bio-ucsc-api 0.2.0 → 0.2.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (534) hide show
  1. data/README.rdoc +79 -47
  2. data/Rakefile +4 -2
  3. data/VERSION +1 -1
  4. data/bio-ucsc-api.gemspec +408 -3
  5. data/lib/bio-ucsc.rb +162 -8
  6. data/lib/bio-ucsc/ailmel1.rb +21 -0
  7. data/lib/bio-ucsc/ailmel1/db_connection.rb +57 -0
  8. data/lib/bio-ucsc/anocar2.rb +22 -0
  9. data/lib/bio-ucsc/anocar2/db_connection.rb +57 -0
  10. data/lib/bio-ucsc/anogam1.rb +30 -0
  11. data/lib/bio-ucsc/anogam1/chaindm3.rb +81 -0
  12. data/lib/bio-ucsc/anogam1/chaindm3link.rb +81 -0
  13. data/lib/bio-ucsc/anogam1/db_connection.rb +57 -0
  14. data/lib/bio-ucsc/anogam1/est.rb +81 -0
  15. data/lib/bio-ucsc/anogam1/gap.rb +81 -0
  16. data/lib/bio-ucsc/anogam1/gold.rb +81 -0
  17. data/lib/bio-ucsc/anogam1/intronest.rb +81 -0
  18. data/lib/bio-ucsc/anogam1/mrna.rb +81 -0
  19. data/lib/bio-ucsc/anogam1/rmsk.rb +78 -0
  20. data/lib/bio-ucsc/apimel2.rb +26 -0
  21. data/lib/bio-ucsc/apimel2/chaindm2.rb +81 -0
  22. data/lib/bio-ucsc/apimel2/chaindm2link.rb +81 -0
  23. data/lib/bio-ucsc/apimel2/db_connection.rb +57 -0
  24. data/lib/bio-ucsc/aplcal1.rb +33 -0
  25. data/lib/bio-ucsc/aplcal1/chaincaepb1.rb +81 -0
  26. data/lib/bio-ucsc/aplcal1/chaincaepb1link.rb +81 -0
  27. data/lib/bio-ucsc/aplcal1/chaincaerem2.rb +81 -0
  28. data/lib/bio-ucsc/aplcal1/chaincaerem2link.rb +81 -0
  29. data/lib/bio-ucsc/aplcal1/chaincb3.rb +81 -0
  30. data/lib/bio-ucsc/aplcal1/chaincb3link.rb +81 -0
  31. data/lib/bio-ucsc/aplcal1/chaince6.rb +81 -0
  32. data/lib/bio-ucsc/aplcal1/chaince6link.rb +81 -0
  33. data/lib/bio-ucsc/aplcal1/db_connection.rb +57 -0
  34. data/lib/bio-ucsc/aplcal1/gap.rb +81 -0
  35. data/lib/bio-ucsc/aplcal1/gold.rb +81 -0
  36. data/lib/bio-ucsc/aplcal1/rmsk.rb +78 -0
  37. data/lib/bio-ucsc/bostau4.rb +24 -0
  38. data/lib/bio-ucsc/bostau4/db_connection.rb +57 -0
  39. data/lib/bio-ucsc/braflo1.rb +32 -0
  40. data/lib/bio-ucsc/braflo1/chaingalgal3.rb +81 -0
  41. data/lib/bio-ucsc/braflo1/chaingalgal3link.rb +81 -0
  42. data/lib/bio-ucsc/braflo1/chainhg18.rb +81 -0
  43. data/lib/bio-ucsc/braflo1/chainhg18link.rb +81 -0
  44. data/lib/bio-ucsc/braflo1/chainmm9.rb +81 -0
  45. data/lib/bio-ucsc/braflo1/chainmm9link.rb +81 -0
  46. data/lib/bio-ucsc/braflo1/chainpetmar1.rb +81 -0
  47. data/lib/bio-ucsc/braflo1/chainpetmar1link.rb +81 -0
  48. data/lib/bio-ucsc/braflo1/db_connection.rb +57 -0
  49. data/lib/bio-ucsc/braflo1/gap.rb +81 -0
  50. data/lib/bio-ucsc/braflo1/gold.rb +81 -0
  51. data/lib/bio-ucsc/caejap1.rb +26 -0
  52. data/lib/bio-ucsc/caejap1/chaince6.rb +81 -0
  53. data/lib/bio-ucsc/caejap1/chaince6link.rb +81 -0
  54. data/lib/bio-ucsc/caejap1/db_connection.rb +57 -0
  55. data/lib/bio-ucsc/caejap1/gap.rb +81 -0
  56. data/lib/bio-ucsc/caejap1/gold.rb +81 -0
  57. data/lib/bio-ucsc/caepb2.rb +26 -0
  58. data/lib/bio-ucsc/caepb2/chaince6.rb +81 -0
  59. data/lib/bio-ucsc/caepb2/chaince6link.rb +81 -0
  60. data/lib/bio-ucsc/caepb2/db_connection.rb +57 -0
  61. data/lib/bio-ucsc/caepb2/gap.rb +81 -0
  62. data/lib/bio-ucsc/caepb2/gold.rb +81 -0
  63. data/lib/bio-ucsc/caerem3.rb +26 -0
  64. data/lib/bio-ucsc/caerem3/chaince6.rb +81 -0
  65. data/lib/bio-ucsc/caerem3/chaince6link.rb +81 -0
  66. data/lib/bio-ucsc/caerem3/db_connection.rb +57 -0
  67. data/lib/bio-ucsc/caerem3/gap.rb +81 -0
  68. data/lib/bio-ucsc/caerem3/gold.rb +81 -0
  69. data/lib/bio-ucsc/caljac3.rb +24 -0
  70. data/lib/bio-ucsc/caljac3/db_connection.rb +55 -0
  71. data/lib/bio-ucsc/canfam2.rb +39 -0
  72. data/lib/bio-ucsc/canfam2/chainbostau4.rb +81 -0
  73. data/lib/bio-ucsc/canfam2/chainbostau4link.rb +81 -0
  74. data/lib/bio-ucsc/canfam2/chainmm9.rb +81 -0
  75. data/lib/bio-ucsc/canfam2/chainmm9link.rb +81 -0
  76. data/lib/bio-ucsc/canfam2/chainrn4.rb +81 -0
  77. data/lib/bio-ucsc/canfam2/chainrn4link.rb +81 -0
  78. data/lib/bio-ucsc/canfam2/chainself.rb +81 -0
  79. data/lib/bio-ucsc/canfam2/chainselflink.rb +81 -0
  80. data/lib/bio-ucsc/canfam2/db_connection.rb +57 -0
  81. data/lib/bio-ucsc/canfam2/est.rb +81 -0
  82. data/lib/bio-ucsc/canfam2/gap.rb +81 -0
  83. data/lib/bio-ucsc/canfam2/gold.rb +81 -0
  84. data/lib/bio-ucsc/canfam2/intronest.rb +81 -0
  85. data/lib/bio-ucsc/canfam2/mrna.rb +81 -0
  86. data/lib/bio-ucsc/canfam2/rmsk.rb +78 -0
  87. data/lib/bio-ucsc/cavpor3.rb +21 -0
  88. data/lib/bio-ucsc/cavpor3/db_connection.rb +57 -0
  89. data/lib/bio-ucsc/cb3.rb +36 -0
  90. data/lib/bio-ucsc/cb3/chaincaepb1.rb +81 -0
  91. data/lib/bio-ucsc/cb3/chaincaepb1link.rb +81 -0
  92. data/lib/bio-ucsc/cb3/chaincaerem2.rb +81 -0
  93. data/lib/bio-ucsc/cb3/chaincaerem2link.rb +81 -0
  94. data/lib/bio-ucsc/cb3/chaince6.rb +81 -0
  95. data/lib/bio-ucsc/cb3/chaince6link.rb +81 -0
  96. data/lib/bio-ucsc/cb3/chainpripac1.rb +81 -0
  97. data/lib/bio-ucsc/cb3/chainpripac1link.rb +81 -0
  98. data/lib/bio-ucsc/cb3/db_connection.rb +57 -0
  99. data/lib/bio-ucsc/cb3/est.rb +81 -0
  100. data/lib/bio-ucsc/cb3/gap.rb +81 -0
  101. data/lib/bio-ucsc/cb3/gold.rb +81 -0
  102. data/lib/bio-ucsc/cb3/intronest.rb +81 -0
  103. data/lib/bio-ucsc/cb3/mrna.rb +81 -0
  104. data/lib/bio-ucsc/cb3/rmsk.rb +78 -0
  105. data/lib/bio-ucsc/ce6/chaincaejap1.rb +2 -2
  106. data/lib/bio-ucsc/ce6/chaincaejap1link.rb +2 -2
  107. data/lib/bio-ucsc/ce6/chaincaepb2.rb +2 -2
  108. data/lib/bio-ucsc/ce6/chaincaepb2link.rb +2 -2
  109. data/lib/bio-ucsc/ce6/chaincaerem3.rb +2 -2
  110. data/lib/bio-ucsc/ce6/chaincaerem3link.rb +2 -2
  111. data/lib/bio-ucsc/ce6/chaincb3.rb +2 -2
  112. data/lib/bio-ucsc/ce6/chaincb3link.rb +2 -2
  113. data/lib/bio-ucsc/ce6/chainpripac1.rb +2 -2
  114. data/lib/bio-ucsc/ce6/chainpripac1link.rb +2 -2
  115. data/lib/bio-ucsc/ce6/chainself.rb +2 -2
  116. data/lib/bio-ucsc/ce6/chainselflink.rb +2 -2
  117. data/lib/bio-ucsc/ce6/db_connection.rb +5 -6
  118. data/lib/bio-ucsc/ce6/est.rb +2 -2
  119. data/lib/bio-ucsc/ce6/gap.rb +2 -2
  120. data/lib/bio-ucsc/ce6/gold.rb +2 -2
  121. data/lib/bio-ucsc/ce6/intronest.rb +2 -2
  122. data/lib/bio-ucsc/ce6/mrna.rb +2 -2
  123. data/lib/bio-ucsc/ce6/rmsk.rb +2 -2
  124. data/lib/bio-ucsc/ce6/t25mersrepeats.rb +2 -2
  125. data/lib/bio-ucsc/ci2.rb +23 -0
  126. data/lib/bio-ucsc/ci2/db_connection.rb +55 -0
  127. data/lib/bio-ucsc/danrer7.rb +24 -0
  128. data/lib/bio-ucsc/danrer7/db_connection.rb +57 -0
