bio-ucsc-api 0.2.0 → 0.2.1
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- data/README.rdoc +79 -47
- data/Rakefile +4 -2
- data/VERSION +1 -1
- data/bio-ucsc-api.gemspec +408 -3
- data/lib/bio-ucsc.rb +162 -8
- data/lib/bio-ucsc/ailmel1.rb +21 -0
- data/lib/bio-ucsc/ailmel1/db_connection.rb +57 -0
- data/lib/bio-ucsc/anocar2.rb +22 -0
- data/lib/bio-ucsc/anocar2/db_connection.rb +57 -0
- data/lib/bio-ucsc/anogam1.rb +30 -0
- data/lib/bio-ucsc/anogam1/chaindm3.rb +81 -0
- data/lib/bio-ucsc/anogam1/chaindm3link.rb +81 -0
- data/lib/bio-ucsc/anogam1/db_connection.rb +57 -0
- data/lib/bio-ucsc/anogam1/est.rb +81 -0
- data/lib/bio-ucsc/anogam1/gap.rb +81 -0
- data/lib/bio-ucsc/anogam1/gold.rb +81 -0
- data/lib/bio-ucsc/anogam1/intronest.rb +81 -0
- data/lib/bio-ucsc/anogam1/mrna.rb +81 -0
- data/lib/bio-ucsc/anogam1/rmsk.rb +78 -0
- data/lib/bio-ucsc/apimel2.rb +26 -0
- data/lib/bio-ucsc/apimel2/chaindm2.rb +81 -0
- data/lib/bio-ucsc/apimel2/chaindm2link.rb +81 -0
- data/lib/bio-ucsc/apimel2/db_connection.rb +57 -0
- data/lib/bio-ucsc/aplcal1.rb +33 -0
- data/lib/bio-ucsc/aplcal1/chaincaepb1.rb +81 -0
- data/lib/bio-ucsc/aplcal1/chaincaepb1link.rb +81 -0
- data/lib/bio-ucsc/aplcal1/chaincaerem2.rb +81 -0
- data/lib/bio-ucsc/aplcal1/chaincaerem2link.rb +81 -0
- data/lib/bio-ucsc/aplcal1/chaincb3.rb +81 -0
- data/lib/bio-ucsc/aplcal1/chaincb3link.rb +81 -0
- data/lib/bio-ucsc/aplcal1/chaince6.rb +81 -0
- data/lib/bio-ucsc/aplcal1/chaince6link.rb +81 -0
- data/lib/bio-ucsc/aplcal1/db_connection.rb +57 -0
- data/lib/bio-ucsc/aplcal1/gap.rb +81 -0
- data/lib/bio-ucsc/aplcal1/gold.rb +81 -0
- data/lib/bio-ucsc/aplcal1/rmsk.rb +78 -0
- data/lib/bio-ucsc/bostau4.rb +24 -0
- data/lib/bio-ucsc/bostau4/db_connection.rb +57 -0
- data/lib/bio-ucsc/braflo1.rb +32 -0
- data/lib/bio-ucsc/braflo1/chaingalgal3.rb +81 -0
- data/lib/bio-ucsc/braflo1/chaingalgal3link.rb +81 -0
- data/lib/bio-ucsc/braflo1/chainhg18.rb +81 -0
- data/lib/bio-ucsc/braflo1/chainhg18link.rb +81 -0
- data/lib/bio-ucsc/braflo1/chainmm9.rb +81 -0
- data/lib/bio-ucsc/braflo1/chainmm9link.rb +81 -0
- data/lib/bio-ucsc/braflo1/chainpetmar1.rb +81 -0
- data/lib/bio-ucsc/braflo1/chainpetmar1link.rb +81 -0
- data/lib/bio-ucsc/braflo1/db_connection.rb +57 -0
- data/lib/bio-ucsc/braflo1/gap.rb +81 -0
- data/lib/bio-ucsc/braflo1/gold.rb +81 -0
- data/lib/bio-ucsc/caejap1.rb +26 -0
- data/lib/bio-ucsc/caejap1/chaince6.rb +81 -0
- data/lib/bio-ucsc/caejap1/chaince6link.rb +81 -0
- data/lib/bio-ucsc/caejap1/db_connection.rb +57 -0
- data/lib/bio-ucsc/caejap1/gap.rb +81 -0
- data/lib/bio-ucsc/caejap1/gold.rb +81 -0
- data/lib/bio-ucsc/caepb2.rb +26 -0
- data/lib/bio-ucsc/caepb2/chaince6.rb +81 -0
- data/lib/bio-ucsc/caepb2/chaince6link.rb +81 -0
- data/lib/bio-ucsc/caepb2/db_connection.rb +57 -0
- data/lib/bio-ucsc/caepb2/gap.rb +81 -0
- data/lib/bio-ucsc/caepb2/gold.rb +81 -0
- data/lib/bio-ucsc/caerem3.rb +26 -0
- data/lib/bio-ucsc/caerem3/chaince6.rb +81 -0
- data/lib/bio-ucsc/caerem3/chaince6link.rb +81 -0
- data/lib/bio-ucsc/caerem3/db_connection.rb +57 -0
- data/lib/bio-ucsc/caerem3/gap.rb +81 -0
- data/lib/bio-ucsc/caerem3/gold.rb +81 -0
- data/lib/bio-ucsc/caljac3.rb +24 -0
- data/lib/bio-ucsc/caljac3/db_connection.rb +55 -0
- data/lib/bio-ucsc/canfam2.rb +39 -0
- data/lib/bio-ucsc/canfam2/chainbostau4.rb +81 -0
- data/lib/bio-ucsc/canfam2/chainbostau4link.rb +81 -0
- data/lib/bio-ucsc/canfam2/chainmm9.rb +81 -0
- data/lib/bio-ucsc/canfam2/chainmm9link.rb +81 -0
- data/lib/bio-ucsc/canfam2/chainrn4.rb +81 -0
- data/lib/bio-ucsc/canfam2/chainrn4link.rb +81 -0
- data/lib/bio-ucsc/canfam2/chainself.rb +81 -0
- data/lib/bio-ucsc/canfam2/chainselflink.rb +81 -0
- data/lib/bio-ucsc/canfam2/db_connection.rb +57 -0
- data/lib/bio-ucsc/canfam2/est.rb +81 -0
- data/lib/bio-ucsc/canfam2/gap.rb +81 -0
- data/lib/bio-ucsc/canfam2/gold.rb +81 -0
- data/lib/bio-ucsc/canfam2/intronest.rb +81 -0
- data/lib/bio-ucsc/canfam2/mrna.rb +81 -0
- data/lib/bio-ucsc/canfam2/rmsk.rb +78 -0
- data/lib/bio-ucsc/cavpor3.rb +21 -0
- data/lib/bio-ucsc/cavpor3/db_connection.rb +57 -0
- data/lib/bio-ucsc/cb3.rb +36 -0
- data/lib/bio-ucsc/cb3/chaincaepb1.rb +81 -0
- data/lib/bio-ucsc/cb3/chaincaepb1link.rb +81 -0
- data/lib/bio-ucsc/cb3/chaincaerem2.rb +81 -0
- data/lib/bio-ucsc/cb3/chaincaerem2link.rb +81 -0
- data/lib/bio-ucsc/cb3/chaince6.rb +81 -0
- data/lib/bio-ucsc/cb3/chaince6link.rb +81 -0
- data/lib/bio-ucsc/cb3/chainpripac1.rb +81 -0
- data/lib/bio-ucsc/cb3/chainpripac1link.rb +81 -0
- data/lib/bio-ucsc/cb3/db_connection.rb +57 -0
- data/lib/bio-ucsc/cb3/est.rb +81 -0
- data/lib/bio-ucsc/cb3/gap.rb +81 -0
- data/lib/bio-ucsc/cb3/gold.rb +81 -0
- data/lib/bio-ucsc/cb3/intronest.rb +81 -0
- data/lib/bio-ucsc/cb3/mrna.rb +81 -0
- data/lib/bio-ucsc/cb3/rmsk.rb +78 -0
- data/lib/bio-ucsc/ce6/chaincaejap1.rb +2 -2
- data/lib/bio-ucsc/ce6/chaincaejap1link.rb +2 -2
- data/lib/bio-ucsc/ce6/chaincaepb2.rb +2 -2
- data/lib/bio-ucsc/ce6/chaincaepb2link.rb +2 -2
- data/lib/bio-ucsc/ce6/chaincaerem3.rb +2 -2
- data/lib/bio-ucsc/ce6/chaincaerem3link.rb +2 -2
- data/lib/bio-ucsc/ce6/chaincb3.rb +2 -2
- data/lib/bio-ucsc/ce6/chaincb3link.rb +2 -2
- data/lib/bio-ucsc/ce6/chainpripac1.rb +2 -2
- data/lib/bio-ucsc/ce6/chainpripac1link.rb +2 -2
- data/lib/bio-ucsc/ce6/chainself.rb +2 -2
- data/lib/bio-ucsc/ce6/chainselflink.rb +2 -2
- data/lib/bio-ucsc/ce6/db_connection.rb +5 -6
- data/lib/bio-ucsc/ce6/est.rb +2 -2
- data/lib/bio-ucsc/ce6/gap.rb +2 -2
- data/lib/bio-ucsc/ce6/gold.rb +2 -2
