bn4r 0.1.2 → 0.9.0

data/lib/bn4r/bn.rb

@@ -13,6 +13,7 @@
 ##############################################################
 require 'rgl/adjacency'
 require 'rgl/dot'
+require 'rgl/traversal'
 
 include RGL
 
@@ -34,9 +35,37 @@ class BayesNet < DirectedAdjacencyGraph
     edge
   end
 
+  # Removes a vertex and its edges of the BayesNet, removing
+  # also its references from childs nodes.
+  def remove_vertex(v)
+    self.each_child(v) {|c| c.parents.delete(v)}
+    super(v)
+  end
+
+# Adds a vertex to the BayesNet
+#  def add_vertex(node)
+#    raise "BayesNet nodes must be of BayesNetNode class" if node.class != BayesNetNode
+#    raise "Already exists a node with name #{node.name}" unless get_variable(node.name).nil?
+#    super(node)
+#  end
+
 # BN Methods
 # ----------
 
+  # Returns an array with childs of given node ( or vertice )
+  def childs(v)
+    begin
+      self.adjacent_vertices(v)
+    rescue RGL::NoVertexError
+      []
+    end
+  end
+
+  # Iterates all the childs of given node ( or vertice )
+  def each_child(v)
+    childs(v).each { |child| yield child }
+  end
+
   # Clears the value of all BayesNetNodes in Bayes Net.
   def clear_values!
       vertices.each { |v| v.clear_value }
@@ -45,6 +74,7 @@ class BayesNet < DirectedAdjacencyGraph
   # Gets the variable with given name.
   def get_variable( text )
     vertices.each { |v| return v if v.name == text }
+    return nil
   end
 
   # Returns the root nodes of the Bayes Net.
@@ -52,6 +82,24 @@ class BayesNet < DirectedAdjacencyGraph
     vertices.select { |v| root?(v) }
   end
 
+  # Returns the leaf nodes
+  def leafs
+    vertices.select { |v| childs(v).size == 0 }
+  end
+
+  # Iterates all the leaf nodes ( or vertices )
+  def each_leaf
+    leafs.each { |leaf| yield leaf }
+  end
+  
+  def siblings(v)
+    return roots if v.root?
+    v.parents.map do |p|
+      childs(p)
+    end.flatten.uniq
+  end
+
+
   # Returns true/false if given Node is root.
   def root?(v)
     return true if num_parents(v) == 0
@@ -63,6 +111,11 @@ class BayesNet < DirectedAdjacencyGraph
     return v.parents.size
   end
 
+  # Returns de deep of the bayes net (larger path from a root node 
+  # to a child node).
+  def deep
+    vertices.collect {|root| root.deep }.max
+  end
   # Return the probability of a distribution in the bayes net
   # all nodes in the Bayes Net must have a value, otherwise
   # will raise a exception  
@@ -95,7 +148,17 @@ class BayesNet < DirectedAdjacencyGraph
      return bn_ordered.flatten
   end
 
- 
+  # Returns nodes ordered by Breath First Search
+  def nodes_ordered_by_breath_first_search(nodes = roots, bn_ordered = Array.new)
+
+    nodes.each { |v| 
+      next if bn_ordered.include?(v)
+      bn_ordered << v
+      nodes_ordered_by_breath_first_search(childs(v), bn_ordered)
+    }
+    return bn_ordered.flatten
+  end
+  
 end
 
 class BayesNetNode
@@ -114,6 +177,11 @@ class BayesNetNode
     @relations = []
   end
 
+  # Renames a node
+  def rename(new_name)
+    @name = new_name  
+  end
+
   # Returns a copy of the node itself
   def copy
     tmp = BayesNetNode.new(@name, @outcomes, @extra_info)
@@ -145,10 +213,13 @@ class BayesNetNode
     parents.size
   end
   
-  # Function not implemented yet
-  def deep(visited_nodes=[])
-    #TODO: Make deep function
-    raise "Function not implemented yet"
+  # Returns de deep of the node ( larger path to root nodes )
+  def deep(node=self)
+    res = 1
+    res += node.parents.collect { |parent|
+      parent.deep  
+    }.max unless node.root?
+    return res
   end
   
   # Returns true if the node is a root node ( doesn't have parents ).

data/lib/bn4r/bn_algorithms.rb

@@ -45,8 +45,13 @@ class BayesNet < DirectedAdjacencyGraph
   # The input are the nodes of the bn ordered by dependencies see nodes_ordered_by_dependencies
   def prior_sample(nodes_ordered = nodes_ordered_by_dependencies)
     sample = Array.new
-    nodes_ordered.each { |v| 
-      value = rand < v.get_probability(true)
+    nodes_ordered.each { |v|
+      value = nil
+      prob = 0.0; r_prob = rand
+      v.outcomes.each { |outcome| 
+        prob += v.get_probability(outcome)
+        value = outcome and break if r_prob < prob
+      }
       v.set_value(value) 
       sample << v.copy
     }
@@ -181,7 +186,12 @@ class BayesNet < DirectedAdjacencyGraph
         value = node_actual[0].value
         w = w * v.get_probability(value)
       else
-        value = rand < v.get_probability(true)
+        rand_sample = rand; i_tmp = 0.0
+        v.outcomes.each { |outcome|
+          value = outcome
+          i_tmp += v.get_probability(value)
+          break if i_tmp > rand_sample          
+        }
       end
       v.set_value(value) 
       sample << v.copy

data/lib/bn4r/bn_export.rb

@@ -19,7 +19,7 @@ class BayesNet < DirectedAdjacencyGraph
 
 def to_dot(bn = self)
   #TODO: label relations between nodes
-  #TODO: �print information about probabilities tables?
+  #TODO: print information about probabilities tables?
   bn.to_dot_graph.to_s
 end
 