  129. data/lib/bio-ucsc/dm3/chainanogam1.rb +2 -2
  130. data/lib/bio-ucsc/dm3/chainanogam1link.rb +2 -2
  131. data/lib/bio-ucsc/dm3/chainapimel3.rb +2 -2
  132. data/lib/bio-ucsc/dm3/chainapimel3link.rb +2 -2
  133. data/lib/bio-ucsc/dm3/chaindp3.rb +2 -2
  134. data/lib/bio-ucsc/dm3/chaindp3link.rb +2 -2
  135. data/lib/bio-ucsc/dm3/chaindroana2.rb +2 -2
  136. data/lib/bio-ucsc/dm3/chaindroana2link.rb +2 -2
  137. data/lib/bio-ucsc/dm3/chaindroere1.rb +2 -2
  138. data/lib/bio-ucsc/dm3/chaindroere1link.rb +2 -2
  139. data/lib/bio-ucsc/dm3/chaindroper1.rb +2 -2
  140. data/lib/bio-ucsc/dm3/chaindroper1link.rb +2 -2
  141. data/lib/bio-ucsc/dm3/chaindrosec1.rb +2 -2
  142. data/lib/bio-ucsc/dm3/chaindrosec1link.rb +2 -2
  143. data/lib/bio-ucsc/dm3/chaindrosim1.rb +2 -2
  144. data/lib/bio-ucsc/dm3/chaindrosim1link.rb +2 -2
  145. data/lib/bio-ucsc/dm3/chaindroyak2.rb +2 -2
  146. data/lib/bio-ucsc/dm3/chaindroyak2link.rb +2 -2
  147. data/lib/bio-ucsc/dm3/db_connection.rb +5 -6
  148. data/lib/bio-ucsc/dm3/est.rb +2 -2
  149. data/lib/bio-ucsc/dm3/gap.rb +2 -2
  150. data/lib/bio-ucsc/dm3/gold.rb +2 -2
  151. data/lib/bio-ucsc/dm3/intronest.rb +2 -2
  152. data/lib/bio-ucsc/dm3/mrna.rb +2 -2
  153. data/lib/bio-ucsc/dm3/rmsk.rb +2 -2
  154. data/lib/bio-ucsc/dp3.rb +33 -0
  155. data/lib/bio-ucsc/dp3/chaindm3.rb +81 -0
  156. data/lib/bio-ucsc/dp3/chaindm3link.rb +81 -0
  157. data/lib/bio-ucsc/dp3/db_connection.rb +57 -0
  158. data/lib/bio-ucsc/dp3/est.rb +81 -0
  159. data/lib/bio-ucsc/dp3/gap.rb +81 -0
  160. data/lib/bio-ucsc/dp3/gold.rb +81 -0
  161. data/lib/bio-ucsc/dp3/intronest.rb +81 -0
  162. data/lib/bio-ucsc/dp3/mrna.rb +81 -0
  163. data/lib/bio-ucsc/dp3/rmsk.rb +78 -0
  164. data/lib/bio-ucsc/droana2.rb +22 -0
  165. data/lib/bio-ucsc/droana2/db_connection.rb +57 -0
  166. data/lib/bio-ucsc/droere1.rb +22 -0
  167. data/lib/bio-ucsc/droere1/db_connection.rb +57 -0
  168. data/lib/bio-ucsc/drogri1.rb +22 -0
  169. data/lib/bio-ucsc/drogri1/db_connection.rb +57 -0
  170. data/lib/bio-ucsc/dromoj2.rb +22 -0
  171. data/lib/bio-ucsc/dromoj2/db_connection.rb +57 -0
  172. data/lib/bio-ucsc/droper1.rb +22 -0
  173. data/lib/bio-ucsc/droper1/db_connection.rb +57 -0
  174. data/lib/bio-ucsc/drosec1.rb +22 -0
  175. data/lib/bio-ucsc/drosec1/db_connection.rb +57 -0
  176. data/lib/bio-ucsc/drosim1.rb +30 -0
  177. data/lib/bio-ucsc/drosim1/chaindm3.rb +81 -0
  178. data/lib/bio-ucsc/drosim1/chaindm3link.rb +81 -0
  179. data/lib/bio-ucsc/drosim1/db_connection.rb +57 -0
  180. data/lib/bio-ucsc/drosim1/est.rb +81 -0
  181. data/lib/bio-ucsc/drosim1/gap.rb +81 -0
  182. data/lib/bio-ucsc/drosim1/gold.rb +81 -0
  183. data/lib/bio-ucsc/drosim1/intronest.rb +81 -0
  184. data/lib/bio-ucsc/drosim1/mrna.rb +81 -0
  185. data/lib/bio-ucsc/drosim1/rmsk.rb +78 -0
  186. data/lib/bio-ucsc/drovir2.rb +22 -0
  187. data/lib/bio-ucsc/drovir2/db_connection.rb +57 -0
  188. data/lib/bio-ucsc/droyak2.rb +32 -0
  189. data/lib/bio-ucsc/droyak2/chaindm3.rb +81 -0
  190. data/lib/bio-ucsc/droyak2/chaindm3link.rb +81 -0
  191. data/lib/bio-ucsc/droyak2/db_connection.rb +57 -0
  192. data/lib/bio-ucsc/droyak2/est.rb +81 -0
  193. data/lib/bio-ucsc/droyak2/gap.rb +81 -0
  194. data/lib/bio-ucsc/droyak2/gold.rb +81 -0
  195. data/lib/bio-ucsc/droyak2/intronest.rb +81 -0
  196. data/lib/bio-ucsc/droyak2/mrna.rb +81 -0
  197. data/lib/bio-ucsc/droyak2/rmsk.rb +78 -0
  198. data/lib/bio-ucsc/equcab2.rb +31 -0
  199. data/lib/bio-ucsc/equcab2/db_connection.rb +57 -0
  200. data/lib/bio-ucsc/equcab2/est.rb +81 -0
  201. data/lib/bio-ucsc/equcab2/gap.rb +81 -0
  202. data/lib/bio-ucsc/equcab2/gold.rb +81 -0
  203. data/lib/bio-ucsc/equcab2/intronest.rb +81 -0
  204. data/lib/bio-ucsc/equcab2/mrna.rb +81 -0
  205. data/lib/bio-ucsc/equcab2/rmsk.rb +78 -0
  206. data/lib/bio-ucsc/felcat4.rb +23 -0
  207. data/lib/bio-ucsc/felcat4/db_connection.rb +57 -0
  208. data/lib/bio-ucsc/fr2.rb +35 -0
  209. data/lib/bio-ucsc/fr2/chaingalgal3.rb +81 -0
  210. data/lib/bio-ucsc/fr2/chaingalgal3link.rb +81 -0
  211. data/lib/bio-ucsc/fr2/chaingasacu1.rb +81 -0
  212. data/lib/bio-ucsc/fr2/chaingasacu1link.rb +81 -0
  213. data/lib/bio-ucsc/fr2/chainmm9.rb +81 -0
  214. data/lib/bio-ucsc/fr2/chainmm9link.rb +81 -0
  215. data/lib/bio-ucsc/fr2/chainorylat2.rb +81 -0
  216. data/lib/bio-ucsc/fr2/chainorylat2link.rb +81 -0
  217. data/lib/bio-ucsc/fr2/db_connection.rb +57 -0
  218. data/lib/bio-ucsc/fr2/est.rb +81 -0
  219. data/lib/bio-ucsc/fr2/gap.rb +81 -0
  220. data/lib/bio-ucsc/fr2/gold.rb +81 -0
  221. data/lib/bio-ucsc/fr2/intronest.rb +81 -0
  222. data/lib/bio-ucsc/fr2/mrna.rb +81 -0
  223. data/lib/bio-ucsc/fr2/rmsk.rb +78 -0
  224. data/lib/bio-ucsc/galgal3.rb +54 -0
  225. data/lib/bio-ucsc/galgal3/chainanocar1.rb +81 -0
  226. data/lib/bio-ucsc/galgal3/chainanocar1link.rb +81 -0
  227. data/lib/bio-ucsc/galgal3/chainbraflo1.rb +81 -0
  228. data/lib/bio-ucsc/galgal3/chainbraflo1link.rb +81 -0
  229. data/lib/bio-ucsc/galgal3/chaincavpor3.rb +81 -0
  230. data/lib/bio-ucsc/galgal3/chaincavpor3link.rb +81 -0
  231. data/lib/bio-ucsc/galgal3/chaindanrer4.rb +81 -0
  232. data/lib/bio-ucsc/galgal3/chaindanrer4link.rb +81 -0
  233. data/lib/bio-ucsc/galgal3/chainfr2.rb +81 -0
  234. data/lib/bio-ucsc/galgal3/chainfr2link.rb +81 -0
  235. data/lib/bio-ucsc/galgal3/chaingasacu1.rb +81 -0
  236. data/lib/bio-ucsc/galgal3/chaingasacu1link.rb +81 -0
  237. data/lib/bio-ucsc/galgal3/chainmm9.rb +81 -0
  238. data/lib/bio-ucsc/galgal3/chainmm9link.rb +81 -0
  239. data/lib/bio-ucsc/galgal3/chainornana1.rb +81 -0
  240. data/lib/bio-ucsc/galgal3/chainornana1link.rb +81 -0
  241. data/lib/bio-ucsc/galgal3/chainpetmar1.rb +81 -0
  242. data/lib/bio-ucsc/galgal3/chainpetmar1link.rb +81 -0
  243. data/lib/bio-ucsc/galgal3/chainrn4.rb +81 -0
  244. data/lib/bio-ucsc/galgal3/chainrn4link.rb +81 -0
  245. data/lib/bio-ucsc/galgal3/chaintaegut1.rb +81 -0
  246. data/lib/bio-ucsc/galgal3/chaintaegut1link.rb +81 -0
  247. data/lib/bio-ucsc/galgal3/chainxentro2.rb +81 -0
  248. data/lib/bio-ucsc/galgal3/chainxentro2link.rb +81 -0
  249. data/lib/bio-ucsc/galgal3/db_connection.rb +57 -0
  250. data/lib/bio-ucsc/galgal3/est.rb +81 -0
  251. data/lib/bio-ucsc/galgal3/gap.rb +81 -0
  252. data/lib/bio-ucsc/galgal3/gold.rb +81 -0
  253. data/lib/bio-ucsc/galgal3/intronest.rb +81 -0
  254. data/lib/bio-ucsc/galgal3/mrna.rb +81 -0
  255. data/lib/bio-ucsc/galgal3/rmsk.rb +78 -0