- data/lib/bio-ucsc/ce6/intronest.rb +2 -2
- data/lib/bio-ucsc/ce6/mrna.rb +2 -2
- data/lib/bio-ucsc/ce6/rmsk.rb +2 -2
- data/lib/bio-ucsc/ce6/t25mersrepeats.rb +2 -2
- data/lib/bio-ucsc/ci2.rb +23 -0
- data/lib/bio-ucsc/ci2/db_connection.rb +55 -0
- data/lib/bio-ucsc/danrer7.rb +24 -0
- data/lib/bio-ucsc/danrer7/db_connection.rb +57 -0
- data/lib/bio-ucsc/dm3/chainanogam1.rb +2 -2
- data/lib/bio-ucsc/dm3/chainanogam1link.rb +2 -2
- data/lib/bio-ucsc/dm3/chainapimel3.rb +2 -2
- data/lib/bio-ucsc/dm3/chainapimel3link.rb +2 -2
- data/lib/bio-ucsc/dm3/chaindp3.rb +2 -2
- data/lib/bio-ucsc/dm3/chaindp3link.rb +2 -2
- data/lib/bio-ucsc/dm3/chaindroana2.rb +2 -2
- data/lib/bio-ucsc/dm3/chaindroana2link.rb +2 -2
- data/lib/bio-ucsc/dm3/chaindroere1.rb +2 -2
- data/lib/bio-ucsc/dm3/chaindroere1link.rb +2 -2
- data/lib/bio-ucsc/dm3/chaindroper1.rb +2 -2
- data/lib/bio-ucsc/dm3/chaindroper1link.rb +2 -2
- data/lib/bio-ucsc/dm3/chaindrosec1.rb +2 -2
- data/lib/bio-ucsc/dm3/chaindrosec1link.rb +2 -2
- data/lib/bio-ucsc/dm3/chaindrosim1.rb +2 -2
- data/lib/bio-ucsc/dm3/chaindrosim1link.rb +2 -2
- data/lib/bio-ucsc/dm3/chaindroyak2.rb +2 -2
- data/lib/bio-ucsc/dm3/chaindroyak2link.rb +2 -2
- data/lib/bio-ucsc/dm3/db_connection.rb +5 -6
- data/lib/bio-ucsc/dm3/est.rb +2 -2
- data/lib/bio-ucsc/dm3/gap.rb +2 -2
- data/lib/bio-ucsc/dm3/gold.rb +2 -2
- data/lib/bio-ucsc/dm3/intronest.rb +2 -2
- data/lib/bio-ucsc/dm3/mrna.rb +2 -2
- data/lib/bio-ucsc/dm3/rmsk.rb +2 -2
- data/lib/bio-ucsc/dp3.rb +33 -0
- data/lib/bio-ucsc/dp3/chaindm3.rb +81 -0
- data/lib/bio-ucsc/dp3/chaindm3link.rb +81 -0
- data/lib/bio-ucsc/dp3/db_connection.rb +57 -0
- data/lib/bio-ucsc/dp3/est.rb +81 -0
- data/lib/bio-ucsc/dp3/gap.rb +81 -0
- data/lib/bio-ucsc/dp3/gold.rb +81 -0
- data/lib/bio-ucsc/dp3/intronest.rb +81 -0
- data/lib/bio-ucsc/dp3/mrna.rb +81 -0
- data/lib/bio-ucsc/dp3/rmsk.rb +78 -0
- data/lib/bio-ucsc/droana2.rb +22 -0
- data/lib/bio-ucsc/droana2/db_connection.rb +57 -0
- data/lib/bio-ucsc/droere1.rb +22 -0
- data/lib/bio-ucsc/droere1/db_connection.rb +57 -0
- data/lib/bio-ucsc/drogri1.rb +22 -0
- data/lib/bio-ucsc/drogri1/db_connection.rb +57 -0
- data/lib/bio-ucsc/dromoj2.rb +22 -0
- data/lib/bio-ucsc/dromoj2/db_connection.rb +57 -0
- data/lib/bio-ucsc/droper1.rb +22 -0
- data/lib/bio-ucsc/droper1/db_connection.rb +57 -0
- data/lib/bio-ucsc/drosec1.rb +22 -0
- data/lib/bio-ucsc/drosec1/db_connection.rb +57 -0
- data/lib/bio-ucsc/drosim1.rb +30 -0
- data/lib/bio-ucsc/drosim1/chaindm3.rb +81 -0
- data/lib/bio-ucsc/drosim1/chaindm3link.rb +81 -0
- data/lib/bio-ucsc/drosim1/db_connection.rb +57 -0
- data/lib/bio-ucsc/drosim1/est.rb +81 -0
- data/lib/bio-ucsc/drosim1/gap.rb +81 -0
- data/lib/bio-ucsc/drosim1/gold.rb +81 -0
- data/lib/bio-ucsc/drosim1/intronest.rb +81 -0
- data/lib/bio-ucsc/drosim1/mrna.rb +81 -0
- data/lib/bio-ucsc/drosim1/rmsk.rb +78 -0
- data/lib/bio-ucsc/drovir2.rb +22 -0
- data/lib/bio-ucsc/drovir2/db_connection.rb +57 -0
- data/lib/bio-ucsc/droyak2.rb +32 -0
- data/lib/bio-ucsc/droyak2/chaindm3.rb +81 -0
- data/lib/bio-ucsc/droyak2/chaindm3link.rb +81 -0
- data/lib/bio-ucsc/droyak2/db_connection.rb +57 -0
- data/lib/bio-ucsc/droyak2/est.rb +81 -0
- data/lib/bio-ucsc/droyak2/gap.rb +81 -0
- data/lib/bio-ucsc/droyak2/gold.rb +81 -0
- data/lib/bio-ucsc/droyak2/intronest.rb +81 -0
- data/lib/bio-ucsc/droyak2/mrna.rb +81 -0
- data/lib/bio-ucsc/droyak2/rmsk.rb +78 -0
- data/lib/bio-ucsc/equcab2.rb +31 -0
- data/lib/bio-ucsc/equcab2/db_connection.rb +57 -0
- data/lib/bio-ucsc/equcab2/est.rb +81 -0
- data/lib/bio-ucsc/equcab2/gap.rb +81 -0
- data/lib/bio-ucsc/equcab2/gold.rb +81 -0
- data/lib/bio-ucsc/equcab2/intronest.rb +81 -0
- data/lib/bio-ucsc/equcab2/mrna.rb +81 -0
- data/lib/bio-ucsc/equcab2/rmsk.rb +78 -0
- data/lib/bio-ucsc/felcat4.rb +23 -0
- data/lib/bio-ucsc/felcat4/db_connection.rb +57 -0
- data/lib/bio-ucsc/fr2.rb +35 -0
- data/lib/bio-ucsc/fr2/chaingalgal3.rb +81 -0
- data/lib/bio-ucsc/fr2/chaingalgal3link.rb +81 -0
- data/lib/bio-ucsc/fr2/chaingasacu1.rb +81 -0
- data/lib/bio-ucsc/fr2/chaingasacu1link.rb +81 -0
- data/lib/bio-ucsc/fr2/chainmm9.rb +81 -0
- data/lib/bio-ucsc/fr2/chainmm9link.rb +81 -0
- data/lib/bio-ucsc/fr2/chainorylat2.rb +81 -0
- data/lib/bio-ucsc/fr2/chainorylat2link.rb +81 -0
- data/lib/bio-ucsc/fr2/db_connection.rb +57 -0
- data/lib/bio-ucsc/fr2/est.rb +81 -0
- data/lib/bio-ucsc/fr2/gap.rb +81 -0
- data/lib/bio-ucsc/fr2/gold.rb +81 -0
- data/lib/bio-ucsc/fr2/intronest.rb +81 -0
- data/lib/bio-ucsc/fr2/mrna.rb +81 -0
- data/lib/bio-ucsc/fr2/rmsk.rb +78 -0
- data/lib/bio-ucsc/galgal3.rb +54 -0
- data/lib/bio-ucsc/galgal3/chainanocar1.rb +81 -0
- data/lib/bio-ucsc/galgal3/chainanocar1link.rb +81 -0
- data/lib/bio-ucsc/galgal3/chainbraflo1.rb +81 -0
- data/lib/bio-ucsc/galgal3/chainbraflo1link.rb +81 -0
- data/lib/bio-ucsc/galgal3/chaincavpor3.rb +81 -0
- data/lib/bio-ucsc/galgal3/chaincavpor3link.rb +81 -0
- data/lib/bio-ucsc/galgal3/chaindanrer4.rb +81 -0
- data/lib/bio-ucsc/galgal3/chaindanrer4link.rb +81 -0
- data/lib/bio-ucsc/galgal3/chainfr2.rb +81 -0
- data/lib/bio-ucsc/galgal3/chainfr2link.rb +81 -0
- data/lib/bio-ucsc/galgal3/chaingasacu1.rb +81 -0
- data/lib/bio-ucsc/galgal3/chaingasacu1link.rb +81 -0
- data/lib/bio-ucsc/galgal3/chainmm9.rb +81 -0
- data/lib/bio-ucsc/galgal3/chainmm9link.rb +81 -0
- data/lib/bio-ucsc/galgal3/chainornana1.rb +81 -0
- data/lib/bio-ucsc/galgal3/chainornana1link.rb +81 -0
- data/lib/bio-ucsc/galgal3/chainpetmar1.rb +81 -0
- data/lib/bio-ucsc/galgal3/chainpetmar1link.rb +81 -0
