bn4r 0.1.2 → 0.9.0

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Files changed (432) hide show
  1. data/CHANGELOG +15 -1
  2. data/README +9 -2
  3. data/doc/classes/BNTPGFromPositiveNegativeRelations.html +184 -171
  4. data/doc/classes/BNTPGFromPositiveNegativeRelations.src/M000031.html +20 -20
  5. data/doc/classes/BNTPGFromPositiveNegativeRelations.src/M000032.html +15 -15
  6. data/doc/classes/BayesNet.html +986 -560
  7. data/doc/classes/BayesNet.src/M000003.html +19 -17
  8. data/doc/classes/BayesNet.src/M000004.html +34 -16
  9. data/doc/classes/BayesNet.src/M000005.html +24 -17
  10. data/doc/classes/BayesNet.src/M000006.html +18 -18
  11. data/doc/classes/BayesNet.src/M000007.html +21 -17
  12. data/doc/classes/BayesNet.src/M000008.html +17 -19
  13. data/doc/classes/BayesNet.src/M000009.html +17 -18
  14. data/doc/classes/BayesNet.src/M000010.html +18 -17
  15. data/doc/classes/BayesNet.src/M000011.html +17 -22
  16. data/doc/classes/BayesNet.src/M000012.html +17 -24
  17. data/doc/classes/BayesNet.src/M000013.html +17 -26
  18. data/doc/classes/BayesNet.src/M000014.html +20 -42
  19. data/doc/classes/BayesNet.src/M000015.html +18 -33
  20. data/doc/classes/BayesNet.src/M000016.html +17 -38
  21. data/doc/classes/BayesNet.src/M000017.html +17 -37
  22. data/doc/classes/BayesNet.src/M000018.html +19 -32
  23. data/doc/classes/BayesNet.src/M000019.html +18 -19
  24. data/doc/classes/BayesNet.src/M000020.html +17 -35
  25. data/doc/classes/BayesNet.src/M000021.html +22 -52
  26. data/doc/classes/BayesNet.src/M000022.html +22 -16
  27. data/doc/classes/BayesNet.src/M000023.html +24 -17
  28. data/doc/classes/BayesNet.src/M000024.html +30 -16
  29. data/doc/classes/BayesNet.src/M000025.html +42 -18
  30. data/doc/classes/BayesNet.src/M000026.html +32 -16
  31. data/doc/classes/BayesNet.src/M000027.html +38 -19
  32. data/doc/classes/BayesNet.src/M000028.html +42 -18
  33. data/doc/classes/BayesNet.src/M000029.html +32 -17
  34. data/doc/classes/BayesNet.src/M000030.html +52 -22
  35. data/doc/classes/BayesNetNode.html +604 -476
  36. data/doc/classes/BayesNetNode.src/M000033.html +21 -17
  37. data/doc/classes/BayesNetNode.src/M000034.html +17 -17
  38. data/doc/classes/BayesNetNode.src/M000035.html +20 -25
  39. data/doc/classes/BayesNetNode.src/M000036.html +17 -17
  40. data/doc/classes/BayesNetNode.src/M000037.html +17 -19
  41. data/doc/classes/BayesNetNode.src/M000038.html +17 -17
  42. data/doc/classes/BayesNetNode.src/M000039.html +17 -22
  43. data/doc/classes/BayesNetNode.src/M000040.html +17 -51
  44. data/doc/classes/BayesNetNode.src/M000041.html +21 -18
  45. data/doc/classes/BayesNetNode.src/M000042.html +18 -17
  46. data/doc/classes/BayesNetNode.src/M000043.html +17 -17
  47. data/doc/classes/BayesNetNode.src/M000044.html +17 -25
  48. data/doc/classes/BayesNetNode.src/M000045.html +24 -16
  49. data/doc/classes/BayesNetNode.src/M000046.html +17 -19
  50. data/doc/classes/BayesNetNode.src/M000047.html +19 -17
  51. data/doc/classes/BayesNetNode.src/M000048.html +17 -22
  52. data/doc/classes/BayesNetNode.src/M000049.html +23 -51
  53. data/doc/classes/BayesNetNode.src/M000050.html +51 -21
  54. data/doc/classes/BnTableProbabilitiesGenerator.html +122 -142
  55. data/doc/classes/BnTableProbabilitiesGenerator.src/{M000036.html → M000051.html} +15 -15
  56. data/doc/created.rid +1 -1
  57. data/doc/files/README.html +267 -264
  58. data/doc/files/README_es.html +271 -0
  59. data/doc/files/lib/bn4r/bn_algorithms_rb.html +125 -130
  60. data/doc/files/lib/bn4r/bn_export_rb.html +119 -124
  61. data/doc/files/lib/bn4r/bn_import_rb.html +133 -144
  62. data/doc/files/lib/bn4r/bn_rb.html +124 -134
  63. data/doc/files/lib/bn4r/bn_table_probabilities_rb.html +165 -140
  64. data/doc/files/lib/bn4r/bn_table_probabilities_rb.src/M000001.html +15 -15
  65. data/doc/files/lib/bn4r/bn_table_probabilities_rb.src/M000002.html +26 -0
  66. data/doc/files/lib/bn4r/version_rb.html +97 -100
  67. data/doc/files/lib/bn4r_rb.html +108 -113
  68. data/doc/fr_class_index.html +49 -30
  69. data/doc/fr_file_index.html +54 -34
  70. data/doc/fr_method_index.html +96 -67
  71. data/doc/index.html +25 -23
  72. data/doc/rdoc-style.css +175 -208
  73. data/lib/bn4r/bn.rb +76 -5
  74. data/lib/bn4r/bn_algorithms.rb +13 -3
  75. data/lib/bn4r/bn_export.rb +29 -15
  76. data/lib/bn4r/bn_table_probabilities.rb +10 -0
  77. data/lib/bn4r/version.rb +2 -2
  78. data/test/bn4r_test.rb +104 -0
  79. data/test/test_helper.rb +1 -0
  80. metadata +15 -393
  81. data/doc/classes/BNTPGFromPositiveNegativeRelations.src/M000018.html +0 -41
  82. data/doc/classes/BNTPGFromPositiveNegativeRelations.src/M000019.html +0 -23
  83. data/doc/classes/BNTPGFromPositiveNegativeRelations.src/M000021.html +0 -41
  84. data/doc/classes/BNTPGFromPositiveNegativeRelations.src/M000022.html +0 -41
  85. data/doc/classes/BNTPGFromPositiveNegativeRelations.src/M000023.html +0 -23
  86. data/doc/classes/BNTPGFromPositiveNegativeRelations.src/M000143.html +0 -41
  87. data/doc/classes/BNTPGFromPositiveNegativeRelations.src/M000144.html +0 -23
  88. data/doc/classes/BNTPGFromPositiveNegativeRelations.src/M000145.html +0 -41