  256. data/lib/bio-ucsc/gasacu1.rb +39 -0
  257. data/lib/bio-ucsc/gasacu1/chainanocar1.rb +81 -0
  258. data/lib/bio-ucsc/gasacu1/chainanocar1link.rb +81 -0
  259. data/lib/bio-ucsc/gasacu1/chainfr2.rb +81 -0
  260. data/lib/bio-ucsc/gasacu1/chainfr2link.rb +81 -0
  261. data/lib/bio-ucsc/gasacu1/chaingalgal3.rb +81 -0
  262. data/lib/bio-ucsc/gasacu1/chaingalgal3link.rb +81 -0
  263. data/lib/bio-ucsc/gasacu1/chainmm9.rb +81 -0
  264. data/lib/bio-ucsc/gasacu1/chainmm9link.rb +81 -0
  265. data/lib/bio-ucsc/gasacu1/chainorylat2.rb +81 -0
  266. data/lib/bio-ucsc/gasacu1/chainorylat2link.rb +81 -0
  267. data/lib/bio-ucsc/gasacu1/db_connection.rb +57 -0
  268. data/lib/bio-ucsc/gasacu1/est.rb +81 -0
  269. data/lib/bio-ucsc/gasacu1/intronest.rb +81 -0
  270. data/lib/bio-ucsc/gasacu1/mrna.rb +81 -0
  271. data/lib/bio-ucsc/gasacu1/rmsk.rb +78 -0
  272. data/lib/bio-ucsc/go/db_connection.rb +5 -6
  273. data/lib/bio-ucsc/hg18/chainanocar1.rb +2 -2
  274. data/lib/bio-ucsc/hg18/chainbostau4.rb +2 -2
  275. data/lib/bio-ucsc/hg18/chainbraflo1.rb +2 -2
  276. data/lib/bio-ucsc/hg18/chaincaljac1.rb +2 -2
  277. data/lib/bio-ucsc/hg18/chaincanfam2.rb +2 -2
  278. data/lib/bio-ucsc/hg18/chaincavpor3.rb +2 -2
  279. data/lib/bio-ucsc/hg18/chaindanrer5.rb +2 -2
  280. data/lib/bio-ucsc/hg18/chainequcab1.rb +2 -2
  281. data/lib/bio-ucsc/hg18/chainfelcat3.rb +2 -2
  282. data/lib/bio-ucsc/hg18/chainfr2.rb +2 -2
  283. data/lib/bio-ucsc/hg18/chaingalgal3.rb +2 -2
  284. data/lib/bio-ucsc/hg18/chaingasacu1.rb +2 -2
  285. data/lib/bio-ucsc/hg18/chainmm9.rb +2 -2
  286. data/lib/bio-ucsc/hg18/chainmondom4.rb +2 -2
  287. data/lib/bio-ucsc/hg18/chainornana1.rb +2 -2
  288. data/lib/bio-ucsc/hg18/chainorylat2.rb +2 -2
  289. data/lib/bio-ucsc/hg18/chainpantro2.rb +2 -2
  290. data/lib/bio-ucsc/hg18/chainpetmar1.rb +2 -2
  291. data/lib/bio-ucsc/hg18/chainponabe2.rb +2 -2
  292. data/lib/bio-ucsc/hg18/chainrhemac2.rb +2 -2
  293. data/lib/bio-ucsc/hg18/chainrn4.rb +2 -2
  294. data/lib/bio-ucsc/hg18/chainself.rb +2 -2
  295. data/lib/bio-ucsc/hg18/chainstrpur2.rb +2 -2
  296. data/lib/bio-ucsc/hg18/chaintaegut1.rb +2 -2
  297. data/lib/bio-ucsc/hg18/chaintetnig2.rb +2 -2
  298. data/lib/bio-ucsc/hg18/chainxentro2.rb +2 -2
  299. data/lib/bio-ucsc/hg18/db_connection.rb +5 -7
  300. data/lib/bio-ucsc/hg18/gap.rb +2 -2
  301. data/lib/bio-ucsc/hg18/gold.rb +2 -2
  302. data/lib/bio-ucsc/hg18/intronest.rb +2 -2
  303. data/lib/bio-ucsc/hg18/rmsk.rb +2 -2
  304. data/lib/bio-ucsc/hg18/rmskrm327.rb +2 -2
  305. data/lib/bio-ucsc/hgfixed/db_connection.rb +5 -6
  306. data/lib/bio-ucsc/loxafr3.rb +20 -0
  307. data/lib/bio-ucsc/loxafr3/db_connection.rb +57 -0
  308. data/lib/bio-ucsc/mm9/chainanocar1.rb +2 -2
  309. data/lib/bio-ucsc/mm9/chainanocar1link.rb +2 -2
  310. data/lib/bio-ucsc/mm9/chainbostau4.rb +2 -2
  311. data/lib/bio-ucsc/mm9/chainbostau4link.rb +3 -3
  312. data/lib/bio-ucsc/mm9/chainbraflo1.rb +2 -2
  313. data/lib/bio-ucsc/mm9/chainbraflo1link.rb +2 -2
  314. data/lib/bio-ucsc/mm9/chaincanfam2.rb +2 -2
  315. data/lib/bio-ucsc/mm9/chaincanfam2link.rb +2 -2
  316. data/lib/bio-ucsc/mm9/chaincavpor3.rb +2 -2
  317. data/lib/bio-ucsc/mm9/chaincavpor3link.rb +2 -2
  318. data/lib/bio-ucsc/mm9/chainfr2.rb +2 -2
  319. data/lib/bio-ucsc/mm9/chainfr2link.rb +2 -2
  320. data/lib/bio-ucsc/mm9/chaingalgal3.rb +2 -2
  321. data/lib/bio-ucsc/mm9/chaingalgal3link.rb +2 -2
  322. data/lib/bio-ucsc/mm9/chaingasacu1.rb +2 -2
  323. data/lib/bio-ucsc/mm9/chaingasacu1link.rb +2 -2
  324. data/lib/bio-ucsc/mm9/chainornana1.rb +2 -2
  325. data/lib/bio-ucsc/mm9/chainornana1link.rb +2 -2
  326. data/lib/bio-ucsc/mm9/chainorylat2.rb +2 -2
  327. data/lib/bio-ucsc/mm9/chainorylat2link.rb +2 -2
  328. data/lib/bio-ucsc/mm9/chainpantro2.rb +2 -2
  329. data/lib/bio-ucsc/mm9/chainpantro2link.rb +2 -2
  330. data/lib/bio-ucsc/mm9/chainpetmar1.rb +2 -2
  331. data/lib/bio-ucsc/mm9/chainpetmar1link.rb +2 -2
  332. data/lib/bio-ucsc/mm9/chainponabe2.rb +2 -2
  333. data/lib/bio-ucsc/mm9/chainponabe2link.rb +2 -2
  334. data/lib/bio-ucsc/mm9/chainrhemac2.rb +2 -2
  335. data/lib/bio-ucsc/mm9/chainrhemac2link.rb +2 -2
  336. data/lib/bio-ucsc/mm9/chainrn4.rb +2 -2
  337. data/lib/bio-ucsc/mm9/chainrn4link.rb +2 -2
  338. data/lib/bio-ucsc/mm9/chainxentro2.rb +2 -2
  339. data/lib/bio-ucsc/mm9/chainxentro2link.rb +2 -2
  340. data/lib/bio-ucsc/mm9/db_connection.rb +6 -7
  341. data/lib/bio-ucsc/mm9/est.rb +2 -2
  342. data/lib/bio-ucsc/mm9/gap.rb +2 -2
  343. data/lib/bio-ucsc/mm9/gold.rb +2 -2
  344. data/lib/bio-ucsc/mm9/intronest.rb +2 -2
  345. data/lib/bio-ucsc/mm9/mrna.rb +2 -2
  346. data/lib/bio-ucsc/mm9/rmsk.rb +2 -2
  347. data/lib/bio-ucsc/mondom5.rb +21 -0
  348. data/lib/bio-ucsc/mondom5/db_connection.rb +57 -0
  349. data/lib/bio-ucsc/ornana1.rb +20 -0
  350. data/lib/bio-ucsc/ornana1/db_connection.rb +57 -0
  351. data/lib/bio-ucsc/orycun2.rb +24 -0
  352. data/lib/bio-ucsc/orycun2/db_connection.rb +57 -0
  353. data/lib/bio-ucsc/orylat2.rb +24 -0
  354. data/lib/bio-ucsc/orylat2/db_connection.rb +55 -0
  355. data/lib/bio-ucsc/oviari1.rb +24 -0
  356. data/lib/bio-ucsc/oviari1/db_connection.rb +57 -0
  357. data/lib/bio-ucsc/pantro3.rb +24 -0
  358. data/lib/bio-ucsc/pantro3/db_connection.rb +55 -0
  359. data/lib/bio-ucsc/petmar1.rb +22 -0
  360. data/lib/bio-ucsc/petmar1/db_connection.rb +57 -0
  361. data/lib/bio-ucsc/ponabe2.rb +36 -0
  362. data/lib/bio-ucsc/ponabe2/chainmm9.rb +81 -0
  363. data/lib/bio-ucsc/ponabe2/chainmm9link.rb +81 -0
  364. data/lib/bio-ucsc/ponabe2/chainornana1.rb +81 -0
  365. data/lib/bio-ucsc/ponabe2/chainornana1link.rb +81 -0
  366. data/lib/bio-ucsc/ponabe2/chainrhemac2.rb +81 -0
  367. data/lib/bio-ucsc/ponabe2/chainrhemac2link.rb +81 -0
  368. data/lib/bio-ucsc/ponabe2/db_connection.rb +55 -0
  369. data/lib/bio-ucsc/ponabe2/est.rb +81 -0
  370. data/lib/bio-ucsc/ponabe2/gap.rb +81 -0
  371. data/lib/bio-ucsc/ponabe2/gold.rb +81 -0
  372. data/lib/bio-ucsc/ponabe2/intronest.rb +81 -0
  373. data/lib/bio-ucsc/ponabe2/mrna.rb +81 -0
  374. data/lib/bio-ucsc/ponabe2/rmsk.rb +78 -0
  375. data/lib/bio-ucsc/pripac1.rb +33 -0
  376. data/lib/bio-ucsc/pripac1/chaincaepb1.rb +81 -0
  377. data/lib/bio-ucsc/pripac1/chaincaepb1link.rb +81 -0
  378. data/lib/bio-ucsc/pripac1/chaincaerem2.rb +81 -0
  379. data/lib/bio-ucsc/pripac1/chaincaerem2link.rb +81 -0
