bn4r 0.1.0 → 0.1.2
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- data/CHANGELOG +12 -0
- data/README +71 -5
- data/doc/classes/BNTPGFromPositiveNegativeRelations.html +172 -0
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<pre><span class="ruby-comment cmt"># File setup.rb, line 1119</span>
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|
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<pre><span class="ruby-comment cmt"># File setup.rb, line 1141</span>
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<pre><span class="ruby-comment cmt"># File setup.rb, line 1146</span>
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<span class="ruby-ivar">@config</span>.<span class="ruby-identifier">verbose?</span>
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<pre><span class="ruby-comment cmt"># File setup.rb, line 1151</span>
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<span class="ruby-ivar">@config</span>.<span class="ruby-identifier">no_harm?</span>
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data/doc/created.rid
ADDED
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Fri Nov 10 11:22:37 Hora est�ndar romance 2006
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<td>README
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<td>Fri Nov 10 11:22:36 Hora est�ndar romance 2006</td>
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<h1>Bayesian Networks for Ruby ( bn4r )</h1>
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bn4r is a bayesian networks library on ruby that provides the user with
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classes for create bayesian networks and diverse algorithms for solve them.
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Website: <a href="http://bn4r.rubyforge.org">bn4r.rubyforge.org</a>
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Rubyforge Project: <a
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<h2>Dependencies</h2>
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The library consists on the object <a
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a especialization of RGL::DirectedAdjacencyGraph ( <a
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href="http://rgl.rubyforge.org">rgl.rubyforge.org</a> ).
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The file bn_algorithms.rb has the implementation of the inference
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algorithms that can be used to solve <a
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Finally, a set of objects and methods are given to automaticly fill <a
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href="../classes/BayesNetNode.html">BayesNetNode</a> probabilities tables.
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<h2>Play a bit …</h2>
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gem install bn4r
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<li>Include the bn4r
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require 'bn4r'
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<li>Create your first bayes net
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<pre>
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# Create BayesNet
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bn_aima = BayesNet.new
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# Create nodes for the Bayes Net (BayesNetNodes)
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burglary = BayesNetNode.new("Burglary")
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earthquake = BayesNetNode.new("Earthquake")
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alarm = BayesNetNode.new("Alarm")
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john_calls = BayesNetNode.new("JohnCalls")
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mary_calls = BayesNetNode.new("MaryCalls")
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# Add nodes ( vertex ) to the BayesNet
|
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bn_aima.add_vertex(burglary)
|
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bn_aima.add_vertex(earthquake)
|
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bn_aima.add_vertex(alarm)
|
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bn_aima.add_vertex(john_calls)
|
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bn_aima.add_vertex(mary_calls)
|
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|
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# Add relations ( edges ) between nodes in the BayesNet
|
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|
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bn_aima.add_edge(burglary,alarm)
|
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bn_aima.add_edge(earthquake,alarm)
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bn_aima.add_edge(alarm,john_calls)
|
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bn_aima.add_edge(alarm,mary_calls)
|
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# Assign probabilities to each node
|
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burglary.set_probability_table([], [0.001, 0.999] )
|
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earthquake.set_probability_table([], [0.002, 0.998] )
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alarm.set_probability_table([burglary,earthquake], [0.95, 0.05, 0.94, 0.06, 0.29, 0.61, 0.001,0.999] )
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|
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john_calls.set_probability_table([alarm], [0.90,0.10,0.05,0.95])
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mary_calls.set_probability_table([alarm], [0.70,0.30,0.01,0.99])
|
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</pre>
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</li>
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<li>Solve it!
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<pre>
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# John and Mary are calling ...
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john_calls.set_value(true)
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mary_calls.set_value(true)
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# Why?
|
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|
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is_there_a_burglary = bn_aima.enumeration_ask( burglary, [john_calls, mary_calls] )
|
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puts "Call the police!" if is_there_a_burglary[0] > is_there_a_burglary[1]
|
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|
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is_the_alarm_on = bn_aima.enumeration_ask( alarm, [john_calls, mary_calls] )
|
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puts "Run home, your alarm is distubing the neigborhood!" if is_the_alarm_on[0] > is_the_alarm_on[1]
|
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|
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|
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+
is_there_a_earthquake = bn_aima.enumeration_ask( earthquake, [john_calls, mary_calls] )
|
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puts "Calm yourself, there isn't a earthquake ;)" if is_there_a_earthquake[0] < is_there_a_earthquake[1]
|
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|
+
</pre>
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</li>
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+
<li>See how your bayes net looks like
|
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|
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|
+
<pre>
|
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|
+
# In .dot format
|
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|
+
bn_aima.to_dot
|
|
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|
+
|
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|
+
# In Microsoft Belief Networks (.xbn) format
|
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|
+
# (download for free in: http://research.microsoft.com/adapt/MSBNx )
|
|
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|
+
bn_aima.to_xbn
|
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|
+
</pre>
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</li>
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</ol>
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<h2>Documentation</h2>
|
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<p>
|
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Documentation can be found at <a
|
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href="http://bn4r.rubyforge.org/rdoc">bn4r.rubyforge.org/rdoc</a> or can be
|
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generated using rdoc tool under the source code with:
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</p>
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<pre>
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rdoc README lib
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</pre>
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<h2>Credits</h2>
|
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<p>
|
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|
+
Thanks to N�ria Bel ( <a
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href="http://www.upf.edu/pdi/iula/nuria.bel">www.upf.edu/pdi/iula/nuria.bel</a>
|
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) for her work in this project without her it cannot be done.