- data/lib/bio-ucsc/galgal3/chainrn4.rb +81 -0
- data/lib/bio-ucsc/galgal3/chainrn4link.rb +81 -0
- data/lib/bio-ucsc/galgal3/chaintaegut1.rb +81 -0
- data/lib/bio-ucsc/galgal3/chaintaegut1link.rb +81 -0
- data/lib/bio-ucsc/galgal3/chainxentro2.rb +81 -0
- data/lib/bio-ucsc/galgal3/chainxentro2link.rb +81 -0
- data/lib/bio-ucsc/galgal3/db_connection.rb +57 -0
- data/lib/bio-ucsc/galgal3/est.rb +81 -0
- data/lib/bio-ucsc/galgal3/gap.rb +81 -0
- data/lib/bio-ucsc/galgal3/gold.rb +81 -0
- data/lib/bio-ucsc/galgal3/intronest.rb +81 -0
- data/lib/bio-ucsc/galgal3/mrna.rb +81 -0
- data/lib/bio-ucsc/galgal3/rmsk.rb +78 -0
- data/lib/bio-ucsc/gasacu1.rb +39 -0
- data/lib/bio-ucsc/gasacu1/chainanocar1.rb +81 -0
- data/lib/bio-ucsc/gasacu1/chainanocar1link.rb +81 -0
- data/lib/bio-ucsc/gasacu1/chainfr2.rb +81 -0
- data/lib/bio-ucsc/gasacu1/chainfr2link.rb +81 -0
- data/lib/bio-ucsc/gasacu1/chaingalgal3.rb +81 -0
- data/lib/bio-ucsc/gasacu1/chaingalgal3link.rb +81 -0
- data/lib/bio-ucsc/gasacu1/chainmm9.rb +81 -0
- data/lib/bio-ucsc/gasacu1/chainmm9link.rb +81 -0
- data/lib/bio-ucsc/gasacu1/chainorylat2.rb +81 -0
- data/lib/bio-ucsc/gasacu1/chainorylat2link.rb +81 -0
- data/lib/bio-ucsc/gasacu1/db_connection.rb +57 -0
- data/lib/bio-ucsc/gasacu1/est.rb +81 -0
- data/lib/bio-ucsc/gasacu1/intronest.rb +81 -0
- data/lib/bio-ucsc/gasacu1/mrna.rb +81 -0
- data/lib/bio-ucsc/gasacu1/rmsk.rb +78 -0
- data/lib/bio-ucsc/go/db_connection.rb +5 -6
- data/lib/bio-ucsc/hg18/chainanocar1.rb +2 -2
- data/lib/bio-ucsc/hg18/chainbostau4.rb +2 -2
- data/lib/bio-ucsc/hg18/chainbraflo1.rb +2 -2
- data/lib/bio-ucsc/hg18/chaincaljac1.rb +2 -2
- data/lib/bio-ucsc/hg18/chaincanfam2.rb +2 -2
- data/lib/bio-ucsc/hg18/chaincavpor3.rb +2 -2
- data/lib/bio-ucsc/hg18/chaindanrer5.rb +2 -2
- data/lib/bio-ucsc/hg18/chainequcab1.rb +2 -2
- data/lib/bio-ucsc/hg18/chainfelcat3.rb +2 -2
- data/lib/bio-ucsc/hg18/chainfr2.rb +2 -2
- data/lib/bio-ucsc/hg18/chaingalgal3.rb +2 -2
- data/lib/bio-ucsc/hg18/chaingasacu1.rb +2 -2
- data/lib/bio-ucsc/hg18/chainmm9.rb +2 -2
- data/lib/bio-ucsc/hg18/chainmondom4.rb +2 -2
- data/lib/bio-ucsc/hg18/chainornana1.rb +2 -2
- data/lib/bio-ucsc/hg18/chainorylat2.rb +2 -2
- data/lib/bio-ucsc/hg18/chainpantro2.rb +2 -2
- data/lib/bio-ucsc/hg18/chainpetmar1.rb +2 -2
- data/lib/bio-ucsc/hg18/chainponabe2.rb +2 -2
- data/lib/bio-ucsc/hg18/chainrhemac2.rb +2 -2
- data/lib/bio-ucsc/hg18/chainrn4.rb +2 -2
- data/lib/bio-ucsc/hg18/chainself.rb +2 -2
- data/lib/bio-ucsc/hg18/chainstrpur2.rb +2 -2
- data/lib/bio-ucsc/hg18/chaintaegut1.rb +2 -2
- data/lib/bio-ucsc/hg18/chaintetnig2.rb +2 -2
- data/lib/bio-ucsc/hg18/chainxentro2.rb +2 -2
- data/lib/bio-ucsc/hg18/db_connection.rb +5 -7
- data/lib/bio-ucsc/hg18/gap.rb +2 -2
- data/lib/bio-ucsc/hg18/gold.rb +2 -2
- data/lib/bio-ucsc/hg18/intronest.rb +2 -2
- data/lib/bio-ucsc/hg18/rmsk.rb +2 -2
- data/lib/bio-ucsc/hg18/rmskrm327.rb +2 -2
- data/lib/bio-ucsc/hgfixed/db_connection.rb +5 -6
- data/lib/bio-ucsc/loxafr3.rb +20 -0
- data/lib/bio-ucsc/loxafr3/db_connection.rb +57 -0
- data/lib/bio-ucsc/mm9/chainanocar1.rb +2 -2
- data/lib/bio-ucsc/mm9/chainanocar1link.rb +2 -2
- data/lib/bio-ucsc/mm9/chainbostau4.rb +2 -2
- data/lib/bio-ucsc/mm9/chainbostau4link.rb +3 -3
- data/lib/bio-ucsc/mm9/chainbraflo1.rb +2 -2
- data/lib/bio-ucsc/mm9/chainbraflo1link.rb +2 -2
- data/lib/bio-ucsc/mm9/chaincanfam2.rb +2 -2
- data/lib/bio-ucsc/mm9/chaincanfam2link.rb +2 -2
- data/lib/bio-ucsc/mm9/chaincavpor3.rb +2 -2
- data/lib/bio-ucsc/mm9/chaincavpor3link.rb +2 -2
- data/lib/bio-ucsc/mm9/chainfr2.rb +2 -2
- data/lib/bio-ucsc/mm9/chainfr2link.rb +2 -2
- data/lib/bio-ucsc/mm9/chaingalgal3.rb +2 -2
- data/lib/bio-ucsc/mm9/chaingalgal3link.rb +2 -2
- data/lib/bio-ucsc/mm9/chaingasacu1.rb +2 -2
- data/lib/bio-ucsc/mm9/chaingasacu1link.rb +2 -2
- data/lib/bio-ucsc/mm9/chainornana1.rb +2 -2
- data/lib/bio-ucsc/mm9/chainornana1link.rb +2 -2
- data/lib/bio-ucsc/mm9/chainorylat2.rb +2 -2
- data/lib/bio-ucsc/mm9/chainorylat2link.rb +2 -2
- data/lib/bio-ucsc/mm9/chainpantro2.rb +2 -2
- data/lib/bio-ucsc/mm9/chainpantro2link.rb +2 -2
- data/lib/bio-ucsc/mm9/chainpetmar1.rb +2 -2
- data/lib/bio-ucsc/mm9/chainpetmar1link.rb +2 -2
- data/lib/bio-ucsc/mm9/chainponabe2.rb +2 -2
- data/lib/bio-ucsc/mm9/chainponabe2link.rb +2 -2
- data/lib/bio-ucsc/mm9/chainrhemac2.rb +2 -2
- data/lib/bio-ucsc/mm9/chainrhemac2link.rb +2 -2
- data/lib/bio-ucsc/mm9/chainrn4.rb +2 -2
- data/lib/bio-ucsc/mm9/chainrn4link.rb +2 -2
- data/lib/bio-ucsc/mm9/chainxentro2.rb +2 -2
- data/lib/bio-ucsc/mm9/chainxentro2link.rb +2 -2
- data/lib/bio-ucsc/mm9/db_connection.rb +6 -7
- data/lib/bio-ucsc/mm9/est.rb +2 -2
- data/lib/bio-ucsc/mm9/gap.rb +2 -2
- data/lib/bio-ucsc/mm9/gold.rb +2 -2
- data/lib/bio-ucsc/mm9/intronest.rb +2 -2
- data/lib/bio-ucsc/mm9/mrna.rb +2 -2
- data/lib/bio-ucsc/mm9/rmsk.rb +2 -2
- data/lib/bio-ucsc/mondom5.rb +21 -0
- data/lib/bio-ucsc/mondom5/db_connection.rb +57 -0
- data/lib/bio-ucsc/ornana1.rb +20 -0
- data/lib/bio-ucsc/ornana1/db_connection.rb +57 -0
- data/lib/bio-ucsc/orycun2.rb +24 -0
- data/lib/bio-ucsc/orycun2/db_connection.rb +57 -0
- data/lib/bio-ucsc/orylat2.rb +24 -0
- data/lib/bio-ucsc/orylat2/db_connection.rb +55 -0
- data/lib/bio-ucsc/oviari1.rb +24 -0
- data/lib/bio-ucsc/oviari1/db_connection.rb +57 -0
- data/lib/bio-ucsc/pantro3.rb +24 -0
- data/lib/bio-ucsc/pantro3/db_connection.rb +55 -0
- data/lib/bio-ucsc/petmar1.rb +22 -0
- data/lib/bio-ucsc/petmar1/db_connection.rb +57 -0