  380. data/lib/bio-ucsc/pripac1/chaincb3.rb +81 -0
  381. data/lib/bio-ucsc/pripac1/chaincb3link.rb +81 -0
  382. data/lib/bio-ucsc/pripac1/chaince6.rb +81 -0
  383. data/lib/bio-ucsc/pripac1/chaince6link.rb +81 -0
  384. data/lib/bio-ucsc/pripac1/db_connection.rb +57 -0
  385. data/lib/bio-ucsc/pripac1/gap.rb +81 -0
  386. data/lib/bio-ucsc/pripac1/gold.rb +81 -0
  387. data/lib/bio-ucsc/pripac1/rmsk.rb +78 -0
  388. data/lib/bio-ucsc/proteome/db_connection.rb +5 -7
  389. data/lib/bio-ucsc/rhemac2.rb +32 -0
  390. data/lib/bio-ucsc/rhemac2/chainmm9.rb +81 -0
  391. data/lib/bio-ucsc/rhemac2/chainmm9link.rb +81 -0
  392. data/lib/bio-ucsc/rhemac2/chainpantro2.rb +81 -0
  393. data/lib/bio-ucsc/rhemac2/chainpantro2link.rb +81 -0
  394. data/lib/bio-ucsc/rhemac2/chainponabe2.rb +81 -0
  395. data/lib/bio-ucsc/rhemac2/chainponabe2link.rb +81 -0
  396. data/lib/bio-ucsc/rhemac2/chainrn4.rb +81 -0
  397. data/lib/bio-ucsc/rhemac2/chainrn4link.rb +81 -0
  398. data/lib/bio-ucsc/rhemac2/db_connection.rb +55 -0
  399. data/lib/bio-ucsc/rn4.rb +52 -0
  400. data/lib/bio-ucsc/rn4/chainbostau3.rb +79 -0
  401. data/lib/bio-ucsc/rn4/chainbostau3link.rb +79 -0
  402. data/lib/bio-ucsc/rn4/chaincanfam2.rb +82 -0
  403. data/lib/bio-ucsc/rn4/chaincanfam2link.rb +82 -0
  404. data/lib/bio-ucsc/rn4/chaincavpor3.rb +81 -0
  405. data/lib/bio-ucsc/rn4/chaincavpor3link.rb +81 -0
  406. data/lib/bio-ucsc/rn4/chaindanrer4.rb +81 -0
  407. data/lib/bio-ucsc/rn4/chaindanrer4link.rb +81 -0
  408. data/lib/bio-ucsc/rn4/chainequcab1.rb +81 -0
  409. data/lib/bio-ucsc/rn4/chainequcab1link.rb +81 -0
  410. data/lib/bio-ucsc/rn4/chaingalgal3.rb +81 -0
  411. data/lib/bio-ucsc/rn4/chaingalgal3link.rb +81 -0
  412. data/lib/bio-ucsc/rn4/chainmm9.rb +81 -0
  413. data/lib/bio-ucsc/rn4/chainmm9link.rb +81 -0
  414. data/lib/bio-ucsc/rn4/chainmondom4.rb +81 -0
  415. data/lib/bio-ucsc/rn4/chainmondom4link.rb +81 -0
  416. data/lib/bio-ucsc/rn4/chainpantro2.rb +81 -0
  417. data/lib/bio-ucsc/rn4/chainpantro2link.rb +82 -0
  418. data/lib/bio-ucsc/rn4/chainrhemac2.rb +81 -0
  419. data/lib/bio-ucsc/rn4/chainrhemac2link.rb +81 -0
  420. data/lib/bio-ucsc/rn4/chainxentro2.rb +81 -0
  421. data/lib/bio-ucsc/rn4/chainxentro2link.rb +81 -0
  422. data/lib/bio-ucsc/rn4/db_connection.rb +55 -0
  423. data/lib/bio-ucsc/rn4/est.rb +81 -0
  424. data/lib/bio-ucsc/rn4/gap.rb +81 -0
  425. data/lib/bio-ucsc/rn4/gold.rb +81 -0
  426. data/lib/bio-ucsc/rn4/intronest.rb +81 -0
  427. data/lib/bio-ucsc/rn4/mrna.rb +81 -0
  428. data/lib/bio-ucsc/rn4/rmsk.rb +78 -0
  429. data/lib/bio-ucsc/saccer2.rb +33 -0
  430. data/lib/bio-ucsc/saccer2/db_connection.rb +55 -0
  431. data/lib/bio-ucsc/saccer2/est.rb +83 -0
  432. data/lib/bio-ucsc/saccer2/gap.rb +83 -0
  433. data/lib/bio-ucsc/saccer2/gold.rb +83 -0
  434. data/lib/bio-ucsc/saccer2/intronest.rb +83 -0
  435. data/lib/bio-ucsc/saccer2/mrna.rb +83 -0
  436. data/lib/bio-ucsc/saccer2/t2micron_est.rb +57 -0
  437. data/lib/bio-ucsc/saccer2/t2micron_gap.rb +57 -0
  438. data/lib/bio-ucsc/saccer2/t2micron_gold.rb +58 -0
  439. data/lib/bio-ucsc/saccer2/t2micron_intronEst.rb +57 -0
  440. data/lib/bio-ucsc/saccer2/t2micron_mrna.rb +57 -0
  441. data/lib/bio-ucsc/strpur2.rb +32 -0
  442. data/lib/bio-ucsc/strpur2/chaingalgal3.rb +81 -0
  443. data/lib/bio-ucsc/strpur2/chaingalgal3link.rb +81 -0
  444. data/lib/bio-ucsc/strpur2/chainhg18.rb +81 -0
  445. data/lib/bio-ucsc/strpur2/chainhg18link.rb +81 -0
  446. data/lib/bio-ucsc/strpur2/chainmm9.rb +81 -0
  447. data/lib/bio-ucsc/strpur2/chainmm9link.rb +81 -0
  448. data/lib/bio-ucsc/strpur2/chainpetmar1.rb +81 -0
  449. data/lib/bio-ucsc/strpur2/chainpetmar1link.rb +81 -0
  450. data/lib/bio-ucsc/strpur2/db_connection.rb +57 -0
  451. data/lib/bio-ucsc/strpur2/gap.rb +81 -0
  452. data/lib/bio-ucsc/strpur2/gold.rb +81 -0
  453. data/lib/bio-ucsc/susscr2.rb +26 -0
  454. data/lib/bio-ucsc/susscr2/db_connection.rb +57 -0
  455. data/lib/bio-ucsc/susscr2/est.rb +81 -0
  456. data/lib/bio-ucsc/susscr2/intronest.rb +81 -0
  457. data/lib/bio-ucsc/susscr2/mrna.rb +81 -0
  458. data/lib/bio-ucsc/table_class_detector.rb +18 -22
  459. data/lib/bio-ucsc/taegut1.rb +33 -0
  460. data/lib/bio-ucsc/taegut1/chaingalgal3.rb +81 -0
  461. data/lib/bio-ucsc/taegut1/chaingalgal3link.rb +81 -0
  462. data/lib/bio-ucsc/taegut1/db_connection.rb +57 -0
  463. data/lib/bio-ucsc/taegut1/est.rb +81 -0
  464. data/lib/bio-ucsc/taegut1/gap.rb +81 -0
  465. data/lib/bio-ucsc/taegut1/gold.rb +81 -0
  466. data/lib/bio-ucsc/taegut1/intronest.rb +81 -0
  467. data/lib/bio-ucsc/taegut1/mrna.rb +81 -0
  468. data/lib/bio-ucsc/taegut1/rmsk.rb +78 -0
  469. data/lib/bio-ucsc/tetnig2.rb +25 -0
  470. data/lib/bio-ucsc/tetnig2/db_connection.rb +57 -0
  471. data/lib/bio-ucsc/tetnig2/mrna.rb +81 -0
  472. data/lib/bio-ucsc/uniprot/db_connection.rb +5 -7
  473. data/lib/bio-ucsc/visigene/db_connection.rb +5 -6
  474. data/lib/bio-ucsc/xentro2.rb +30 -0
  475. data/lib/bio-ucsc/xentro2/chaingalgal3.rb +81 -0
  476. data/lib/bio-ucsc/xentro2/chaingalgal3link.rb +81 -0
  477. data/lib/bio-ucsc/xentro2/db_connection.rb +57 -0
  478. data/lib/bio-ucsc/xentro2/est.rb +81 -0
  479. data/lib/bio-ucsc/xentro2/gap.rb +81 -0
  480. data/lib/bio-ucsc/xentro2/gold.rb +81 -0
  481. data/lib/bio-ucsc/xentro2/intronest.rb +81 -0
  482. data/lib/bio-ucsc/xentro2/mrna.rb +81 -0
  483. data/lib/bio-ucsc/xentro2/rmsk.rb +78 -0
  484. data/samples/hg19-2bit-retrieve.rb +5 -2
  485. data/spec/ailmel1_spec.rb +770 -0
  486. data/spec/anocar2_spec.rb +750 -0
  487. data/spec/anogam1_spec.rb +568 -0
  488. data/spec/apimel2_spec.rb +542 -0
  489. data/spec/aplcal1_spec.rb +530 -0
  490. data/spec/bostau4_spec.rb +920 -0
  491. data/spec/braflo1_spec.rb +660 -0
  492. data/spec/caejap1_spec.rb +524 -0
  493. data/spec/caepb2_spec.rb +515 -0
  494. data/spec/caerem3_spec.rb +524 -0
  495. data/spec/caljac3_spec.rb +860 -0
  496. data/spec/canfam2_spec.rb +1145 -0
  497. data/spec/cavpor3_spec.rb +880 -0
  498. data/spec/cb3_spec.rb +634 -0
  499. data/spec/ci2_spec.rb +520 -0
  500. data/spec/danrer7_spec.rb +810 -0
  501. data/spec/dp3_spec.rb +617 -0
  502. data/spec/droana2_spec.rb +500 -0
  503. data/spec/droere1_spec.rb +510 -0
  504. data/spec/drogri1_spec.rb +470 -0
  505. data/spec/dromoj2_spec.rb +510 -0
  506. data/spec/droper1_spec.rb +470 -0
  507. data/spec/drosec1_spec.rb +470 -0