  89. data/doc/classes/BNTPGFromPositiveNegativeRelations.src/M000146.html +0 -23
  90. data/doc/classes/BayesNet.src/M000001.html +0 -22
  91. data/doc/classes/BayesNet.src/M000002.html +0 -25
  92. data/doc/classes/BayesNet.src/M000091.html +0 -25
  93. data/doc/classes/BayesNet.src/M000092.html +0 -18
  94. data/doc/classes/BayesNet.src/M000093.html +0 -18
  95. data/doc/classes/BayesNet.src/M000094.html +0 -18
  96. data/doc/classes/BayesNet.src/M000095.html +0 -19
  97. data/doc/classes/BayesNet.src/M000096.html +0 -18
  98. data/doc/classes/BayesNet.src/M000097.html +0 -20
  99. data/doc/classes/BayesNet.src/M000098.html +0 -19
  100. data/doc/classes/BayesNet.src/M000099.html +0 -18
  101. data/doc/classes/BayesNet.src/M000100.html +0 -23
  102. data/doc/classes/BayesNet.src/M000101.html +0 -25
  103. data/doc/classes/BayesNet.src/M000102.html +0 -27
  104. data/doc/classes/BayesNet.src/M000103.html +0 -43
  105. data/doc/classes/BayesNet.src/M000104.html +0 -34
  106. data/doc/classes/BayesNet.src/M000105.html +0 -39
  107. data/doc/classes/BayesNet.src/M000106.html +0 -38
  108. data/doc/classes/BayesNet.src/M000107.html +0 -33
  109. data/doc/classes/BayesNet.src/M000108.html +0 -18
  110. data/doc/classes/BayesNet.src/M000109.html +0 -35
  111. data/doc/classes/BayesNet.src/M000110.html +0 -22
  112. data/doc/classes/BayesNet.src/M000111.html +0 -18
  113. data/doc/classes/BayesNet.src/M000112.html +0 -18
  114. data/doc/classes/BayesNet.src/M000113.html +0 -18
  115. data/doc/classes/BayesNet.src/M000114.html +0 -19
  116. data/doc/classes/BayesNet.src/M000115.html +0 -18
  117. data/doc/classes/BayesNet.src/M000116.html +0 -20
  118. data/doc/classes/BayesNet.src/M000117.html +0 -19
  119. data/doc/classes/BayesNet.src/M000118.html +0 -18
  120. data/doc/classes/BayesNet.src/M000119.html +0 -23
  121. data/doc/classes/BayesNet.src/M000120.html +0 -25
  122. data/doc/classes/BayesNet.src/M000121.html +0 -27
  123. data/doc/classes/BayesNet.src/M000122.html +0 -43
  124. data/doc/classes/BayesNet.src/M000123.html +0 -33
  125. data/doc/classes/BayesNet.src/M000124.html +0 -39
  126. data/doc/classes/BayesNet.src/M000125.html +0 -38
  127. data/doc/classes/BayesNet.src/M000126.html +0 -33
  128. data/doc/classes/BayesNetNode.src/M000020.html +0 -22
  129. data/doc/classes/BayesNetNode.src/M000021.html +0 -21
  130. data/doc/classes/BayesNetNode.src/M000022.html +0 -18
  131. data/doc/classes/BayesNetNode.src/M000023.html +0 -22
  132. data/doc/classes/BayesNetNode.src/M000024.html +0 -22
  133. data/doc/classes/BayesNetNode.src/M000025.html +0 -21
  134. data/doc/classes/BayesNetNode.src/M000026.html +0 -18
  135. data/doc/classes/BayesNetNode.src/M000027.html +0 -18
  136. data/doc/classes/BayesNetNode.src/M000028.html +0 -18
  137. data/doc/classes/BayesNetNode.src/M000029.html +0 -18
  138. data/doc/classes/BayesNetNode.src/M000030.html +0 -18
  139. data/doc/classes/BayesNetNode.src/M000031.html +0 -19
  140. data/doc/classes/BayesNetNode.src/M000032.html +0 -19
  141. data/doc/classes/BayesNetNode.src/M000051.html +0 -21
  142. data/doc/classes/BayesNetNode.src/M000052.html +0 -18
  143. data/doc/classes/BayesNetNode.src/M000053.html +0 -18
  144. data/doc/classes/BayesNetNode.src/M000054.html +0 -18
  145. data/doc/classes/BayesNetNode.src/M000055.html +0 -18
  146. data/doc/classes/BayesNetNode.src/M000056.html +0 -18
  147. data/doc/classes/BayesNetNode.src/M000057.html +0 -19
  148. data/doc/classes/BayesNetNode.src/M000058.html +0 -19
  149. data/doc/classes/BayesNetNode.src/M000059.html +0 -18
  150. data/doc/classes/BayesNetNode.src/M000060.html +0 -18
  151. data/doc/classes/BayesNetNode.src/M000061.html +0 -26
  152. data/doc/classes/BayesNetNode.src/M000062.html +0 -18
  153. data/doc/classes/BayesNetNode.src/M000063.html +0 -20
  154. data/doc/classes/BayesNetNode.src/M000064.html +0 -18
  155. data/doc/classes/BayesNetNode.src/M000065.html +0 -23
  156. data/doc/classes/BayesNetNode.src/M000066.html +0 -52
  157. data/doc/classes/BayesNetNode.src/M000147.html +0 -22
  158. data/doc/classes/BayesNetNode.src/M000148.html +0 -21
  159. data/doc/classes/BayesNetNode.src/M000149.html +0 -18
  160. data/doc/classes/BayesNetNode.src/M000150.html +0 -18
  161. data/doc/classes/BayesNetNode.src/M000151.html +0 -18
  162. data/doc/classes/BayesNetNode.src/M000152.html +0 -18
  163. data/doc/classes/BayesNetNode.src/M000153.html +0 -18
  164. data/doc/classes/BayesNetNode.src/M000154.html +0 -19
  165. data/doc/classes/BayesNetNode.src/M000155.html +0 -19
  166. data/doc/classes/BayesNetNode.src/M000156.html +0 -18
  167. data/doc/classes/BayesNetNode.src/M000157.html +0 -18
  168. data/doc/classes/BayesNetNode.src/M000158.html +0 -26
  169. data/doc/classes/BayesNetNode.src/M000159.html +0 -18
  170. data/doc/classes/BayesNetNode.src/M000160.html +0 -20
  171. data/doc/classes/BayesNetNode.src/M000161.html +0 -18
  172. data/doc/classes/BayesNetNode.src/M000162.html +0 -23
  173. data/doc/classes/BayesNetNode.src/M000163.html +0 -52
  174. data/doc/classes/BayesNetNode.src/M000164.html +0 -22
