html +0 -38
- data/doc/classes/BayesNet.src/M000107.html +0 -33
- data/doc/classes/BayesNet.src/M000108.html +0 -18
- data/doc/classes/BayesNet.src/M000109.html +0 -35
- data/doc/classes/BayesNet.src/M000110.html +0 -22
- data/doc/classes/BayesNet.src/M000111.html +0 -18
- data/doc/classes/BayesNet.src/M000112.html +0 -18
- data/doc/classes/BayesNet.src/M000113.html +0 -18
- data/doc/classes/BayesNet.src/M000114.html +0 -19
- data/doc/classes/BayesNet.src/M000115.html +0 -18
- data/doc/classes/BayesNet.src/M000116.html +0 -20
- data/doc/classes/BayesNet.src/M000117.html +0 -19
- data/doc/classes/BayesNet.src/M000118.html +0 -18
- data/doc/classes/BayesNet.src/M000119.html +0 -23
- data/doc/classes/BayesNet.src/M000120.html +0 -25
- data/doc/classes/BayesNet.src/M000121.html +0 -27
- data/doc/classes/BayesNet.src/M000122.html +0 -43
- data/doc/classes/BayesNet.src/M000123.html +0 -33
- data/doc/classes/BayesNet.src/M000124.html +0 -39
- data/doc/classes/BayesNet.src/M000125.html +0 -38
- data/doc/classes/BayesNet.src/M000126.html +0 -33
- data/doc/classes/BayesNetNode.src/M000020.html +0 -22
- data/doc/classes/BayesNetNode.src/M000021.html +0 -21
- data/doc/classes/BayesNetNode.src/M000022.html +0 -18
- data/doc/classes/BayesNetNode.src/M000023.html +0 -22
- data/doc/classes/BayesNetNode.src/M000024.html +0 -22
- data/doc/classes/BayesNetNode.src/M000025.html +0 -21
- data/doc/classes/BayesNetNode.src/M000026.html +0 -18
- data/doc/classes/BayesNetNode.src/M000027.html +0 -18
- data/doc/classes/BayesNetNode.src/M000028.html +0 -18
- data/doc/classes/BayesNetNode.src/M000029.html +0 -18
- data/doc/classes/BayesNetNode.src/M000030.html +0 -18
- data/doc/classes/BayesNetNode.src/M000031.html +0 -19
- data/doc/classes/BayesNetNode.src/M000032.html +0 -19
- data/doc/classes/BayesNetNode.src/M000051.html +0 -21
- data/doc/classes/BayesNetNode.src/M000052.html +0 -18
- data/doc/classes/BayesNetNode.src/M000053.html +0 -18
- data/doc/classes/BayesNetNode.src/M000054.html +0 -18
- data/doc/classes/BayesNetNode.src/M000055.html +0 -18
- data/doc/classes/BayesNetNode.src/M000056.html +0 -18
- data/doc/classes/BayesNetNode.src/M000057.html +0 -19
- data/doc/classes/BayesNetNode.src/M000058.html +0 -19
- data/doc/classes/BayesNetNode.src/M000059.html +0 -18
- data/doc/classes/BayesNetNode.src/M000060.html +0 -18
- data/doc/classes/BayesNetNode.src/M000061.html +0 -26
- data/doc/classes/BayesNetNode.src/M000062.html +0 -18
- data/doc/classes/BayesNetNode.src/M000063.html +0 -20
- data/doc/classes/BayesNetNode.src/M000064.html +0 -18
- data/doc/classes/BayesNetNode.src/M000065.html +0 -23
- data/doc/classes/BayesNetNode.src/M000066.html +0 -52
- data/doc/classes/BayesNetNode.src/M000147.html +0 -22
- data/doc/classes/BayesNetNode.src/M000148.html +0 -21
- data/doc/classes/BayesNetNode.src/M000149.html +0 -18
- data/doc/classes/BayesNetNode.src/M000150.html +0 -18
- data/doc/classes/BayesNetNode.src/M000151.html +0 -18
- data/doc/classes/BayesNetNode.src/M000152.html +0 -18
- data/doc/classes/BayesNetNode.src/M000153.html +0 -18
- data/doc/classes/BayesNetNode.src/M000154.html +0 -19
- data/doc/classes/BayesNetNode.src/M000155.html +0 -19
- data/doc/classes/BayesNetNode.src/M000156.html +0 -18
- data/doc/classes/BayesNetNode.src/M000157.html +0 -18
- data/doc/classes/BayesNetNode.src/M000158.html +0 -26
- data/doc/classes/BayesNetNode.src/M000159.html +0 -18
- data/doc/classes/BayesNetNode.src/M000160.html +0 -20
- data/doc/classes/BayesNetNode.src/M000161.html +0 -18
- data/doc/classes/BayesNetNode.src/M000162.html +0 -23
- data/doc/classes/BayesNetNode.src/M000163.html +0 -52
- data/doc/classes/BayesNetNode.src/M000164.html +0 -22
- data/doc/classes/BayesNetNode.src/M000165.html +0 -21
- data/doc/classes/BayesNetNode.src/M000166.html +0 -18
- data/doc/classes/BayesNetNode.src/M000167.html +0 -18
- data/doc/classes/BayesNetNode.src/M000168.html +0 -18
- data/doc/classes/BayesNetNode.src/M000169.html +0 -18
- data/doc/classes/BayesNetNode.src/M000170.html +0 -18
- data/doc/classes/BayesNetNode.src/M000171.html +0 -19
- data/doc/classes/BayesNetNode.src/M000172.html +0 -18
- data/doc/classes/BayesNetNode.src/M000173.html +0 -18
- data/doc/classes/BayesNetNode.src/M000174.html +0 -26
- data/doc/classes/BayesNetNode.src/M000175.html +0 -18
- data/doc/classes/BayesNetNode.src/M000176.html +0 -20
- data/doc/classes/BayesNetNode.src/M000177.html +0 -18
- data/doc/classes/BayesNetNode.src/M000178.html +0 -23
- data/doc/classes/BayesNetNode.src/M000179.html +0 -52
- data/doc/classes/Bn4rTest.html +0 -549
- data/doc/classes/Bn4rTest.src/M000180.html +0 -17
- data/doc/classes/Bn4rTest.src/M000181.html +0 -21
- data/doc/classes/Bn4rTest.src/M000182.html +0 -21
- data/doc/classes/Bn4rTest.src/M000183.html +0 -34
- data/doc/classes/Bn4rTest.src/M000184.html +0 -27
- data/doc/classes/Bn4rTest.src/M000185.html +0 -23
- data/doc/classes/Bn4rTest.src/M000186.html +0 -42
- data/doc/classes/Bn4rTest.src/M000187.html +0 -39
- data/doc/classes/Bn4rTest.src/M000188.html +0 -25
- data/doc/classes/Bn4rTest.src/M000189.html +0 -45
- data/doc/classes/Bn4rTest.src/M000190.html +0 -32
- data/doc/classes/Bn4rTest.src/M000191.html +0 -32
- data/doc/classes/Bn4rTest.src/M000192.html +0 -45
- data/doc/classes/Bn4rTest.src/M000193.html +0 -41
- data/doc/classes/Bn4rTest.src/M000194.html +0 -42
- data/doc/classes/Bn4rTest.src/M000195.html +0 -17
- data/doc/classes/Bn4rTest.src/M000196.html +0 -21
- data/doc/classes/Bn4rTest.src/M000197.html +0 -21
- data/doc/classes/Bn4rTest.src/M000198.html +0 -34
- data/doc/classes/Bn4rTest.src/M000199.html +0 -27
- data/doc/classes/Bn4rTest.src/M000200.html +0 -23
- data/doc/classes/Bn4rTest.src/M000201.html +0 -42
- data/doc/classes/Bn4rTest.src/M000202.html +0 -39
- data/doc/classes/Bn4rTest.src/M000203.html +0 -25
- data/doc/classes/Bn4rTest.src/M000204.html +0 -45
- data/doc/classes/Bn4rTest.src/M000205.html +0 -32
- data/doc/classes/Bn4rTest.src/M000206.html +0 -32
- data/doc/classes/BnTableProbabilitiesGenerator.src/M000040.html +0 -18
- data/doc/classes/BnTableProbabilitiesGenerator.src/M000041.html +0 -18
- data/doc/classes/BnTableProbabilitiesGenerator.src/M000067.html +0 -18
- data/doc/classes/BnTableProbabilitiesGenerator.src/M000207.html +0 -18
- data/doc/classes/BnTableProbabilitiesGenerator.src/M000208.html +0 -18
- data/doc/classes/ConfigTable.html +0 -500
- data/doc/classes/ConfigTable.src/M000007.html +0 -25
- data/doc/classes/ConfigTable.src/M000008.html +0 -18
- data/doc/classes/ConfigTable.src/M000009.html +0 -18
- data/doc/classes/ConfigTable.src/M000010.html +0 -18
- data/doc/classes/ConfigTable.src/M000011.html +0 -18
- data/doc/classes/ConfigTable.src/M000012.html +0 -18
- data/doc/classes/ConfigTable.src/M000013.html +0 -18
- data/doc/classes/ConfigTable.src/M000014.html +0 -18
- data/doc/classes/ConfigTable.src/M000015.html +0 -18
- data/doc/classes/ConfigTable.src/M000016.html +0 -19
- data/doc/classes/ConfigTable.src/M000017.html +0 -21
- data/doc/classes/ConfigTable.src/M000018.html +0 -20
- data/doc/classes/ConfigTable.src/M000019.html +0 -18
- data/doc/classes/ConfigTable.src/M000020.html +0 -25
- data/doc/classes/ConfigTable.src/M000021.html +0 -23
- data/doc/classes/ConfigTable.src/M000022.html +0 -20
- data/doc/classes/ConfigTable.src/M000023.html +0 -20
- data/doc/classes/ConfigTable.src/M000024.html +0 -23
- data/doc/classes/ConfigTable.src/M000025.html +0 -19
- data/doc/classes/ConfigTable.src/M000026.html +0 -18
- data/doc/classes/ConfigTable.src/M000027.html +0 -18
- data/doc/classes/ConfigTable/BoolItem.html +0 -154
- data/doc/classes/ConfigTable/BoolItem.src/M000028.html +0 -18
- data/doc/classes/ConfigTable/BoolItem.src/M000029.html +0 -18
- data/doc/classes/ConfigTable/ExecItem.html +0 -201
- data/doc/classes/ConfigTable/ExecItem.src/M000047.html +0 -20
- data/doc/classes/ConfigTable/ExecItem.src/M000048.html +0 -18
- data/doc/classes/ConfigTable/ExecItem.src/M000049.html +0 -18
- data/doc/classes/ConfigTable/ExecItem.src/M000050.html +0 -18
- data/doc/classes/ConfigTable/ExecItem.src/M000051.html +0 -22
- data/doc/classes/ConfigTable/Item.html +0 -250
- data/doc/classes/ConfigTable/Item.src/M000054.html +0 -22
- data/doc/classes/ConfigTable/Item.src/M000055.html +0 -18
- data/doc/classes/ConfigTable/Item.src/M000056.html +0 -18
- data/doc/classes/ConfigTable/Item.src/M000057.html +0 -18
- data/doc/classes/ConfigTable/Item.src/M000058.html +0 -18
- data/doc/classes/ConfigTable/Item.src/M000059.html +0 -18
- data/doc/classes/ConfigTable/MetaConfigEnvironment.html +0 -325
- data/doc/classes/ConfigTable/MetaConfigEnvironment.src/M000034.html +0 -19
- data/doc/classes/ConfigTable/MetaConfigEnvironment.src/M000035.html +0 -18
- data/doc/classes/ConfigTable/MetaConfigEnvironment.src/M000036.html +0 -18
- data/doc/classes/ConfigTable/MetaConfigEnvironment.src/M000037.html +0 -18
- data/doc/classes/ConfigTable/MetaConfigEnvironment.src/M000038.html +0 -18
- data/doc/classes/ConfigTable/MetaConfigEnvironment.src/M000039.html +0 -18
- data/doc/classes/ConfigTable/MetaConfigEnvironment.src/M000040.html +0 -18
- data/doc/classes/ConfigTable/MetaConfigEnvironment.src/M000041.html +0 -18
- data/doc/classes/ConfigTable/MetaConfigEnvironment.src/M000042.html +0 -18
- data/doc/classes/ConfigTable/MetaConfigEnvironment.src/M000043.html +0 -18
- data/doc/classes/ConfigTable/MetaConfigEnvironment.src/M000044.html +0 -18
- data/doc/classes/ConfigTable/MetaConfigEnvironment.src/M000045.html +0 -19
- data/doc/classes/ConfigTable/MetaConfigEnvironment.src/M000046.html +0 -19