- data/lib/bio-ucsc/ponabe2.rb +36 -0
- data/lib/bio-ucsc/ponabe2/chainmm9.rb +81 -0
- data/lib/bio-ucsc/ponabe2/chainmm9link.rb +81 -0
- data/lib/bio-ucsc/ponabe2/chainornana1.rb +81 -0
- data/lib/bio-ucsc/ponabe2/chainornana1link.rb +81 -0
- data/lib/bio-ucsc/ponabe2/chainrhemac2.rb +81 -0
- data/lib/bio-ucsc/ponabe2/chainrhemac2link.rb +81 -0
- data/lib/bio-ucsc/ponabe2/db_connection.rb +55 -0
- data/lib/bio-ucsc/ponabe2/est.rb +81 -0
- data/lib/bio-ucsc/ponabe2/gap.rb +81 -0
- data/lib/bio-ucsc/ponabe2/gold.rb +81 -0
- data/lib/bio-ucsc/ponabe2/intronest.rb +81 -0
- data/lib/bio-ucsc/ponabe2/mrna.rb +81 -0
- data/lib/bio-ucsc/ponabe2/rmsk.rb +78 -0
- data/lib/bio-ucsc/pripac1.rb +33 -0
- data/lib/bio-ucsc/pripac1/chaincaepb1.rb +81 -0
- data/lib/bio-ucsc/pripac1/chaincaepb1link.rb +81 -0
- data/lib/bio-ucsc/pripac1/chaincaerem2.rb +81 -0
- data/lib/bio-ucsc/pripac1/chaincaerem2link.rb +81 -0
- data/lib/bio-ucsc/pripac1/chaincb3.rb +81 -0
- data/lib/bio-ucsc/pripac1/chaincb3link.rb +81 -0
- data/lib/bio-ucsc/pripac1/chaince6.rb +81 -0
- data/lib/bio-ucsc/pripac1/chaince6link.rb +81 -0
- data/lib/bio-ucsc/pripac1/db_connection.rb +57 -0
- data/lib/bio-ucsc/pripac1/gap.rb +81 -0
- data/lib/bio-ucsc/pripac1/gold.rb +81 -0
- data/lib/bio-ucsc/pripac1/rmsk.rb +78 -0
- data/lib/bio-ucsc/proteome/db_connection.rb +5 -7
- data/lib/bio-ucsc/rhemac2.rb +32 -0
- data/lib/bio-ucsc/rhemac2/chainmm9.rb +81 -0
- data/lib/bio-ucsc/rhemac2/chainmm9link.rb +81 -0
- data/lib/bio-ucsc/rhemac2/chainpantro2.rb +81 -0
- data/lib/bio-ucsc/rhemac2/chainpantro2link.rb +81 -0
- data/lib/bio-ucsc/rhemac2/chainponabe2.rb +81 -0
- data/lib/bio-ucsc/rhemac2/chainponabe2link.rb +81 -0
- data/lib/bio-ucsc/rhemac2/chainrn4.rb +81 -0
- data/lib/bio-ucsc/rhemac2/chainrn4link.rb +81 -0
- data/lib/bio-ucsc/rhemac2/db_connection.rb +55 -0
- data/lib/bio-ucsc/rn4.rb +52 -0
- data/lib/bio-ucsc/rn4/chainbostau3.rb +79 -0
- data/lib/bio-ucsc/rn4/chainbostau3link.rb +79 -0
- data/lib/bio-ucsc/rn4/chaincanfam2.rb +82 -0
- data/lib/bio-ucsc/rn4/chaincanfam2link.rb +82 -0
- data/lib/bio-ucsc/rn4/chaincavpor3.rb +81 -0
- data/lib/bio-ucsc/rn4/chaincavpor3link.rb +81 -0
- data/lib/bio-ucsc/rn4/chaindanrer4.rb +81 -0
- data/lib/bio-ucsc/rn4/chaindanrer4link.rb +81 -0
- data/lib/bio-ucsc/rn4/chainequcab1.rb +81 -0
- data/lib/bio-ucsc/rn4/chainequcab1link.rb +81 -0
- data/lib/bio-ucsc/rn4/chaingalgal3.rb +81 -0
- data/lib/bio-ucsc/rn4/chaingalgal3link.rb +81 -0
- data/lib/bio-ucsc/rn4/chainmm9.rb +81 -0
- data/lib/bio-ucsc/rn4/chainmm9link.rb +81 -0
- data/lib/bio-ucsc/rn4/chainmondom4.rb +81 -0
- data/lib/bio-ucsc/rn4/chainmondom4link.rb +81 -0
- data/lib/bio-ucsc/rn4/chainpantro2.rb +81 -0
- data/lib/bio-ucsc/rn4/chainpantro2link.rb +82 -0
- data/lib/bio-ucsc/rn4/chainrhemac2.rb +81 -0
- data/lib/bio-ucsc/rn4/chainrhemac2link.rb +81 -0
- data/lib/bio-ucsc/rn4/chainxentro2.rb +81 -0
- data/lib/bio-ucsc/rn4/chainxentro2link.rb +81 -0
- data/lib/bio-ucsc/rn4/db_connection.rb +55 -0
- data/lib/bio-ucsc/rn4/est.rb +81 -0
- data/lib/bio-ucsc/rn4/gap.rb +81 -0
- data/lib/bio-ucsc/rn4/gold.rb +81 -0
- data/lib/bio-ucsc/rn4/intronest.rb +81 -0
- data/lib/bio-ucsc/rn4/mrna.rb +81 -0
- data/lib/bio-ucsc/rn4/rmsk.rb +78 -0
- data/lib/bio-ucsc/saccer2.rb +33 -0
- data/lib/bio-ucsc/saccer2/db_connection.rb +55 -0
- data/lib/bio-ucsc/saccer2/est.rb +83 -0
- data/lib/bio-ucsc/saccer2/gap.rb +83 -0
- data/lib/bio-ucsc/saccer2/gold.rb +83 -0
- data/lib/bio-ucsc/saccer2/intronest.rb +83 -0
- data/lib/bio-ucsc/saccer2/mrna.rb +83 -0
- data/lib/bio-ucsc/saccer2/t2micron_est.rb +57 -0
- data/lib/bio-ucsc/saccer2/t2micron_gap.rb +57 -0
- data/lib/bio-ucsc/saccer2/t2micron_gold.rb +58 -0
- data/lib/bio-ucsc/saccer2/t2micron_intronEst.rb +57 -0
- data/lib/bio-ucsc/saccer2/t2micron_mrna.rb +57 -0
- data/lib/bio-ucsc/strpur2.rb +32 -0
- data/lib/bio-ucsc/strpur2/chaingalgal3.rb +81 -0
- data/lib/bio-ucsc/strpur2/chaingalgal3link.rb +81 -0
- data/lib/bio-ucsc/strpur2/chainhg18.rb +81 -0
- data/lib/bio-ucsc/strpur2/chainhg18link.rb +81 -0
- data/lib/bio-ucsc/strpur2/chainmm9.rb +81 -0
- data/lib/bio-ucsc/strpur2/chainmm9link.rb +81 -0
- data/lib/bio-ucsc/strpur2/chainpetmar1.rb +81 -0
- data/lib/bio-ucsc/strpur2/chainpetmar1link.rb +81 -0
- data/lib/bio-ucsc/strpur2/db_connection.rb +57 -0
- data/lib/bio-ucsc/strpur2/gap.rb +81 -0
- data/lib/bio-ucsc/strpur2/gold.rb +81 -0
- data/lib/bio-ucsc/susscr2.rb +26 -0
- data/lib/bio-ucsc/susscr2/db_connection.rb +57 -0
- data/lib/bio-ucsc/susscr2/est.rb +81 -0
- data/lib/bio-ucsc/susscr2/intronest.rb +81 -0
- data/lib/bio-ucsc/susscr2/mrna.rb +81 -0
- data/lib/bio-ucsc/table_class_detector.rb +18 -22
- data/lib/bio-ucsc/taegut1.rb +33 -0
- data/lib/bio-ucsc/taegut1/chaingalgal3.rb +81 -0
- data/lib/bio-ucsc/taegut1/chaingalgal3link.rb +81 -0
- data/lib/bio-ucsc/taegut1/db_connection.rb +57 -0
- data/lib/bio-ucsc/taegut1/est.rb +81 -0
- data/lib/bio-ucsc/taegut1/gap.rb +81 -0
- data/lib/bio-ucsc/taegut1/gold.rb +81 -0
- data/lib/bio-ucsc/taegut1/intronest.rb +81 -0
- data/lib/bio-ucsc/taegut1/mrna.rb +81 -0
- data/lib/bio-ucsc/taegut1/rmsk.rb +78 -0
- data/lib/bio-ucsc/tetnig2.rb +25 -0
- data/lib/bio-ucsc/tetnig2/db_connection.rb +57 -0
- data/lib/bio-ucsc/tetnig2/mrna.rb +81 -0
- data/lib/bio-ucsc/uniprot/db_connection.rb +5 -7
- data/lib/bio-ucsc/visigene/db_connection.rb +5 -6
- data/lib/bio-ucsc/xentro2.rb +30 -0
- data/lib/bio-ucsc/xentro2/chaingalgal3.rb +81 -0
- data/lib/bio-ucsc/xentro2/chaingalgal3link.rb +81 -0
