bn4r 0.1.0 → 0.1.2

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Files changed (433) hide show
  1. data/CHANGELOG +12 -0
  2. data/README +71 -5
  3. data/doc/classes/BNTPGFromPositiveNegativeRelations.html +172 -0
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@@ -0,0 +1,23 @@
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+ <?xml version="1.0" encoding="iso-8859-1"?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+
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+ <html>
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+ <head>
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+ <title>get_node_probability_from_boolean_combination (BNTPGFromPositiveNegativeRelations)</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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+ <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
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+ </head>
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+ <body class="standalone-code">
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+ <pre><span class="ruby-comment cmt"># File lib/bn4r/bn_table_probabilities.rb, line 56</span>
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+ <span class="ruby-keyword kw">def</span> <span class="ruby-keyword kw">self</span>.<span class="ruby-identifier">get_node_probability_from_boolean_combination</span>(<span class="ruby-identifier">boolean_combination</span>, <span class="ruby-identifier">type_of_position_impact</span>)
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+ <span class="ruby-identifier">num_eq</span> = <span class="ruby-value">0</span><span class="ruby-value">.0</span>
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+ <span class="ruby-identifier">boolean_combination</span>.<span class="ruby-identifier">size</span>.<span class="ruby-identifier">times</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">i</span><span class="ruby-operator">|</span>
17
+ <span class="ruby-identifier">num_eq</span> <span class="ruby-operator">+=</span> <span class="ruby-value">1.0</span> <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">type_of_position_impact</span>[<span class="ruby-identifier">i</span>] <span class="ruby-operator">&amp;&amp;</span> <span class="ruby-identifier">boolean_combination</span>[<span class="ruby-identifier">i</span>]
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+ <span class="ruby-identifier">num_eq</span> <span class="ruby-operator">+=</span> <span class="ruby-value">1.0</span> <span class="ruby-keyword kw">if</span> <span class="ruby-operator">!</span><span class="ruby-identifier">type_of_position_impact</span>[<span class="ruby-identifier">i</span>] <span class="ruby-operator">&amp;&amp;</span> <span class="ruby-operator">!</span><span class="ruby-identifier">boolean_combination</span>[<span class="ruby-identifier">i</span>]
19
+ }
20
+ <span class="ruby-identifier">num_eq</span> <span class="ruby-operator">/</span> <span class="ruby-identifier">boolean_combination</span>.<span class="ruby-identifier">size</span>.<span class="ruby-identifier">to_f</span>
21
+ <span class="ruby-keyword kw">end</span></pre>
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+ </body>
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+ </html>
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+ <?xml version="1.0" encoding="iso-8859-1"?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+
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+ <html>
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+ <head>
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+ <title>table_probabilities_for_node (BNTPGFromPositiveNegativeRelations)</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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+ <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
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+ </head>
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+ <body class="standalone-code">
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+ <pre><span class="ruby-comment cmt"># File pkg/bn4r-0.1.0/lib/bn4r/bn_table_probabilities.rb, line 25</span>
14
+ <span class="ruby-keyword kw">def</span> <span class="ruby-identifier">table_probabilities_for_node</span>(<span class="ruby-identifier">node</span>, <span class="ruby-identifier">type_of_position_impact</span>)
15