@@ -53,19 +53,29 @@ def xbn_variables(bn = self)
   # <STATENAME>Yes</STATENAME>
   # <STATENAME>No</STATENAME>
   #</VAR>
-  x_pos_index = 0; y_pos_index = 0 #; actual_deep = 0
-  bn.nodes_ordered_by_dependencies.each { |node|
-    if !node.root? and (y_pos_index == 0)
-      x_pos_index = 0; y_pos_index = 1
-    end    
-    x_pos = 1000 + (6500*x_pos_index)
-    y_pos = 2500 + (5000*y_pos_index)
-    x_pos_index += 1
+  x_pos_index = Array.new(bn.deep, 0); x0_pos = Array.new(bn.deep, 0)
+  num_nodes_in_deep = Array.new(bn.deep, 0)
+  
+  # get how many nodes are in each deep level to calcule the offset
+  bn.vertices.each { |node| num_nodes_in_deep[node.deep-1] += 1 }
+  x0_pos = num_nodes_in_deep.collect { |num_nodes| 
+    a = num_nodes * 6500
+    b = num_nodes_in_deep.max * 6500
+    (b-a)/2
+  }
+  
+  bn.nodes_ordered_by_breath_first_search.each { |node|    
+    x_pos = x0_pos[node.deep-1] + (6500*x_pos_index[node.deep-1])
+    y_pos = 2500 + (5000*(node.deep-1))
+    x_pos_index[node.deep-1] += 1;
     xbn_str += "<VAR NAME=\"#{node.name}\" TYPE=\"discrete\" XPOS=\"#{x_pos}\" YPOS=\"#{y_pos}\">\n" 
     xbn_str += "<FULLNAME>#{node.name}</FULLNAME>\n"
-    # TODO: Make statename match with node.outcomes
-    xbn_str += "<STATENAME>Yes</STATENAME>\n"
-    xbn_str += "<STATENAME>No</STATENAME>\n"
+    if (node.outcomes - [true,false]).empty?
+      xbn_str += "<STATENAME>Yes</STATENAME>\n"
+      xbn_str += "<STATENAME>No</STATENAME>\n"
+    else
+      node.outcomes.each {|o| xbn_str += "<STATENAME>#{o}</STATENAME>\n"}
+    end
     xbn_str += "</VAR>\n"
   }
   xbn_str += "</VARIABLES>\n" 
@@ -119,10 +129,14 @@ bn.nodes_ordered_by_dependencies.each { |node|
   xbn_str += "  </CONDSET>\n"
 
   xbn_str += "  <DPIS>\n"
-  boolean_combinations = generate_boolean_combinations(node.num_parents)
+
+  boolean_combinations = generate_combinations(node.parents)
   boolean_combinations.each { |boolean_combination|
-    # TODO: Make probs based on outcomes
-    probs = [true, false].collect { |n_assignment| node.get_probability(n_assignment, boolean_combination) }
+    
+    probs = node.outcomes.collect { |n_assignment| 
+    p "n_assignment: " + n_assignment.to_s
+    node.get_probability(n_assignment, boolean_combination) }
+    
     bc_str = boolean_combination.collect {|b| (b)?"0":"1"}.join(" ")
     xbn_str += "  <DPI INDEXES=\"#{bc_str} \">" + probs.join(" ") + " </DPI>\n"
     #<DPI INDEXES=\"0 0 0 \">0.7 0.3 </DPI>

data/lib/bn4r/bn_table_probabilities.rb

@@ -77,3 +77,13 @@ def generate_boolean_combinations(num)
   boolean_combinations
 end
 
+def generate_combinations(nodes)
+  # Selecting nodes whith outcomes diferents from true, false.
+  nodes_notbinaries = nodes.select {|node| !(node.outcomes - [true,false]).empty? }
+
+  #TODO: Implement combinations for nodes with outcomes different from [true,false]
+  raise "Function still not implemented ( parents with outcomes different from [true,false] )" \
+     if !nodes_notbinaries.empty?
+  generate_boolean_combinations(nodes.size)
+end
+

data/lib/bn4r/version.rb

@@ -1,8 +1,8 @@
 module Bn4r #:nodoc:
   module VERSION #:nodoc:
     MAJOR = 0
-    MINOR = 1
-    TINY  = 2
+    MINOR = 9
+    TINY  = 0
 