- data/doc/classes/ConfigTable/PackageSelectionItem.html +0 -169
- data/doc/classes/ConfigTable/PackageSelectionItem.src/M000032.html +0 -19
- data/doc/classes/ConfigTable/PackageSelectionItem.src/M000033.html +0 -18
- data/doc/classes/ConfigTable/PathItem.html +0 -139
- data/doc/classes/ConfigTable/PathItem.src/M000031.html +0 -18
- data/doc/classes/ConfigTable/ProgramItem.html +0 -139
- data/doc/classes/ConfigTable/ProgramItem.src/M000030.html +0 -18
- data/doc/classes/ConfigTable/SelectItem.html +0 -156
- data/doc/classes/ConfigTable/SelectItem.src/M000052.html +0 -19
- data/doc/classes/ConfigTable/SelectItem.src/M000053.html +0 -18
- data/doc/classes/Enumerable.html +0 -118
- data/doc/classes/Errno.html +0 -111
- data/doc/classes/Errno/ENOTEMPTY.html +0 -111
- data/doc/classes/File.html +0 -166
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- data/doc/classes/File.src/M000277.html +0 -20
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- data/doc/classes/FileOperations.html +0 -375
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- data/doc/classes/FileOperations.src/M000305.html +0 -20
- data/doc/classes/FileOperations.src/M000306.html +0 -20
- data/doc/classes/HookScriptAPI.html +0 -308
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- data/doc/classes/HookScriptAPI.src/M000281.html +0 -18
- data/doc/classes/HookScriptAPI.src/M000282.html +0 -18
- data/doc/classes/HookScriptAPI.src/M000283.html +0 -18
- data/doc/classes/HookScriptAPI.src/M000284.html +0 -18
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- data/doc/classes/HookScriptAPI.src/M000286.html +0 -18
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- data/doc/classes/HookScriptAPI.src/M000288.html +0 -20
- data/doc/classes/HookScriptAPI.src/M000289.html +0 -20
- data/doc/classes/HookScriptAPI.src/M000290.html +0 -20
- data/doc/classes/Installer.html +0 -1148
- data/doc/classes/Installer.src/M000209.html +0 -21
- data/doc/classes/Installer.src/M000210.html +0 -18
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<?xml version="1.0" encoding="iso-8859-1"?>
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<title>Class: BayesNet</title>
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+
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+
</head>
|
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|
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|
+
<body>
|
|
53
|
+
<table width="100%" border='0' cellpadding='0' cellspacing='0' class='banner'><tr>
|
|
54
|
+
<td class="file-title"><span class="file-title-prefix">Class</span><br />BayesNet</td>
|
|
55
|
+
<td align="right">
|
|
56
|
+
<table cellspacing=0 cellpadding=2>
|
|
57
|
+
<tr valign="top">
|
|
58
|
+
<td>In:</td>
|
|
59
|
+
<td>
|
|
60
|
+
<a href="../files/lib/bn4r/bn_export_rb.html">lib/bn4r/bn_export.rb</a>
|
|
61
|
+
<a href="../files/lib/bn4r/bn_rb.html">lib/bn4r/bn.rb</a>
|
|
62
|
+
<a href="../files/lib/bn4r/bn_algorithms_rb.html">lib/bn4r/bn_algorithms.rb</a>
|
|
63
|
+
<a href="../files/lib/bn4r/bn_import_rb.html">lib/bn4r/bn_import.rb</a>
|
|
64
|
+
</td>
|
|
65
|
+
</tr>
|
|
66
|
+
<tr>
|
|
67
|
+
<td>Parent:</td>
|
|
68
|
+
<td>
|
|
69
|
+
DirectedAdjacencyGraph
|
|
70
|
+
</td>
|
|
71
|
+
</tr>
|
|
72
|
+
</table>
|
|
73
|
+
</td>
|
|
74
|
+
</tr>
|
|
75
|
+
</table>
|
|
76
|
+
<!-- banner header -->
|
|
77
|
+
|
|
78
|
+
<div id="bodyContent">
|
|
79
|
+
<div id="content">
|
|
80
|
+
|
|
81
|
+
|
|
82
|
+
|
|
83
|
+
|
|
84
|
+
<div class="sectiontitle">Methods</div>
|
|
85
|
+
<ul>
|
|
86
|
+
<li><a href="#M000005">add_edge</a></li>
|
|
87
|
+
<li><a href="#M000020">all_nodes_with_values?</a></li>
|
|
88
|
+
<li><a href="#M000007">childs</a></li>
|
|
89
|
+
<li><a href="#M000009">clear_values!</a></li>
|
|
90
|
+
<li><a href="#M000030">create_from_xmlbif</a></li>
|
|
91
|
+
<li><a href="#M000017">deep</a></li>
|
|
92
|
+
<li><a href="#M000008">each_child</a></li>
|
|
93
|
+
<li><a href="#M000013">each_leaf</a></li>
|
|
94
|
+
<li><a href="#M000027">enumerate_all</a></li>
|
|
95
|
+
<li><a href="#M000023">enumeration_ask</a></li>
|
|
96
|
+
<li><a href="#M000010">get_variable</a></li>
|
|
97
|
+
<li><a href="#M000029">get_vector_value</a></li>
|
|
98
|
+
<li><a href="#M000018">inference_by_enumeration</a></li>
|
|
99
|
+
<li><a href="#M000012">leafs</a></li>
|
|
100
|
+
<li><a href="#M000026">likelihood_weighting</a></li>
|
|
101
|
+
<li><a href="#M000022">nodes_ordered_by_breath_first_search</a></li>
|
|
102
|
+
<li><a href="#M000021">nodes_ordered_by_dependencies</a></li>
|
|
103
|
+
<li><a href="#M000016">num_parents</a></li>
|
|
104
|
+
<li><a href="#M000019">p_v_cond_parents</a></li>
|
|
105
|
+
<li><a href="#M000024">prior_sample</a></li>
|
|
106
|
+
<li><a href="#M000025">rejection_sampling</a></li>
|
|
107
|
+
<li><a href="#M000006">remove_vertex</a></li>
|
|
108
|
+
<li><a href="#M000015">root?</a></li>
|
|
109
|
+
<li><a href="#M000011">roots</a></li>
|
|
110
|
+
<li><a href="#M000014">siblings</a></li>
|
|
111
|
+
<li><a href="#M000003">to_dot</a></li>
|
|
112
|
+
<li><a href="#M000004">to_xbn</a></li>
|
|
113
|
+
<li><a href="#M000028">weighted_sample</a></li>
|
|
114
|
+
</ul>
|
|
115
|
+
|
|
116
|
+
|
|
117
|
+
|
|
118
|
+
|
|
119
|
+
|
|
120
|
+
|
|
121
|
+
<div class="sectiontitle">Public Instance methods</div>
|
|
122
|
+
<div class="method">
|
|
123
|
+
<div class="title">
|
|
124
|
+
<a name="M000005"></a><b>add_edge</b>(parent, child, tag=nil)
|
|
125
|
+
</div>
|
|
126
|
+
<div class="description">
|
|
127
|
+
<p>
|
|
128
|
+
Adds a directed edge between parent and child BayesNetNodes labeled with
|
|
129
|
+
tag ( if tag is included, othewise the label is nil ).
|
|
130
|
+
</p>
|
|
131
|
+
</div>
|
|
132
|
+
<div class="sourcecode">
|
|
133
|
+
<p class="source-link">[ <a href="javascript:toggleSource('M000005_source')" id="l_M000005_source">show source</a> ]</p>
|
|
134
|
+
<div id="M000005_source" class="dyn-source">
|
|
135
|
+
<pre>
|
|
136
|
+
<span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 27</span>
|
|
137
|
+
27: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">add_edge</span>(<span class="ruby-identifier">parent</span>, <span class="ruby-identifier">child</span>, <span class="ruby-identifier">tag</span>=<span class="ruby-keyword kw">nil</span>)
|
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|
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28: <span class="ruby-identifier">raise</span> <span class="ruby-value str">"Nodes must be of the class BayesNetNodes"</span> <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">parent</span>.<span class="ruby-identifier">class</span> <span class="ruby-operator">!=</span> <span class="ruby-constant">BayesNetNode</span> <span class="ruby-keyword kw">or</span> <span class="ruby-identifier">child</span>.<span class="ruby-identifier">class</span> <span class="ruby-operator">!=</span> <span class="ruby-constant">BayesNetNode</span>
|
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|
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29: <span class="ruby-identifier">raise</span> <span class="ruby-value str">"Self relations not allowed in BayesNet"</span> <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">parent</span> <span class="ruby-operator">==</span> <span class="ruby-identifier">child</span>
|
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|
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30: <span class="ruby-identifier">raise</span> <span class="ruby-value str">"Diferent BayesNetNodes with equal name: "</span> <span class="ruby-operator">+</span> <span class="ruby-identifier">parent</span>.<span class="ruby-identifier">name</span> <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">parent</span>.<span class="ruby-identifier">name</span> <span class="ruby-operator">==</span> <span class="ruby-identifier">child</span>.<span class="ruby-identifier">name</span>
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31:
|
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32: <span class="ruby-identifier">edge</span> = <span class="ruby-keyword kw">super</span>(<span class="ruby-identifier">parent</span>, <span class="ruby-identifier">child</span>)
|
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|
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33: <span class="ruby-identifier">child</span>.<span class="ruby-identifier">parents</span> <span class="ruby-operator"><<</span> <span class="ruby-identifier">parent</span> <span class="ruby-keyword kw">unless</span> <span class="ruby-identifier">child</span>.<span class="ruby-identifier">parents</span>.<span class="ruby-identifier">include?</span> <span class="ruby-identifier">parent</span>
|
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34: <span class="ruby-identifier">child</span>.<span class="ruby-identifier">relations</span> <span class="ruby-operator"><<</span> <span class="ruby-identifier">tag</span> <span class="ruby-keyword kw">if</span> <span class="ruby-operator">!</span><span class="ruby-identifier">tag</span>.<span class="ruby-identifier">nil?</span>
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35: <span class="ruby-identifier">edge</span>
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36: <span class="ruby-keyword kw">end</span>
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<a name="M000020"></a><b>all_nodes_with_values?</b>()
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Returns true if all nodes have values.