+ <span class="ruby-identifier">raise</span> <span class="ruby-value str">&quot;Node parents and type_of_position_impact with different size&quot;</span> <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">node</span>.<span class="ruby-identifier">parents</span>.<span class="ruby-identifier">size</span> <span class="ruby-operator">!=</span> <span class="ruby-identifier">type_of_position_impact</span>.<span class="ruby-identifier">size</span>
16
+ <span class="ruby-identifier">boolean_combinations</span> = []
17
+ (<span class="ruby-value">2</span><span class="ruby-operator">**</span><span class="ruby-identifier">node</span>.<span class="ruby-identifier">parents</span>.<span class="ruby-identifier">size</span>).<span class="ruby-identifier">times</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">i</span><span class="ruby-operator">|</span>
18
+ <span class="ruby-identifier">boolean_combination</span> = <span class="ruby-constant">Array</span>.<span class="ruby-identifier">new</span>(<span class="ruby-identifier">node</span>.<span class="ruby-identifier">parents</span>.<span class="ruby-identifier">size</span>, <span class="ruby-keyword kw">false</span>)
19
+ <span class="ruby-identifier">actual_value</span> = <span class="ruby-identifier">i</span>
20
+ (<span class="ruby-identifier">node</span>.<span class="ruby-identifier">parents</span>.<span class="ruby-identifier">size</span>).<span class="ruby-identifier">times</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">j</span><span class="ruby-operator">|</span>
21
+ <span class="ruby-identifier">boolean_combination</span>[<span class="ruby-identifier">j</span>] = <span class="ruby-operator">!</span>(<span class="ruby-identifier">actual_value</span><span class="ruby-operator">%</span><span class="ruby-value">2</span> <span class="ruby-operator">==</span> <span class="ruby-value">0</span>)
22
+ <span class="ruby-identifier">actual_value</span> = <span class="ruby-identifier">actual_value</span> <span class="ruby-operator">/</span> <span class="ruby-value">2</span>
23
+ }
24
+ <span class="ruby-identifier">boolean_combinations</span> <span class="ruby-operator">&lt;&lt;</span> <span class="ruby-identifier">boolean_combination</span>
25
+ }
26
+ <span class="ruby-comment cmt">#p boolean_combinations</span>
27
+ <span class="ruby-identifier">table_probabilities</span> = [] <span class="ruby-comment cmt"># Array.new(2**(node.parents.size+1))</span>
28
+ <span class="ruby-identifier">boolean_combinations</span>.<span class="ruby-identifier">each</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">boolean_combination</span><span class="ruby-operator">|</span>
29
+ [<span class="ruby-keyword kw">true</span>,<span class="ruby-keyword kw">false</span>].<span class="ruby-identifier">each</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">node_value</span><span class="ruby-operator">|</span>
30
+ <span class="ruby-identifier">prob</span> = <span class="ruby-constant">BNTPGFromPositiveNegativeRelations</span>.<span class="ruby-identifier">get_node_probability_from_boolean_combination</span>(<span class="ruby-identifier">boolean_combination</span>, <span class="ruby-identifier">type_of_position_impact</span>)
31
+ <span class="ruby-identifier">prob</span> = <span class="ruby-value">1</span> <span class="ruby-operator">-</span> <span class="ruby-identifier">prob</span> <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">node_value</span> <span class="ruby-operator">==</span> <span class="ruby-keyword kw">false</span>
32
+ <span class="ruby-identifier">table_probabilities</span>[<span class="ruby-identifier">node</span>.<span class="ruby-identifier">get_table_index</span>(<span class="ruby-identifier">node_value</span>, <span class="ruby-identifier">boolean_combination</span>)] = <span class="ruby-identifier">prob</span>
33
+ <span class="ruby-comment cmt">#p &quot;pos :&quot; + node.get_table_index(node_value, boolean_combination).to_s</span>
34
+ <span class="ruby-comment cmt">#p &quot;Ok :&quot; + node.get_table_index(node_value, boolean_combination).to_s if node.get_table_index(node_value, boolean_combination) &gt; 2**node.parents.size</span>
35
+ }
36
+ }
37
+ <span class="ruby-comment cmt">#p table_probabilities</span>
38
+ <span class="ruby-identifier">table_probabilities</span>
39
+ <span class="ruby-keyword kw">end</span></pre>
40
+ </body>
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+ </html>
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+ <?xml version="1.0" encoding="iso-8859-1"?>
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ <html>
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+ <head>
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+ <title>get_node_probability_from_boolean_combination (BNTPGFromPositiveNegativeRelations)</title>
