bn4r 0.1.0 → 0.1.2

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Files changed (433) hide show
  1. data/CHANGELOG +12 -0
  2. data/README +71 -5
  3. data/doc/classes/BNTPGFromPositiveNegativeRelations.html +172 -0
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@@ -0,0 +1,42 @@
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+ <?xml version="1.0" encoding="iso-8859-1"?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+
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+ <html>
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+ <head>
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+ <title>bayes_net_aaile (test/bn_test_models.rb)</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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+ <link rel="stylesheet" href="../../.././rdoc-style.css" type="text/css" media="screen" />
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+ </head>
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+ <body class="standalone-code">
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+ <pre><span class="ruby-comment cmt"># File test/bn_test_models.rb, line 63</span>
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+ <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">bayes_net_aaile</span>
15
+ <span class="ruby-identifier">bn</span> = <span class="ruby-constant">BayesNet</span>.<span class="ruby-identifier">new</span>
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+ <span class="ruby-identifier">rel</span> = <span class="ruby-constant">BayesNetNode</span>.<span class="ruby-identifier">new</span>(<span class="ruby-value str">&quot;relational&quot;</span>)
17
+ <span class="ruby-identifier">q</span> = <span class="ruby-constant">BayesNetNode</span>.<span class="ruby-identifier">new</span>(<span class="ruby-value str">&quot;qualificative&quot;</span>)
18
+ <span class="ruby-identifier">a</span> = <span class="ruby-constant">BayesNetNode</span>.<span class="ruby-identifier">new</span>(<span class="ruby-value str">&quot;Adverbial&quot;</span>)
19
+ <span class="ruby-identifier">bn</span>.<span class="ruby-identifier">add_vertex</span>(<span class="ruby-identifier">rel</span>)
20
+ <span class="ruby-identifier">bn</span>.<span class="ruby-identifier">add_vertex</span>(<span class="ruby-identifier">q</span>)
21
+ <span class="ruby-identifier">bn</span>.<span class="ruby-identifier">add_vertex</span>(<span class="ruby-identifier">a</span>)
22
+
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+ <span class="ruby-comment cmt"># [&quot;preN&quot;, ...] </span>
24
+ <span class="ruby-identifier">preN</span> = <span class="ruby-constant">BayesNetNode</span>.<span class="ruby-identifier">new</span>(<span class="ruby-value str">&quot;preN&quot;</span>)
25
+ <span class="ruby-identifier">bn</span>.<span class="ruby-identifier">add_vertex</span>(<span class="ruby-identifier">preN</span>)
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+
27
+ <span class="ruby-identifier">postN</span> = <span class="ruby-constant">BayesNetNode</span>.<span class="ruby-identifier">new</span>(<span class="ruby-value str">&quot;postN&quot;</span>)
28
+ <span class="ruby-identifier">bn</span>.<span class="ruby-identifier">add_vertex</span>(<span class="ruby-identifier">postN</span>)
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+
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+ <span class="ruby-comment cmt"># bn.add_edge(&quot;ser&quot;)</span>
31
+ <span class="ruby-comment cmt"># bn.add_edge(&quot;G&quot;)</span>
32
+ <span class="ruby-comment cmt"># bn.add_edge(&quot;prep&quot;)</span>
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+
34
+ <span class="ruby-identifier">bn</span>.<span class="ruby-identifier">add_edge</span>(<span class="ruby-identifier">rel</span>, <span class="ruby-identifier">preN</span>)
35
+ <span class="ruby-identifier">bn</span>.<span class="ruby-identifier">add_edge</span>(<span class="ruby-identifier">q</span>, <span class="ruby-identifier">preN</span>)
36
+ <span class="ruby-identifier">bn</span>.<span class="ruby-identifier">add_edge</span>(<span class="ruby-identifier">a</span>, <span class="ruby-identifier">preN</span>)
37
+ <span class="ruby-identifier">bn</span>.<span class="ruby-identifier">add_edge</span>(<span class="ruby-identifier">q</span>, <span class="ruby-identifier">postN</span>)
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+
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+ <span class="ruby-identifier">bn</span>
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+ <span class="ruby-keyword kw">end</span></pre>
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+ </body>
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+ </html>
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+ <?xml version="1.0" encoding="iso-8859-1"?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+
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+ <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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+ <head>
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+ <title>File: print_bn_output.rb</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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+ <meta http-equiv="Content-Script-Type" content="text/javascript" />
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+ <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
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+ <script type="text/javascript">
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+ // <![CDATA[
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+
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+ function popupCode( url ) {
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+ window.open(url, "Code", "resizable=yes,scrollbars=yes,toolbar=no,status=no,height=150,width=400")
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+ }
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+
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+ function toggleCode( id ) {
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+ if ( document.getElementById )
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+ elem = document.getElementById( id );
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+ else if ( document.all )
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+ elem = eval( "document.all." + id );
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+ else