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<pre>
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<span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 136</span>
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136: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">all_nodes_with_values?</span>
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137: <span class="ruby-identifier">vertices</span>.<span class="ruby-identifier">select</span> {<span class="ruby-operator">|</span><span class="ruby-identifier">v</span><span class="ruby-operator">|</span> <span class="ruby-operator">!</span><span class="ruby-identifier">v</span>.<span class="ruby-identifier">value</span>.<span class="ruby-identifier">nil?</span> }.<span class="ruby-identifier">size</span> <span class="ruby-operator">==</span> <span class="ruby-identifier">vertices</span>.<span class="ruby-identifier">size</span>
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138: <span class="ruby-keyword kw">end</span>
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<a name="M000007"></a><b>childs</b>(v)
|
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Returns an array with childs of given node ( or vertice )
|
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<pre>
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<span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 56</span>
|
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56: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">childs</span>(<span class="ruby-identifier">v</span>)
|
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57: <span class="ruby-keyword kw">begin</span>
|
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58: <span class="ruby-keyword kw">self</span>.<span class="ruby-identifier">adjacent_vertices</span>(<span class="ruby-identifier">v</span>)
|
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59: <span class="ruby-keyword kw">rescue</span> <span class="ruby-constant">RGL</span><span class="ruby-operator">::</span><span class="ruby-constant">NoVertexError</span>
|
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60: []
|
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61: <span class="ruby-keyword kw">end</span>
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62: <span class="ruby-keyword kw">end</span>
|
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</pre>
|
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|
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|
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<div class="title">
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199
|
+
<a name="M000009"></a><b>clear_values!</b>()
|
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|
+
</div>
|
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|
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|
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|
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Clears the value of all BayesNetNodes in Bayes Net.
|
|
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|
+
</p>
|
|
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|
+
</div>
|
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<p class="source-link">[ <a href="javascript:toggleSource('M000009_source')" id="l_M000009_source">show source</a> ]</p>
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<pre>
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|
+
<span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 70</span>
|
|
211
|
+
70: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">clear_values!</span>
|
|
212
|
+
71: <span class="ruby-identifier">vertices</span>.<span class="ruby-identifier">each</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">v</span><span class="ruby-operator">|</span> <span class="ruby-identifier">v</span>.<span class="ruby-identifier">clear_value</span> }
|
|
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|
+
72: <span class="ruby-keyword kw">end</span>
|
|
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|
+
</pre>
|
|
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|
+
</div>
|
|
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+
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|
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+
</div>
|
|
218
|
+
<div class="method">
|
|
219
|
+
<div class="title">
|
|
220
|
+
<a name="M000030"></a><b>create_from_xmlbif</b>(file, bn=self)
|
|
221
|
+
</div>
|
|
222
|
+
<div class="sourcecode">
|
|
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+
<p class="source-link">[ <a href="javascript:toggleSource('M000030_source')" id="l_M000030_source">show source</a> ]</p>
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+
<div id="M000030_source" class="dyn-source">
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+
<pre>
|
|
226
|
+
<span class="ruby-comment cmt"># File lib/bn4r/bn_import.rb, line 26</span>
|
|
227
|
+
26: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">create_from_xmlbif</span>(<span class="ruby-identifier">file</span>, <span class="ruby-identifier">bn</span>=<span class="ruby-keyword kw">self</span>)
|
|
228
|
+
27: <span class="ruby-identifier">doc</span> = <span class="ruby-constant">Document</span>.<span class="ruby-identifier">new</span> <span class="ruby-constant">File</span>.<span class="ruby-identifier">open</span>(<span class="ruby-identifier">file</span>, <span class="ruby-value str">"r"</span>)
|
|
229
|
+
28:
|
|
230
|
+
29: <span class="ruby-comment cmt"># first go through and add the variables
|
|
231
|
+
30: <span class="ruby-identifier">doc</span>.<span class="ruby-identifier">elements</span>.<span class="ruby-identifier">each</span>(<span class="ruby-value str">"BIF/NETWORK/VARIABLE"</span>) { <span class="ruby-operator">|</span><span class="ruby-identifier">variable</span><span class="ruby-operator">|</span>
|
|
232
|
+
31:
|
|
233
|
+
32: <span class="ruby-identifier">name</span> = <span class="ruby-identifier">variable</span>.<span class="ruby-identifier">elements</span>[<span class="ruby-value str">"NAME"</span>]
|
|
234
|
+
33:
|
|
235
|
+
34: <span class="ruby-identifier">outcomes</span> = []
|
|
236
|
+
35: <span class="ruby-identifier">variable</span>.<span class="ruby-identifier">elements</span>.<span class="ruby-identifier">each</span>(<span class="ruby-value str">"OUTCOME"</span>) { <span class="ruby-operator">|</span><span class="ruby-identifier">outcome</span><span class="ruby-operator">|</span>
|
|
237
|
+
36: <span class="ruby-identifier">outcomes</span> <span class="ruby-operator"><<</span> <span class="ruby-identifier">outcome</span>.<span class="ruby-identifier">text</span>
|
|
238
|
+
37: }
|
|
239
|
+
38: <span class="ruby-comment cmt"># transform from text to boolean
|
|
240
|
+
39: <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">outcomes</span>.<span class="ruby-identifier">size</span> <span class="ruby-operator">==</span> <span class="ruby-value">2</span> <span class="ruby-keyword kw">and</span> <span class="ruby-identifier">outcomes</span>.<span class="ruby-identifier">include?</span>(<span class="ruby-value str">"true"</span>) <span class="ruby-keyword kw">and</span> <span class="ruby-identifier">outcomes</span>.<span class="ruby-identifier">include?</span>(<span class="ruby-value str">"false"</span>)
|
|
241
|
+
40: <span class="ruby-identifier">outcomes</span> = <span class="ruby-identifier">outcomes</span>.<span class="ruby-identifier">collect</span> {<span class="ruby-operator">|</span><span class="ruby-identifier">o</span><span class="ruby-operator">|</span> <span class="ruby-identifier">o</span> <span class="ruby-operator">==</span> <span class="ruby-value str">"true"</span>}
|
|
242
|
+
41: <span class="ruby-keyword kw">end</span>
|
|
243
|
+
42: <span class="ruby-identifier">node</span> = <span class="ruby-constant">BayesNetNode</span>.<span class="ruby-identifier">new</span>( <span class="ruby-identifier">name</span>.<span class="ruby-identifier">text</span>, <span class="ruby-identifier">outcomes</span> )
|
|
244
|
+
43: <span class="ruby-identifier">bn</span>.<span class="ruby-identifier">add_vertex</span>(<span class="ruby-identifier">node</span>)
|
|
245
|
+
44: }
|
|
246
|
+
45:
|
|
247
|
+
46: <span class="ruby-comment cmt"># for each variable we list, we will look up
|
|
248
|
+
47: <span class="ruby-comment cmt"># the conditional probability table for it.
|
|
249
|
+
48:
|
|
250
|
+
49: <span class="ruby-identifier">doc</span>.<span class="ruby-identifier">elements</span>.<span class="ruby-identifier">each</span>(<span class="ruby-value str">"BIF/NETWORK/DEFINITION/"</span>) { <span class="ruby-operator">|</span><span class="ruby-identifier">definition</span><span class="ruby-operator">|</span>
|
|
251
|
+
50: <span class="ruby-identifier">node</span> = <span class="ruby-identifier">get_variable</span>( <span class="ruby-identifier">definition</span>.<span class="ruby-identifier">elements</span>[<span class="ruby-value str">"FOR"</span>].<span class="ruby-identifier">text</span> )
|
|
252
|
+
51: <span class="ruby-identifier">givens_array</span> = []
|
|
253
|
+
52: <span class="ruby-identifier">definition</span>.<span class="ruby-identifier">elements</span>.<span class="ruby-identifier">each</span>(<span class="ruby-value str">"GIVEN"</span>) { <span class="ruby-operator">|</span><span class="ruby-identifier">given</span><span class="ruby-operator">|</span>
|
|
254
|
+
53: <span class="ruby-identifier">givens_array</span> <span class="ruby-operator"><<</span> <span class="ruby-identifier">get_variable</span>( <span class="ruby-identifier">given</span>.<span class="ruby-identifier">text</span> )
|
|
255
|
+
54: }
|
|
256
|
+
55:
|
|
257
|
+
56: <span class="ruby-identifier">table</span> = <span class="ruby-identifier">definition</span>.<span class="ruby-identifier">elements</span>[<span class="ruby-value str">"TABLE"</span>].<span class="ruby-identifier">text</span>.<span class="ruby-identifier">split</span>
|
|
258
|
+
57:
|
|
259
|
+
58: <span class="ruby-identifier">givens_array</span>.<span class="ruby-identifier">each</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">g</span><span class="ruby-operator">|</span> <span class="ruby-identifier">bn</span>.<span class="ruby-identifier">add_edge</span>(<span class="ruby-identifier">g</span>, <span class="ruby-identifier">node</span>) }
|
|
260
|
+
59:
|
|
261
|
+
60: <span class="ruby-identifier">node</span>.<span class="ruby-identifier">set_probability_table</span>(<span class="ruby-identifier">givens_array</span>, <span class="ruby-identifier">table</span>)
|
|
262
|
+
61: }
|
|
263
|
+
62: <span class="ruby-identifier">bn</span>
|
|
264
|
+
63: <span class="ruby-keyword kw">end</span>
|
|
265
|
+
</pre>
|
|
266
|
+
</div>
|
|
267
|
+
</div>
|
|
268
|
+
</div>
|
|
269
|
+
<div class="method">
|
|
270
|
+
<div class="title">
|
|
271
|
+
<a name="M000017"></a><b>deep</b>()
|
|
272
|
+
</div>
|
|
273
|
+
<div class="description">
|
|
274
|
+
<p>
|
|
275
|
+
Returns de deep of the bayes net (larger path from a root node to a child
|
|
276
|
+
node).
|
|
277
|
+
</p>
|
|
278
|
+
</div>
|
|
279
|
+
<div class="sourcecode">
|
|
280
|
+
<p class="source-link">[ <a href="javascript:toggleSource('M000017_source')" id="l_M000017_source">show source</a> ]</p>
|
|
281
|
+
<div id="M000017_source" class="dyn-source">
|
|
282
|
+
<pre>
|
|
283
|
+
<span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 116</span>
|
|
284
|
+
116: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">deep</span>
|
|
285
|
+
117: <span class="ruby-identifier">vertices</span>.<span class="ruby-identifier">collect</span> {<span class="ruby-operator">|</span><span class="ruby-identifier">root</span><span class="ruby-operator">|</span> <span class="ruby-identifier">root</span>.<span class="ruby-identifier">deep</span> }.<span class="ruby-identifier">max</span>
|
|
286
|
+
118: <span class="ruby-keyword kw">end</span>
|
|
287
|
+
</pre>
|
|
288
|
+
</div>
|
|
289
|
+
</div>
|
|
290
|
+
</div>
|
|
291
|
+
<div class="method">
|
|
292
|
+
<div class="title">
|
|
293
|
+
<a name="M000008"></a><b>each_child</b>(v) {|child| ...}
|
|
294
|
+
</div>
|
|
295
|
+
<div class="description">
|
|
296
|
+
<p>
|
|
297
|
+
Iterates all the childs of given node ( or vertice )
|
|
298
|
+
</p>
|
|
299
|
+
</div>
|
|
300
|
+
<div class="sourcecode">
|
|
301
|
+
<p class="source-link">[ <a href="javascript:toggleSource('M000008_source')" id="l_M000008_source">show source</a> ]</p>
|
|
302
|
+
<div id="M000008_source" class="dyn-source">
|
|
303
|
+
<pre>
|
|
304
|
+
<span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 65</span>
|
|
305
|
+
65: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">each_child</span>(<span class="ruby-identifier">v</span>)
|
|
306
|
+
66: <span class="ruby-identifier">childs</span>(<span class="ruby-identifier">v</span>).<span class="ruby-identifier">each</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">child</span><span class="ruby-operator">|</span> <span class="ruby-keyword kw">yield</span> <span class="ruby-identifier">child</span> }
|
|
307
|
+
67: <span class="ruby-keyword kw">end</span>
|
|
308
|
+
</pre>
|
|
309
|
+
</div>
|
|
310
|
+
</div>
|
|
311
|
+
</div>
|
|
312
|
+
<div class="method">
|
|
313
|
+
<div class="title">
|
|
314
|
+
<a name="M000013"></a><b>each_leaf</b>() {|leaf| ...}
|
|
315
|
+
</div>
|
|
316
|
+
<div class="description">
|
|
317
|
+
<p>
|
|
318
|
+
Iterates all the leaf nodes ( or vertices )
|
|
319
|
+
</p>
|
|
320
|
+
</div>
|
|
321
|
+
<div class="sourcecode">
|
|
322
|
+
<p class="source-link">[ <a href="javascript:toggleSource('M000013_source')" id="l_M000013_source">show source</a> ]</p>
|
|
323
|
+
<div id="M000013_source" class="dyn-source">
|
|
324
|
+
<pre>
|
|
325
|
+
<span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 91</span>
|
|
326
|
+
91: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">each_leaf</span>
|
|
327
|
+
92: <span class="ruby-identifier">leafs</span>.<span class="ruby-identifier">each</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">leaf</span><span class="ruby-operator">|</span> <span class="ruby-keyword kw">yield</span> <span class="ruby-identifier">leaf</span> }
|
|
328
|
+
93: <span class="ruby-keyword kw">end</span>
|
|
329
|
+
</pre>
|
|
330
|
+
</div>
|
|
331
|
+
</div>
|
|
332
|
+
</div>
|
|
333
|
+
<div class="method">
|
|
334
|
+
<div class="title">
|
|
335
|
+
<a name="M000023"></a><b>enumeration_ask</b>(x,e, bn_vertices = vertices)
|
|
336
|
+
</div>
|
|
337
|
+
<div class="description">
|
|
338
|
+
<p>
|
|
339
|
+
ENUMERATION ASK algorithm
|
|
340
|
+
</p>
|
|
341
|
+
<p>
|
|
342
|
+
Implementation based on: S.Russell, P.Norving, "Artificial
|
|
343
|
+
Intelligence, A Modern Approach", 2nd Edition. pp 506
|
|
344
|
+
</p>
|
|
345
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<b>x</b> —> query variable
|
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|
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<b>e</b> —> variables with observed values
|
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</p>
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<span class="ruby-comment cmt"># File lib/bn4r/bn_algorithms.rb, line 29</span>
|
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29: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">enumeration_ask</span>(<span class="ruby-identifier">x</span>,<span class="ruby-identifier">e</span>, <span class="ruby-identifier">bn_vertices</span> = <span class="ruby-identifier">vertices</span>)
|
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30: <span class="ruby-identifier">e</span> <span class="ruby-operator"><<</span> <span class="ruby-identifier">x</span>
|
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31: <span class="ruby-identifier">q</span> = []
|
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32: <span class="ruby-comment cmt">#p bn_vertices.collect { |v| v.name }
|
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33: <span class="ruby-identifier">x</span>.<span class="ruby-identifier">outcomes</span>.<span class="ruby-identifier">each</span> {<span class="ruby-operator">|</span><span class="ruby-identifier">outcome</span><span class="ruby-operator">|</span>
|
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+
34: <span class="ruby-identifier">x</span>.<span class="ruby-identifier">set_value</span>(<span class="ruby-identifier">outcome</span>)
|
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|
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35: <span class="ruby-identifier">q</span> <span class="ruby-operator"><<</span> <span class="ruby-identifier">enumerate_all</span>(<span class="ruby-identifier">bn_vertices</span>, <span class="ruby-identifier">e</span>)
|
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36: }
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37: <span class="ruby-identifier">q</span>
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38: <span class="ruby-keyword kw">end</span>
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</pre>
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<div class="title">
|
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<a name="M000010"></a><b>get_variable</b>( text )
|
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</div>
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<div class="description">
|
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Gets the variable with given name.