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+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
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+ <link rel="stylesheet" href="../.././rdoc-style.css" type="text/css" media="screen" />
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+ </head>
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+ <body class="standalone-code">
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+ <pre><span class="ruby-comment cmt"># File pkg/bn4r-0.1.0/lib/bn4r/bn_table_probabilities.rb, line 56</span>
14
+ <span class="ruby-keyword kw">def</span> <span class="ruby-keyword kw">self</span>.<span class="ruby-identifier">get_node_probability_from_boolean_combination</span>(<span class="ruby-identifier">boolean_combination</span>, <span class="ruby-identifier">type_of_position_impact</span>)
15
+ <span class="ruby-identifier">num_eq</span> = <span class="ruby-value">0</span><span class="ruby-value">.0</span>
16
+ <span class="ruby-identifier">boolean_combination</span>.<span class="ruby-identifier">size</span>.<span class="ruby-identifier">times</span> { <span class="ruby-operator">|</span><span class="ruby-identifier">i</span><span class="ruby-operator">|</span>
17
+ <span class="ruby-identifier">num_eq</span> = <span class="ruby-identifier">num_eq</span> <span class="ruby-operator">+</span> <span class="ruby-value">1.0</span> <span class="ruby-keyword kw">if</span> <span class="ruby-identifier">type_of_position_impact</span>[<span class="ruby-identifier">i</span>] <span class="ruby-operator">&amp;&amp;</span> <span class="ruby-identifier">boolean_combination</span>[<span class="ruby-identifier">i</span>]
18
+ <span class="ruby-identifier">num_eq</span> = <span class="ruby-identifier">num_eq</span> <span class="ruby-operator">+</span> <span class="ruby-value">1.0</span> <span class="ruby-keyword kw">if</span> <span class="ruby-operator">!</span><span class="ruby-identifier">type_of_position_impact</span>[<span class="ruby-identifier">i</span>] <span class="ruby-operator">&amp;&amp;</span> <span class="ruby-operator">!</span><span class="ruby-identifier">boolean_combination</span>[<span class="ruby-identifier">i</span>]
19
+ }
20
+ <span class="ruby-identifier">num_eq</span> <span class="ruby-operator">/</span> <span class="ruby-identifier">boolean_combination</span>.<span class="ruby-identifier">size</span>.<span class="ruby-identifier">to_f</span>
21
+ <span class="ruby-keyword kw">end</span></pre>
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+ </body>
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+ </html>
@@ -0,0 +1,561 @@
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+ <?xml version="1.0" encoding="iso-8859-1"?>
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+ <!DOCTYPE html
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+ PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+
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+ <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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+ <head>
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+ <title>Class: BayesNet</title>
9
+ <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
10
+ <meta http-equiv="Content-Script-Type" content="text/javascript" />
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+ <link rel="stylesheet" href=".././rdoc-style.css" type="text/css" media="screen" />
12
+ <script type="text/javascript">
13
+ // <![CDATA[
14
+
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+ function popupCode( url ) {
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+ window.open(url, "Code", "resizable=yes,scrollbars=yes,toolbar=no,status=no,height=150,width=400")
17
+ }
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+
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+ function toggleCode( id ) {
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+ if ( document.getElementById )
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+ elem = document.getElementById( id );
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+ else if ( document.all )
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+ elem = eval( "document.all." + id );
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+ else
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+ return false;
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+
27
+ elemStyle = elem.style;
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+
29
+ if ( elemStyle.display != "block" ) {
30