|
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</p>
|
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<p>
|
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|
+
Thanks to Ryan Dahl for his work in <a
|
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|
+
href="http://www.math.rochester.edu/people/grads/rld/bayesnets">www.math.rochester.edu/people/grads/rld/bayesnets</a>
|
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|
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that was the inspiration of the project.
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</p>
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<p>
|
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|
+
Also thanks to all the ruby community.
|
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</p>
|
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216
|
+
<h2>Copying</h2>
|
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|
+
<p>
|
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|
+
This work is developed by Sergio Espeja ( <a
|
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|
+
href="http://www.upf.edu/pdi/iula/sergio.espeja">www.upf.edu/pdi/iula/sergio.espeja</a>,
|
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|
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sergio.espeja at gmail.com ) mainly in Institut Universitari de Ling�istica
|
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Aplicada of Universitat Pompeu Fabra ( <a
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href="http://www.iula.upf.es">www.iula.upf.es</a> ), and also in bee.com.es
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( <a href="http://bee.com.es">bee.com.es</a> ).
|
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</p>
|
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<p>
|
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|
+
It is free software, and may be redistributed under GPL license.
|
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</p>
|
|
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|
+
<h2>Support</h2>
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<p>
|
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|
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Please contact me in <a
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href="http://rubyforge.org/projects/bn4r">rubyforge.org/projects/bn4r</a>.
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<td>Tue Nov 07 11:56:38 Hora est�ndar romance 2006</td>
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Inference Algorithms for Bayesian Network Library for Ruby
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</p>
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<p>
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Author: Sergio Espeja ( <a
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href="http://www.upf.edu/pdi/iula/sergio.espeja">www.upf.edu/pdi/iula/sergio.espeja</a>,
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78
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sergio.espeja at gmail.com )
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</p>
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<p>
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Developed in: IULA ( <a href="http://www.iula.upf.es">www.iula.upf.es</a> )
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82
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and in bee.com.es ( <a href="http://bee.com.es">bee.com.es</a> )
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</p>
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<h2>Current implemented algorithms</h2>
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<ul>
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<li>enumeration_ask
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<li>prior_sample
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<li>likelihood_weighting
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</li>
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</div>
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<div id="validator-badges">
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<p><small><a href="http://validator.w3.org/check/referer">[Validate]</a></small></p>
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<h1>bn_export.rb</h1>
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<table class="header-table">
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<tr class="top-aligned-row">
|
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<td><strong>Path:</strong></td>
|
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|
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<td>lib/bn4r/bn_export.rb
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<td><strong>Last Update:</strong></td>
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|
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<td>Thu Nov 09 14:31:34 Hora est�ndar romance 2006</td>
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<div id="description">
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<p>
|
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|
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Export fuctions of Bayesian Network Library for Ruby
|
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|
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</p>
|
|
75
|
+
<p>
|
|
76
|
+
Author: Sergio Espeja ( <a
|
|
77
|
+
href="http://www.upf.edu/pdi/iula/sergio.espeja">www.upf.edu/pdi/iula/sergio.espeja</a>,
|
|
78
|
+
sergio.espeja at gmail.com )
|
|
79
|
+
</p>
|
|
80
|
+
<p>
|
|
81
|
+
Developed in: IULA ( <a href="http://www.iula.upf.es">www.iula.upf.es</a> )
|
|
82
|
+
and in bee.com.es ( <a href="http://bee.com.es">bee.com.es</a> )
|
|
83
|
+
</p>
|
|
84
|
+
<h2>Export formats implemented</h2>
|
|
85
|
+
<ul>
|
|
86
|
+
<li>dot (Graphviz .dot files)
|
|
87
|
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|
|
88
|
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</li>
|
|
89
|
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<li>xbn (Microsoft Belief Networks)
|
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</li>
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</ul>
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</div>
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|
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</div>
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<!-- if includes -->
|
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|
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<div id="section">
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|
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<!-- if method_list -->
|
|
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|
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|
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|
+
</div>
|
|
118
|
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|
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|
|
120
|
+
<div id="validator-badges">
|
|
121
|
+
<p><small><a href="http://validator.w3.org/check/referer">[Validate]</a></small></p>
|
|
122
|
+
</div>
|
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123
|
+
|
|
124
|
+
</body>
|
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|
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</html>
|