     STRING = [MAJOR, MINOR, TINY].join('.')
   end

data/test/bn4r_test.rb

@@ -9,6 +9,62 @@ class Bn4rTest < Test::Unit::TestCase
  
 # TESTS
  
+  def test_siblings
+    bn_aima = bayes_net_aima
+    b = bn_aima.get_variable("Burglary")
+    a = bn_aima.get_variable("Alarm")
+    j = bn_aima.get_variable("JohnCalls")
+    m = bn_aima.get_variable("MaryCalls")
+
+    b_siblings = bn_aima.siblings(b)
+    a_siblings = bn_aima.siblings(a)
+    j_siblings = bn_aima.siblings(j)
+    m_siblings = bn_aima.siblings(j)
+
+
+    
+    assert j_siblings.include?(j)
+    assert j_siblings.include?(m)
+    assert m_siblings.include?(j)
+    assert m_siblings.include?(m)
+    
+    assert_equal j_siblings.size, 2
+    assert_equal m_siblings.size, 2
+    assert_equal a_siblings.size, 1
+    assert_equal b_siblings.size, 2
+    
+  end
+ 
+  def test_childs
+    bn_aima = bayes_net_aima
+    b = bn_aima.get_variable("Burglary")
+    a = bn_aima.get_variable("Alarm")
+    j = bn_aima.get_variable("JohnCalls")
+    m = bn_aima.get_variable("MaryCalls")
+    
+    a_childs = bn_aima.childs(a)
+    
+    assert_equal a_childs.size, 2
+    assert a_childs.include?(j)
+    assert a_childs.include?(m)
+    
+    assert_equal bn_aima.childs(j).size, 0
+
+  end
+ 
+  def test_leafs
+  
+    bn_aima = bayes_net_aima
+    j = bn_aima.get_variable("JohnCalls")
+    m = bn_aima.get_variable("MaryCalls")
+
+    leafs = bn_aima.leafs
+    assert_equal leafs.size, 2
+    assert leafs.include?(j)
+    assert leafs.include?(m)
+    
+  end
+ 
   def test_create_sample_bn
     bn = bayes_net_aaile
   
@@ -16,6 +72,54 @@ class Bn4rTest < Test::Unit::TestCase
     assert_equal bn.edges.size, 4
   end
   
+  def test_deep
+    bn_aima = bayes_net_aima
+    b = bn_aima.get_variable("Burglary")
+    a = bn_aima.get_variable("Alarm")
+    j = bn_aima.get_variable("JohnCalls")
+    m = bn_aima.get_variable("MaryCalls")
+
+    assert_equal 1, b.deep
+    assert_equal 2, a.deep
+    assert_equal 3, j.deep
+    assert_equal 3, m.deep
+    
+    assert_equal 3, bn_aima.deep
+    
+    bn = bayes_net_aima2
+    rain = bn.get_variable("Rain").copy
+    sprinkler = bn.get_variable("Sprinkler").copy
+    wetgrass = bn.get_variable("WetGrass").copy
+    cloudy = bn.get_variable("Cloudy").copy
+    
+    assert_equal 1, cloudy.deep
+    assert_equal 2, rain.deep
+    assert_equal 2, sprinkler.deep
+    assert_equal 3, wetgrass.deep
+    assert_equal 3, bn.deep
+    
+    
+  end
+  
+  def test_nodes_ordered_by_breath_first_search
+
+    bn_aima = bayes_net_aima
+    b = bn_aima.get_variable("Burglary")
+    e = bn_aima.get_variable("Earthquake")
+    a = bn_aima.get_variable("Alarm")
+    j = bn_aima.get_variable("JohnCalls")
+    m = bn_aima.get_variable("MaryCalls")
+
+    bn_ordered = bn_aima.nodes_ordered_by_breath_first_search([b,e])
+    
+    assert_equal bn_ordered.size, 5
+    assert_equal bn_ordered[0].name, b.name
+    assert_equal bn_ordered[1].name, a.name
+    assert [bn_ordered[2].name, bn_ordered[3].name].include?(j.name)
+    assert [bn_ordered[2].name, bn_ordered[3].name].include?(m.name)
+    assert_equal bn_ordered[4].name, e.name
+
+  end
   
   def test_graph_viz
     bn = bayes_net_aaile

data/test/test_helper.rb

@@ -1,2 +1,3 @@
+require 'rubygems'
 require 'test/unit'
 require File.dirname(__FILE__) + '/../lib/bn4r'