+ elemStyle.display = "block"
31
+ } else {
32
+ elemStyle.display = "none"
33
+ }
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+
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+ return true;
36
+ }
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+
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+ // Make codeblocks hidden by default
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+ document.writeln( "<style type=\"text/css\">div.method-source-code { display: none }</style>" )
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+
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+ // ]]>
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+ </script>
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+
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+ </head>
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+ <body>
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+
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+
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+
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+ <div id="classHeader">
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+ <table class="header-table">
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+ <tr class="top-aligned-row">
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+ <td><strong>Class</strong></td>
53
+ <td class="class-name-in-header">BayesNet</td>
54
+ </tr>
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+ <tr class="top-aligned-row">
56
+ <td><strong>In:</strong></td>
57
+ <td>
58
+ <a href="../files/lib/bn4r/bn_rb.html">
59
+ lib/bn4r/bn.rb
60
+ </a>
61
+ <br />
62
+ <a href="../files/lib/bn4r/bn_algorithms_rb.html">
63
+ lib/bn4r/bn_algorithms.rb
64
+ </a>
65
+ <br />
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+ <a href="../files/lib/bn4r/bn_export_rb.html">
67
+ lib/bn4r/bn_export.rb
68
+ </a>
69
+ <br />
70
+ <a href="../files/lib/bn4r/bn_import_rb.html">
71
+ lib/bn4r/bn_import.rb
72
+ </a>
73
+ <br />
74
+ </td>
75
+ </tr>
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+
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+ <tr class="top-aligned-row">
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+ <td><strong>Parent:</strong></td>
79
+ <td>
80
+ DirectedAdjacencyGraph
81
+ </td>
82
+ </tr>
83
+ </table>
84
+ </div>
85
+ <!-- banner header -->
86
+
87
+ <div id="bodyContent">
88
+
89
+
90
+
91
+ <div id="contextContent">
92
+
93
+
94
+
95
+ </div>
96
+
97
+ <div id="method-list">
98
+ <h3 class="section-bar">Methods</h3>
99
+
100
+ <div class="name-list">
101
+ <a href="#M000002">add_edge</a>&nbsp;&nbsp;
102
+ <a href="#M000010">all_nodes_with_values?</a>&nbsp;&nbsp;
103
+ <a href="#M000003">clear_values!</a>&nbsp;&nbsp;
104
+ <a href="#M000021">create_from_xmlbif</a>&nbsp;&nbsp;
105
+ <a href="#M000016">enumerate_all</a>&nbsp;&nbsp;
106
+ <a href="#M000012">enumeration_ask</a>&nbsp;&nbsp;
107
+ <a href="#M000004">get_variable</a>&nbsp;&nbsp;
108
+ <a href="#M000018">get_vector_value</a>&nbsp;&nbsp;
109
+ <a href="#M000008">inference_by_enumeration</a>&nbsp;&nbsp;
110
+ <a href="#M000015">likelihood_weighting</a>&nbsp;&nbsp;
111
+ <a href="#M000011">nodes_ordered_by_dependencies</a>&nbsp;&nbsp;
112
+ <a href="#M000007">num_parents</a>&nbsp;&nbsp;
113
+ <a href="#M000009">p_v_cond_parents</a>&nbsp;&nbsp;
114
+ <a href="#M000013">prior_sample</a>&nbsp;&nbsp;
115
+ <a href="#M000014">rejection_sampling</a>&nbsp;&nbsp;
116
+ <a href="#M000006">root?</a>&nbsp;&nbsp;
117
+ <a href="#M000005">roots</a>&nbsp;&nbsp;
118
+ <a href="#M000019">to_dot</a>&nbsp;&nbsp;
119
+ <a href="#M000020">to_xbn</a>&nbsp;&nbsp;
120
+ <a href="#M000017">weighted_sample</a>&nbsp;&nbsp;
121
+ </div>
122
+ </div>
123
+
124
+ </div>
125
+
126
+
127
+ <!-- if includes -->
128
+
129
+ <div id="section">
130
+
131
+
132
+
133
+
134
+
135
+
136
+
137
+
138
+ <!-- if method_list -->
139
+ <div id="methods">
140
+ <h3 class="section-bar">Public Instance methods</h3>
141
+
142
+ <div id="method-M000002" class="method-detail">
143
+ <a name="M000002"></a>
144
+
145
+ <div class="method-heading">
146
+ <a href="BayesNet.src/M000002.html" target="Code" class="method-signature"
147
+ onclick="popupCode('BayesNet.src/M000002.html');return false;">
148
+ <span class="method-name">add_edge</span><span class="method-args">(parent, child, tag=nil)</span>
149
+ </a>
150
+ </div>
151
+
152
+ <div class="method-description">
153
+ <p>
154
+ Adds a directed edge between parent and child BayesNetNodes labeled with
155
+ tag ( if tag is included, othewise the label is nil ).