  175. data/doc/classes/BayesNetNode.src/M000165.html +0 -21
  176. data/doc/classes/BayesNetNode.src/M000166.html +0 -18
  177. data/doc/classes/BayesNetNode.src/M000167.html +0 -18
  178. data/doc/classes/BayesNetNode.src/M000168.html +0 -18
  179. data/doc/classes/BayesNetNode.src/M000169.html +0 -18
  180. data/doc/classes/BayesNetNode.src/M000170.html +0 -18
  181. data/doc/classes/BayesNetNode.src/M000171.html +0 -19
  182. data/doc/classes/BayesNetNode.src/M000172.html +0 -18
  183. data/doc/classes/BayesNetNode.src/M000173.html +0 -18
  184. data/doc/classes/BayesNetNode.src/M000174.html +0 -26
  185. data/doc/classes/BayesNetNode.src/M000175.html +0 -18
  186. data/doc/classes/BayesNetNode.src/M000176.html +0 -20
  187. data/doc/classes/BayesNetNode.src/M000177.html +0 -18
  188. data/doc/classes/BayesNetNode.src/M000178.html +0 -23
  189. data/doc/classes/BayesNetNode.src/M000179.html +0 -52
  190. data/doc/classes/Bn4rTest.html +0 -549
  191. data/doc/classes/Bn4rTest.src/M000180.html +0 -17
  192. data/doc/classes/Bn4rTest.src/M000181.html +0 -21
  193. data/doc/classes/Bn4rTest.src/M000182.html +0 -21
  194. data/doc/classes/Bn4rTest.src/M000183.html +0 -34
  195. data/doc/classes/Bn4rTest.src/M000184.html +0 -27
  196. data/doc/classes/Bn4rTest.src/M000185.html +0 -23
  197. data/doc/classes/Bn4rTest.src/M000186.html +0 -42
  198. data/doc/classes/Bn4rTest.src/M000187.html +0 -39
  199. data/doc/classes/Bn4rTest.src/M000188.html +0 -25
  200. data/doc/classes/Bn4rTest.src/M000189.html +0 -45
  201. data/doc/classes/Bn4rTest.src/M000190.html +0 -32
  202. data/doc/classes/Bn4rTest.src/M000191.html +0 -32
  203. data/doc/classes/Bn4rTest.src/M000192.html +0 -45
  204. data/doc/classes/Bn4rTest.src/M000193.html +0 -41
  205. data/doc/classes/Bn4rTest.src/M000194.html +0 -42
  206. data/doc/classes/Bn4rTest.src/M000195.html +0 -17
  207. data/doc/classes/Bn4rTest.src/M000196.html +0 -21
  208. data/doc/classes/Bn4rTest.src/M000197.html +0 -21
  209. data/doc/classes/Bn4rTest.src/M000198.html +0 -34
  210. data/doc/classes/Bn4rTest.src/M000199.html +0 -27
  211. data/doc/classes/Bn4rTest.src/M000200.html +0 -23
  212. data/doc/classes/Bn4rTest.src/M000201.html +0 -42
  213. data/doc/classes/Bn4rTest.src/M000202.html +0 -39
  214. data/doc/classes/Bn4rTest.src/M000203.html +0 -25
  215. data/doc/classes/Bn4rTest.src/M000204.html +0 -45
  216. data/doc/classes/Bn4rTest.src/M000205.html +0 -32
  217. data/doc/classes/Bn4rTest.src/M000206.html +0 -32
  218. data/doc/classes/BnTableProbabilitiesGenerator.src/M000040.html +0 -18
  219. data/doc/classes/BnTableProbabilitiesGenerator.src/M000041.html +0 -18
  220. data/doc/classes/BnTableProbabilitiesGenerator.src/M000067.html +0 -18
  221. data/doc/classes/BnTableProbabilitiesGenerator.src/M000207.html +0 -18
  222. data/doc/classes/BnTableProbabilitiesGenerator.src/M000208.html +0 -18
  223. data/doc/classes/ConfigTable.html +0 -500
  224. data/doc/classes/ConfigTable.src/M000007.html +0 -25
  225. data/doc/classes/ConfigTable.src/M000008.html +0 -18
  226. data/doc/classes/ConfigTable.src/M000009.html +0 -18
  227. data/doc/classes/ConfigTable.src/M000010.html +0 -18
  228. data/doc/classes/ConfigTable.src/M000011.html +0 -18
  229. data/doc/classes/ConfigTable.src/M000012.html +0 -18
  230. data/doc/classes/ConfigTable.src/M000013.html +0 -18
  231. data/doc/classes/ConfigTable.src/M000014.html +0 -18
  232. data/doc/classes/ConfigTable.src/M000015.html +0 -18
  233. data/doc/classes/ConfigTable.src/M000016.html +0 -19
  234. data/doc/classes/ConfigTable.src/M000017.html +0 -21
  235. data/doc/classes/ConfigTable.src/M000018.html +0 -20
  236. data/doc/classes/ConfigTable.src/M000019.html +0 -18
  237. data/doc/classes/ConfigTable.src/M000020.html +0 -25
  238. data/doc/classes/ConfigTable.src/M000021.html +0 -23
  239. data/doc/classes/ConfigTable.src/M000022.html +0 -20
  240. data/doc/classes/ConfigTable.src/M000023.html +0 -20
  241. data/doc/classes/ConfigTable.src/M000024.html +0 -23
  242. data/doc/classes/ConfigTable.src/M000025.html +0 -19
  243. data/doc/classes/ConfigTable.src/M000026.html +0 -18
  244. data/doc/classes/ConfigTable.src/M000027.html +0 -18
  245. data/doc/classes/ConfigTable/BoolItem.html +0 -154
  246. data/doc/classes/ConfigTable/BoolItem.src/M000028.html +0 -18
  247. data/doc/classes/ConfigTable/BoolItem.src/M000029.html +0 -18
  248. data/doc/classes/ConfigTable/ExecItem.html +0 -201
  249. data/doc/classes/ConfigTable/ExecItem.src/M000047.html +0 -20
  250. data/doc/classes/ConfigTable/ExecItem.src/M000048.html +0 -18
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  254. data/doc/classes/ConfigTable/Item.html +0 -250
  255. data/doc/classes/ConfigTable/Item.src/M000054.html +0 -22
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  260. data/doc/classes/ConfigTable/Item.src/M000059.html +0 -18
  261. data/doc/classes/ConfigTable/MetaConfigEnvironment.html +0 -325
  262. data/doc/classes/ConfigTable/MetaConfigEnvironment.src/M000034.html +0 -19
  263. data/doc/classes/ConfigTable/MetaConfigEnvironment.src/M000035.html +0 -18