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+ return false;
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+
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+ elemStyle = elem.style;
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+
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+ if ( elemStyle.display != "block" ) {
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+ elemStyle.display = "block"
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+ } else {
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+ elemStyle.display = "none"
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+ }
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+
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+ return true;
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+ }
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+
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+ // Make codeblocks hidden by default
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+ document.writeln( "<style type=\"text/css\">div.method-source-code { display: none }</style>" )
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+
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+ // ]]>
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+ </script>
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+
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+ </head>
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+ <body>
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+
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+
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+
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+ <div id="fileHeader">
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+ <h1>print_bn_output.rb</h1>
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+ <table class="header-table">
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+ <tr class="top-aligned-row">
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+ <td><strong>Path:</strong></td>
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+ <td>test/print_bn_output.rb
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+ </td>
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+ </tr>
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+ <tr class="top-aligned-row">
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+ <td><strong>Last Update:</strong></td>
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+ <td>Thu Nov 09 12:06:20 Hora est�ndar romance 2006</td>
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+ </tr>
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+ </table>
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+ </div>
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+ <!-- banner header -->
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+ <div id="requires-list">
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+ <h3 class="section-bar">Required files</h3>
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+
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+ <div class="name-list">
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+ bn_test_models&nbsp;&nbsp;
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+ </div>
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+ </div>
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+
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+ </div>
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+ <div id="method-list">
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+ <h3 class="section-bar">Methods</h3>
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+ <div class="name-list">
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+ <a href="#M000002">main</a>&nbsp;&nbsp;
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+ </div>
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+ </div>
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+ <a name="M000002"></a>
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+ <div class="method-heading">
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+ <a href="print_bn_output_rb.src/M000002.html" target="Code" class="method-signature"
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+ onclick="popupCode('print_bn_output_rb.src/M000002.html');return false;">
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+ <span class="method-name">main</span><span class="method-args">()</span>
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+ </a>
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+ </div>
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+ <div id="validator-badges">
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+ <p><small><a href="http://validator.w3.org/check/referer">[Validate]</a></small></p>
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+ </div>
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+ </body>
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+ </html>
@@ -0,0 +1,18 @@
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+ <?xml version="1.0" encoding="iso-8859-1"?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+
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+ <html>
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+ <head>
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+ <title>main (test/print_bn_output.rb)</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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+ <link rel="stylesheet" href="../../.././rdoc-style.css" type="text/css" media="screen" />
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+ </head>
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+ <body class="standalone-code">
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+ <pre><span class="ruby-comment cmt"># File test/print_bn_output.rb, line 4</span>
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+ <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">main</span>
15
+ <span class="ruby-identifier">print</span> <span class="ruby-identifier">bayes_net_aima2</span>.<span class="ruby-identifier">to_dot</span>
16
+ <span class="ruby-keyword kw">end</span></pre>
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+ </body>
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+ </html>
@@ -0,0 +1,108 @@
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+ <?xml version="1.0" encoding="iso-8859-1"?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+