|
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+
</p>
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</div>
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<div class="sourcecode">
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<p class="source-link">[ <a href="javascript:toggleSource('M000010_source')" id="l_M000010_source">show source</a> ]</p>
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<div id="M000010_source" class="dyn-source">
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<pre>
|
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|
+
<span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 75</span>
|
|
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|
+
75: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">get_variable</span>( <span class="ruby-identifier">text</span> )
|
|
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|
+
76: <span class="ruby-identifier">vertices</span>.<span class="ruby-identifier">each</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">v</span><span class="ruby-operator">|</span> <span class="ruby-keyword kw">return</span> <span class="ruby-identifier">v</span> <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">v</span>.<span class="ruby-identifier">name</span> <span class="ruby-operator">==</span> <span class="ruby-identifier">text</span> }
|
|
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|
+
77: <span class="ruby-keyword kw">return</span> <span class="ruby-keyword kw">nil</span>
|
|
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|
+
78: <span class="ruby-keyword kw">end</span>
|
|
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|
+
</pre>
|
|
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|
+
</div>
|
|
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|
+
</div>
|
|
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|
+
</div>
|
|
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|
+
<div class="method">
|
|
394
|
+
<div class="title">
|
|
395
|
+
<a name="M000018"></a><b>inference_by_enumeration</b>()
|
|
396
|
+
</div>
|
|
397
|
+
<div class="description">
|
|
398
|
+
<p>
|
|
399
|
+
Return the probability of a distribution in the bayes net all nodes in the
|
|
400
|
+
Bayes Net must have a value, otherwise will raise a exception
|
|
401
|
+
</p>
|
|
402
|
+
</div>
|
|
403
|
+
<div class="sourcecode">
|
|
404
|
+
<p class="source-link">[ <a href="javascript:toggleSource('M000018_source')" id="l_M000018_source">show source</a> ]</p>
|
|
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|
+
<div id="M000018_source" class="dyn-source">
|
|
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|
+
<pre>
|
|
407
|
+
<span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 122</span>
|
|
408
|
+
122: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">inference_by_enumeration</span>
|
|
409
|
+
123: <span class="ruby-identifier">prob</span> = <span class="ruby-value">1.0</span>;
|
|
410
|
+
124: <span class="ruby-identifier">vertices</span>.<span class="ruby-identifier">each</span> {<span class="ruby-operator">|</span><span class="ruby-identifier">v</span><span class="ruby-operator">|</span> <span class="ruby-identifier">prob</span> = <span class="ruby-identifier">prob</span> <span class="ruby-operator">*</span> <span class="ruby-identifier">p_v_cond_parents</span>(<span class="ruby-identifier">v</span>)}
|
|
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|
+
125: <span class="ruby-identifier">prob</span>
|
|
412
|
+
126: <span class="ruby-keyword kw">end</span>
|
|
413
|
+
</pre>
|
|
414
|
+
</div>
|
|
415
|
+
</div>
|
|
416
|
+
</div>
|
|
417
|
+
<div class="method">
|
|
418
|
+
<div class="title">
|
|
419
|
+
<a name="M000012"></a><b>leafs</b>()
|
|
420
|
+
</div>
|
|
421
|
+
<div class="description">
|
|
422
|
+
<p>
|
|
423
|
+
Returns the leaf nodes
|
|
424
|
+
</p>
|
|
425
|
+
</div>
|
|
426
|
+
<div class="sourcecode">
|
|
427
|
+
<p class="source-link">[ <a href="javascript:toggleSource('M000012_source')" id="l_M000012_source">show source</a> ]</p>
|
|
428
|
+
<div id="M000012_source" class="dyn-source">
|
|
429
|
+
<pre>
|
|
430
|
+
<span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 86</span>
|
|
431
|
+
86: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">leafs</span>
|
|
432
|
+
87: <span class="ruby-identifier">vertices</span>.<span class="ruby-identifier">select</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">v</span><span class="ruby-operator">|</span> <span class="ruby-identifier">childs</span>(<span class="ruby-identifier">v</span>).<span class="ruby-identifier">size</span> <span class="ruby-operator">==</span> <span class="ruby-value">0</span> }
|
|
433
|
+
88: <span class="ruby-keyword kw">end</span>
|
|
434
|
+
</pre>
|
|
435
|
+
</div>
|
|
436
|
+
</div>
|
|
437
|
+
</div>
|
|
438
|
+
<div class="method">
|
|
439
|
+
<div class="title">
|
|
440
|
+
<a name="M000026"></a><b>likelihood_weighting</b>( x, e, n, bn = self )
|
|
441
|
+
</div>
|
|
442
|
+
<div class="description">
|
|
443
|
+
<p>
|
|
444
|
+
Returns an estimation of P(X=x|e) = <P(X=x|e), 1 - P(X=x|e)>
|
|
445
|
+
obtained.
|
|
446
|
+
</p>
|
|
447
|
+
<p>
|
|
448
|
+
Implementation based on: S.Russell, P.Norving, "Artificial
|
|
449
|
+
Intelligence, A Modern Approach", 2nd Edition. pp 515
|
|
450
|
+
</p>
|
|
451
|
+
<p>
|
|
452
|
+
<b>x</b> —> query variable
|
|
453
|
+
</p>
|
|
454
|
+
<p>
|
|
455
|
+
<b>e</b> —> variables with observed values, must be a copy of the
|
|
456
|
+
nodes in bn ( Can‘t be the BayesNetNodes instaces that are in bn ).
|
|
457
|
+
</p>
|
|
458
|
+
<p>
|
|
459
|
+
<b>n</b> —> Number of samples generated
|
|
460
|
+
</p>
|
|
461
|
+
<p>
|
|
462
|
+
WARNING: Clears the values of current bn!
|
|
463
|
+
</p>
|
|
464
|
+
</div>
|
|
465
|
+
<div class="sourcecode">
|
|
466
|
+
<p class="source-link">[ <a href="javascript:toggleSource('M000026_source')" id="l_M000026_source">show source</a> ]</p>
|
|
467
|
+
<div id="M000026_source" class="dyn-source">
|
|
468
|
+
<pre>
|
|
469
|
+
<span class="ruby-comment cmt"># File lib/bn4r/bn_algorithms.rb, line 121</span>
|
|
470
|
+
121: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">likelihood_weighting</span>( <span class="ruby-identifier">x</span>, <span class="ruby-identifier">e</span>, <span class="ruby-identifier">n</span>, <span class="ruby-identifier">bn</span> = <span class="ruby-keyword kw">self</span> )
|
|
471
|
+
122:
|
|
472
|
+
123: <span class="ruby-identifier">retval</span> = [<span class="ruby-value">0</span><span class="ruby-value">.0</span>, <span class="ruby-value">0</span><span class="ruby-value">.0</span>]
|
|
473
|
+
124: <span class="ruby-identifier">n</span>.<span class="ruby-identifier">times</span> {
|
|
474
|
+
125: <span class="ruby-identifier">w_sample</span>, <span class="ruby-identifier">w</span> = <span class="ruby-identifier">weighted_sample</span>(<span class="ruby-identifier">e</span>) <span class="ruby-comment cmt"># ask for a weighted_sample with given evidences
|
|
475
|
+
126: <span class="ruby-identifier">value</span> = <span class="ruby-identifier">w_sample</span>.<span class="ruby-identifier">select</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">v</span><span class="ruby-operator">|</span> <span class="ruby-identifier">v</span>.<span class="ruby-identifier">name</span> <span class="ruby-operator">==</span> <span class="ruby-identifier">x</span>.<span class="ruby-identifier">name</span> }[<span class="ruby-value">0</span>].<span class="ruby-identifier">value</span> <span class="ruby-comment cmt"># select the value for the query variable
|
|
476
|
+
127:
|
|
477
|
+
128: <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">value</span> <span class="ruby-operator">==</span> (<span class="ruby-identifier">x</span>.<span class="ruby-identifier">value</span> <span class="ruby-operator">||</span> <span class="ruby-keyword kw">true</span>) <span class="ruby-comment cmt"># if no value for x, ask for true
|
|
478
|
+
129: <span class="ruby-identifier">retval</span>[<span class="ruby-value">1</span>] <span class="ruby-operator">+=</span> <span class="ruby-identifier">w</span>
|
|
479
|
+
130: <span class="ruby-keyword kw">else</span>
|
|
480
|
+
131: <span class="ruby-identifier">retval</span>[<span class="ruby-value">0</span>] <span class="ruby-operator">+=</span> <span class="ruby-identifier">w</span>
|
|
481
|
+
132: <span class="ruby-keyword kw">end</span>
|
|
482
|
+
133: }
|
|
483
|
+
134:
|
|
484
|
+
135: <span class="ruby-comment cmt"># Normalize results
|
|
485
|
+
136: <span class="ruby-identifier">norm</span> = <span class="ruby-identifier">retval</span>[<span class="ruby-value">1</span>].<span class="ruby-identifier">to_f</span> <span class="ruby-operator">/</span> (<span class="ruby-identifier">retval</span>[<span class="ruby-value">0</span>]<span class="ruby-operator">+</span><span class="ruby-identifier">retval</span>[<span class="ruby-value">1</span>]).<span class="ruby-identifier">to_f</span>
|
|
486
|
+
137:
|
|
487
|
+
138: <span class="ruby-keyword kw">return</span> [<span class="ruby-identifier">norm</span>, <span class="ruby-value">1</span><span class="ruby-operator">-</span><span class="ruby-identifier">norm</span>]
|
|
488
|
+
139: <span class="ruby-keyword kw">end</span>
|
|
489
|
+
</pre>
|
|
490
|
+
</div>
|
|
491
|
+
</div>
|
|
492
|
+
</div>
|
|
493
|
+
<div class="method">
|
|
494
|
+
<div class="title">
|
|
495
|
+
<a name="M000022"></a><b>nodes_ordered_by_breath_first_search</b>(nodes = roots, bn_ordered = Array.new)
|
|
496
|
+
</div>
|
|
497
|
+
<div class="description">
|
|
498
|
+
<p>
|
|
499
|
+
Returns nodes ordered by Breath First Search
|
|
500
|
+
</p>
|
|
501
|
+
</div>
|
|
502
|
+
<div class="sourcecode">
|
|
503
|
+
<p class="source-link">[ <a href="javascript:toggleSource('M000022_source')" id="l_M000022_source">show source</a> ]</p>
|
|
504
|
+
<div id="M000022_source" class="dyn-source">
|
|
505
|
+
<pre>
|
|
506
|
+
<span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 152</span>
|
|
507
|
+
152: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">nodes_ordered_by_breath_first_search</span>(<span class="ruby-identifier">nodes</span> = <span class="ruby-identifier">roots</span>, <span class="ruby-identifier">bn_ordered</span> = <span class="ruby-constant">Array</span>.<span class="ruby-identifier">new</span>)
|
|
508
|
+
153:
|
|
509
|
+
154: <span class="ruby-identifier">nodes</span>.<span class="ruby-identifier">each</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">v</span><span class="ruby-operator">|</span>
|
|
510
|
+
155: <span class="ruby-keyword kw">next</span> <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">bn_ordered</span>.<span class="ruby-identifier">include?</span>(<span class="ruby-identifier">v</span>)
|
|
511
|
+
156: <span class="ruby-identifier">bn_ordered</span> <span class="ruby-operator"><<</span> <span class="ruby-identifier">v</span>
|
|
512
|
+
157: <span class="ruby-identifier">nodes_ordered_by_breath_first_search</span>(<span class="ruby-identifier">childs</span>(<span class="ruby-identifier">v</span>), <span class="ruby-identifier">bn_ordered</span>)
|
|
513
|
+
158: }
|
|
514
|
+
159: <span class="ruby-keyword kw">return</span> <span class="ruby-identifier">bn_ordered</span>.<span class="ruby-identifier">flatten</span>
|
|
515
|
+
160: <span class="ruby-keyword kw">end</span>
|
|
516
|
+
</pre>
|
|
517
|
+
</div>
|
|
518
|
+
</div>
|
|
519
|
+
</div>
|
|
520
|
+
<div class="method">
|
|
521
|
+
<div class="title">
|
|
522
|
+
<a name="M000021"></a><b>nodes_ordered_by_dependencies</b>(nodes = vertices, bn_ordered = Array.new)
|
|
523
|
+
</div>
|
|
524
|
+
<div class="description">
|
|
525
|
+
<p>
|
|
526
|
+
Returns nodes ordered by dependencies ( from those who haven’t (
|
|
527
|
+
roots ) to leaves ).