156
+ </p>
157
+ </div>
158
+ </div>
159
+
160
+ <div id="method-M000010" class="method-detail">
161
+ <a name="M000010"></a>
162
+
163
+ <div class="method-heading">
164
+ <a href="BayesNet.src/M000010.html" target="Code" class="method-signature"
165
+ onclick="popupCode('BayesNet.src/M000010.html');return false;">
166
+ <span class="method-name">all_nodes_with_values?</span><span class="method-args">()</span>
167
+ </a>
168
+ </div>
169
+
170
+ <div class="method-description">
171
+ <p>
172
+ Returns true if all nodes have values.
173
+ </p>
174
+ </div>
175
+ </div>
176
+
177
+ <div id="method-M000003" class="method-detail">
178
+ <a name="M000003"></a>
179
+
180
+ <div class="method-heading">
181
+ <a href="BayesNet.src/M000003.html" target="Code" class="method-signature"
182
+ onclick="popupCode('BayesNet.src/M000003.html');return false;">
183
+ <span class="method-name">clear_values!</span><span class="method-args">()</span>
184
+ </a>
185
+ </div>
186
+
187
+ <div class="method-description">
188
+ <p>
189
+ Clears the value of all BayesNetNodes in Bayes Net.
190
+ </p>
191
+ </div>
192
+ </div>
193
+
194
+ <div id="method-M000021" class="method-detail">
195
+ <a name="M000021"></a>
196
+
197
+ <div class="method-heading">
198
+ <a href="BayesNet.src/M000021.html" target="Code" class="method-signature"
199
+ onclick="popupCode('BayesNet.src/M000021.html');return false;">
200
+ <span class="method-name">create_from_xmlbif</span><span class="method-args">(file, bn=self)</span>
201
+ </a>
202
+ </div>
203
+
204
+ <div class="method-description">
205
+ </div>
206
+ </div>
207
+
208
+ <div id="method-M000012" class="method-detail">
209
+ <a name="M000012"></a>
210
+
211
+ <div class="method-heading">
212
+ <a href="BayesNet.src/M000012.html" target="Code" class="method-signature"
213
+ onclick="popupCode('BayesNet.src/M000012.html');return false;">
214
+ <span class="method-name">enumeration_ask</span><span class="method-args">(x,e, bn_vertices = vertices)</span>
215
+ </a>
216
+ </div>
217
+
218
+ <div class="method-description">
219
+ <p>
220
+ ENUMERATION ASK algorithm
221
+ </p>
222
+ <p>
223
+ Implementation based on: S.Russell, P.Norving, &quot;Artificial
224
+ Intelligence, A Modern Approach&quot;, 2nd Edition. pp 506
225
+ </p>
226
+ <p>
227
+ <b>x</b> &#8212;&gt; query variable
228
+ </p>
229
+ <p>
230
+ <b>e</b> &#8212;&gt; variables with observed values
231
+ </p>
232
+ </div>
233
+ </div>
234
+
235
+ <div id="method-M000004" class="method-detail">
236
+ <a name="M000004"></a>
237
+
238
+ <div class="method-heading">
239
+ <a href="BayesNet.src/M000004.html" target="Code" class="method-signature"
240
+ onclick="popupCode('BayesNet.src/M000004.html');return false;">
241
+ <span class="method-name">get_variable</span><span class="method-args">( text )</span>
242
+ </a>
243
+ </div>
244
+
245
+ <div class="method-description">
246
+ <p>
247
+ Gets the variable with given name.