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+ <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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+ <head>
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+ <title>File: test_helper.rb</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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+ <meta http-equiv="Content-Script-Type" content="text/javascript" />
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+ <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
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+ <script type="text/javascript">
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+ // <![CDATA[
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+
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+ function popupCode( url ) {
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+ window.open(url, "Code", "resizable=yes,scrollbars=yes,toolbar=no,status=no,height=150,width=400")
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+ }
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+
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+ function toggleCode( id ) {
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+ if ( document.getElementById )
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+ elem = document.getElementById( id );
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+ else if ( document.all )
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+ elem = eval( "document.all." + id );
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+ else
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+ return false;
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+
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+ elemStyle = elem.style;
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+
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+ if ( elemStyle.display != "block" ) {
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+ elemStyle.display = "block"
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+ } else {
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+ elemStyle.display = "none"
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+ }
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+
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+ return true;
36
+ }
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+
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+ // Make codeblocks hidden by default
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+ document.writeln( "<style type=\"text/css\">div.method-source-code { display: none }</style>" )
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+
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+ // ]]>
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+ </script>
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+
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+ </head>
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+ <body>
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+
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+
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+
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+ <div id="fileHeader">
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+ <h1>test_helper.rb</h1>
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+ <table class="header-table">
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+ <tr class="top-aligned-row">
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+ <td><strong>Path:</strong></td>
54
+ <td>test/test_helper.rb
55
+ </td>
56
+ </tr>
57
+ <tr class="top-aligned-row">
58
+ <td><strong>Last Update:</strong></td>
59
+ <td>Tue Oct 31 10:49:54 Hora est�ndar romance 2006</td>
60
+ </tr>
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+ </table>
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+ </div>
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+ <!-- banner header -->
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+
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+ <div id="bodyContent">
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+ <div id="contextContent">
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+ <div id="requires-list">
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+ <h3 class="section-bar">Required files</h3>
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+
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+ <div class="name-list">
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+ test/unit&nbsp;&nbsp;
77
+ </div>
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+ </div>
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+
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+ </div>
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+
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+
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+ </div>
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+
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+ <!-- if method_list -->
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+ </div>
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+
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+
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+ <div id="validator-badges">
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+ <p><small><a href="http://validator.w3.org/check/referer">[Validate]</a></small></p>
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+ </div>
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+
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+ </body>
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+ </html>
@@ -0,0 +1,30 @@
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+
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+ <?xml version="1.0" encoding="iso-8859-1"?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+
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+ <!--
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+
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+ Classes
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+ -->
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+ <head>
14
+ <title>Classes</title>
15
+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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+ <link rel="stylesheet" href="rdoc-style.css" type="text/css" />
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+ <div id="index">