metadata

@@ -1,10 +1,10 @@
 --- !ruby/object:Gem::Specification 
-rubygems_version: 0.8.11
+rubygems_version: 0.9.0
 specification_version: 1
 name: bn4r
 version: !ruby/object:Gem::Version 
-  version: 0.1.2
-date: 2006-11-10 00:00:00 +01:00
+  version: 0.9.0
+date: 2007-01-22 00:00:00 +01:00
 summary: bn4r is a bayesian networks library on ruby that provides the user with classes for create bayesian networks and diverse algorithms for solve them.
 require_paths: 
 - lib
@@ -25,6 +25,7 @@ required_ruby_version: !ruby/object:Gem::Version::Requirement
 platform: ruby
 signing_key: 
 cert_chain: 
+post_install_message: 
 authors: 
 - Sergio Espeja
 files: 
@@ -39,44 +40,20 @@ files:
 - doc/fr_class_index.html
 - doc/fr_method_index.html
 - doc/index.html
-- doc/files/README.html
+- doc/files/README_es.html
 - doc/files/lib
-- doc/files/test
-- doc/files/setup_rb.src
-- doc/files/setup_rb.html
-- doc/files/pkg
+- doc/files/README.html
 - doc/files/lib/bn4r
 - doc/files/lib/bn4r_rb.html
-- doc/files/lib/bn4r/version_rb.html
+- doc/files/lib/bn4r/bn_table_probabilities_rb.src
+- doc/files/lib/bn4r/bn_export_rb.html
 - doc/files/lib/bn4r/bn_rb.html
 - doc/files/lib/bn4r/bn_table_probabilities_rb.html
 - doc/files/lib/bn4r/bn_algorithms_rb.html
-- doc/files/lib/bn4r/bn_table_probabilities_rb.src
-- doc/files/lib/bn4r/bn_export_rb.html
+- doc/files/lib/bn4r/version_rb.html
 - doc/files/lib/bn4r/bn_import_rb.html
 - doc/files/lib/bn4r/bn_table_probabilities_rb.src/M000001.html
-- doc/files/test/print_bn_output_rb.src
-- doc/files/test/bn_test_models_rb.src
-- doc/files/test/test_helper_rb.html
-- doc/files/test/bn4r_test_rb.html
-- doc/files/test/print_bn_output_rb.html
-- doc/files/test/bn_test_models_rb.html
-- doc/files/test/print_bn_output_rb.src/M000002.html
-- doc/files/test/bn_test_models_rb.src/M000003.html
-- doc/files/test/bn_test_models_rb.src/M000004.html
-- doc/files/test/bn_test_models_rb.src/M000005.html
-- doc/files/setup_rb.src/M000006.html
-- doc/files/pkg/bn4r-0_1_0
-- doc/files/pkg/bn4r-0_1_0/test
-- doc/files/pkg/bn4r-0_1_0/lib
-- doc/files/pkg/bn4r-0_1_0/test/test_helper_rb.html
-- doc/files/pkg/bn4r-0_1_0/test/bn4r_test_rb.html
-- doc/files/pkg/bn4r-0_1_0/lib/bn4r
-- doc/files/pkg/bn4r-0_1_0/lib/bn4r_rb.html
-- doc/files/pkg/bn4r-0_1_0/lib/bn4r/version_rb.html
-- doc/files/pkg/bn4r-0_1_0/lib/bn4r/bn_rb.html
-- doc/files/pkg/bn4r-0_1_0/lib/bn4r/bn_table_probabilities_rb.html
-- doc/files/pkg/bn4r-0_1_0/lib/bn4r/bn_algorithms_rb.html
+- doc/files/lib/bn4r/bn_table_probabilities_rb.src/M000002.html
 - doc/classes/BayesNet.src
 - doc/classes/BNTPGFromPositiveNegativeRelations.src
 - doc/classes/BayesNetNode.src
@@ -85,30 +62,6 @@ files:
 - doc/classes/BNTPGFromPositiveNegativeRelations.html
 - doc/classes/BayesNetNode.html
 - doc/classes/BnTableProbabilitiesGenerator.html
-- doc/classes/ConfigTable.src
-- doc/classes/ConfigTable
-- doc/classes/ToplevelInstaller.src
-- doc/classes/ToplevelInstallerMulti.src
-- doc/classes/Bn4rTest.src
-- doc/classes/Installer.src
-- doc/classes/Installer
-- doc/classes/File.src
-- doc/classes/HookScriptAPI.src
-- doc/classes/FileOperations.src
-- doc/classes/ConfigTable.html
-- doc/classes/ToplevelInstaller.html
-- doc/classes/SetupError.html
-- doc/classes/ToplevelInstallerMulti.html
-- doc/classes/Bn4rTest.html
-- doc/classes/Installer.html
-- doc/classes/File.html
-- doc/classes/HookScriptAPI.html
-- doc/classes/Errno.html
-- doc/classes/Errno
-- doc/classes/FileOperations.html
-- doc/classes/Enumerable.html
-- doc/classes/BayesNet.src/M000001.html
-- doc/classes/BayesNet.src/M000002.html
 - doc/classes/BayesNet.src/M000003.html
 - doc/classes/BayesNet.src/M000004.html
 - doc/classes/BayesNet.src/M000005.html
@@ -137,66 +90,8 @@ files:
 - doc/classes/BayesNet.src/M000028.html
 - doc/classes/BayesNet.src/M000029.html
 - doc/classes/BayesNet.src/M000030.html
-- doc/classes/BayesNet.src/M000091.html
-- doc/classes/BayesNet.src/M000092.html
-- doc/classes/BayesNet.src/M000093.html
-- doc/classes/BayesNet.src/M000094.html
-- doc/classes/BayesNet.src/M000095.html