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  274. data/doc/classes/ConfigTable/MetaConfigEnvironment.src/M000046.html +0 -19
  275. data/doc/classes/ConfigTable/PackageSelectionItem.html +0 -169
  276. data/doc/classes/ConfigTable/PackageSelectionItem.src/M000032.html +0 -19
  277. data/doc/classes/ConfigTable/PackageSelectionItem.src/M000033.html +0 -18
  278. data/doc/classes/ConfigTable/PathItem.html +0 -139
  279. data/doc/classes/ConfigTable/PathItem.src/M000031.html +0 -18
  280. data/doc/classes/ConfigTable/ProgramItem.html +0 -139
  281. data/doc/classes/ConfigTable/ProgramItem.src/M000030.html +0 -18
  282. data/doc/classes/ConfigTable/SelectItem.html +0 -156
  283. data/doc/classes/ConfigTable/SelectItem.src/M000052.html +0 -19
  284. data/doc/classes/ConfigTable/SelectItem.src/M000053.html +0 -18
  285. data/doc/classes/Enumerable.html +0 -118
  286. data/doc/classes/Errno.html +0 -111
  287. data/doc/classes/Errno/ENOTEMPTY.html +0 -111
  288. data/doc/classes/File.html +0 -166
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  291. data/doc/classes/File.src/M000278.html +0 -18
  292. data/doc/classes/FileOperations.html +0 -375
  293. data/doc/classes/FileOperations.src/M000291.html +0 -31
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- <head>
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- <title>get_probability (BayesNetNode)</title>
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- <body class="standalone-code">
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- <pre><span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 207</span>
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- <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">get_probability</span>(<span class="ruby-identifier">node_assignment</span> = <span class="ruby-identifier">value</span>, <span class="ruby-identifier">givens_assignments</span> = <span class="ruby-identifier">parents_assignments</span>)
15
- <span class="ruby-comment cmt"># raise &quot;Node must have a value and a givens_assignments, otherwise put&quot; # + &quot;them in function call&quot; if node_assignment.nil? or givens_assignments.nil?</span>
16
- <span class="ruby-comment cmt"># if there's a cached table take the index</span>
17
- <span class="ruby-keyword kw">return</span> <span class="ruby-ivar">@table</span>[<span class="ruby-identifier">get_table_index</span>(<span class="ruby-identifier">node_assignment</span>, <span class="ruby-identifier">givens_assignments</span>)] <span class="ruby-keyword kw">if</span> <span class="ruby-ivar">@table_is_a_proc</span>.<span class="ruby-identifier">nil?</span> <span class="ruby-keyword kw">or</span> <span class="ruby-operator">!</span><span class="ruby-ivar">@table_is_a_proc</span>
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- <span class="ruby-comment cmt"># if the value is calculated on the fly using a function instead of</span>
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- <span class="ruby-comment cmt"># a table</span>
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- <span class="ruby-keyword kw">return</span> <span class="ruby-ivar">@table</span>[<span class="ruby-identifier">node_assignment</span>, <span class="ruby-identifier">givens_assignments</span>]
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- <pre><span class="ruby-comment cmt"># File lib/bn4r/bn.rb, line 219</span>
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- <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">get_table_index</span>(<span class="ruby-identifier">node_assignment</span>, <span class="ruby-identifier">givens_assignments</span>)
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- <span class="ruby-identifier">x</span> = []
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- <span class="ruby-identifier">indices</span> = []
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- <span class="ruby-identifier">index</span> = <span class="ruby-value">0</span>
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-
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- <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">givens_assignments</span>.<span class="ruby-identifier">length</span> <span class="ruby-operator">!=</span> <span class="ruby-ivar">@givens</span>.<span class="ruby-identifier">length</span>
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- <span class="ruby-identifier">raise</span> <span class="ruby-value str">&quot;Error. Number of assignments does not match node.&quot;</span>
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- <span class="ruby-keyword kw">end</span>
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-
23
- <span class="ruby-keyword kw">if</span> <span class="ruby-ivar">@givens</span>.<span class="ruby-identifier">length</span> <span class="ruby-operator">&gt;</span> <span class="ruby-value">0</span>
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- <span class="ruby-comment cmt"># create a indices array with the position of each value of</span>
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- <span class="ruby-comment cmt"># given assignments.</span>