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+ <h1 class="section-bar">Classes</h1>
22
+ <div id="index-entries">
23
+ <a href="classes/BNTPGFromPositiveNegativeRelations.html">BNTPGFromPositiveNegativeRelations</a><br />
24
+ <a href="classes/BayesNet.html">BayesNet</a><br />
25
+ <a href="classes/BayesNetNode.html">BayesNetNode</a><br />
26
+ <a href="classes/BnTableProbabilitiesGenerator.html">BnTableProbabilitiesGenerator</a><br />
27
+ </div>
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+ </body>
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+ <head>
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+ <title>Files</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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+ <link rel="stylesheet" href="rdoc-style.css" type="text/css" />
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+ <body>
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+ <div id="index">
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+ <h1 class="section-bar">Files</h1>
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+ <div id="index-entries">
23
+ <a href="files/README.html">README</a><br />
24
+ <a href="files/lib/bn4r_rb.html">lib/bn4r.rb</a><br />
25
+ <a href="files/lib/bn4r/bn_rb.html">lib/bn4r/bn.rb</a><br />
26
+ <a href="files/lib/bn4r/bn_algorithms_rb.html">lib/bn4r/bn_algorithms.rb</a><br />
27
+ <a href="files/lib/bn4r/bn_export_rb.html">lib/bn4r/bn_export.rb</a><br />
28
+ <a href="files/lib/bn4r/bn_import_rb.html">lib/bn4r/bn_import.rb</a><br />
29
+ <a href="files/lib/bn4r/bn_table_probabilities_rb.html">lib/bn4r/bn_table_probabilities.rb</a><br />
30
+ <a href="files/lib/bn4r/version_rb.html">lib/bn4r/version.rb</a><br />
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+ </div>
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+ </div>
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+ </body>
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@@ -0,0 +1,67 @@
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+ Methods
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+ <head>
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+ <title>Methods</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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+ <link rel="stylesheet" href="rdoc-style.css" type="text/css" />
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+ </head>
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+ <body>
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+ <div id="index">
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+ <h1 class="section-bar">Methods</h1>
22
+ <div id="index-entries">
23
+ <a href="classes/BayesNet.html#M000002">add_edge (BayesNet)</a><br />
24
+ <a href="classes/BayesNet.html#M000010">all_nodes_with_values? (BayesNet)</a><br />
25
+ <a href="classes/BayesNetNode.html#M000033">all_parents_with_values? (BayesNetNode)</a><br />
26
+ <a href="classes/BayesNetNode.html#M000027">clear_value (BayesNetNode)</a><br />
27
+ <a href="classes/BayesNet.html#M000003">clear_values! (BayesNet)</a><br />
28
+ <a href="classes/BayesNetNode.html#M000025">copy (BayesNetNode)</a><br />
29
+ <a href="classes/BayesNet.html#M000021">create_from_xmlbif (BayesNet)</a><br />
30
+ <a href="classes/BayesNetNode.html#M000031">deep (BayesNetNode)</a><br />
31
+ <a href="classes/BayesNet.html#M000016">enumerate_all (BayesNet)</a><br />
32
+ <a href="classes/BayesNet.html#M000012">enumeration_ask (BayesNet)</a><br />
33
+ <a href="files/lib/bn4r/bn_table_probabilities_rb.html#M000001">generate_boolean_combinations (lib/bn4r/bn_table_probabilities.rb)</a><br />
34
+ <a href="classes/BnTableProbabilitiesGenerator.html#M000041">get_node_probability_from_boolean_combination (BnTableProbabilitiesGenerator)</a><br />
35
+ <a href="classes/BNTPGFromPositiveNegativeRelations.html#M000023">get_node_probability_from_boolean_combination (BNTPGFromPositiveNegativeRelations)</a><br />
36
+ <a href="classes/BayesNetNode.html#M000039">get_probability (BayesNetNode)</a><br />
37
+ <a href="classes/BayesNetNode.html#M000040">get_table_index (BayesNetNode)</a><br />
38
+ <a href="classes/BayesNetNode.html#M000037">get_table_size (BayesNetNode)</a><br />
39
+ <a href="classes/BayesNet.html#M000004">get_variable (BayesNet)</a><br />
40
+ <a href="classes/BayesNet.html#M000018">get_vector_value (BayesNet)</a><br />
41
+ <a href="classes/BayesNet.html#M000008">inference_by_enumeration (BayesNet)</a><br />
42
+ <a href="classes/BayesNet.html#M000015">likelihood_weighting (BayesNet)</a><br />
43
+ <a href="classes/BayesNetNode.html#M000024">new (BayesNetNode)</a><br />
44
+ <a href="classes/BayesNet.html#M000011">nodes_ordered_by_dependencies (BayesNet)</a><br />
45
+ <a href="classes/BayesNetNode.html#M000030">num_parents (BayesNetNode)</a><br />
46
+ <a href="classes/BayesNet.html#M000007">num_parents (BayesNet)</a><br />
47
+ <a href="classes/BayesNet.html#M000009">p_v_cond_parents (BayesNet)</a><br />
48
+ <a href="classes/BayesNetNode.html#M000028">parents (BayesNetNode)</a><br />
49
+ <a href="classes/BayesNetNode.html#M000036">parents_assignments (BayesNetNode)</a><br />
50
+ <a href="classes/BayesNet.html#M000013">prior_sample (BayesNet)</a><br />
51
+ <a href="classes/BayesNet.html#M000014">rejection_sampling (BayesNet)</a><br />
52
+ <a href="classes/BayesNetNode.html#M000029">relations (BayesNetNode)</a><br />
53
+ <a href="classes/BayesNet.html#M000006">root? (BayesNet)</a><br />
54
+ <a href="classes/BayesNetNode.html#M000032">root? (BayesNetNode)</a><br />
55
+ <a href="classes/BayesNet.html#M000005">roots (BayesNet)</a><br />
56
+ <a href="classes/BayesNetNode.html#M000038">set_probability (BayesNetNode)</a><br />
57
+ <a href="classes/BayesNetNode.html#M000035">set_probability_table (BayesNetNode)</a><br />
58
+ <a href="classes/BayesNetNode.html#M000026">set_value (BayesNetNode)</a><br />
59
+ <a href="classes/BNTPGFromPositiveNegativeRelations.html#M000022">table_probabilities_for_node (BNTPGFromPositiveNegativeRelations)</a><br />
60
+ <a href="classes/BayesNet.html#M000019">to_dot (BayesNet)</a><br />
61
+ <a href="classes/BayesNetNode.html#M000034">to_s (BayesNetNode)</a><br />
62
+ <a href="classes/BayesNet.html#M000020">to_xbn (BayesNet)</a><br />
63
+ <a href="classes/BayesNet.html#M000017">weighted_sample (BayesNet)</a><br />
64
+ </div>
65
+ </div>
66
+ </body>
67
+ </html>
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