-- doc/classes/BayesNet.src/M000096.html
-- doc/classes/BayesNet.src/M000097.html
-- doc/classes/BayesNet.src/M000098.html
-- doc/classes/BayesNet.src/M000099.html
-- doc/classes/BayesNet.src/M000100.html
-- doc/classes/BayesNet.src/M000101.html
-- doc/classes/BayesNet.src/M000102.html
-- doc/classes/BayesNet.src/M000103.html
-- doc/classes/BayesNet.src/M000104.html
-- doc/classes/BayesNet.src/M000105.html
-- doc/classes/BayesNet.src/M000106.html
-- doc/classes/BayesNet.src/M000107.html
-- doc/classes/BayesNet.src/M000108.html
-- doc/classes/BayesNet.src/M000109.html
-- doc/classes/BayesNet.src/M000110.html
-- doc/classes/BayesNet.src/M000111.html
-- doc/classes/BayesNet.src/M000112.html
-- doc/classes/BayesNet.src/M000113.html
-- doc/classes/BayesNet.src/M000114.html
-- doc/classes/BayesNet.src/M000115.html
-- doc/classes/BayesNet.src/M000116.html
-- doc/classes/BayesNet.src/M000117.html
-- doc/classes/BayesNet.src/M000118.html
-- doc/classes/BayesNet.src/M000119.html
-- doc/classes/BayesNet.src/M000120.html
-- doc/classes/BayesNet.src/M000121.html
-- doc/classes/BayesNet.src/M000122.html
-- doc/classes/BayesNet.src/M000123.html
-- doc/classes/BayesNet.src/M000124.html
-- doc/classes/BayesNet.src/M000125.html
-- doc/classes/BayesNet.src/M000126.html
-- doc/classes/BNTPGFromPositiveNegativeRelations.src/M000018.html
-- doc/classes/BNTPGFromPositiveNegativeRelations.src/M000019.html
-- doc/classes/BNTPGFromPositiveNegativeRelations.src/M000021.html
-- doc/classes/BNTPGFromPositiveNegativeRelations.src/M000022.html
 - doc/classes/BNTPGFromPositiveNegativeRelations.src/M000031.html
 - doc/classes/BNTPGFromPositiveNegativeRelations.src/M000032.html
-- doc/classes/BNTPGFromPositiveNegativeRelations.src/M000143.html
-- doc/classes/BNTPGFromPositiveNegativeRelations.src/M000144.html
-- doc/classes/BNTPGFromPositiveNegativeRelations.src/M000145.html
-- doc/classes/BNTPGFromPositiveNegativeRelations.src/M000146.html
-- doc/classes/BNTPGFromPositiveNegativeRelations.src/M000023.html
-- doc/classes/BayesNetNode.src/M000020.html
-- doc/classes/BayesNetNode.src/M000021.html
-- doc/classes/BayesNetNode.src/M000022.html
-- doc/classes/BayesNetNode.src/M000023.html
-- doc/classes/BayesNetNode.src/M000024.html
-- doc/classes/BayesNetNode.src/M000025.html
-- doc/classes/BayesNetNode.src/M000026.html
-- doc/classes/BayesNetNode.src/M000027.html
-- doc/classes/BayesNetNode.src/M000028.html
-- doc/classes/BayesNetNode.src/M000029.html
-- doc/classes/BayesNetNode.src/M000030.html
-- doc/classes/BayesNetNode.src/M000031.html
-- doc/classes/BayesNetNode.src/M000032.html
 - doc/classes/BayesNetNode.src/M000033.html
 - doc/classes/BayesNetNode.src/M000034.html
 - doc/classes/BayesNetNode.src/M000035.html
@@ -215,292 +110,19 @@ files:
 - doc/classes/BayesNetNode.src/M000048.html
 - doc/classes/BayesNetNode.src/M000049.html
 - doc/classes/BayesNetNode.src/M000050.html
-- doc/classes/BayesNetNode.src/M000051.html
-- doc/classes/BayesNetNode.src/M000052.html
-- doc/classes/BayesNetNode.src/M000053.html
-- doc/classes/BayesNetNode.src/M000054.html
-- doc/classes/BayesNetNode.src/M000055.html
-- doc/classes/BayesNetNode.src/M000056.html
-- doc/classes/BayesNetNode.src/M000057.html
-- doc/classes/BayesNetNode.src/M000058.html
-- doc/classes/BayesNetNode.src/M000059.html
-- doc/classes/BayesNetNode.src/M000060.html
-- doc/classes/BayesNetNode.src/M000061.html
-- doc/classes/BayesNetNode.src/M000062.html
-- doc/classes/BayesNetNode.src/M000063.html
-- doc/classes/BayesNetNode.src/M000064.html
-- doc/classes/BayesNetNode.src/M000065.html
-- doc/classes/BayesNetNode.src/M000066.html
-- doc/classes/BayesNetNode.src/M000147.html
-- doc/classes/BayesNetNode.src/M000148.html
-- doc/classes/BayesNetNode.src/M000149.html
-- doc/classes/BayesNetNode.src/M000150.html
-- doc/classes/BayesNetNode.src/M000151.html
-- doc/classes/BayesNetNode.src/M000152.html
-- doc/classes/BayesNetNode.src/M000153.html
-- doc/classes/BayesNetNode.src/M000154.html
-- doc/classes/BayesNetNode.src/M000155.html
-- doc/classes/BayesNetNode.src/M000156.html