|
|
528
|
+
</p>
|
|
529
|
+
</div>
|
|
530
|
+
<div class="sourcecode">
|
|
531
|
+
<p class="source-link">[ <a href="javascript:toggleSource('M000021_source')" id="l_M000021_source">show source</a> ]</p>
|
|
532
|
+
<div id="M000021_source" class="dyn-source">
|
|
533
|
+
<pre>
|
|
534
|
+
<span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 142</span>
|
|
535
|
+
142: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">nodes_ordered_by_dependencies</span>(<span class="ruby-identifier">nodes</span> = <span class="ruby-identifier">vertices</span>, <span class="ruby-identifier">bn_ordered</span> = <span class="ruby-constant">Array</span>.<span class="ruby-identifier">new</span>)
|
|
536
|
+
143: <span class="ruby-identifier">nodes</span>.<span class="ruby-identifier">each</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">v</span><span class="ruby-operator">|</span>
|
|
537
|
+
144: <span class="ruby-keyword kw">next</span> <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">bn_ordered</span>.<span class="ruby-identifier">include?</span>(<span class="ruby-identifier">v</span>)
|
|
538
|
+
145: <span class="ruby-identifier">nodes_ordered_by_dependencies</span>(<span class="ruby-identifier">v</span>.<span class="ruby-identifier">parents</span>, <span class="ruby-identifier">bn_ordered</span>) <span class="ruby-keyword kw">if</span> <span class="ruby-operator">!</span><span class="ruby-identifier">v</span>.<span class="ruby-identifier">root?</span>
|
|
539
|
+
146: <span class="ruby-identifier">bn_ordered</span> <span class="ruby-operator"><<</span> <span class="ruby-identifier">v</span>
|
|
540
|
+
147: }
|
|
541
|
+
148: <span class="ruby-keyword kw">return</span> <span class="ruby-identifier">bn_ordered</span>.<span class="ruby-identifier">flatten</span>
|
|
542
|
+
149: <span class="ruby-keyword kw">end</span>
|
|
543
|
+
</pre>
|
|
544
|
+
</div>
|
|
545
|
+
</div>
|
|
546
|
+
</div>
|
|
547
|
+
<div class="method">
|
|
548
|
+
<div class="title">
|
|
549
|
+
<a name="M000016"></a><b>num_parents</b>(v)
|
|
550
|
+
</div>
|
|
551
|
+
<div class="description">
|
|
552
|
+
<p>
|
|
553
|
+
Returns the number of parents of a node.
|
|
554
|
+
</p>
|
|
555
|
+
</div>
|
|
556
|
+
<div class="sourcecode">
|
|
557
|
+
<p class="source-link">[ <a href="javascript:toggleSource('M000016_source')" id="l_M000016_source">show source</a> ]</p>
|
|
558
|
+
<div id="M000016_source" class="dyn-source">
|
|
559
|
+
<pre>
|
|
560
|
+
<span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 110</span>
|
|
561
|
+
110: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">num_parents</span>(<span class="ruby-identifier">v</span>)
|
|
562
|
+
111: <span class="ruby-keyword kw">return</span> <span class="ruby-identifier">v</span>.<span class="ruby-identifier">parents</span>.<span class="ruby-identifier">size</span>
|
|
563
|
+
112: <span class="ruby-keyword kw">end</span>
|
|
564
|
+
</pre>
|
|
565
|
+
</div>
|
|
566
|
+
</div>
|
|
567
|
+
</div>
|
|
568
|
+
<div class="method">
|
|
569
|
+
<div class="title">
|
|
570
|
+
<a name="M000019"></a><b>p_v_cond_parents</b>(v)
|
|
571
|
+
</div>
|
|
572
|
+
<div class="description">
|
|
573
|
+
<p>
|
|
574
|
+
Returns the probability of a node conditioned to his parents:
|
|
575
|
+
</p>
|
|
576
|
+
<pre>
|
|
577
|
+
P(v|parents(v))
|
|
578
|
+
</pre>
|
|
579
|
+
</div>
|
|
580
|
+
<div class="sourcecode">
|
|
581
|
+
<p class="source-link">[ <a href="javascript:toggleSource('M000019_source')" id="l_M000019_source">show source</a> ]</p>
|
|
582
|
+
<div id="M000019_source" class="dyn-source">
|
|
583
|
+
<pre>
|
|
584
|
+
<span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 130</span>
|
|
585
|
+
130: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">p_v_cond_parents</span>(<span class="ruby-identifier">v</span>)
|
|
586
|
+
131: <span class="ruby-identifier">givens_assignments</span> = <span class="ruby-identifier">v</span>.<span class="ruby-identifier">parents</span>.<span class="ruby-identifier">collect</span> {<span class="ruby-operator">|</span><span class="ruby-identifier">parents</span><span class="ruby-operator">|</span> <span class="ruby-identifier">parents</span>.<span class="ruby-identifier">value</span>}
|
|
587
|
+
132: <span class="ruby-identifier">v</span>.<span class="ruby-identifier">get_probability</span>(<span class="ruby-identifier">v</span>.<span class="ruby-identifier">value</span>, <span class="ruby-identifier">givens_assignments</span>).<span class="ruby-identifier">to_f</span>
|
|
588
|
+
133: <span class="ruby-keyword kw">end</span>
|
|
589
|
+
</pre>
|
|
590
|
+
</div>
|
|
591
|
+
</div>
|
|
592
|
+
</div>
|
|
593
|
+
<div class="method">
|
|
594
|
+
<div class="title">
|
|
595
|
+
<a name="M000024"></a><b>prior_sample</b>(nodes_ordered = nodes_ordered_by_dependencies)
|
|
596
|
+
</div>
|
|
597
|
+
<div class="description">
|
|
598
|
+
<p>
|
|
599
|
+
Returns a sample from prior joint distribution specified by the network.
|
|
600
|
+
</p>
|
|
601
|
+
<p>
|
|
602
|
+
Implementation based on: S.Russell, P.Norving, "Artificial
|
|
603
|
+
Intelligence, A Modern Approach", 2nd Edition. pp 511-512
|
|
604
|
+
</p>
|
|
605
|
+
<p>
|
|
606
|
+
The input are the nodes of the bn ordered by dependencies see <a
|
|
607
|
+
href="BayesNet.html#M000021">nodes_ordered_by_dependencies</a>
|
|
608
|
+
</p>
|
|
609
|
+
</div>
|
|
610
|
+
<div class="sourcecode">
|
|
611
|
+
<p class="source-link">[ <a href="javascript:toggleSource('M000024_source')" id="l_M000024_source">show source</a> ]</p>
|
|
612
|
+
<div id="M000024_source" class="dyn-source">
|
|
613
|
+
<pre>
|
|
614
|
+
<span class="ruby-comment cmt"># File lib/bn4r/bn_algorithms.rb, line 46</span>
|
|
615
|
+
46: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">prior_sample</span>(<span class="ruby-identifier">nodes_ordered</span> = <span class="ruby-identifier">nodes_ordered_by_dependencies</span>)
|
|
616
|
+
47: <span class="ruby-identifier">sample</span> = <span class="ruby-constant">Array</span>.<span class="ruby-identifier">new</span>
|
|
617
|
+
48: <span class="ruby-identifier">nodes_ordered</span>.<span class="ruby-identifier">each</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">v</span><span class="ruby-operator">|</span>
|
|
618
|
+
49: <span class="ruby-identifier">value</span> = <span class="ruby-keyword kw">nil</span>
|
|
619
|
+
50: <span class="ruby-identifier">prob</span> = <span class="ruby-value">0</span><span class="ruby-value">.0</span>; <span class="ruby-identifier">r_prob</span> = <span class="ruby-identifier">rand</span>
|
|
620
|
+
51: <span class="ruby-identifier">v</span>.<span class="ruby-identifier">outcomes</span>.<span class="ruby-identifier">each</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">outcome</span><span class="ruby-operator">|</span>
|
|
621
|
+
52: <span class="ruby-identifier">prob</span> <span class="ruby-operator">+=</span> <span class="ruby-identifier">v</span>.<span class="ruby-identifier">get_probability</span>(<span class="ruby-identifier">outcome</span>)
|
|
622
|
+
53: <span class="ruby-identifier">value</span> = <span class="ruby-identifier">outcome</span> <span class="ruby-keyword kw">and</span> <span class="ruby-keyword kw">break</span> <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">r_prob</span> <span class="ruby-operator"><</span> <span class="ruby-identifier">prob</span>
|
|
623
|
+
54: }
|
|
624
|
+
55: <span class="ruby-identifier">v</span>.<span class="ruby-identifier">set_value</span>(<span class="ruby-identifier">value</span>)
|
|
625
|
+
56: <span class="ruby-identifier">sample</span> <span class="ruby-operator"><<</span> <span class="ruby-identifier">v</span>.<span class="ruby-identifier">copy</span>
|
|
626
|
+
57: }
|
|
627
|
+
58: <span class="ruby-comment cmt"># leave the bn clear of values.