- data/lib/bio-ucsc/xentro2/db_connection.rb +57 -0
- data/lib/bio-ucsc/xentro2/est.rb +81 -0
- data/lib/bio-ucsc/xentro2/gap.rb +81 -0
- data/lib/bio-ucsc/xentro2/gold.rb +81 -0
- data/lib/bio-ucsc/xentro2/intronest.rb +81 -0
- data/lib/bio-ucsc/xentro2/mrna.rb +81 -0
- data/lib/bio-ucsc/xentro2/rmsk.rb +78 -0
- data/samples/hg19-2bit-retrieve.rb +5 -2
- data/spec/ailmel1_spec.rb +770 -0
- data/spec/anocar2_spec.rb +750 -0
- data/spec/anogam1_spec.rb +568 -0
- data/spec/apimel2_spec.rb +542 -0
- data/spec/aplcal1_spec.rb +530 -0
- data/spec/bostau4_spec.rb +920 -0
- data/spec/braflo1_spec.rb +660 -0
- data/spec/caejap1_spec.rb +524 -0
- data/spec/caepb2_spec.rb +515 -0
- data/spec/caerem3_spec.rb +524 -0
- data/spec/caljac3_spec.rb +860 -0
- data/spec/canfam2_spec.rb +1145 -0
- data/spec/cavpor3_spec.rb +880 -0
- data/spec/cb3_spec.rb +634 -0
- data/spec/ci2_spec.rb +520 -0
- data/spec/danrer7_spec.rb +810 -0
- data/spec/dp3_spec.rb +617 -0
- data/spec/droana2_spec.rb +500 -0
- data/spec/droere1_spec.rb +510 -0
- data/spec/drogri1_spec.rb +470 -0
- data/spec/dromoj2_spec.rb +510 -0
- data/spec/droper1_spec.rb +470 -0
- data/spec/drosec1_spec.rb +470 -0
- data/spec/drosim1_spec.rb +588 -0
- data/spec/drovir2_spec.rb +540 -0
- data/spec/droyak2_spec.rb +558 -0
- data/spec/equcab2_spec.rb +936 -0
- data/spec/felcat4_spec.rb +770 -0
- data/spec/fr2_spec.rb +835 -0
- data/spec/galgal3_spec.rb +1351 -0
- data/spec/gasacu1_spec.rb +924 -0
- data/spec/loxafr3_spec.rb +550 -0
- data/spec/mondom5_spec.rb +1230 -0
- data/spec/ornana1_spec.rb +980 -0
- data/spec/orycun2_spec.rb +770 -0
- data/spec/orylat2_spec.rb +930 -0
- data/spec/oviari1_spec.rb +670 -0
- data/spec/pantro3_spec.rb +810 -0
- data/spec/petmar1_spec.rb +770 -0
- data/spec/ponabe2_spec.rb +962 -0
- data/spec/pripac1_spec.rb +621 -0
- data/spec/rhemac2_spec.rb +958 -0
- data/spec/rn4_spec.rb +2038 -0
- data/spec/saccer2_spec.rb +925 -0
- data/spec/strpur2_spec.rb +600 -0
- data/spec/susscr2_spec.rb +623 -0
- data/spec/taegut1_spec.rb +768 -0
- data/spec/tetnig2_spec.rb +721 -0
- data/spec/xentro2_spec.rb +900 -0
- metadata +477 -23
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require "bio-ucsc"
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require "pp"
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describe "Bio::Ucsc::GasAcu1" do
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before(:all) do
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Bio::Ucsc::GasAcu1::DBConnection.connect
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end
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describe "Bio::Ucsc::GasAcu1::All_est" do
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context ".first" do
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it 'returns the first records' do
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result = Bio::Ucsc::GasAcu1::All_est.first
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pp result
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result.should be_true
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end
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end
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end
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describe "Bio::Ucsc::GasAcu1::All_mrna" do
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context ".first" do
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it 'returns the first records' do
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result = Bio::Ucsc::GasAcu1::All_mrna.first
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pp result
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result.should be_true
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end
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end
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end
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describe "Bio::Ucsc::GasAcu1::Author" do
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context ".first" do
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it 'returns the first records' do
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result = Bio::Ucsc::GasAcu1::Author.first
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pp result
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result.should be_true
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end
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end
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end
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describe "Bio::Ucsc::GasAcu1::BlastHg18KG" do
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context ".first" do
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it 'returns the first records' do
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result = Bio::Ucsc::GasAcu1::BlastHg18KG.first
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pp result
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result.should be_true
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end
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end
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end
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describe "Bio::Ucsc::GasAcu1::Cds" do
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context ".first" do
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it 'returns the first records' do
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result = Bio::Ucsc::GasAcu1::Cds.first