  508. data/spec/drosim1_spec.rb +588 -0
  509. data/spec/drovir2_spec.rb +540 -0
  510. data/spec/droyak2_spec.rb +558 -0
  511. data/spec/equcab2_spec.rb +936 -0
  512. data/spec/felcat4_spec.rb +770 -0
  513. data/spec/fr2_spec.rb +835 -0
  514. data/spec/galgal3_spec.rb +1351 -0
  515. data/spec/gasacu1_spec.rb +924 -0
  516. data/spec/loxafr3_spec.rb +550 -0
  517. data/spec/mondom5_spec.rb +1230 -0
  518. data/spec/ornana1_spec.rb +980 -0
  519. data/spec/orycun2_spec.rb +770 -0
  520. data/spec/orylat2_spec.rb +930 -0
  521. data/spec/oviari1_spec.rb +670 -0
  522. data/spec/pantro3_spec.rb +810 -0
  523. data/spec/petmar1_spec.rb +770 -0
  524. data/spec/ponabe2_spec.rb +962 -0
  525. data/spec/pripac1_spec.rb +621 -0
  526. data/spec/rhemac2_spec.rb +958 -0
  527. data/spec/rn4_spec.rb +2038 -0
  528. data/spec/saccer2_spec.rb +925 -0
  529. data/spec/strpur2_spec.rb +600 -0
  530. data/spec/susscr2_spec.rb +623 -0
  531. data/spec/taegut1_spec.rb +768 -0
  532. data/spec/tetnig2_spec.rb +721 -0
  533. data/spec/xentro2_spec.rb +900 -0
  534. metadata +477 -23
@@ -0,0 +1,962 @@
1
+ require "bio-ucsc"
2
+ require "pp"
3
+
4
+ describe "Bio::Ucsc::PonAbe2" do
5
+
6
+ before(:all) do
7
+ Bio::Ucsc::PonAbe2::DBConnection.connect
8
+ end
9
+
10
+ describe "Bio::Ucsc::PonAbe2::All_est" do
11
+ context ".first" do
12
+ it 'returns the first records' do
13
+ result = Bio::Ucsc::PonAbe2::All_est.first
14
+ pp result
15
+ result.should be_true
16
+ end
17
+ end
18
+ end
19
+
20
+ describe "Bio::Ucsc::PonAbe2::All_mrna" do
21
+ context ".first" do
22
+ it 'returns the first records' do
23
+ result = Bio::Ucsc::PonAbe2::All_mrna.first
24
+ pp result
25
+ result.should be_true
26
+ end
27
+ end
28
+ end
29
+
30
+ describe "Bio::Ucsc::PonAbe2::Author" do
31
+ context ".first" do
32
+ it 'returns the first records' do
33
+ result = Bio::Ucsc::PonAbe2::Author.first
34
+ pp result
35
+ result.should be_true
36
+ end
37
+ end
38
+ end
39
+
40
+ describe "Bio::Ucsc::PonAbe2::Cds" do
41
+ context ".first" do
42
+ it 'returns the first records' do
43
+ result = Bio::Ucsc::PonAbe2::Cds.first
44
+ pp result
45
+ result.should be_true
46
+ end
47
+ end
48
+ end
49
+
50
+ describe "Bio::Ucsc::PonAbe2::Cell" do
51
+ context ".first" do
52
+ it 'returns the first records' do
53
+ result = Bio::Ucsc::PonAbe2::Cell.first
54
+ pp result
55
+ result.should be_true
56
+ end
57
+ end
58
+ end
59
+
60
+ describe "Bio::Ucsc::PonAbe2::ChainCalJac3" do
61
+ context ".first" do
62
+ it 'returns the first records' do
63
+ result = Bio::Ucsc::PonAbe2::ChainCalJac3.first
64
+ pp result
65
+ result.should be_true
66
+ end
67
+ end
68
+ end
69
+
70
+ describe "Bio::Ucsc::PonAbe2::ChainCalJac3Link" do
71
+ context ".first" do
72
+ it 'returns the first records' do
73
+ result = Bio::Ucsc::PonAbe2::ChainCalJac3Link.first
74
+ pp result
75
+ result.should be_true
76
+ end
77
+ end
78
+ end
79
+
80
+ describe "Bio::Ucsc::PonAbe2::ChainHg19" do
81
+ context ".first" do
82
+ it 'returns the first records' do
83
+ result = Bio::Ucsc::PonAbe2::ChainHg19.first
84
+ pp result
85
+ result.should be_true
86
+ end
87
+ end
88
+ end
89
+
90
+ describe "Bio::Ucsc::PonAbe2::ChainHg19Link" do
91
+ context ".first" do
92
+ it 'returns the first records' do
93
+ result = Bio::Ucsc::PonAbe2::ChainHg19Link.first
94
+ pp result
95
+ result.should be_true
96
+ end
97
+ end
98
+ end
99
+
100
+ describe "Bio::Ucsc::PonAbe2::ChainMm9" do
101
+ context ".find_by_interval" do
102
+ it 'returns the first records' do
103
+ gi = Bio::GenomicInterval.parse("chrX:1-10,000,000")
104
+ result = Bio::Ucsc::PonAbe2::ChainMm9.find_by_interval gi
105
+ pp result
106
+ result.should be_true
107
+ end
108
+ end
109
+ end
110
+
111
+ describe "Bio::Ucsc::PonAbe2::ChainMm9Link" do
112
+ context ".find_by_interval" do
113
+ it 'returns the first records' do
114
+ gi = Bio::GenomicInterval.parse("chrX:1-10,000,000")
115
+ result = Bio::Ucsc::PonAbe2::ChainMm9Link.find_by_interval gi
116
+ pp result
117
+ result.should be_true
118
+ end
119
+ end
120
+ end
121
+
122
+ describe "Bio::Ucsc::PonAbe2::ChainMonDom5" do
123
+ context ".first" do
124
+ it 'returns the first records' do
125
+ result = Bio::Ucsc::PonAbe2::ChainMonDom5.first
126
+ pp result
127
+ result.should be_true
128
+ end
129
+ end
130
+ end
131
+
132
+ describe "Bio::Ucsc::PonAbe2::ChainMonDom5Link" do
133
+ context ".first" do
134
+ it 'returns the first records' do
135
+ result = Bio::Ucsc::PonAbe2::ChainMonDom5Link.first
136
+ pp result
137
+ result.should be_true
138
+ end
139
+ end
140
+ end
141
+
142
+ describe "Bio::Ucsc::PonAbe2::ChainOrnAna1" do
143
+ context ".find_by_interval" do
144
+ it 'returns the first records' do
145
+ gi = Bio::GenomicInterval.parse("chrX:1-10,000,000")
146
+ result = Bio::Ucsc::PonAbe2::ChainOrnAna1.find_by_interval gi
147
+ pp result
148
+ result.should be_true
149
+ end
150
+ end
151
+ end
152
+
153
+ describe "Bio::Ucsc::PonAbe2::ChainOrnAna1Link" do
154
+ context ".find_by_interval" do
155
+ it 'returns the first records' do
156
+ gi = Bio::GenomicInterval.parse("chrX:1-10,000,000")
157
+ result = Bio::Ucsc::PonAbe2::ChainOrnAna1Link.find_by_interval gi
158
+ pp result
159
+ result.should be_true
160
+ end
161
+ end
162
+ end
163
+
164
+ describe "Bio::Ucsc::PonAbe2::ChainPanTro3" do
165
+ context ".first" do
166
+ it 'returns the first records' do
167
+ result = Bio::Ucsc::PonAbe2::ChainPanTro3.first
168
+ pp result
169
+ result.should be_true
170
+ end
171
+ end
172
+ end
173
+
174
+ describe "Bio::Ucsc::PonAbe2::ChainPanTro3Link" do
175
+ context ".first" do
176
+ it 'returns the first records' do
177
+ result = Bio::Ucsc::PonAbe2::ChainPanTro3Link.first
178
+ pp result
179
+ result.should be_true
180
+ end
181
+ end
182
+ end
183
+
184
+ describe "Bio::Ucsc::PonAbe2::ChainRheMac2" do
185
+ context ".find_by_interval" do
186
+ it 'returns the first records' do
187
+ gi = Bio::GenomicInterval.parse("chrX:1-10,000,000")
188
+ result = Bio::Ucsc::PonAbe2::ChainRheMac2.find_by_interval gi
189
+ pp result
190
+ result.should be_true
191
+ end
192
+ end
193
+ end
194
+
195
+ describe "Bio::Ucsc::PonAbe2::ChainRheMac2Link" do
196
+ context ".find_by_interval" do
197
+ it 'returns the first records' do
198
+ gi = Bio::GenomicInterval.parse("chrX:1-10,000,000")
199
+ result = Bio::Ucsc::PonAbe2::ChainRheMac2Link.find_by_interval gi
200
+ pp result
201
+ result.should be_true