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- <span class="ruby-identifier">givens_assignments</span>.<span class="ruby-identifier">length</span>.<span class="ruby-identifier">times</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">i</span><span class="ruby-operator">|</span>
27
- <span class="ruby-identifier">assignment</span> = <span class="ruby-identifier">givens_assignments</span>[<span class="ruby-identifier">i</span>]
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- <span class="ruby-identifier">indices</span>[<span class="ruby-identifier">i</span>] = <span class="ruby-ivar">@givens</span>[<span class="ruby-identifier">i</span>].<span class="ruby-identifier">outcomes</span>.<span class="ruby-identifier">index</span>(<span class="ruby-identifier">assignment</span>)
29
- }
30
-
31
- <span class="ruby-comment cmt"># create a array with the number of possible values each</span>
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- <span class="ruby-comment cmt"># given node and this node itself can have ( node.outcomes.length )</span>
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- <span class="ruby-comment cmt"># plus all next nodes.</span>
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- <span class="ruby-identifier">x</span>[<span class="ruby-identifier">givens_assignments</span>.<span class="ruby-identifier">length</span><span class="ruby-operator">-</span><span class="ruby-value">1</span>] = <span class="ruby-ivar">@outcomes</span>.<span class="ruby-identifier">length</span>
35
- (<span class="ruby-identifier">givens_assignments</span>.<span class="ruby-identifier">length</span><span class="ruby-operator">-</span><span class="ruby-value">2</span>).<span class="ruby-identifier">downto</span>(<span class="ruby-value">0</span>) { <span class="ruby-operator">|</span><span class="ruby-identifier">j</span><span class="ruby-operator">|</span>
36
- <span class="ruby-identifier">x</span>[<span class="ruby-identifier">j</span>] = <span class="ruby-identifier">x</span>[<span class="ruby-identifier">j</span><span class="ruby-operator">+</span><span class="ruby-value">1</span>] <span class="ruby-operator">*</span> <span class="ruby-ivar">@givens</span>[<span class="ruby-identifier">j</span><span class="ruby-operator">+</span><span class="ruby-value">1</span>].<span class="ruby-identifier">outcomes</span>.<span class="ruby-identifier">length</span>
37
- }
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-
39
- <span class="ruby-comment cmt"># to get the index, sum for each assignment the</span>
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- <span class="ruby-comment cmt"># product of each given assignment outcomes size</span>
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- <span class="ruby-comment cmt"># by its value index.</span>
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- <span class="ruby-identifier">givens_assignments</span>.<span class="ruby-identifier">length</span>.<span class="ruby-identifier">times</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">i</span><span class="ruby-operator">|</span>
43
- <span class="ruby-identifier">index</span> <span class="ruby-operator">+=</span> <span class="ruby-identifier">x</span>[<span class="ruby-identifier">i</span>] <span class="ruby-operator">*</span> <span class="ruby-identifier">indices</span>[<span class="ruby-identifier">i</span>]
44
- }
45
- <span class="ruby-keyword kw">end</span>
46
-
47
- <span class="ruby-identifier">index</span> <span class="ruby-operator">+=</span> <span class="ruby-ivar">@outcomes</span>.<span class="ruby-identifier">index</span>(<span class="ruby-identifier">node_assignment</span>)
48
-
49
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- <span class="ruby-keyword kw">end</span></pre>
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- <pre><span class="ruby-comment cmt"># File pkg/bn4r-0.1.0/lib/bn4r/bn.rb, line 106</span>
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- <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">initialize</span> ( <span class="ruby-identifier">name</span> , <span class="ruby-identifier">outcomes</span> = [<span class="ruby-keyword kw">true</span>, <span class="ruby-keyword kw">false</span>], <span class="ruby-identifier">extra_info</span> = <span class="ruby-keyword kw">nil</span>)
15
- <span class="ruby-ivar">@name</span> = <span class="ruby-identifier">name</span>
16
- <span class="ruby-ivar">@outcomes</span> = <span class="ruby-identifier">outcomes</span>
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- <span class="ruby-ivar">@extra_info</span> = <span class="ruby-identifier">extra_info</span>
18
- <span class="ruby-ivar">@givens</span> = []
19
- <span class="ruby-ivar">@relations</span> = []
20
- <span class="ruby-keyword kw">end</span></pre>
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- <pre><span class="ruby-comment cmt"># File pkg/bn4r-0.1.0/lib/bn4r/bn.rb, line 115</span>
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- <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">copy</span>
15
