bio-ucsc-api 0.2.0 → 0.2.1

data/spec/drovir2_spec.rb

@@ -0,0 +1,540 @@
+require "bio-ucsc"
+require "pp"
+
+describe "Bio::Ucsc::DroVir2" do
+
+  before(:all) do
+    Bio::Ucsc::DroVir2::DBConnection.connect
+  end
+
+  describe "Bio::Ucsc::DroVir2::All_est" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::All_est.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::All_mrna" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::All_mrna.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::Author" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::Author.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::BlastDm2FB" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::BlastDm2FB.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::Cds" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::Cds.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::Cell" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::Cell.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::ChainDm2" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::ChainDm2.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::ChainDm2Link" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::ChainDm2Link.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::ChromInfo" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::ChromInfo.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::Description" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::Description.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::Development" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::Development.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::EstOrientInfo" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::EstOrientInfo.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::Gap" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::Gap.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::GbCdnaInfo" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::GbCdnaInfo.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::GbDelete_tmp" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::GbDelete_tmp.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::GbExtFile" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::GbExtFile.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::GbLoaded" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::GbLoaded.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::GbMiscDiff" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::GbMiscDiff.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::GbSeq" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::GbSeq.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::GbStatus" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::GbStatus.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::GbWarn" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::GbWarn.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::Gc5Base" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::Gc5Base.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::GeneMapper" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::GeneMapper.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::GeneName" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::GeneName.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::Genscan" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::Genscan.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::GenscanPep" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::GenscanPep.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::Gold" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::Gold.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::Grp" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::Grp.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::HgFindSpec" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::HgFindSpec.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::History" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::History.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::ImageClone" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::ImageClone.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::IntronEst" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::IntronEst.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::Keyword" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::Keyword.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::Library" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::Library.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::MrnaClone" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::MrnaClone.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::MrnaOrientInfo" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::MrnaOrientInfo.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::NetDm2" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::NetDm2.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::Organism" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::Organism.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::ProductName" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::ProductName.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::RefLink" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::RefLink.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::RefSeqStatus" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::RefSeqStatus.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::RefSeqSummary" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::RefSeqSummary.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::Rmsk" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::Rmsk.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::Sex" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::Sex.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::SimpleRepeat" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::SimpleRepeat.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::Source" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::Source.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::TableDescriptions" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::TableDescriptions.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::Tissue" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::Tissue.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::TrackDb" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::TrackDb.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::XenoMrna" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::XenoMrna.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::XenoRefFlat" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::XenoRefFlat.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::XenoRefGene" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::XenoRefGene.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DroVir2::XenoRefSeqAli" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DroVir2::XenoRefSeqAli.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+end