248
+ </p>
249
+ </div>
250
+ </div>
251
+
252
+ <div id="method-M000008" class="method-detail">
253
+ <a name="M000008"></a>
254
+
255
+ <div class="method-heading">
256
+ <a href="BayesNet.src/M000008.html" target="Code" class="method-signature"
257
+ onclick="popupCode('BayesNet.src/M000008.html');return false;">
258
+ <span class="method-name">inference_by_enumeration</span><span class="method-args">()</span>
259
+ </a>
260
+ </div>
261
+
262
+ <div class="method-description">
263
+ <p>
264
+ Return the probability of a distribution in the bayes net all nodes in the
265
+ Bayes Net must have a value, otherwise will raise a exception
266
+ </p>
267
+ </div>
268
+ </div>
269
+
270
+ <div id="method-M000015" class="method-detail">
271
+ <a name="M000015"></a>
272
+
273
+ <div class="method-heading">
274
+ <a href="BayesNet.src/M000015.html" target="Code" class="method-signature"
275
+ onclick="popupCode('BayesNet.src/M000015.html');return false;">
276
+ <span class="method-name">likelihood_weighting</span><span class="method-args">( x, e, n, bn = self )</span>
277
+ </a>
278
+ </div>
279
+
280
+ <div class="method-description">
281
+ <p>
282
+ Returns an estimation of P(X=x|e) = &lt;P(X=x|e), 1 - P(X=x|e)&gt;
283
+ obtained.
284
+ </p>
285
+ <p>
286
+ Implementation based on: S.Russell, P.Norving, &quot;Artificial
287
+ Intelligence, A Modern Approach&quot;, 2nd Edition. pp 515
288
+ </p>
289
+ <p>
290
+ <b>x</b> &#8212;&gt; query variable
291
+ </p>
292
+ <p>
293
+ <b>e</b> &#8212;&gt; variables with observed values, must be a copy of the
294
+ nodes in bn ( Can&#8216;t be the BayesNetNodes instaces that are in bn ).
295
+ </p>
296
+ <p>
297
+ <b>n</b> &#8212;&gt; Number of samples generated
298
+ </p>
299
+ <p>
300
+ WARNING: Clears the values of current bn!
301
+ </p>
302
+ </div>
303
+ </div>
304
+
305
+ <div id="method-M000011" class="method-detail">
306
+ <a name="M000011"></a>
307
+
308
+ <div class="method-heading">
309
+ <a href="BayesNet.src/M000011.html" target="Code" class="method-signature"
310
+ onclick="popupCode('BayesNet.src/M000011.html');return false;">
311
+ <span class="method-name">nodes_ordered_by_dependencies</span><span class="method-args">(nodes = vertices, bn_ordered = Array.new)</span>
312
+ </a>
313
+ </div>
314
+
315
+ <div class="method-description">
316
+ <p>
317
+ Returns nodes ordered by dependencies ( from those who haven&#8217;t (
318
+ roots ) to leaves ).
319
+ </p>
320
+ </div>
321
+ </div>
322
+
323
+ <div id="method-M000007" class="method-detail">
324
+ <a name="M000007"></a>
325
+
326
+ <div class="method-heading">
327
+ <a href="BayesNet.src/M000007.html" target="Code" class="method-signature"
328
+ onclick="popupCode('BayesNet.src/M000007.html');return false;">
329
+ <span class="method-name">num_parents</span><span class="method-args">(v)</span>
330
+ </a>
331
+ </div>
332
+
333
+ <div class="method-description">
334
+ <p>
335
+ Returns the number of parents of a node.