202
+ end
203
+ end
204
+ end
205
+
206
+ describe "Bio::Ucsc::PonAbe2::ChromInfo" do
207
+ context ".first" do
208
+ it 'returns the first records' do
209
+ result = Bio::Ucsc::PonAbe2::ChromInfo.first
210
+ pp result
211
+ result.should be_true
212
+ end
213
+ end
214
+ end
215
+
216
+ describe "Bio::Ucsc::PonAbe2::Description" do
217
+ context ".first" do
218
+ it 'returns the first records' do
219
+ result = Bio::Ucsc::PonAbe2::Description.first
220
+ pp result
221
+ result.should be_true
222
+ end
223
+ end
224
+ end
225
+
226
+ describe "Bio::Ucsc::PonAbe2::Development" do
227
+ context ".first" do
228
+ it 'returns the first records' do
229
+ result = Bio::Ucsc::PonAbe2::Development.first
230
+ pp result
231
+ result.should be_true
232
+ end
233
+ end
234
+ end
235
+
236
+ describe "Bio::Ucsc::PonAbe2::EnsGene" do
237
+ context ".first" do
238
+ it 'returns the first records' do
239
+ result = Bio::Ucsc::PonAbe2::EnsGene.first
240
+ pp result
241
+ result.should be_true
242
+ end
243
+ end
244
+ end
245
+
246
+ describe "Bio::Ucsc::PonAbe2::EnsGtp" do
247
+ context ".first" do
248
+ it 'returns the first records' do
249
+ result = Bio::Ucsc::PonAbe2::EnsGtp.first
250
+ pp result
251
+ result.should be_true
252
+ end
253
+ end
254
+ end
255
+
256
+ describe "Bio::Ucsc::PonAbe2::EnsPep" do
257
+ context ".first" do
258
+ it 'returns the first records' do
259
+ result = Bio::Ucsc::PonAbe2::EnsPep.first
260
+ pp result
261
+ result.should be_true
262
+ end
263
+ end
264
+ end
265
+
266
+ describe "Bio::Ucsc::PonAbe2::Est" do
267
+ context ".find_by_interval" do
268
+ it 'returns the first records' do
269
+ gi = Bio::GenomicInterval.parse("chrX:1-10,000,000")
270
+ result = Bio::Ucsc::PonAbe2::Est.find_by_interval gi
271
+ pp result
272
+ result.should be_true
273
+ end
274
+ end
275
+ end
276
+
277
+ describe "Bio::Ucsc::PonAbe2::EstOrientInfo" do
278
+ context ".first" do
279
+ it 'returns the first records' do
280
+ result = Bio::Ucsc::PonAbe2::EstOrientInfo.first
281
+ pp result
282
+ result.should be_true
283
+ end
284
+ end
285
+ end
286
+
287
+ describe "Bio::Ucsc::PonAbe2::ExtFile" do
288
+ context ".first" do
289
+ it 'returns the first records' do
290
+ result = Bio::Ucsc::PonAbe2::ExtFile.first
291
+ pp result
292
+ result.should be_true
293
+ end
294
+ end
295
+ end
296
+
297
+ describe "Bio::Ucsc::PonAbe2::Gap" do
298
+ context ".find_by_interval" do
299
+ it 'returns the first records' do
300
+ gi = Bio::GenomicInterval.parse("chrX:1-10,000,000")
301
+ result = Bio::Ucsc::PonAbe2::Gap.find_by_interval gi
302
+ pp result
303
+ result.should be_true
304
+ end
305
+ end
306
+ end
307
+
308
+ describe "Bio::Ucsc::PonAbe2::GbCdnaInfo" do
309
+ context ".first" do
310
+ it 'returns the first records' do
311
+ result = Bio::Ucsc::PonAbe2::GbCdnaInfo.first
312
+ pp result
313
+ result.should be_true
314
+ end
315
+ end
316
+ end
317
+
318
+ describe "Bio::Ucsc::PonAbe2::GbExtFile" do
319
+ context ".first" do
320
+ it 'returns the first records' do
321
+ result = Bio::Ucsc::PonAbe2::GbExtFile.first
322
+ pp result
323
+ result.should be_true
324
+ end
325
+ end
326
+ end
327
+
328
+ describe "Bio::Ucsc::PonAbe2::GbLoaded" do
329
+ context ".first" do
330
+ it 'returns the first records' do
331
+ result = Bio::Ucsc::PonAbe2::GbLoaded.first
332
+ pp result
333
+ result.should be_true
334
+ end
335
+ end
336
+ end
337
+
338
+ describe "Bio::Ucsc::PonAbe2::GbMiscDiff" do
339
+ context ".first" do
340
+ it 'returns the first records' do
341
+ result = Bio::Ucsc::PonAbe2::GbMiscDiff.first
342
+ pp result
343
+ result.should be_true
344
+ end
345
+ end
346
+ end
347
+
348
+ describe "Bio::Ucsc::PonAbe2::GbSeq" do
349
+ context ".first" do
350
+ it 'returns the first records' do
351
+ result = Bio::Ucsc::PonAbe2::GbSeq.first
352
+ pp result
353
+ result.should be_true
354
+ end
355
+ end
356
+ end
357
+
358
+ describe "Bio::Ucsc::PonAbe2::GbStatus" do
359
+ context ".first" do
360
+ it 'returns the first records' do
361
+ result = Bio::Ucsc::PonAbe2::GbStatus.first
362
+ pp result
363
+ result.should be_true
364
+ end
365
+ end
366
+ end
367
+
368
+ describe "Bio::Ucsc::PonAbe2::GbWarn" do
369
+ context ".first" do
370
+ it 'returns the first records' do
371
+ result = Bio::Ucsc::PonAbe2::GbWarn.first
372
+ pp result
373
+ result.should be_true
374
+ end
375
+ end
376
+ end
377
+
378
+ describe "Bio::Ucsc::PonAbe2::Gc5Base" do
379
+ context ".first" do
380
+ it 'returns the first records' do
381
+ result = Bio::Ucsc::PonAbe2::Gc5Base.first
382
+ pp result
383
+ result.should be_true
384
+ end
385
+ end
386
+ end
387
+
388
+ describe "Bio::Ucsc::PonAbe2::GeneName" do
389
+ context ".first" do
390
+ it 'returns the first records' do
391
+ result = Bio::Ucsc::PonAbe2::GeneName.first
392
+ pp result
393
+ result.should be_true
394
+ end
395
+ end
396
+ end
397
+
398
+ describe "Bio::Ucsc::PonAbe2::Genscan" do
399
+ context ".first" do
400
+ it 'returns the first records' do
401
+ result = Bio::Ucsc::PonAbe2::Genscan.first
402
+ pp result
403
+ result.should be_true
404
+ end
405
+ end
406
+ end
407
+
408
+ describe "Bio::Ucsc::PonAbe2::GenscanPep" do
409
+ context ".first" do
410
+ it 'returns the first records' do
411
+ result = Bio::Ucsc::PonAbe2::GenscanPep.first
412
+ pp result
413
+ result.should be_true
414
+ end
415
+ end
416
+ end
417
+
418
+ describe "Bio::Ucsc::PonAbe2::Gold" do
419
+ context ".find_by_interval" do
420
+ it 'returns the first records' do
421
+ gi = Bio::GenomicInterval.parse("chrX:1-10,000,000")
422
+ result = Bio::Ucsc::PonAbe2::Gold.find_by_interval gi
423
+ pp result
424
+ result.should be_true
425
+ end
426
+ end
427
+ end
428
+
429
+ describe "Bio::Ucsc::PonAbe2::Grp" do
430
+ context ".first" do
431
+ it 'returns the first records' do
432
+ result = Bio::Ucsc::PonAbe2::Grp.first
433
+ pp result
434
+ result.should be_true
435
+ end
436
+ end
437
+ end
438
+
439
+ describe "Bio::Ucsc::PonAbe2::HgFindSpec" do
440
+ context ".first" do
441
+ it 'returns the first records' do
442
+ result = Bio::Ucsc::PonAbe2::HgFindSpec.first
443
+ pp result
444
+ result.should be_true
445
+ end
446
+ end
447
+ end
448
+
449
+ describe "Bio::Ucsc::PonAbe2::History" do
450
+ context ".first" do
451
+ it 'returns the first records' do
452
+ result = Bio::Ucsc::PonAbe2::History.first
453
+ pp result
454
+ result.should be_true
455
+ end
456
+ end
457
+ end
458
+
459