-- doc/classes/BayesNetNode.src/M000157.html
-- doc/classes/BayesNetNode.src/M000158.html
-- doc/classes/BayesNetNode.src/M000159.html
-- doc/classes/BayesNetNode.src/M000160.html
-- doc/classes/BayesNetNode.src/M000161.html
-- doc/classes/BayesNetNode.src/M000162.html
-- doc/classes/BayesNetNode.src/M000163.html
-- doc/classes/BayesNetNode.src/M000164.html
-- doc/classes/BayesNetNode.src/M000165.html
-- doc/classes/BayesNetNode.src/M000166.html
-- doc/classes/BayesNetNode.src/M000167.html
-- doc/classes/BayesNetNode.src/M000168.html
-- doc/classes/BayesNetNode.src/M000169.html
-- doc/classes/BayesNetNode.src/M000170.html
-- doc/classes/BayesNetNode.src/M000171.html
-- doc/classes/BayesNetNode.src/M000172.html
-- doc/classes/BayesNetNode.src/M000173.html
-- doc/classes/BayesNetNode.src/M000174.html
-- doc/classes/BayesNetNode.src/M000175.html
-- doc/classes/BayesNetNode.src/M000176.html
-- doc/classes/BayesNetNode.src/M000177.html
-- doc/classes/BayesNetNode.src/M000178.html
-- doc/classes/BayesNetNode.src/M000179.html
-- doc/classes/BnTableProbabilitiesGenerator.src/M000036.html
-- doc/classes/BnTableProbabilitiesGenerator.src/M000040.html
-- doc/classes/BnTableProbabilitiesGenerator.src/M000067.html
-- doc/classes/BnTableProbabilitiesGenerator.src/M000207.html
-- doc/classes/BnTableProbabilitiesGenerator.src/M000208.html
-- doc/classes/BnTableProbabilitiesGenerator.src/M000041.html
-- doc/classes/ConfigTable.src/M000007.html
-- doc/classes/ConfigTable.src/M000008.html
-- doc/classes/ConfigTable.src/M000009.html
-- doc/classes/ConfigTable.src/M000010.html
-- doc/classes/ConfigTable.src/M000011.html
-- doc/classes/ConfigTable.src/M000012.html
-- doc/classes/ConfigTable.src/M000013.html
-- doc/classes/ConfigTable.src/M000014.html
-- doc/classes/ConfigTable.src/M000015.html
-- doc/classes/ConfigTable.src/M000016.html
-- doc/classes/ConfigTable.src/M000017.html
-- doc/classes/ConfigTable.src/M000018.html
-- doc/classes/ConfigTable.src/M000019.html
-- doc/classes/ConfigTable.src/M000020.html
-- doc/classes/ConfigTable.src/M000021.html
-- doc/classes/ConfigTable.src/M000022.html
-- doc/classes/ConfigTable.src/M000023.html
-- doc/classes/ConfigTable.src/M000024.html
-- doc/classes/ConfigTable.src/M000025.html
-- doc/classes/ConfigTable.src/M000026.html
-- doc/classes/ConfigTable.src/M000027.html
-- doc/classes/ConfigTable/BoolItem.src
-- doc/classes/ConfigTable/ProgramItem.src
-- doc/classes/ConfigTable/PathItem.src
-- doc/classes/ConfigTable/PackageSelectionItem.src
-- doc/classes/ConfigTable/MetaConfigEnvironment.src
-- doc/classes/ConfigTable/ExecItem.src
-- doc/classes/ConfigTable/SelectItem.src
-- doc/classes/ConfigTable/Item.src
-- doc/classes/ConfigTable/BoolItem.html
-- doc/classes/ConfigTable/ProgramItem.html
-- doc/classes/ConfigTable/PathItem.html
-- doc/classes/ConfigTable/PackageSelectionItem.html
-- doc/classes/ConfigTable/MetaConfigEnvironment.html
-- doc/classes/ConfigTable/ExecItem.html
-- doc/classes/ConfigTable/SelectItem.html
-- doc/classes/ConfigTable/Item.html
-- doc/classes/ConfigTable/BoolItem.src/M000028.html
-- doc/classes/ConfigTable/BoolItem.src/M000029.html
-- doc/classes/ConfigTable/ProgramItem.src/M000030.html
-- doc/classes/ConfigTable/PathItem.src/M000031.html
-- doc/classes/ConfigTable/PackageSelectionItem.src/M000032.html
-- doc/classes/ConfigTable/PackageSelectionItem.src/M000033.html
-- doc/classes/ConfigTable/MetaConfigEnvironment.src/M000034.html
-- doc/classes/ConfigTable/MetaConfigEnvironment.src/M000035.html
-- doc/classes/ConfigTable/MetaConfigEnvironment.src/M000036.html
-- doc/classes/ConfigTable/MetaConfigEnvironment.src/M000037.html
-- doc/classes/ConfigTable/MetaConfigEnvironment.src/M000038.html
-- doc/classes/ConfigTable/MetaConfigEnvironment.src/M000039.html
-- doc/classes/ConfigTable/MetaConfigEnvironment.src/M000040.html
-- doc/classes/ConfigTable/MetaConfigEnvironment.src/M000041.html
-- doc/classes/ConfigTable/MetaConfigEnvironment.src/M000042.html
-- doc/classes/ConfigTable/MetaConfigEnvironment.src/M000043.html