- <span class="ruby-identifier">tmp</span> = <span class="ruby-constant">BayesNetNode</span>.<span class="ruby-identifier">new</span>(<span class="ruby-ivar">@name</span>, <span class="ruby-ivar">@outcomes</span>, <span class="ruby-ivar">@extra_info</span>)
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- <span class="ruby-identifier">tmp</span>.<span class="ruby-identifier">set_value</span>(<span class="ruby-ivar">@value</span>)
17
- <span class="ruby-identifier">tmp</span>.<span class="ruby-identifier">set_probability_table</span>(<span class="ruby-ivar">@givens</span>, <span class="ruby-ivar">@table</span>)
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- <span class="ruby-identifier">tmp</span>
19
- <span class="ruby-keyword kw">end</span></pre>
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- <pre><span class="ruby-comment cmt"># File pkg/bn4r-0.1.0/lib/bn4r/bn.rb, line 122</span>
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- <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">set_value</span>(<span class="ruby-identifier">value</span>)
15
- <span class="ruby-ivar">@value</span> = <span class="ruby-identifier">value</span>
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- <span class="ruby-keyword kw">end</span></pre>
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- <pre><span class="ruby-comment cmt"># File pkg/bn4r-0.1.0/lib/bn4r/bn.rb, line 126</span>
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- <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">clear_value</span>
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- <span class="ruby-ivar">@value</span> = <span class="ruby-keyword kw">nil</span>
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- <span class="ruby-keyword kw">end</span></pre>
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- <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">parents</span>
15
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16
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- <pre><span class="ruby-comment cmt"># File pkg/bn4r-0.1.0/lib/bn4r/bn.rb, line 141</span>
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- <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">num_parents</span>
15
- <span class="ruby-identifier">parents</span>.<span class="ruby-identifier">size</span>
16
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- <pre><span class="ruby-comment cmt"># File pkg/bn4r-0.1.0/lib/bn4r/bn.rb, line 146</span>
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- <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">root?</span>
15
- <span class="ruby-keyword kw">return</span> <span class="ruby-keyword kw">true</span> <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">num_parents</span> <span class="ruby-operator">==</span> <span class="ruby-value">0</span>
16
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17
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- <pre><span class="ruby-comment cmt"># File pkg/bn4r-0.1.0/lib/bn4r/bn.rb, line 152</span>
14
- <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">all_parents_with_values?</span>
15
- <span class="ruby-identifier">parents</span>.<span class="ruby-identifier">select</span> {<span class="ruby-operator">|</span><span class="ruby-identifier">v</span><span class="ruby-operator">|</span> <span class="ruby-operator">!</span><span class="ruby-identifier">v</span>.<span class="ruby-identifier">value</span>.<span class="ruby-identifier">nil?</span> }.<span class="ruby-identifier">size</span> <span class="ruby-operator">==</span> <span class="ruby-identifier">parents</span>.<span class="ruby-identifier">size</span>
16
- <span class="ruby-keyword kw">end</span></pre>
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- <pre><span class="ruby-comment cmt"># File pkg/bn4r-0.1.0/lib/bn4r/bn.rb, line 156</span>
14
- <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">to_s</span>
15
- <span class="ruby-keyword kw">return</span> <span class="ruby-identifier">name</span> <span class="ruby-operator">+</span> (<span class="ruby-identifier">value</span>.<span class="ruby-identifier">nil?</span> <span class="ruby-value">? </span><span class="ruby-value str">&quot;&quot;</span> <span class="ruby-operator">:</span> (<span class="ruby-value str">&quot; = &quot;</span> <span class="ruby-operator">+</span> <span class="ruby-identifier">value</span>.<span class="ruby-identifier">to_s</span>))
16
- <span class="ruby-keyword kw">end</span></pre>
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- <body class="standalone-code">
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- <pre><span class="ruby-comment cmt"># File pkg/bn4r-0.1.0/lib/bn4r/bn.rb, line 164</span>
14
- <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">set_probability_table</span> (<span class="ruby-identifier">givens</span>, <span class="ruby-identifier">table</span>)
15
- <span class="ruby-comment cmt"># perhaps we should do some error checking on the table entries here?</span>
16
- <span class="ruby-ivar">@table_is_a_proc</span> = (<span class="ruby-identifier">table</span>.<span class="ruby-identifier">class</span> <span class="ruby-operator">!=</span> <span class="ruby-constant">Array</span>)