336
+ </p>
337
+ </div>
338
+ </div>
339
+
340
+ <div id="method-M000009" class="method-detail">
341
+ <a name="M000009"></a>
342
+
343
+ <div class="method-heading">
344
+ <a href="BayesNet.src/M000009.html" target="Code" class="method-signature"
345
+ onclick="popupCode('BayesNet.src/M000009.html');return false;">
346
+ <span class="method-name">p_v_cond_parents</span><span class="method-args">(v)</span>
347
+ </a>
348
+ </div>
349
+
350
+ <div class="method-description">
351
+ <p>
352
+ Returns the probability of a node conditioned to his parents:
353
+ </p>
354
+ <pre>
355
+ P(v|parents(v))
356
+ </pre>
357
+ </div>
358
+ </div>
359
+
360
+ <div id="method-M000013" class="method-detail">
361
+ <a name="M000013"></a>
362
+
363
+ <div class="method-heading">
364
+ <a href="BayesNet.src/M000013.html" target="Code" class="method-signature"
365
+ onclick="popupCode('BayesNet.src/M000013.html');return false;">
366
+ <span class="method-name">prior_sample</span><span class="method-args">(nodes_ordered = nodes_ordered_by_dependencies)</span>
367
+ </a>
368
+ </div>
369
+
370
+ <div class="method-description">
371
+ <p>
372
+ Returns a sample from prior joint distribution specified by the network.
373
+ </p>
374
+ <p>
375
+ Implementation based on: S.Russell, P.Norving, &quot;Artificial
376
+ Intelligence, A Modern Approach&quot;, 2nd Edition. pp 511-512
377
+ </p>
378
+ <p>
379
+ The input are the nodes of the bn ordered by dependencies see <a
380
+ href="BayesNet.html#M000011">nodes_ordered_by_dependencies</a>
381
+ </p>
382
+ </div>
383
+ </div>
384
+
385
+ <div id="method-M000014" class="method-detail">
386
+ <a name="M000014"></a>
387
+
388
+ <div class="method-heading">
389
+ <a href="BayesNet.src/M000014.html" target="Code" class="method-signature"
390
+ onclick="popupCode('BayesNet.src/M000014.html');return false;">
391
+ <span class="method-name">rejection_sampling</span><span class="method-args">( x, e, n, bn = self )</span>
392
+ </a>
393
+ </div>
394
+
395
+ <div class="method-description">
396
+ <p>
397
+ Returns an estimation of P(X=x|e) = &lt;P(X=x|e), 1 - P(X=x|e)&gt;
398
+ obtained. Generates samples from prior joint distribution specified by the
399
+ network, rejects all those that do not match the evidence, and finally
400
+ counts hoy often X = x occurs in remaining samples.
401
+ </p>
402
+ <p>
403
+ Caution, this algorthm is unusable for complex problems because rejects
404
+ many samples!
405
+ </p>
406
+ <p>
407
+ Implementation based on: S.Russell, P.Norving, &quot;Artificial
408
+ Intelligence, A Modern Approach&quot;, 2nd Edition. pp 513
409
+ </p>
410
+ <p>
411
+ <b>x</b> &#8212;&gt; query variable
412
+ </p>
413
+ <p>
414
+ <b>e</b> &#8212;&gt; variables with observed values
415
+ </p>
416
+ <p>
417
+ <b>n</b> &#8212;&gt; Number of samples generated
418
+ </p>
419
+ </div>
420
+ </div>
421
+
422
+ <div id="method-M000006" class="method-detail">
423
+ <a name="M000006"></a>
424
+
425
+ <div class="method-heading">
426
+ <a href="BayesNet.src/M000006.html" target="Code" class="method-signature"
427
+ onclick="popupCode('BayesNet.src/M000006.html');return false;">
428
+ <span class="method-name">root?</span><span class="method-args">(v)</span>
429
+ </a>
430
+ </div>
431
+
432
+ <div class="method-description">
433
+ <p>
434
+ Returns true/false if given Node is root.
435
+ </p>
436
+ </div>
437
+ </div>
438
+
439
+ <div id="method-M000005" class="method-detail">
440
+ <a name="M000005"></a>
441
+
442
+ <div class="method-heading">
443
+ <a href="BayesNet.src/M000005.html" target="Code" class="method-signature"
444
+ onclick="popupCode('BayesNet.src/M000005.html');return false;">
445
+ <span class="method-name">roots</span><span class="method-args">()</span>
446
+ </a>
447
+ </div>
448
+
449
+ <div class="method-description">
450
+ <p>
451
+ Returns the root nodes of the Bayes Net.
