bio-ucsc-api 0.2.0 → 0.2.1

data/spec/danrer7_spec.rb

@@ -0,0 +1,810 @@
+require "bio-ucsc"
+require "pp"
+
+describe "Bio::Ucsc::DanRer7" do
+
+  before(:all) do
+    Bio::Ucsc::DanRer7::DBConnection.connect
+  end
+
+  describe "Bio::Ucsc::DanRer7::All_est" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::All_est.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::All_mrna" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::All_mrna.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::Author" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::Author.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::BlastHg18KG" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::BlastHg18KG.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::Cds" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::Cds.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::Cell" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::Cell.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::ChainFr2" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::ChainFr2.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::ChainFr2Link" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::ChainFr2Link.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::ChainGasAcu1" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::ChainGasAcu1.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::ChainGasAcu1Link" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::ChainGasAcu1Link.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::ChainHg19" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::ChainHg19.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::ChainHg19Link" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::ChainHg19Link.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::ChainMm9" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::ChainMm9.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::ChainMm9Link" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::ChainMm9Link.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::ChainOryLat2" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::ChainOryLat2.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::ChainOryLat2Link" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::ChainOryLat2Link.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::ChainPanTro3" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::ChainPanTro3.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::ChainPanTro3Link" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::ChainPanTro3Link.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::ChainTetNig2" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::ChainTetNig2.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::ChainTetNig2Link" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::ChainTetNig2Link.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::ChainXenTro2" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::ChainXenTro2.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::ChainXenTro2Link" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::ChainXenTro2Link.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::ChromInfo" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::ChromInfo.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::CpgIslandExt" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::CpgIslandExt.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::CtgPos2" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::CtgPos2.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::Description" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::Description.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::Development" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::Development.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::EnsGene" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::EnsGene.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::EnsGtp" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::EnsGtp.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::EnsPep" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::EnsPep.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::EstOrientInfo" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::EstOrientInfo.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::Gap" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::Gap.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::GbCdnaInfo" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::GbCdnaInfo.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::GbExtFile" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::GbExtFile.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::GbLoaded" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::GbLoaded.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::GbMiscDiff" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::GbMiscDiff.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::GbSeq" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::GbSeq.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::GbStatus" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::GbStatus.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::GbWarn" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::GbWarn.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::Gc5BaseBw" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::Gc5BaseBw.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::GeneName" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::GeneName.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::Gold" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::Gold.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::Grp" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::Grp.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::HgFindSpec" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::HgFindSpec.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::History" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::History.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::ImageClone" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::ImageClone.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::IntronEst" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::IntronEst.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::Keyword" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::Keyword.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::Library" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::Library.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::MrnaClone" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::MrnaClone.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::MrnaOrientInfo" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::MrnaOrientInfo.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::NcbiIncidentDb" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::NcbiIncidentDb.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::NestedRepeats" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::NestedRepeats.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::NetFr2" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::NetFr2.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::NetGasAcu1" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::NetGasAcu1.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::NetHg19" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::NetHg19.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::NetMm9" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::NetMm9.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::NetOryLat2" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::NetOryLat2.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::NetPanTro3" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::NetPanTro3.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::NetTetNig2" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::NetTetNig2.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::NetXenTro2" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::NetXenTro2.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::Organism" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::Organism.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::ProductName" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::ProductName.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::RefFlat" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::RefFlat.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::RefGene" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::RefGene.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::RefLink" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::RefLink.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::RefSeqAli" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::RefSeqAli.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::RefSeqStatus" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::RefSeqStatus.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::RefSeqSummary" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::RefSeqSummary.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::Rmsk" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::Rmsk.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::Sex" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::Sex.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::SimpleRepeat" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::SimpleRepeat.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::Source" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::Source.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::TableDescriptions" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::TableDescriptions.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::Tissue" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::Tissue.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::TrackDb" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::TrackDb.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::XenoMrna" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::XenoMrna.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::XenoRefFlat" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::XenoRefFlat.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::XenoRefGene" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::XenoRefGene.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+  describe "Bio::Ucsc::DanRer7::XenoRefSeqAli" do
+    context ".first" do
+      it 'returns the first records' do
+        result = Bio::Ucsc::DanRer7::XenoRefSeqAli.first
+        pp result
+        result.should be_true
+      end
+    end
+  end 
+
+end