17
- <span class="ruby-ivar">@givens</span> = <span class="ruby-identifier">givens</span> <span class="ruby-keyword kw">if</span> <span class="ruby-operator">!</span><span class="ruby-identifier">givens</span>.<span class="ruby-identifier">nil?</span>
18
-
19
- <span class="ruby-identifier">raise</span> <span class="ruby-value str">&quot;Error table incorrect number of positions (&quot;</span> \
20
- <span class="ruby-operator">+</span> <span class="ruby-identifier">table</span>.<span class="ruby-identifier">size</span>.<span class="ruby-identifier">to_s</span> <span class="ruby-operator">+</span> <span class="ruby-value str">&quot; of &quot;</span> <span class="ruby-operator">+</span> <span class="ruby-keyword kw">self</span>.<span class="ruby-identifier">get_table_size</span>.<span class="ruby-identifier">to_s</span> \
21
- <span class="ruby-operator">+</span> <span class="ruby-value str">&quot;)&quot;</span> <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">table</span>.<span class="ruby-identifier">size</span> <span class="ruby-operator">!=</span> <span class="ruby-keyword kw">self</span>.<span class="ruby-identifier">get_table_size</span>
22
-
23
- <span class="ruby-ivar">@table</span> = <span class="ruby-identifier">table</span>
24
- <span class="ruby-keyword kw">end</span></pre>
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- <pre><span class="ruby-comment cmt"># File pkg/bn4r-0.1.0/lib/bn4r/bn.rb, line 176</span>
14
- <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">parents_assignments</span>
15
- <span class="ruby-identifier">parents</span>.<span class="ruby-identifier">collect</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">p</span><span class="ruby-operator">|</span> <span class="ruby-identifier">p</span>.<span class="ruby-identifier">value</span> }
16
- <span class="ruby-keyword kw">end</span></pre>
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- <pre><span class="ruby-comment cmt"># File pkg/bn4r-0.1.0/lib/bn4r/bn.rb, line 182</span>
14
- <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">get_table_size</span>
15
- <span class="ruby-identifier">num</span> = <span class="ruby-ivar">@outcomes</span>.<span class="ruby-identifier">size</span>
16
- <span class="ruby-ivar">@givens</span>.<span class="ruby-identifier">each</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">given</span><span class="ruby-operator">|</span> <span class="ruby-identifier">num</span> = <span class="ruby-identifier">num</span> <span class="ruby-operator">*</span> <span class="ruby-identifier">given</span>.<span class="ruby-identifier">outcomes</span>.<span class="ruby-identifier">size</span> }
17
- <span class="ruby-keyword kw">return</span> <span class="ruby-identifier">num</span>
18
- <span class="ruby-keyword kw">end</span></pre>
19
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- <pre><span class="ruby-comment cmt"># File pkg/bn4r-0.1.0/lib/bn4r/bn.rb, line 190</span>
14
- <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">set_probability</span>(<span class="ruby-identifier">number</span>, <span class="ruby-identifier">node_assignment</span>, <span class="ruby-identifier">givens_assignments</span>)
15
- <span class="ruby-ivar">@table</span>[<span class="ruby-identifier">get_table_index</span>(<span class="ruby-identifier">node_assignment</span>, <span class="ruby-identifier">givens_assignments</span>)] = <span class="ruby-identifier">number</span>
16
- <span class="ruby-keyword kw">end</span></pre>
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- <title>get_probability (BayesNetNode)</title>
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- <pre><span class="ruby-comment cmt"># File pkg/bn4r-0.1.0/lib/bn4r/bn.rb, line 198</span>
14
- <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">get_probability</span>(<span class="ruby-identifier">node_assignment</span> = <span class="ruby-identifier">value</span>, <span class="ruby-identifier">givens_assignments</span> = <span class="ruby-identifier">parents_assignments</span>)
15
- <span class="ruby-comment cmt"># raise &quot;Node must have a value and a givens_assignments, otherwise put&quot; # + &quot;them in function call&quot; if node_assignment.nil? or givens_assignments.nil?</span>
16
- <span class="ruby-comment cmt"># if there's a cached table take the index</span>
17
- <span class="ruby-keyword kw">return</span> <span class="ruby-ivar">@table</span>[<span class="ruby-identifier">get_table_index</span>(<span class="ruby-identifier">node_assignment</span>, <span class="ruby-identifier">givens_assignments</span>)] <span class="ruby-keyword kw">if</span> <span class="ruby-ivar">@table_is_a_proc</span>.<span class="ruby-identifier">nil?</span> <span class="ruby-keyword kw">or</span> <span class="ruby-operator">!</span><span class="ruby-ivar">@table_is_a_proc</span>
18
- <span class="ruby-comment cmt"># if the value is calculated on the fly using a function instead of</span>
19
- <span class="ruby-comment cmt"># a table</span>
20
- <span class="ruby-keyword kw">return</span> <span class="ruby-ivar">@table</span>[<span class="ruby-identifier">node_assignment</span>, <span class="ruby-identifier">givens_assignments</span>]