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pp result
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result.should be_true
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end
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end
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end
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describe "Bio::Ucsc::GasAcu1::Cell" do
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context ".first" do
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it 'returns the first records' do
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result = Bio::Ucsc::GasAcu1::Cell.first
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pp result
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result.should be_true
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end
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end
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end
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describe "Bio::Ucsc::GasAcu1::ChainAnoCar1" do
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context ".find_by_interval" do
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it 'returns the first records' do
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gi = Bio::GenomicInterval.parse("chrI:1-10,000,000")
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result = Bio::Ucsc::GasAcu1::ChainAnoCar1.find_by_interval gi
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pp result
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result.should be_true
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end
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end
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end
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describe "Bio::Ucsc::GasAcu1::ChainAnoCar1Link" do
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context ".find_by_interval" do
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it 'returns the first records' do
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gi = Bio::GenomicInterval.parse("chrI:1-10,000,000")
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result = Bio::Ucsc::GasAcu1::ChainAnoCar1Link.find_by_interval gi
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pp result
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result.should be_true
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end
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end
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end
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describe "Bio::Ucsc::GasAcu1::ChainDanRer7" do
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context ".first" do
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it 'returns the first records' do
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result = Bio::Ucsc::GasAcu1::ChainDanRer7.first
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pp result
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result.should be_true
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end
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end
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end
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describe "Bio::Ucsc::GasAcu1::ChainDanRer7Link" do
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context ".first" do
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it 'returns the first records' do
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result = Bio::Ucsc::GasAcu1::ChainDanRer7Link.first
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pp result
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result.should be_true
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end
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end
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end
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describe "Bio::Ucsc::GasAcu1::ChainFr2" do
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context ".find_by_interval" do
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it 'returns the first records' do
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gi = Bio::GenomicInterval.parse("chrI:1-10,000,000")
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result = Bio::Ucsc::GasAcu1::ChainFr2.find_by_interval gi
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pp result
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result.should be_true
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end
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end
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end
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describe "Bio::Ucsc::GasAcu1::ChainFr2Link" do
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context ".find_by_interval" do
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it 'returns the first records' do
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gi = Bio::GenomicInterval.parse("chrI:1-10,000,000")
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result = Bio::Ucsc::GasAcu1::ChainFr2Link.find_by_interval gi
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pp result
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result.should be_true
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end
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end