-- doc/classes/ConfigTable/MetaConfigEnvironment.src/M000044.html
-- doc/classes/ConfigTable/MetaConfigEnvironment.src/M000045.html
-- doc/classes/ConfigTable/MetaConfigEnvironment.src/M000046.html
-- doc/classes/ConfigTable/ExecItem.src/M000047.html
-- doc/classes/ConfigTable/ExecItem.src/M000048.html
-- doc/classes/ConfigTable/ExecItem.src/M000049.html
-- doc/classes/ConfigTable/ExecItem.src/M000050.html
-- doc/classes/ConfigTable/ExecItem.src/M000051.html
-- doc/classes/ConfigTable/SelectItem.src/M000052.html
-- doc/classes/ConfigTable/SelectItem.src/M000053.html
-- doc/classes/ConfigTable/Item.src/M000054.html
-- doc/classes/ConfigTable/Item.src/M000055.html
-- doc/classes/ConfigTable/Item.src/M000056.html
-- doc/classes/ConfigTable/Item.src/M000057.html
-- doc/classes/ConfigTable/Item.src/M000058.html
-- doc/classes/ConfigTable/Item.src/M000059.html
-- doc/classes/ToplevelInstaller.src/M000060.html
-- doc/classes/ToplevelInstaller.src/M000061.html
-- doc/classes/ToplevelInstaller.src/M000062.html
-- doc/classes/ToplevelInstaller.src/M000063.html
-- doc/classes/ToplevelInstaller.src/M000064.html
-- doc/classes/ToplevelInstaller.src/M000065.html
-- doc/classes/ToplevelInstaller.src/M000066.html
-- doc/classes/ToplevelInstaller.src/M000067.html
-- doc/classes/ToplevelInstaller.src/M000068.html
-- doc/classes/ToplevelInstaller.src/M000069.html
-- doc/classes/ToplevelInstaller.src/M000070.html
-- doc/classes/ToplevelInstaller.src/M000071.html
-- doc/classes/ToplevelInstaller.src/M000072.html
-- doc/classes/ToplevelInstaller.src/M000073.html
-- doc/classes/ToplevelInstaller.src/M000074.html
-- doc/classes/ToplevelInstaller.src/M000075.html
-- doc/classes/ToplevelInstaller.src/M000081.html
-- doc/classes/ToplevelInstaller.src/M000082.html
-- doc/classes/ToplevelInstaller.src/M000083.html
-- doc/classes/ToplevelInstaller.src/M000084.html
-- doc/classes/ToplevelInstaller.src/M000085.html
-- doc/classes/ToplevelInstaller.src/M000086.html
-- doc/classes/ToplevelInstaller.src/M000087.html
-- doc/classes/ToplevelInstaller.src/M000088.html
-- doc/classes/ToplevelInstaller.src/M000089.html
-- doc/classes/ToplevelInstaller.src/M000090.html
-- doc/classes/ToplevelInstallerMulti.src/M000127.html
-- doc/classes/ToplevelInstallerMulti.src/M000128.html
-- doc/classes/ToplevelInstallerMulti.src/M000129.html
-- doc/classes/ToplevelInstallerMulti.src/M000130.html
-- doc/classes/ToplevelInstallerMulti.src/M000131.html
-- doc/classes/ToplevelInstallerMulti.src/M000132.html
-- doc/classes/ToplevelInstallerMulti.src/M000133.html
-- doc/classes/ToplevelInstallerMulti.src/M000134.html
-- doc/classes/ToplevelInstallerMulti.src/M000135.html
-- doc/classes/ToplevelInstallerMulti.src/M000136.html
-- doc/classes/ToplevelInstallerMulti.src/M000137.html
-- doc/classes/ToplevelInstallerMulti.src/M000138.html
-- doc/classes/ToplevelInstallerMulti.src/M000139.html
-- doc/classes/ToplevelInstallerMulti.src/M000140.html
-- doc/classes/ToplevelInstallerMulti.src/M000141.html
-- doc/classes/ToplevelInstallerMulti.src/M000142.html
-- doc/classes/Bn4rTest.src/M000180.html
-- doc/classes/Bn4rTest.src/M000181.html
-- doc/classes/Bn4rTest.src/M000182.html
-- doc/classes/Bn4rTest.src/M000183.html
-- doc/classes/Bn4rTest.src/M000184.html
-- doc/classes/Bn4rTest.src/M000185.html
-- doc/classes/Bn4rTest.src/M000186.html
-- doc/classes/Bn4rTest.src/M000187.html
-- doc/classes/Bn4rTest.src/M000188.html
-- doc/classes/Bn4rTest.src/M000189.html
-- doc/classes/Bn4rTest.src/M000190.html
-- doc/classes/Bn4rTest.src/M000191.html
-- doc/classes/Bn4rTest.src/M000192.html
-- doc/classes/Bn4rTest.src/M000193.html
-- doc/classes/Bn4rTest.src/M000194.html
-- doc/classes/Bn4rTest.src/M000195.html
-- doc/classes/Bn4rTest.src/M000196.html
-- doc/classes/Bn4rTest.src/M000197.html
-- doc/classes/Bn4rTest.src/M000198.html
-- doc/classes/Bn4rTest.src/M000199.html
-- doc/classes/Bn4rTest.src/M000200.html
-- doc/classes/Bn4rTest.src/M000201.html
-- doc/classes/Bn4rTest.src/M000202.html
-- doc/classes/Bn4rTest.src/M000203.html
-- doc/classes/Bn4rTest.src/M000204.html
-- doc/classes/Bn4rTest.src/M000205.html