21
- <span class="ruby-keyword kw">end</span></pre>
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- <title>get_table_index (BayesNetNode)</title>
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- <body class="standalone-code">
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- <pre><span class="ruby-comment cmt"># File pkg/bn4r-0.1.0/lib/bn4r/bn.rb, line 210</span>
14
- <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">get_table_index</span>(<span class="ruby-identifier">node_assignment</span>, <span class="ruby-identifier">givens_assignments</span>)
15
- <span class="ruby-identifier">x</span> = []
16
- <span class="ruby-identifier">indices</span> = []
17
- <span class="ruby-identifier">index</span> = <span class="ruby-value">0</span>
18
-
19
- <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">givens_assignments</span>.<span class="ruby-identifier">length</span> <span class="ruby-operator">!=</span> <span class="ruby-ivar">@givens</span>.<span class="ruby-identifier">length</span>
20
- <span class="ruby-identifier">raise</span> <span class="ruby-value str">&quot;Error. Number of assignments does not match node.&quot;</span>
21
- <span class="ruby-keyword kw">end</span>
22
-
23
- <span class="ruby-keyword kw">if</span> <span class="ruby-ivar">@givens</span>.<span class="ruby-identifier">length</span> <span class="ruby-operator">&gt;</span> <span class="ruby-value">0</span>
24
- <span class="ruby-comment cmt"># create a indices array with the position of each value of</span>
25
- <span class="ruby-comment cmt"># given assignments.</span>
26
- <span class="ruby-identifier">givens_assignments</span>.<span class="ruby-identifier">length</span>.<span class="ruby-identifier">times</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">i</span><span class="ruby-operator">|</span>
27
- <span class="ruby-identifier">assignment</span> = <span class="ruby-identifier">givens_assignments</span>[<span class="ruby-identifier">i</span>]
28
- <span class="ruby-identifier">indices</span>[<span class="ruby-identifier">i</span>] = <span class="ruby-ivar">@givens</span>[<span class="ruby-identifier">i</span>].<span class="ruby-identifier">outcomes</span>.<span class="ruby-identifier">index</span>(<span class="ruby-identifier">assignment</span>)
29
- }
30
-
31
- <span class="ruby-comment cmt"># create a array with the number of possible values each</span>
32
- <span class="ruby-comment cmt"># given node and this node itself can have ( node.outcomes.length )</span>
33
- <span class="ruby-comment cmt"># plus all next nodes.</span>
34
- <span class="ruby-identifier">x</span>[<span class="ruby-identifier">givens_assignments</span>.<span class="ruby-identifier">length</span><span class="ruby-operator">-</span><span class="ruby-value">1</span>] = <span class="ruby-ivar">@outcomes</span>.<span class="ruby-identifier">length</span>
35
- (<span class="ruby-identifier">givens_assignments</span>.<span class="ruby-identifier">length</span><span class="ruby-operator">-</span><span class="ruby-value">2</span>).<span class="ruby-identifier">downto</span>(<span class="ruby-value">0</span>) { <span class="ruby-operator">|</span><span class="ruby-identifier">j</span><span class="ruby-operator">|</span>
36
- <span class="ruby-identifier">x</span>[<span class="ruby-identifier">j</span>] = <span class="ruby-identifier">x</span>[<span class="ruby-identifier">j</span><span class="ruby-operator">+</span><span class="ruby-value">1</span>] <span class="ruby-operator">*</span> <span class="ruby-ivar">@givens</span>[<span class="ruby-identifier">j</span><span class="ruby-operator">+</span><span class="ruby-value">1</span>].<span class="ruby-identifier">outcomes</span>.<span class="ruby-identifier">length</span>
37
- }
38
-
39
- <span class="ruby-comment cmt"># to get the index, sum for each assignment the</span>
40
- <span class="ruby-comment cmt"># product of each given assignment outcomes size</span>
41
- <span class="ruby-comment cmt"># by its value index.</span>
42
- <span class="ruby-identifier">givens_assignments</span>.<span class="ruby-identifier">length</span>.<span class="ruby-identifier">times</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">i</span><span class="ruby-operator">|</span>
43
- <span class="ruby-identifier">index</span> <span class="ruby-operator">+=</span> <span class="ruby-identifier">x</span>[<span class="ruby-identifier">i</span>] <span class="ruby-operator">*</span> <span class="ruby-identifier">indices</span>[<span class="ruby-identifier">i</span>]
44
- }
45
- <span class="ruby-keyword kw">end</span>
46
-
47
- <span class="ruby-identifier">index</span> <span class="ruby-operator">+=</span> <span class="ruby-ivar">@outcomes</span>.<span class="ruby-identifier">index</span>(<span class="ruby-identifier">node_assignment</span>)
48
-
49
- <span class="ruby-keyword kw">return</span> <span class="ruby-identifier">index</span>
50
- <span class="ruby-keyword kw">end</span></pre>
51
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52
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