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end
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describe "Bio::Ucsc::GasAcu1::ChainGalGal3" do
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context ".find_by_interval" do
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it 'returns the first records' do
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gi = Bio::GenomicInterval.parse("chrI:1-10,000,000")
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result = Bio::Ucsc::GasAcu1::ChainGalGal3.find_by_interval gi
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pp result
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result.should be_true
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end
|
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end
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end
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describe "Bio::Ucsc::GasAcu1::ChainGalGal3Link" do
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context ".find_by_interval" do
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it 'returns the first records' do
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gi = Bio::GenomicInterval.parse("chrI:1-10,000,000")
|
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result = Bio::Ucsc::GasAcu1::ChainGalGal3Link.find_by_interval gi
|
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pp result
|
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result.should be_true
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end
|
153
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end
|
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end
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describe "Bio::Ucsc::GasAcu1::ChainHg19" do
|
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context ".first" do
|
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|
+
it 'returns the first records' do
|
159
|
+
result = Bio::Ucsc::GasAcu1::ChainHg19.first
|
160
|
+
pp result
|
161
|
+
result.should be_true
|
162
|
+
end
|
163
|
+
end
|
164
|
+
end
|
165
|
+
|
166
|
+
describe "Bio::Ucsc::GasAcu1::ChainHg19Link" do
|
167
|
+
context ".first" do
|
168
|
+
it 'returns the first records' do
|
169
|
+
result = Bio::Ucsc::GasAcu1::ChainHg19Link.first
|
170
|
+
pp result
|
171
|
+
result.should be_true
|
172
|
+
end
|
173
|
+
end
|
174
|
+
end
|
175
|
+
|
176
|
+
describe "Bio::Ucsc::GasAcu1::ChainMm9" do
|
177
|
+
context ".find_by_interval" do
|
178
|
+
it 'returns the first records' do
|
179
|
+
gi = Bio::GenomicInterval.parse("chrI:1-10,000,000")
|
180
|
+
result = Bio::Ucsc::GasAcu1::ChainMm9.find_by_interval gi
|
181
|
+
pp result
|
182
|
+
result.should be_true
|
183
|
+
end
|
184
|
+
end
|
185
|
+
end
|
186
|
+
|
187
|
+
describe "Bio::Ucsc::GasAcu1::ChainMm9Link" do
|
188
|
+
context ".find_by_interval" do
|
189
|
+
it 'returns the first records' do
|
190
|
+
gi = Bio::GenomicInterval.parse("chrI:1-10,000,000")
|
191
|
+
result = Bio::Ucsc::GasAcu1::ChainMm9Link.find_by_interval gi
|
192
|
+
pp result
|
193
|
+
result.should be_true
|
194
|
+
end
|
195
|
+
end
|
196
|
+
end
|
197
|
+
|
198
|
+
describe "Bio::Ucsc::GasAcu1::ChainOryLat2" do
|
199
|
+
context ".find_by_interval" do
|
200
|
+
it 'returns the first records' do
|
201
|
+
gi = Bio::GenomicInterval.parse("chrI:1-10,000,000")
|
202
|
+
result = Bio::Ucsc::GasAcu1::ChainOryLat2.find_by_interval gi
|
203
|
+
pp result
|
204
|
+
result.should be_true
|
205
|
+
end
|
206
|
+
end
|
207
|
+
end
|
208
|
+
|
209
|
+
describe "Bio::Ucsc::GasAcu1::ChainOryLat2Link" do
|
210
|
+
context ".find_by_interval" do
|
211
|
+
it 'returns the first records' do
|
212
|
+
gi = Bio::GenomicInterval.parse("chrI:1-10,000,000")
|
213
|
+
result = Bio::Ucsc::GasAcu1::ChainOryLat2Link.find_by_interval gi
|
214
|
+
pp result
|
215
|
+
result.should be_true
|
216
|
+
end
|
217
|
+
end
|
218
|
+
end
|
219
|
+
|
220
|
+
describe "Bio::Ucsc::GasAcu1::ChainTetNig2" do
|
221
|
+
context ".first" do
|
222
|
+
it 'returns the first records' do
|
223
|
+
result = Bio::Ucsc::GasAcu1::ChainTetNig2.first
|
224
|
+
pp result
|
225
|
+
result.should be_true
|
226
|
+
end
|
227
|
+
end
|
228
|
+
end
|
229
|
+
|
230
|
+
describe "Bio::Ucsc::GasAcu1::ChainTetNig2Link" do
|
231
|
+
context ".first" do
|
232
|
+
it 'returns the first records' do
|
233
|
+
result = Bio::Ucsc::GasAcu1::ChainTetNig2Link.first
|
234
|
+
pp result
|
235
|
+
result.should be_true
|
236
|
+
end
|
237
|
+
end
|
238
|
+
end
|
239
|
+
|
240
|
+
describe "Bio::Ucsc::GasAcu1::ChromInfo" do
|
241
|
+
context ".first" do
|
242
|
+
it 'returns the first records' do
|
243
|
+
result = Bio::Ucsc::GasAcu1::ChromInfo.first
|
244
|
+
pp result
|
245
|
+
result.should be_true
|
246
|
+
end
|
247
|
+
end
|
248
|
+
end
|
249
|
+
|
250
|
+
describe "Bio::Ucsc::GasAcu1::Description" do
|
251
|
+
context ".first" do
|
252
|
+
it 'returns the first records' do
|
253
|
+
result = Bio::Ucsc::GasAcu1::Description.first
|
254
|
+
pp result
|
255
|
+
result.should be_true
|
256
|
+
end
|
257
|
+
end
|
258
|
+
end
|
259
|
+
|
260
|
+
describe "Bio::Ucsc::GasAcu1::Development" do
|
261
|
+
context ".first" do
|
262
|
+
it 'returns the first records' do
|
263
|
+
result = Bio::Ucsc::GasAcu1::Development.first
|
264
|
+
pp result
|
265
|
+
result.should be_true
|
266
|
+
end
|
267
|
+
end
|
268
|
+
end
|
269
|
+
|
270
|
+
describe "Bio::Ucsc::GasAcu1::EnsGene" do
|
271
|
+
context ".first" do
|
272
|
+
it 'returns the first records' do