|
|
628
|
+
59: <span class="ruby-identifier">nodes_ordered</span>.<span class="ruby-identifier">each</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">v</span><span class="ruby-operator">|</span> <span class="ruby-identifier">v</span>.<span class="ruby-identifier">clear_value</span> }
|
|
629
|
+
60:
|
|
630
|
+
61: <span class="ruby-keyword kw">return</span> <span class="ruby-identifier">sample</span>
|
|
631
|
+
62: <span class="ruby-keyword kw">end</span>
|
|
632
|
+
</pre>
|
|
633
|
+
</div>
|
|
634
|
+
</div>
|
|
635
|
+
</div>
|
|
636
|
+
<div class="method">
|
|
637
|
+
<div class="title">
|
|
638
|
+
<a name="M000025"></a><b>rejection_sampling</b>( x, e, n, bn = self )
|
|
639
|
+
</div>
|
|
640
|
+
<div class="description">
|
|
641
|
+
<p>
|
|
642
|
+
Returns an estimation of P(X=x|e) = <P(X=x|e), 1 - P(X=x|e)>
|
|
643
|
+
obtained. Generates samples from prior joint distribution specified by the
|
|
644
|
+
network, rejects all those that do not match the evidence, and finally
|
|
645
|
+
counts hoy often X = x occurs in remaining samples.
|
|
646
|
+
</p>
|
|
647
|
+
<p>
|
|
648
|
+
Caution, this algorthm is unusable for complex problems because rejects
|
|
649
|
+
many samples!
|
|
650
|
+
</p>
|
|
651
|
+
<p>
|
|
652
|
+
Implementation based on: S.Russell, P.Norving, "Artificial
|
|
653
|
+
Intelligence, A Modern Approach", 2nd Edition. pp 513
|
|
654
|
+
</p>
|
|
655
|
+
<p>
|
|
656
|
+
<b>x</b> —> query variable
|
|
657
|
+
</p>
|
|
658
|
+
<p>
|
|
659
|
+
<b>e</b> —> variables with observed values
|
|
660
|
+
</p>
|
|
661
|
+
<p>
|
|
662
|
+
<b>n</b> —> Number of samples generated
|
|
663
|
+
</p>
|
|
664
|
+
</div>
|
|
665
|
+
<div class="sourcecode">
|
|
666
|
+
<p class="source-link">[ <a href="javascript:toggleSource('M000025_source')" id="l_M000025_source">show source</a> ]</p>
|
|
667
|
+
<div id="M000025_source" class="dyn-source">
|
|
668
|
+
<pre>
|
|
669
|
+
<span class="ruby-comment cmt"># File lib/bn4r/bn_algorithms.rb, line 79</span>
|
|
670
|
+
79: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">rejection_sampling</span>( <span class="ruby-identifier">x</span>, <span class="ruby-identifier">e</span>, <span class="ruby-identifier">n</span>, <span class="ruby-identifier">bn</span> = <span class="ruby-keyword kw">self</span> )
|
|
671
|
+
80:
|
|
672
|
+
81: <span class="ruby-identifier">evidece_list</span> = [<span class="ruby-identifier">e</span>] <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">e</span>.<span class="ruby-identifier">class</span> <span class="ruby-operator">!=</span> <span class="ruby-constant">Array</span>
|
|
673
|
+
82: <span class="ruby-identifier">x_list</span> = [<span class="ruby-identifier">x</span>] <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">x</span>.<span class="ruby-identifier">class</span> <span class="ruby-operator">!=</span> <span class="ruby-constant">Array</span>
|
|
674
|
+
83:
|
|
675
|
+
84: <span class="ruby-identifier">nodes_ordered</span> = <span class="ruby-identifier">bn</span>.<span class="ruby-identifier">nodes_ordered_by_dependencies</span>
|
|
676
|
+
85: <span class="ruby-identifier">evidence_vector</span> = <span class="ruby-identifier">get_vector_value</span>(<span class="ruby-identifier">evidece_list</span>, <span class="ruby-identifier">nodes_ordered</span>)
|
|
677
|
+
86: <span class="ruby-identifier">x_vector</span> = <span class="ruby-identifier">get_vector_value</span>(<span class="ruby-identifier">x_list</span>, <span class="ruby-identifier">nodes_ordered</span>)
|
|
678
|
+
87:
|
|
679
|
+
88: <span class="ruby-identifier">total_valid</span> = <span class="ruby-value">0</span>; <span class="ruby-identifier">total_correct</span> = <span class="ruby-value">0</span>
|
|
680
|
+
89: <span class="ruby-identifier">n</span>.<span class="ruby-identifier">times</span> <span class="ruby-keyword kw">do</span>
|
|
681
|
+
90: <span class="ruby-identifier">sample_vector</span> = <span class="ruby-identifier">bn</span>.<span class="ruby-identifier">prior_sample</span>(<span class="ruby-identifier">nodes_ordered</span>).<span class="ruby-identifier">collect</span> {<span class="ruby-operator">|</span><span class="ruby-identifier">v</span><span class="ruby-operator">|</span> <span class="ruby-identifier">v</span>.<span class="ruby-identifier">value</span>}
|
|
682
|
+
91:
|
|
683
|
+
92: <span class="ruby-identifier">valid</span> = <span class="ruby-keyword kw">true</span>; <span class="ruby-identifier">correct</span> = <span class="ruby-keyword kw">true</span>
|
|
684
|
+
93: <span class="ruby-keyword kw">for</span> <span class="ruby-identifier">i</span> <span class="ruby-keyword kw">in</span> <span class="ruby-value">0</span><span class="ruby-operator">..</span>(<span class="ruby-identifier">sample_vector</span>.<span class="ruby-identifier">size</span><span class="ruby-operator">-</span><span class="ruby-value">1</span>) <span class="ruby-keyword kw">do</span>
|
|
685
|
+
94: <span class="ruby-identifier">correct</span> = <span class="ruby-keyword kw">false</span> <span class="ruby-keyword kw">if</span> <span class="ruby-operator">!</span><span class="ruby-identifier">x_vector</span>[<span class="ruby-identifier">i</span>].<span class="ruby-identifier">nil?</span> <span class="ruby-keyword kw">and</span> <span class="ruby-identifier">sample_vector</span>[<span class="ruby-identifier">i</span>] <span class="ruby-operator">!=</span> <span class="ruby-identifier">x_vector</span>[<span class="ruby-identifier">i</span>]
|
|
686
|
+
95: <span class="ruby-identifier">valid</span> = <span class="ruby-keyword kw">false</span> <span class="ruby-keyword kw">and</span> <span class="ruby-keyword kw">break</span> <span class="ruby-keyword kw">if</span> <span class="ruby-operator">!</span><span class="ruby-identifier">evidence_vector</span>[<span class="ruby-identifier">i</span>].<span class="ruby-identifier">nil?</span> <span class="ruby-keyword kw">and</span> <span class="ruby-identifier">sample_vector</span>[<span class="ruby-identifier">i</span>] <span class="ruby-operator">!=</span> <span class="ruby-identifier">evidence_vector</span>[<span class="ruby-identifier">i</span>]
|
|
687
|
+
96: <span class="ruby-keyword kw">end</span>
|
|
688
|
+
97:
|
|
689
|
+
98: <span class="ruby-keyword kw">next</span> <span class="ruby-keyword kw">if</span> <span class="ruby-operator">!</span><span class="ruby-identifier">valid</span>
|
|
690
|
+
99: <span class="ruby-identifier">total_valid</span> <span class="ruby-operator">+=</span> <span class="ruby-value">1</span>
|
|
691
|
+
100: <span class="ruby-identifier">total_correct</span> <span class="ruby-operator">+=</span> <span class="ruby-value">1</span> <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">correct</span>
|
|
692
|
+
101: <span class="ruby-keyword kw">end</span>
|
|
693
|
+
102:
|
|
694
|
+
103: <span class="ruby-identifier">p_true</span> = <span class="ruby-identifier">total_correct</span>.<span class="ruby-identifier">to_f</span><span class="ruby-operator">/</span><span class="ruby-identifier">total_valid</span>.<span class="ruby-identifier">to_f</span>
|
|
695
|
+
104: <span class="ruby-keyword kw">return</span> [<span class="ruby-identifier">p_true</span>, <span class="ruby-value">1</span><span class="ruby-operator">-</span><span class="ruby-identifier">p_true</span>]
|
|
696
|
+
105: <span class="ruby-comment cmt">#return [total_correct.to_f, total_valid.to_f]
|
|
697
|
+
106: <span class="ruby-keyword kw">end</span>
|
|
698
|
+
</pre>
|
|
699
|
+
</div>
|
|
700
|
+
</div>
|
|
701
|
+
</div>
|
|
702
|
+
<div class="method">
|
|
703
|
+
<div class="title">
|
|
704
|
+
<a name="M000006"></a><b>remove_vertex</b>(v)
|
|
705
|
+
</div>
|
|
706
|
+
<div class="description">
|
|
707
|
+
<p>
|
|
708
|
+
Removes a vertex and its edges of the <a href="BayesNet.html">BayesNet</a>,
|
|
709
|
+
removing also its references from childs nodes.
|
|
710
|
+
</p>
|
|
711
|
+
</div>
|
|
712
|
+
<div class="sourcecode">
|
|
713
|
+
<p class="source-link">[ <a href="javascript:toggleSource('M000006_source')" id="l_M000006_source">show source</a> ]</p>
|
|
714
|
+
<div id="M000006_source" class="dyn-source">
|
|
715
|
+
<pre>
|
|
716
|
+
<span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 40</span>
|
|
717
|
+
40: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">remove_vertex</span>(<span class="ruby-identifier">v</span>)
|
|
718
|
+
41: <span class="ruby-keyword kw">self</span>.<span class="ruby-identifier">each_child</span>(<span class="ruby-identifier">v</span>) {<span class="ruby-operator">|</span><span class="ruby-identifier">c</span><span class="ruby-operator">|</span> <span class="ruby-identifier">c</span>.<span class="ruby-identifier">parents</span>.<span class="ruby-identifier">delete</span>(<span class="ruby-identifier">v</span>)}
|
|
719
|
+
42: <span class="ruby-keyword kw">super</span>(<span class="ruby-identifier">v</span>)
|
|
720
|
+
43: <span class="ruby-keyword kw">end</span>
|
|
721
|
+
</pre>
|
|
722
|
+
</div>
|
|
723
|
+
</div>
|
|
724
|
+
</div>
|
|
725
|
+
<div class="method">
|
|
726
|
+
<div class="title">
|
|
727
|
+
<a name="M000015"></a><b>root?</b>(v)
|
|
728
|
+
</div>
|
|
729
|
+
<div class="description">
|
|
730
|
+
<p>
|
|
731
|
+
Returns true/false if given Node is root.
|
|
732
|
+
</p>
|
|
733
|
+
</div>
|
|
734
|
+
<div class="sourcecode">
|
|
735
|
+
<p class="source-link">[ <a href="javascript:toggleSource('M000015_source')" id="l_M000015_source">show source</a> ]</p>
|
|
736
|
+
<div id="M000015_source" class="dyn-source">
|
|
737
|
+
<pre>
|
|
738
|
+
<span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 104</span>
|
|
739
|
+
104: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">root?</span>(<span class="ruby-identifier">v</span>)
|
|
740
|
+
105: <span class="ruby-keyword kw">return</span> <span class="ruby-keyword kw">true</span> <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">num_parents</span>(<span class="ruby-identifier">v</span>) <span class="ruby-operator">==</span> <span class="ruby-value">0</span>
|
|
741
|
+
106: <span class="ruby-keyword kw">false</span>
|
|
742
|
+
107: <span class="ruby-keyword kw">end</span>
|
|
743
|
+
</pre>
|
|
744
|
+
</div>
|
|
745
|
+
</div>
|
|
746
|
+
</div>
|
|
747
|
+
<div class="method">
|
|
748
|
+
<div class="title">
|
|
749
|
+
<a name="M000011"></a><b>roots</b>()
|
|
750
|
+
</div>
|
|
751
|
+
<div class="description">
|
|
752
|
+
<p>
|
|
753
|
+
Returns the root nodes of the Bayes Net.