+ describe "Bio::Ucsc::PonAbe2::ImageClone" do
460
+ context ".first" do
461
+ it 'returns the first records' do
462
+ result = Bio::Ucsc::PonAbe2::ImageClone.first
463
+ pp result
464
+ result.should be_true
465
+ end
466
+ end
467
+ end
468
+
469
+ describe "Bio::Ucsc::PonAbe2::IntronEst" do
470
+ context ".find_by_interval" do
471
+ it 'returns the first records' do
472
+ gi = Bio::GenomicInterval.parse("chrX:1-10,000,000")
473
+ result = Bio::Ucsc::PonAbe2::IntronEst.find_by_interval gi
474
+ pp result
475
+ result.should be_true
476
+ end
477
+ end
478
+ end
479
+
480
+ describe "Bio::Ucsc::PonAbe2::Keyword" do
481
+ context ".first" do
482
+ it 'returns the first records' do
483
+ result = Bio::Ucsc::PonAbe2::Keyword.first
484
+ pp result
485
+ result.should be_true
486
+ end
487
+ end
488
+ end
489
+
490
+ describe "Bio::Ucsc::PonAbe2::Library" do
491
+ context ".first" do
492
+ it 'returns the first records' do
493
+ result = Bio::Ucsc::PonAbe2::Library.first
494
+ pp result
495
+ result.should be_true
496
+ end
497
+ end
498
+ end
499
+
500
+ describe "Bio::Ucsc::PonAbe2::Mrna" do
501
+ context ".find_by_interval" do
502
+ it 'returns the first records' do
503
+ gi = Bio::GenomicInterval.parse("chrX:1-10,000,000")
504
+ result = Bio::Ucsc::PonAbe2::Mrna.find_by_interval gi
505
+ pp result
506
+ result.should be_true
507
+ end
508
+ end
509
+ end
510
+
511
+ describe "Bio::Ucsc::PonAbe2::MrnaClone" do
512
+ context ".first" do
513
+ it 'returns the first records' do
514
+ result = Bio::Ucsc::PonAbe2::MrnaClone.first
515
+ pp result
516
+ result.should be_true
517
+ end
518
+ end
519
+ end
520
+
521
+ describe "Bio::Ucsc::PonAbe2::MrnaOrientInfo" do
522
+ context ".first" do
523
+ it 'returns the first records' do
524
+ result = Bio::Ucsc::PonAbe2::MrnaOrientInfo.first
525
+ pp result
526
+ result.should be_true
527
+ end
528
+ end
529
+ end
530
+
531
+ describe "Bio::Ucsc::PonAbe2::Multiz8way" do
532
+ context ".first" do
533
+ it 'returns the first records' do
534
+ result = Bio::Ucsc::PonAbe2::Multiz8way.first
535
+ pp result
536
+ result.should be_true
537
+ end
538
+ end
539
+ end
540
+
541
+ describe "Bio::Ucsc::PonAbe2::Multiz8wayFrames" do
542
+ context ".first" do
543
+ it 'returns the first records' do
544
+ result = Bio::Ucsc::PonAbe2::Multiz8wayFrames.first
545
+ pp result
546
+ result.should be_true
547
+ end
548
+ end
549
+ end
550
+
551
+ describe "Bio::Ucsc::PonAbe2::Multiz8waySummary" do
552
+ context ".first" do
553
+ it 'returns the first records' do
554
+ result = Bio::Ucsc::PonAbe2::Multiz8waySummary.first
555
+ pp result
556
+ result.should be_true
557
+ end
558
+ end
559
+ end
560
+
561
+ describe "Bio::Ucsc::PonAbe2::NestedRepeats" do
562
+ context ".first" do
563
+ it 'returns the first records' do
564
+ result = Bio::Ucsc::PonAbe2::NestedRepeats.first
565
+ pp result
566
+ result.should be_true
567
+ end
568
+ end
569
+ end
570
+
571
+ describe "Bio::Ucsc::PonAbe2::NetCalJac3" do
572
+ context ".first" do
573
+ it 'returns the first records' do
574
+ result = Bio::Ucsc::PonAbe2::NetCalJac3.first
575
+ pp result
576
+ result.should be_true
577
+ end
578
+ end
579
+ end
580
+
581
+ describe "Bio::Ucsc::PonAbe2::NetHg19" do
582
+ context ".first" do
583
+ it 'returns the first records' do
584
+ result = Bio::Ucsc::PonAbe2::NetHg19.first
585
+ pp result
586
+ result.should be_true
587
+ end
588
+ end
589
+ end
590
+
591
+ describe "Bio::Ucsc::PonAbe2::NetMm9" do
592
+ context ".first" do
593
+ it 'returns the first records' do
594
+ result = Bio::Ucsc::PonAbe2::NetMm9.first
595
+ pp result
596
+ result.should be_true
597
+ end
598
+ end
599
+ end
600
+
601
+ describe "Bio::Ucsc::PonAbe2::NetMonDom5" do
602
+ context ".first" do
603
+ it 'returns the first records' do
604
+ result = Bio::Ucsc::PonAbe2::NetMonDom5.first
605
+ pp result
606
+ result.should be_true
607
+ end
608
+ end
609
+ end
610
+
611
+ describe "Bio::Ucsc::PonAbe2::NetOrnAna1" do
612
+ context ".first" do
613
+ it 'returns the first records' do
614
+ result = Bio::Ucsc::PonAbe2::NetOrnAna1.first
615
+ pp result
616
+ result.should be_true
617
+ end
618
+ end
619
+ end
620
+
621
+ describe "Bio::Ucsc::PonAbe2::NetPanTro3" do
622
+ context ".first" do
623
+ it 'returns the first records' do
624
+ result = Bio::Ucsc::PonAbe2::NetPanTro3.first
625
+ pp result
626
+ result.should be_true
627
+ end
628
+ end
629
+ end
630
+
631
+ describe "Bio::Ucsc::PonAbe2::NetRheMac2" do
632
+ context ".first" do
633
+ it 'returns the first records' do
634
+ result = Bio::Ucsc::PonAbe2::NetRheMac2.first
635
+ pp result
636
+ result.should be_true
637
+ end
638
+ end
639
+ end
640
+
641
+ describe "Bio::Ucsc::PonAbe2::NscanGene" do
642
+ context ".first" do
643
+ it 'returns the first records' do
644
+ result = Bio::Ucsc::PonAbe2::NscanGene.first
645
+ pp result
646
+ result.should be_true
647
+ end
648
+ end
649
+ end
650
+
651
+ describe "Bio::Ucsc::PonAbe2::NscanPep" do
652
+ context ".first" do
653
+ it 'returns the first records' do
654
+ result = Bio::Ucsc::PonAbe2::NscanPep.first
655
+ pp result
656
+ result.should be_true
657
+ end
658
+ end
659
+ end
660
+
661
+ describe "Bio::Ucsc::PonAbe2::Organism" do
662
+ context ".first" do
663
+ it 'returns the first records' do
664
+ result = Bio::Ucsc::PonAbe2::Organism.first
665
+ pp result
666
+ result.should be_true
667
+ end
668
+ end
669
+ end
670
+
671
+ describe "Bio::Ucsc::PonAbe2::PhastCons8way" do
672
+ context ".first" do
673
+ it 'returns the first records' do
674
+ result = Bio::Ucsc::PonAbe2::PhastCons8way.first
675
+ pp result
676
+ result.should be_true
677
+ end
678
+ end
679
+ end
680
+
681
+ describe "Bio::Ucsc::PonAbe2::PhastConsElements8way" do
682
+ context ".first" do
683
+ it 'returns the first records' do
684
+ result = Bio::Ucsc::PonAbe2::PhastConsElements8way.first
685
+ pp result
686
+ result.should be_true
687
+ end
688
+ end
689
+ end
690
+
691
+ describe "Bio::Ucsc::PonAbe2::ProductName" do
692
+ context ".first" do
693
+ it 'returns the first records' do
694
+ result = Bio::Ucsc::PonAbe2::ProductName.first
695
+ pp result
696
+ result.should be_true
697
+ end
698
+ end
699
+ end
700
+
701
+ describe "Bio::Ucsc::PonAbe2::Quality" do
702
+ context ".first" do
703
+ it 'returns the first records' do
704
+ result = Bio::Ucsc::PonAbe2::Quality.first
705
+ pp result
706
+ result.should be_true
707
+ end
708
+ end
709
+ end
710
+
711