452
+ </p>
453
+ </div>
454
+ </div>
455
+
456
+ <div id="method-M000019" class="method-detail">
457
+ <a name="M000019"></a>
458
+
459
+ <div class="method-heading">
460
+ <a href="BayesNet.src/M000019.html" target="Code" class="method-signature"
461
+ onclick="popupCode('BayesNet.src/M000019.html');return false;">
462
+ <span class="method-name">to_dot</span><span class="method-args">(bn = self)</span>
463
+ </a>
464
+ </div>
465
+
466
+ <div class="method-description">
467
+ </div>
468
+ </div>
469
+
470
+ <div id="method-M000020" class="method-detail">
471
+ <a name="M000020"></a>
472
+
473
+ <div class="method-heading">
474
+ <a href="BayesNet.src/M000020.html" target="Code" class="method-signature"
475
+ onclick="popupCode('BayesNet.src/M000020.html');return false;">
476
+ <span class="method-name">to_xbn</span><span class="method-args">(bn = self)</span>
477
+ </a>
478
+ </div>
479
+
480
+ <div class="method-description">
481
+ </div>
482
+ </div>
483
+
484
+ <h3 class="section-bar">Protected Instance methods</h3>
485
+
486
+ <div id="method-M000016" class="method-detail">
487
+ <a name="M000016"></a>
488
+
489
+ <div class="method-heading">
490
+ <a href="BayesNet.src/M000016.html" target="Code" class="method-signature"
491
+ onclick="popupCode('BayesNet.src/M000016.html');return false;">
492
+ <span class="method-name">enumerate_all</span><span class="method-args">(vars, e)</span>
493
+ </a>
494
+ </div>
495
+
496
+ <div class="method-description">
497
+ <p>
498
+ Auxiliar function to compute Enumeration Ask Algorithm
499
+ </p>
500
+ </div>
501
+ </div>
502
+
503
+ <div id="method-M000018" class="method-detail">
504
+ <a name="M000018"></a>
505
+
506
+ <div class="method-heading">
507
+ <a href="BayesNet.src/M000018.html" target="Code" class="method-signature"
508
+ onclick="popupCode('BayesNet.src/M000018.html');return false;">
509
+ <span class="method-name">get_vector_value</span><span class="method-args">(vertices_vector, bn_vertices_ordered)</span>
510
+ </a>
511
+ </div>
512
+
513
+ <div class="method-description">
514
+ <p>
515
+ Axiliar function that returns an array of bn_vertices_ordered.size
516
+ positions with nil if position aren&#8217;t in vertices_vector, and value
517
+ if there&#8217;s a match in vertices_vector.
518
+ </p>
519
+ </div>
520
+ </div>
521
+
522
+ <div id="method-M000017" class="method-detail">
523
+ <a name="M000017"></a>
524
+
525
+ <div class="method-heading">
526
+ <a href="BayesNet.src/M000017.html" target="Code" class="method-signature"
527
+ onclick="popupCode('BayesNet.src/M000017.html');return false;">
528
+ <span class="method-name">weighted_sample</span><span class="method-args">(e, bn = self)</span>
529
+ </a>
530
+ </div>
531
+
532
+ <div class="method-description">
533
+ <p>
534
+ Returns an event and a weight.
535
+ </p>
536
+ <p>
537
+ Implementation based on: S.Russell, P.Norving, &quot;Artificial
538
+ Intelligence, A Modern Approach&quot;, 2nd Edition. pp 515
539
+ </p>
540
+ <p>
541
+ <b>e</b> &#8212;&gt; variables with observed values
542
+ </p>
543
+ <p>
544
+ WARNING: Clears the values of current bn!
545
+ </p>
546
+ </div>
547
+ </div>
548
+
549
+
550
+ </div>
551
+
552
+
553
+ </div>
554
+
555
+
556
+ <div id="validator-badges">
557
+ <p><small><a href="http://validator.w3.org/check/referer">[Validate]</a></small></p>
558
+ </div>
559
+
560
+ </body>
561
+ </html>