-- doc/classes/Bn4rTest.src/M000206.html
-- doc/classes/Installer.src/M000209.html
-- doc/classes/Installer.src/M000210.html
-- doc/classes/Installer.src/M000211.html
-- doc/classes/Installer.src/M000212.html
-- doc/classes/Installer.src/M000213.html
-- doc/classes/Installer.src/M000214.html
-- doc/classes/Installer.src/M000215.html
-- doc/classes/Installer.src/M000216.html
-- doc/classes/Installer.src/M000217.html
-- doc/classes/Installer.src/M000218.html
-- doc/classes/Installer.src/M000221.html
-- doc/classes/Installer.src/M000225.html
-- doc/classes/Installer.src/M000226.html
-- doc/classes/Installer.src/M000227.html
-- doc/classes/Installer.src/M000229.html
-- doc/classes/Installer.src/M000233.html
-- doc/classes/Installer.src/M000234.html
-- doc/classes/Installer.src/M000235.html
-- doc/classes/Installer.src/M000236.html
-- doc/classes/Installer.src/M000237.html
-- doc/classes/Installer.src/M000238.html
-- doc/classes/Installer.src/M000239.html
-- doc/classes/Installer.src/M000240.html
-- doc/classes/Installer.src/M000241.html
-- doc/classes/Installer.src/M000242.html
-- doc/classes/Installer.src/M000243.html
-- doc/classes/Installer.src/M000244.html
-- doc/classes/Installer.src/M000245.html
-- doc/classes/Installer.src/M000246.html
-- doc/classes/Installer.src/M000247.html
-- doc/classes/Installer.src/M000248.html
-- doc/classes/Installer.src/M000249.html
-- doc/classes/Installer.src/M000250.html
-- doc/classes/Installer.src/M000251.html
-- doc/classes/Installer.src/M000252.html
-- doc/classes/Installer.src/M000253.html
-- doc/classes/Installer.src/M000254.html
-- doc/classes/Installer.src/M000260.html
-- doc/classes/Installer.src/M000261.html
-- doc/classes/Installer.src/M000264.html
-- doc/classes/Installer.src/M000268.html
-- doc/classes/Installer.src/M000269.html
-- doc/classes/Installer.src/M000270.html
-- doc/classes/Installer.src/M000271.html
-- doc/classes/Installer/Shebang.src
-- doc/classes/Installer/Shebang.html
-- doc/classes/Installer/Shebang.src/M000272.html
-- doc/classes/Installer/Shebang.src/M000273.html
-- doc/classes/Installer/Shebang.src/M000274.html
-- doc/classes/Installer/Shebang.src/M000275.html
-- doc/classes/File.src/M000276.html
-- doc/classes/File.src/M000277.html
-- doc/classes/File.src/M000278.html
-- doc/classes/HookScriptAPI.src/M000279.html
-- doc/classes/HookScriptAPI.src/M000281.html
-- doc/classes/HookScriptAPI.src/M000282.html
-- doc/classes/HookScriptAPI.src/M000283.html
-- doc/classes/HookScriptAPI.src/M000284.html
-- doc/classes/HookScriptAPI.src/M000285.html
-- doc/classes/HookScriptAPI.src/M000286.html
-- doc/classes/HookScriptAPI.src/M000287.html
-- doc/classes/HookScriptAPI.src/M000288.html
-- doc/classes/HookScriptAPI.src/M000289.html
-- doc/classes/HookScriptAPI.src/M000290.html
-- doc/classes/FileOperations.src/M000291.html
-- doc/classes/FileOperations.src/M000292.html
-- doc/classes/FileOperations.src/M000293.html
-- doc/classes/FileOperations.src/M000294.html
-- doc/classes/FileOperations.src/M000295.html
-- doc/classes/FileOperations.src/M000296.html
-- doc/classes/FileOperations.src/M000297.html
-- doc/classes/FileOperations.src/M000298.html
-- doc/classes/FileOperations.src/M000299.html
-- doc/classes/FileOperations.src/M000300.html
-- doc/classes/FileOperations.src/M000301.html
-- doc/classes/FileOperations.src/M000302.html
-- doc/classes/FileOperations.src/M000303.html
-- doc/classes/FileOperations.src/M000304.html
-- doc/classes/FileOperations.src/M000305.html
-- doc/classes/FileOperations.src/M000306.html
-- doc/classes/Errno/ENOTEMPTY.html
+- doc/classes/BnTableProbabilitiesGenerator.src/M000051.html
+- test/bn_test_models.rb
 - test/test_helper.rb
+- test/dog-problem.bif
 - test/bn4r_test.rb
 - test/print_bn_output.rb
-- test/bn_test_models.rb
-- test/dog-problem.bif
 - lib/bn4r
 - lib/bn4r.rb
-- lib/bn4r/version.rb
+- lib/bn4r/bn_export.rb
 - lib/bn4r/bn.rb
 - lib/bn4r/bn_table_probabilities.rb
 - lib/bn4r/bn_algorithms.rb
-- lib/bn4r/bn_export.rb
+- lib/bn4r/version.rb
 - lib/bn4r/bn_import.rb
 test_files: []