+ describe "Bio::Ucsc::PonAbe2::RefFlat" do
712
+ context ".first" do
713
+ it 'returns the first records' do
714
+ result = Bio::Ucsc::PonAbe2::RefFlat.first
715
+ pp result
716
+ result.should be_true
717
+ end
718
+ end
719
+ end
720
+
721
+ describe "Bio::Ucsc::PonAbe2::RefGene" do
722
+ context ".first" do
723
+ it 'returns the first records' do
724
+ result = Bio::Ucsc::PonAbe2::RefGene.first
725
+ pp result
726
+ result.should be_true
727
+ end
728
+ end
729
+ end
730
+
731
+ describe "Bio::Ucsc::PonAbe2::RefLink" do
732
+ context ".first" do
733
+ it 'returns the first records' do
734
+ result = Bio::Ucsc::PonAbe2::RefLink.first
735
+ pp result
736
+ result.should be_true
737
+ end
738
+ end
739
+ end
740
+
741
+ describe "Bio::Ucsc::PonAbe2::RefSeqAli" do
742
+ context ".first" do
743
+ it 'returns the first records' do
744
+ result = Bio::Ucsc::PonAbe2::RefSeqAli.first
745
+ pp result
746
+ result.should be_true
747
+ end
748
+ end
749
+ end
750
+
751
+ describe "Bio::Ucsc::PonAbe2::RefSeqStatus" do
752
+ context ".first" do
753
+ it 'returns the first records' do
754
+ result = Bio::Ucsc::PonAbe2::RefSeqStatus.first
755
+ pp result
756
+ result.should be_true
757
+ end
758
+ end
759
+ end
760
+
761
+ describe "Bio::Ucsc::PonAbe2::RefSeqSummary" do
762
+ context ".first" do
763
+ it 'returns the first records' do
764
+ result = Bio::Ucsc::PonAbe2::RefSeqSummary.first
765
+ pp result
766
+ result.should be_true
767
+ end
768
+ end
769
+ end
770
+
771
+ describe "Bio::Ucsc::PonAbe2::Rmsk" do
772
+ context ".find_by_interval" do
773
+ it 'returns the first records' do
774
+ gi = Bio::GenomicInterval.parse("chrX:1-10,000,000")
775
+ result = Bio::Ucsc::PonAbe2::Rmsk.find_by_interval gi
776
+ pp result
777
+ result.should be_true
778
+ end
779
+ end
780
+ end
781
+
782
+ describe "Bio::Ucsc::PonAbe2::Sex" do
783
+ context ".first" do
784
+ it 'returns the first records' do
785
+ result = Bio::Ucsc::PonAbe2::Sex.first
786
+ pp result
787
+ result.should be_true
788
+ end
789
+ end
790
+ end
791
+
792
+ describe "Bio::Ucsc::PonAbe2::SimpleRepeat" do
793
+ context ".first" do
794
+ it 'returns the first records' do
795
+ result = Bio::Ucsc::PonAbe2::SimpleRepeat.first
796
+ pp result
797
+ result.should be_true
798
+ end
799
+ end
800
+ end
801
+
802
+ describe "Bio::Ucsc::PonAbe2::Source" do
803
+ context ".first" do
804
+ it 'returns the first records' do
805
+ result = Bio::Ucsc::PonAbe2::Source.first
806
+ pp result
807
+ result.should be_true
808
+ end
809
+ end
810
+ end
811
+
812
+ describe "Bio::Ucsc::PonAbe2::TableDescriptions" do
813
+ context ".first" do
814
+ it 'returns the first records' do
815
+ result = Bio::Ucsc::PonAbe2::TableDescriptions.first
816
+ pp result
817
+ result.should be_true
818
+ end
819
+ end
820
+ end
821
+
822
+ describe "Bio::Ucsc::PonAbe2::Tissue" do
823
+ context ".first" do
824
+ it 'returns the first records' do
825
+ result = Bio::Ucsc::PonAbe2::Tissue.first
826
+ pp result
827
+ result.should be_true
828
+ end
829
+ end
830
+ end
831
+
832
+ describe "Bio::Ucsc::PonAbe2::TrackDb" do
833
+ context ".first" do
834
+ it 'returns the first records' do
835
+ result = Bio::Ucsc::PonAbe2::TrackDb.first
836
+ pp result
837
+ result.should be_true
838
+ end
839
+ end
840
+ end
841
+
842
+ describe "Bio::Ucsc::PonAbe2::TransMapAlnMRna" do
843
+ context ".first" do
844
+ it 'returns the first records' do
845
+ result = Bio::Ucsc::PonAbe2::TransMapAlnMRna.first
846
+ pp result
847
+ result.should be_true
848
+ end
849
+ end
850
+ end
851
+
852
+ describe "Bio::Ucsc::PonAbe2::TransMapAlnRefSeq" do
853
+ context ".first" do
854
+ it 'returns the first records' do
855
+ result = Bio::Ucsc::PonAbe2::TransMapAlnRefSeq.first
856
+ pp result
857
+ result.should be_true
858
+ end
859
+ end
860
+ end
861
+
862
+ describe "Bio::Ucsc::PonAbe2::TransMapAlnSplicedEst" do
863
+ context ".first" do
864
+ it 'returns the first records' do
865
+ result = Bio::Ucsc::PonAbe2::TransMapAlnSplicedEst.first
866
+ pp result
867
+ result.should be_true
868
+ end
869
+ end
870
+ end
871
+
872
+ describe "Bio::Ucsc::PonAbe2::TransMapAlnUcscGenes" do
873
+ context ".first" do
874
+ it 'returns the first records' do
875
+ result = Bio::Ucsc::PonAbe2::TransMapAlnUcscGenes.first
876
+ pp result
877
+ result.should be_true
878
+ end
879
+ end
880
+ end
881
+
882
+ describe "Bio::Ucsc::PonAbe2::TransMapInfoMRna" do
883
+ context ".first" do
884
+ it 'returns the first records' do
885
+ result = Bio::Ucsc::PonAbe2::TransMapInfoMRna.first
886
+ pp result
887
+ result.should be_true
888
+ end
889
+ end
890
+ end
891
+
892
+ describe "Bio::Ucsc::PonAbe2::TransMapInfoRefSeq" do
893
+ context ".first" do
894
+ it 'returns the first records' do
895
+ result = Bio::Ucsc::PonAbe2::TransMapInfoRefSeq.first
896
+ pp result
897
+ result.should be_true
898
+ end
899
+ end
900
+ end
901
+
902
+ describe "Bio::Ucsc::PonAbe2::TransMapInfoSplicedEst" do
903
+ context ".first" do
904
+ it 'returns the first records' do
905
+ result = Bio::Ucsc::PonAbe2::TransMapInfoSplicedEst.first
906
+ pp result
907
+ result.should be_true
908
+ end
909
+ end
910
+ end
911
+
912
+ describe "Bio::Ucsc::PonAbe2::TransMapInfoUcscGenes" do
913
+ context ".first" do
914
+ it 'returns the first records' do
915
+ result = Bio::Ucsc::PonAbe2::TransMapInfoUcscGenes.first
916
+ pp result
917
+ result.should be_true
918
+ end
919
+ end
920
+ end
921
+
922
+ describe "Bio::Ucsc::PonAbe2::XenoMrna" do
923
+ context ".first" do
924
+ it 'returns the first records' do
925
+ result = Bio::Ucsc::PonAbe2::XenoMrna.first
926
+ pp result
927
+ result.should be_true
928
+ end
929
+ end
930
+ end
931
+
932
+ describe "Bio::Ucsc::PonAbe2::XenoRefFlat" do
933
+ context ".first" do
934
+ it 'returns the first records' do
935
+ result = Bio::Ucsc::PonAbe2::XenoRefFlat.first
936
+ pp result
937
+ result.should be_true
938
+ end
939
+ end
940
+ end
941
+
942
+ describe "Bio::Ucsc::PonAbe2::XenoRefGene" do
943
+ context ".first" do
944
+ it 'returns the first records' do
945
+ result = Bio::Ucsc::PonAbe2::XenoRefGene.first
946
+ pp result
947
+ result.should be_true
948
+ end
949
+ end
950
+ end
951
+
952
+ describe "Bio::Ucsc::PonAbe2::XenoRefSeqAli" do
953
+ context ".first" do
954
+ it 'returns the first records' do
955
+ result = Bio::Ucsc::PonAbe2::XenoRefSeqAli.first
956
+ pp result
957
+ result.should be_true
958
+ end
959
+ end
960
+ end
961
+
962
+ end