|
|
754
|
+
</p>
|
|
755
|
+
</div>
|
|
756
|
+
<div class="sourcecode">
|
|
757
|
+
<p class="source-link">[ <a href="javascript:toggleSource('M000011_source')" id="l_M000011_source">show source</a> ]</p>
|
|
758
|
+
<div id="M000011_source" class="dyn-source">
|
|
759
|
+
<pre>
|
|
760
|
+
<span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 81</span>
|
|
761
|
+
81: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">roots</span>
|
|
762
|
+
82: <span class="ruby-identifier">vertices</span>.<span class="ruby-identifier">select</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">v</span><span class="ruby-operator">|</span> <span class="ruby-identifier">root?</span>(<span class="ruby-identifier">v</span>) }
|
|
763
|
+
83: <span class="ruby-keyword kw">end</span>
|
|
764
|
+
</pre>
|
|
765
|
+
</div>
|
|
766
|
+
</div>
|
|
767
|
+
</div>
|
|
768
|
+
<div class="method">
|
|
769
|
+
<div class="title">
|
|
770
|
+
<a name="M000014"></a><b>siblings</b>(v)
|
|
771
|
+
</div>
|
|
772
|
+
<div class="sourcecode">
|
|
773
|
+
<p class="source-link">[ <a href="javascript:toggleSource('M000014_source')" id="l_M000014_source">show source</a> ]</p>
|
|
774
|
+
<div id="M000014_source" class="dyn-source">
|
|
775
|
+
<pre>
|
|
776
|
+
<span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 95</span>
|
|
777
|
+
95: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">siblings</span>(<span class="ruby-identifier">v</span>)
|
|
778
|
+
96: <span class="ruby-keyword kw">return</span> <span class="ruby-identifier">roots</span> <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">v</span>.<span class="ruby-identifier">root?</span>
|
|
779
|
+
97: <span class="ruby-identifier">v</span>.<span class="ruby-identifier">parents</span>.<span class="ruby-identifier">map</span> <span class="ruby-keyword kw">do</span> <span class="ruby-operator">|</span><span class="ruby-identifier">p</span><span class="ruby-operator">|</span>
|
|
780
|
+
98: <span class="ruby-identifier">childs</span>(<span class="ruby-identifier">p</span>)
|
|
781
|
+
99: <span class="ruby-keyword kw">end</span>.<span class="ruby-identifier">flatten</span>.<span class="ruby-identifier">uniq</span>
|
|
782
|
+
100: <span class="ruby-keyword kw">end</span>
|
|
783
|
+
</pre>
|
|
784
|
+
</div>
|
|
785
|
+
</div>
|
|
786
|
+
</div>
|
|
787
|
+
<div class="method">
|
|
788
|
+
<div class="title">
|
|
789
|
+
<a name="M000003"></a><b>to_dot</b>(bn = self)
|
|
790
|
+
</div>
|
|
791
|
+
<div class="sourcecode">
|
|
792
|
+
<p class="source-link">[ <a href="javascript:toggleSource('M000003_source')" id="l_M000003_source">show source</a> ]</p>
|
|
793
|
+
<div id="M000003_source" class="dyn-source">
|
|
794
|
+
<pre>
|
|
795
|
+
<span class="ruby-comment cmt"># File lib/bn4r/bn_export.rb, line 20</span>
|
|
796
|
+
20: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">to_dot</span>(<span class="ruby-identifier">bn</span> = <span class="ruby-keyword kw">self</span>)
|
|
797
|
+
21: <span class="ruby-comment cmt">#TODO: label relations between nodes
|
|
798
|
+
22: <span class="ruby-comment cmt">#TODO: print information about probabilities tables?
|
|
799
|
+
23: <span class="ruby-identifier">bn</span>.<span class="ruby-identifier">to_dot_graph</span>.<span class="ruby-identifier">to_s</span>
|
|
800
|
+
24: <span class="ruby-keyword kw">end</span>
|
|
801
|
+
</pre>
|
|
802
|
+
</div>
|
|
803
|
+
</div>
|
|
804
|
+
</div>
|
|
805
|
+
<div class="method">
|
|
806
|
+
<div class="title">
|
|
807
|
+
<a name="M000004"></a><b>to_xbn</b>(bn = self)
|
|
808
|
+
</div>
|
|
809
|
+
<div class="sourcecode">
|
|
810
|
+
<p class="source-link">[ <a href="javascript:toggleSource('M000004_source')" id="l_M000004_source">show source</a> ]</p>
|
|
811
|
+
<div id="M000004_source" class="dyn-source">
|
|
812
|
+
<pre>
|
|
813
|
+
<span class="ruby-comment cmt"># File lib/bn4r/bn_export.rb, line 26</span>
|
|
814
|
+
26: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">to_xbn</span>(<span class="ruby-identifier">bn</span> = <span class="ruby-keyword kw">self</span>)
|
|
815
|
+
27: <span class="ruby-comment cmt">#TODO beautify code using REXML
|
|
816
|
+
28: <span class="ruby-identifier">xbn_str</span> = <span class="ruby-value str">"<?xml version=\"1.0\"?>\n"</span>
|
|
817
|
+
29: <span class="ruby-identifier">xbn_str</span> <span class="ruby-operator">+=</span> <span class="ruby-value str">"<ANALYSISNOTEBOOK NAME=\"Notebook.bndefault\" ROOT=\"bndefault\">\n"</span>
|
|
818
|
+
30: <span class="ruby-identifier">xbn_str</span> <span class="ruby-operator">+=</span> <span class="ruby-value str">"<BNMODEL NAME=\"bndefault\"><STATICPROPERTIES><FORMAT>MSR DTAS XML</FORMAT>\n"</span>
|
|
819
|
+
31: <span class="ruby-identifier">xbn_str</span> <span class="ruby-operator">+=</span> <span class="ruby-value str">" <VERSION>1.0</VERSION>\n"</span>
|
|
820
|
+
32: <span class="ruby-identifier">xbn_str</span> <span class="ruby-operator">+=</span> <span class="ruby-value str">" <CREATOR>Microsoft Research DTAS</CREATOR>\n"</span>
|
|
821
|
+
33: <span class="ruby-identifier">xbn_str</span> <span class="ruby-operator">+=</span> <span class="ruby-value str">" </STATICPROPERTIES>\n"</span>
|
|
822
|
+
34: <span class="ruby-identifier">xbn_str</span> <span class="ruby-operator">+=</span> <span class="ruby-value str">" <DYNAMICPROPERTIES><PROPERTYTYPE NAME=\"DTASDG_Notes\" TYPE=\"stringarray\"><COMMENT>Notes on the diagram</COMMENT>\n"</span>
|
|
823
|
+
35: <span class="ruby-identifier">xbn_str</span> <span class="ruby-operator">+=</span> <span class="ruby-value str">" </PROPERTYTYPE>\n"</span>
|
|
824
|
+
36: <span class="ruby-identifier">xbn_str</span> <span class="ruby-operator">+=</span> <span class="ruby-value str">" <PROPERTYTYPE NAME=\"MS_Addins\" TYPE=\"stringarray\"/>\n"</span>
|
|
825
|
+
37: <span class="ruby-identifier">xbn_str</span> <span class="ruby-operator">+=</span> <span class="ruby-value str">" </DYNAMICPROPERTIES>\n"</span>
|
|
826
|
+
38:
|
|
827
|
+
39: <span class="ruby-identifier">xbn_str</span> <span class="ruby-operator">+=</span> <span class="ruby-identifier">xbn_variables</span>(<span class="ruby-identifier">bn</span>)
|
|
828
|
+
40: <span class="ruby-identifier">xbn_str</span> <span class="ruby-operator">+=</span> <span class="ruby-identifier">xbn_structure</span>(<span class="ruby-identifier">bn</span>)
|
|
829
|
+
41: <span class="ruby-identifier">xbn_str</span> <span class="ruby-operator">+=</span> <span class="ruby-identifier">xbn_distributions</span>(<span class="ruby-identifier">bn</span>)
|
|
830
|
+
42:
|
|
831
|
+
43: <span class="ruby-identifier">xbn_str</span> <span class="ruby-operator">+=</span> <span class="ruby-value str">" </BNMODEL>\n"</span>
|
|
832
|
+
44: <span class="ruby-identifier">xbn_str</span> <span class="ruby-operator">+=</span> <span class="ruby-value str">"</ANALYSISNOTEBOOK>\n"</span>
|
|
833
|
+
45:
|
|
834
|
+
46: <span class="ruby-keyword kw">end</span>
|
|
835
|
+
</pre>
|
|
836
|
+
</div>
|
|
837
|
+
</div>
|
|
838
|
+
</div>
|
|
839
|
+
<div class="sectiontitle">Protected Instance methods</div>
|
|
840
|
+
<div class="method">
|
|
841
|
+
<div class="title">
|
|
842
|
+
<a name="M000027"></a><b>enumerate_all</b>(vars, e)
|
|
843
|
+
</div>
|
|
844
|
+
<div class="description">
|
|
845
|
+
<p>
|
|
846
|
+
Auxiliar function to compute Enumeration Ask Algorithm
|
|
847
|
+
</p>
|
|
848
|
+
</div>
|
|
849
|
+
<div class="sourcecode">
|
|
850
|
+
<p class="source-link">[ <a href="javascript:toggleSource('M000027_source')" id="l_M000027_source">show source</a> ]</p>
|
|
851
|
+
<div id="M000027_source" class="dyn-source">
|
|
852
|
+
<pre>
|
|
853
|
+
<span class="ruby-comment cmt"># File lib/bn4r/bn_algorithms.rb, line 143</span>
|
|
854
|
+
143: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">enumerate_all</span>(<span class="ruby-identifier">vars</span>, <span class="ruby-identifier">e</span>)
|
|
855
|
+
144:
|
|
856
|
+
145: <span class="ruby-keyword kw">return</span> <span class="ruby-value">1.0</span> <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">vars</span>.<span class="ruby-identifier">empty?</span>
|
|
857
|
+
146:
|
|
858
|
+
147: <span class="ruby-identifier">y</span> = <span class="ruby-identifier">vars</span>.<span class="ruby-identifier">first</span>; <span class="ruby-identifier">i</span> = <span class="ruby-value">1</span>
|
|
859
|
+
148: <span class="ruby-keyword kw">while</span> <span class="ruby-operator">!</span><span class="ruby-identifier">y</span>.<span class="ruby-identifier">all_parents_with_values?</span> <span class="ruby-keyword kw">and</span> <span class="ruby-identifier">i</span> <span class="ruby-operator"><</span> <span class="ruby-identifier">vars</span>.<span class="ruby-identifier">size</span>
|
|
860
|
+
149: <span class="ruby-identifier">y</span> = <span class="ruby-identifier">vars</span>[<span class="ruby-identifier">i</span>]
|
|
861
|
+
150: <span class="ruby-identifier">i</span> = <span class="ruby-identifier">i</span> <span class="ruby-operator">+</span> <span class="ruby-value">1</span>
|
|
862
|
+
151: <span class="ruby-keyword kw">end</span>
|
|
863
|
+
152: <span class="ruby-identifier">raise</span> <span class="ruby-value str">"Error bayes net not computable with enumeration-ask "</span> <span class="ruby-operator">+</span> \
|
|
864
|
+
153: <span class="ruby-value str">"algorithm"</span> <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">i</span> <span class="ruby-operator">==</span> <span class="ruby-identifier">vars</span>.<span class="ruby-identifier">size</span> <span class="ruby-keyword kw">and</span> <span class="ruby-operator">!</span><span class="ruby-identifier">y</span>.<span class="ruby-identifier">all_parents_with_values?</span>
|
|
865
|
+
154:
|
|
866
|
+
155: <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">e</span>.<span class="ruby-identifier">include?</span>(<span class="ruby-identifier">y</span>)
|
|
867
|
+
156: <span class="ruby-keyword kw">return</span> <span class="ruby-identifier">p_v_cond_parents</span>(<span class="ruby-identifier">y</span>) <span class="ruby-operator">*</span> <span class="ruby-identifier">enumerate_all</span>(<span class="ruby-identifier">vars</span><span class="ruby-operator">-</span>[<span class="ruby-identifier">y</span>], <span class="ruby-identifier">e</span>)
|
|
868
|
+
157: <span class="ruby-keyword kw">else</span>
|
|
869
|
+
158: <span class="ruby-identifier">prob</span> = <span class="ruby-value">0</span><span class="ruby-value">.0</span>
|
|
870
|
+
159: <span class="ruby-identifier">y</span>.<span class="ruby-identifier">outcomes</span>.<span class="ruby-identifier">each</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">outcome</span><span class="ruby-operator">|</span>
|
|
871
|
+
160: <span class="ruby-identifier">y</span>.<span class="ruby-identifier">set_value</span>(<span class="ruby-identifier">outcome</span>)
|
|
872
|
+
161: <span class="ruby-identifier">prob</span> = <span class="ruby-identifier">prob</span> <span class="ruby-operator">+</span> <span class="ruby-identifier">p_v_cond_parents</span>(<span class="ruby-identifier">y</span>) <span class="ruby-operator">*</span> <span class="ruby-identifier">enumerate_all</span>(<span class="ruby-identifier">vars</span><span class="ruby-operator">-</span>[<span class="ruby-identifier">y</span>], <span class="ruby-identifier">e</span><span class="ruby-operator">+</span>[<span class="ruby-identifier">y</span>])
|
|
873
|
+
162: <span class="ruby-identifier">y</span>.<span class="ruby-identifier">clear_value</span>
|
|
874
|
+
163: }
|
|
875
|
+
164: <span class="ruby-keyword kw">return</span> <span class="ruby-identifier">prob</span>
|
|
876
|
+
165: <span class="ruby-keyword kw">end</span>
|
|
877
|
+
166: <span class="ruby-keyword kw">end</span>
|
|
878
|
+
</pre>
|
|
879
|
+
</div>
|
|
880
|
+
</div>
|
|
881
|
+
</div>
|
|
882
|
+
<div class="method">
|
|
883
|
+
<div class="title">
|
|
884
|
+
<a name="M000029"></a><b>get_vector_value</b>(vertices_vector, bn_vertices_ordered)
|
|
885
|
+
</div>
|
|
886
|
+
<div class="description">
|
|
887
|
+
<p>
|
|
888
|
+
Axiliar function that returns an array of bn_vertices_ordered.size
|
|
889
|
+
positions with nil if position aren’t in vertices_vector, and value
|
|
890
|
+
if there’s a match in vertices_vector.
|
|
891
|
+
</p>
|
|
892
|
+
</div>
|
|
893
|
+
<div class="sourcecode">
|
|
894
|
+
<p class="source-link">[ <a href="javascript:toggleSource('M000029_source')" id="l_M000029_source">show source</a> ]</p>
|
|
895
|
+
<div id="M000029_source" class="dyn-source">
|
|
896
|
+
<pre>
|
|
897
|
+
<span class="ruby-comment cmt"># File lib/bn4r/bn_algorithms.rb, line 208</span>
|
|
898
|
+
208: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">get_vector_value</span>(<span class="ruby-identifier">vertices_vector</span>, <span class="ruby-identifier">bn_vertices_ordered</span>)
|
|
899
|
+
209: <span class="ruby-identifier">bn_vertices_ordered</span>.<span class="ruby-identifier">collect</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">v</span><span class="ruby-operator">|</span>
|
|
900
|
+
210: <span class="ruby-keyword kw">if</span> <span class="ruby-operator">!</span><span class="ruby-identifier">vertices_vector</span>.<span class="ruby-identifier">nil?</span>
|
|
901
|
+
211: <span class="ruby-identifier">node_actual</span> = <span class="ruby-identifier">vertices_vector</span>.<span class="ruby-identifier">select</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">node</span><span class="ruby-operator">|</span> <span class="ruby-identifier">node</span>.<span class="ruby-identifier">name</span> <span class="ruby-operator">==</span> <span class="ruby-identifier">v</span>.<span class="ruby-identifier">name</span> }
|
|
902
|
+
212:
|
|
903
|
+
213: <span class="ruby-keyword kw">case</span> <span class="ruby-identifier">node_actual</span>.<span class="ruby-identifier">size</span>
|
|
904
|
+
214: <span class="ruby-keyword kw">when</span> <span class="ruby-value">0</span>
|
|
905
|
+
215: <span class="ruby-keyword kw">nil</span>
|
|
906
|
+
216: <span class="ruby-keyword kw">when</span> <span class="ruby-value">1</span>
|
|
907
|
+
217: <span class="ruby-identifier">node_actual</span>[<span class="ruby-value">0</span>].<span class="ruby-identifier">value</span>
|
|
908
|
+
218: <span class="ruby-keyword kw">else</span>
|
|
909
|
+
219: <span class="ruby-identifier">raise</span> <span class="ruby-value str">"Error in get_vector_value"</span>
|
|
910
|
+
220: <span class="ruby-keyword kw">end</span>
|
|
911
|
+
221: <span class="ruby-keyword kw">else</span>
|
|
912
|
+
222: <span class="ruby-keyword kw">nil</span>
|
|
913
|
+
223: <span class="ruby-keyword kw">end</span>
|
|
914
|
+
224: }
|
|
915
|
+
225: <span class="ruby-keyword kw">end</span>
|
|
916
|
+
</pre>
|
|
917
|
+
</div>
|
|
918
|
+
</div>
|
|
919
|
+
</div>
|
|
920
|
+
<div class="method">
|
|
921
|
+
<div class="title">
|
|
922
|
+
<a name="M000028"></a><b>weighted_sample</b>(e, bn = self)
|
|
923
|
+
</div>
|
|
924
|
+
<div class="description">
|
|
925
|
+
<p>
|
|
926
|
+
Returns an event and a weight.
|
|
927
|
+
</p>
|
|
928
|
+
<p>
|
|
929
|
+
Implementation based on: S.Russell, P.Norving, "Artificial
|
|
930
|
+
Intelligence, A Modern Approach", 2nd Edition. pp 515
|
|
931
|
+
</p>
|
|
932
|
+
<p>
|
|
933
|
+
<b>e</b> —> variables with observed values
|
|
934
|
+
</p>
|
|
935
|
+
<p>
|
|
936
|
+
WARNING: Clears the values of current bn!
|
|
937
|
+
</p>
|
|
938
|
+
</div>
|
|
939
|
+
<div class="sourcecode">
|
|
940
|
+
<p class="source-link">[ <a href="javascript:toggleSource('M000028_source')" id="l_M000028_source">show source</a> ]</p>
|
|
941
|
+
<div id="M000028_source" class="dyn-source">
|
|
942
|
+
<pre>
|
|
943
|
+
<span class="ruby-comment cmt"># File lib/bn4r/bn_algorithms.rb, line 176</span>
|
|
944
|
+
176: <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">weighted_sample</span>(<span class="ruby-identifier">e</span>, <span class="ruby-identifier">bn</span> = <span class="ruby-keyword kw">self</span>)
|
|
945
|
+
177:
|
|
946
|
+
178: <span class="ruby-identifier">nodes_ordered</span> = <span class="ruby-identifier">bn</span>.<span class="ruby-identifier">nodes_ordered_by_dependencies</span>
|
|
947
|
+
179:
|
|
948
|
+
180: <span class="ruby-identifier">sample</span> = <span class="ruby-constant">Array</span>.<span class="ruby-identifier">new</span>
|
|
949
|
+
181: <span class="ruby-identifier">w</span> = <span class="ruby-value">1.0</span>
|
|
950
|
+
182: <span class="ruby-identifier">nodes_ordered</span>.<span class="ruby-identifier">each</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">v</span><span class="ruby-operator">|</span>
|
|
951
|
+
183: <span class="ruby-identifier">node_actual</span> = <span class="ruby-identifier">e</span>.<span class="ruby-identifier">select</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">node</span><span class="ruby-operator">|</span> <span class="ruby-identifier">node</span>.<span class="ruby-identifier">name</span> <span class="ruby-operator">==</span> <span class="ruby-identifier">v</span>.<span class="ruby-identifier">name</span> } <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">e</span>.<span class="ruby-identifier">class</span> <span class="ruby-operator">==</span> <span class="ruby-constant">Array</span>
|
|
952
|
+
184: <span class="ruby-identifier">node_actual</span> = [<span class="ruby-identifier">e</span>] <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">e</span>.<span class="ruby-identifier">class</span> <span class="ruby-operator">==</span> <span class="ruby-constant">BayesNetNode</span> <span class="ruby-keyword kw">and</span> <span class="ruby-identifier">e</span>.<span class="ruby-identifier">name</span> <span class="ruby-operator">==</span> <span class="ruby-identifier">v</span>.<span class="ruby-identifier">name</span>
|
|
953
|
+
185: <span class="ruby-keyword kw">if</span> <span class="ruby-operator">!</span><span class="ruby-identifier">node_actual</span>.<span class="ruby-identifier">nil?</span> <span class="ruby-keyword kw">and</span> <span class="ruby-identifier">node_actual</span>.<span class="ruby-identifier">size</span> <span class="ruby-operator">==</span> <span class="ruby-value">1</span>
|
|
954
|
+
186: <span class="ruby-identifier">value</span> = <span class="ruby-identifier">node_actual</span>[<span class="ruby-value">0</span>].<span class="ruby-identifier">value</span>
|
|
955
|
+
187: <span class="ruby-identifier">w</span> = <span class="ruby-identifier">w</span> <span class="ruby-operator">*</span> <span class="ruby-identifier">v</span>.<span class="ruby-identifier">get_probability</span>(<span class="ruby-identifier">value</span>)
|
|
956
|
+
188: <span class="ruby-keyword kw">else</span>
|
|
957
|
+
189: <span class="ruby-identifier">rand_sample</span> = <span class="ruby-identifier">rand</span>; <span class="ruby-identifier">i_tmp</span> = <span class="ruby-value">0</span><span class="ruby-value">.0</span>
|
|
958
|
+
190: <span class="ruby-identifier">v</span>.<span class="ruby-identifier">outcomes</span>.<span class="ruby-identifier">each</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">outcome</span><span class="ruby-operator">|</span>
|
|
959
|
+
191: <span class="ruby-identifier">value</span> = <span class="ruby-identifier">outcome</span>
|
|
960
|
+
192: <span class="ruby-identifier">i_tmp</span> <span class="ruby-operator">+=</span> <span class="ruby-identifier">v</span>.<span class="ruby-identifier">get_probability</span>(<span class="ruby-identifier">value</span>)
|
|
961
|
+
193: <span class="ruby-keyword kw">break</span> <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">i_tmp</span> <span class="ruby-operator">></span> <span class="ruby-identifier">rand_sample</span>
|
|
962
|
+
194: }
|
|
963
|
+
195: <span class="ruby-keyword kw">end</span>
|
|
964
|
+
196: <span class="ruby-identifier">v</span>.<span class="ruby-identifier">set_value</span>(<span class="ruby-identifier">value</span>)
|
|
965
|
+
197: <span class="ruby-identifier">sample</span> <span class="ruby-operator"><<</span> <span class="ruby-identifier">v</span>.<span class="ruby-identifier">copy</span>
|
|
966
|
+
198: }
|
|
967
|
+
199:
|
|
968
|
+
200: <span class="ruby-comment cmt"># leave the bn clear of values.
|
|
969
|
+
201: <span class="ruby-identifier">bn</span>.<span class="ruby-identifier">clear_values!</span>
|
|
970
|
+
202: <span class="ruby-keyword kw">return</span> <span class="ruby-identifier">sample</span>, <span class="ruby-identifier">w</span>
|
|
971
|
+
203: <span class="ruby-keyword kw">end</span>
|
|
972
|
+
</pre>
|
|
973
|
+
</div>
|
|
974
|
+
</div>
|
|
975
|
+
</div>
|
|
976
|
+
</div>
|
|
977
|
+
|
|
978
|
+
</div>
|
|
979
|
+
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|
980
|
+
<script src="http://www.google-analytics.com/urchin.js" type="text/javascript">
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981
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+
</script>
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982
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+
<script type="text/javascript">
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|
983
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+
_uacct = "UA-262540-7";
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|
984
|
+
urchinTracker();
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985
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+
</script>
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986
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</body>
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561
987
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</html>
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