|
273
|
+
result = Bio::Ucsc::GasAcu1::EnsGene.first
|
274
|
+
pp result
|
275
|
+
result.should be_true
|
276
|
+
end
|
277
|
+
end
|
278
|
+
end
|
279
|
+
|
280
|
+
describe "Bio::Ucsc::GasAcu1::EnsGtp" do
|
281
|
+
context ".first" do
|
282
|
+
it 'returns the first records' do
|
283
|
+
result = Bio::Ucsc::GasAcu1::EnsGtp.first
|
284
|
+
pp result
|
285
|
+
result.should be_true
|
286
|
+
end
|
287
|
+
end
|
288
|
+
end
|
289
|
+
|
290
|
+
describe "Bio::Ucsc::GasAcu1::EnsPep" do
|
291
|
+
context ".first" do
|
292
|
+
it 'returns the first records' do
|
293
|
+
result = Bio::Ucsc::GasAcu1::EnsPep.first
|
294
|
+
pp result
|
295
|
+
result.should be_true
|
296
|
+
end
|
297
|
+
end
|
298
|
+
end
|
299
|
+
|
300
|
+
describe "Bio::Ucsc::GasAcu1::Est" do
|
301
|
+
context ".find_by_interval" do
|
302
|
+
it 'returns the first records' do
|
303
|
+
gi = Bio::GenomicInterval.parse("chrI:1-10,000,000")
|
304
|
+
result = Bio::Ucsc::GasAcu1::Est.find_by_interval gi
|
305
|
+
pp result
|
306
|
+
result.should be_true
|
307
|
+
end
|
308
|
+
end
|
309
|
+
end
|
310
|
+
|
311
|
+
describe "Bio::Ucsc::GasAcu1::EstOrientInfo" do
|
312
|
+
context ".first" do
|
313
|
+
it 'returns the first records' do
|
314
|
+
result = Bio::Ucsc::GasAcu1::EstOrientInfo.first
|
315
|
+
pp result
|
316
|
+
result.should be_true
|
317
|
+
end
|
318
|
+
end
|
319
|
+
end
|
320
|
+
|
321
|
+
describe "Bio::Ucsc::GasAcu1::ExtFile" do
|
322
|
+
context ".first" do
|
323
|
+
it 'returns the first records' do
|
324
|
+
result = Bio::Ucsc::GasAcu1::ExtFile.first
|
325
|
+
pp result
|
326
|
+
result.should be_true
|
327
|
+
end
|
328
|
+
end
|
329
|
+
end
|
330
|
+
|
331
|
+
describe "Bio::Ucsc::GasAcu1::Gap" do
|
332
|
+
context ".first" do
|
333
|
+
it 'returns the first records' do
|
334
|
+
result = Bio::Ucsc::GasAcu1::Gap.first
|
335
|
+
pp result
|
336
|
+
result.should be_true
|
337
|
+
end
|
338
|
+
end
|
339
|
+
end
|
340
|
+
|
341
|
+
describe "Bio::Ucsc::GasAcu1::GbCdnaInfo" do
|
342
|
+
context ".first" do
|
343
|
+
it 'returns the first records' do
|
344
|
+
result = Bio::Ucsc::GasAcu1::GbCdnaInfo.first
|
345
|
+
pp result
|
346
|
+
result.should be_true
|
347
|
+
end
|
348
|
+
end
|
349
|
+
end
|
350
|
+
|
351
|
+
describe "Bio::Ucsc::GasAcu1::GbExtFile" do
|
352
|
+
context ".first" do
|
353
|
+
it 'returns the first records' do
|
354
|
+
result = Bio::Ucsc::GasAcu1::GbExtFile.first
|
355
|
+
pp result
|
356
|
+
result.should be_true
|
357
|
+
end
|
358
|
+
end
|
359
|
+
end
|
360
|
+
|
361
|
+
describe "Bio::Ucsc::GasAcu1::GbLoaded" do
|
362
|
+
context ".first" do
|
363
|
+
it 'returns the first records' do
|
364
|
+
result = Bio::Ucsc::GasAcu1::GbLoaded.first
|
365
|
+
pp result
|
366
|
+
result.should be_true
|
367
|
+
end
|
368
|
+
end
|
369
|
+
end
|
370
|
+
|
371
|
+
describe "Bio::Ucsc::GasAcu1::GbMiscDiff" do
|
372
|
+
context ".first" do
|
373
|
+
it 'returns the first records' do
|
374
|
+
result = Bio::Ucsc::GasAcu1::GbMiscDiff.first
|
375
|
+
pp result
|
376
|
+
result.should be_true
|
377
|
+
end
|
378
|
+
end
|
379
|
+
end
|
380
|
+
|
381
|
+
describe "Bio::Ucsc::GasAcu1::GbSeq" do
|
382
|
+
context ".first" do
|
383
|
+
it 'returns the first records' do
|
384
|
+
result = Bio::Ucsc::GasAcu1::GbSeq.first
|
385
|
+
pp result
|
386
|
+
result.should be_true
|
387
|
+
end
|
388
|
+
end
|
389
|
+
end
|
390
|
+
|
391
|
+
describe "Bio::Ucsc::GasAcu1::GbStatus" do
|
392
|
+
context ".first" do
|
393
|
+
it 'returns the first records' do
|
394
|
+
result = Bio::Ucsc::GasAcu1::GbStatus.first
|
395
|
+
pp result
|
396
|
+
result.should be_true
|
397
|
+
end
|
398
|
+
end
|
399
|
+
end
|
400
|
+
|
401
|
+
describe "Bio::Ucsc::GasAcu1::GbWarn" do
|
402
|
+
context ".first" do
|
403
|
+
it 'returns the first records' do
|
404
|
+
result = Bio::Ucsc::GasAcu1::GbWarn.first
|
405
|
+
pp result
|
406
|
+
result.should be_true
|
407
|
+
end
|
408
|
+
end
|
409
|
+
end
|
410
|
+
|
411
|
+
describe "Bio::Ucsc::GasAcu1::Gc5Base" do
|
412
|
+
context ".first" do
|
413
|
+
it 'returns the first records' do
|
414
|
+
result = Bio::Ucsc::GasAcu1::Gc5Base.first
|
415
|
+
pp result
|
416
|
+
result.should be_true
|
417
|
+
end
|
418
|
+
end
|
419
|
+
end
|
420
|
+
|
421
|
+
describe "Bio::Ucsc::GasAcu1::GeneName" do
|
422
|
+
context ".first" do
|
423
|
+
it 'returns the first records' do
|
424
|
+
result = Bio::Ucsc::GasAcu1::GeneName.first
|
425
|
+
pp result
|
426
|
+
result.should be_true
|
427
|
+
end
|
428
|
+
end
|
429
|
+
end
|
430
|
+
|
431
|
+
describe "Bio::Ucsc::GasAcu1::Gold" do
|
432
|
+
context ".first" do
|
433
|
+
it 'returns the first records' do
|
434
|
+
result = Bio::Ucsc::GasAcu1::Gold.first
|
435
|
+
pp result
|
436
|
+
result.should be_true
|
437
|
+
end
|
438
|
+
end
|
439
|
+
end
|
440
|
+
|
441
|
+
describe "Bio::Ucsc::GasAcu1::Grp" do
|
442
|
+
context ".first" do
|
443
|
+
it 'returns the first records' do
|
444
|
+
result = Bio::Ucsc::GasAcu1::Grp.first
|
445
|
+
pp result
|
446
|
+
result.should be_true
|
447
|
+
end
|
448
|
+
end
|
449
|
+
end
|
450
|
+
|
451
|
+
describe "Bio::Ucsc::GasAcu1::HgFindSpec" do
|
452
|
+
context ".first" do
|
453
|
+
it 'returns the first records' do
|
454
|
+
result = Bio::Ucsc::GasAcu1::HgFindSpec.first
|
455
|
+
pp result
|
456
|
+
result.should be_true
|
457
|
+
end
|
458
|
+
end
|
459
|
+
end
|
460
|
+
|
461
|
+
describe "Bio::Ucsc::GasAcu1::History" do
|
462
|
+
context ".first" do
|
463
|
+
it 'returns the first records' do
|
464
|
+
result = Bio::Ucsc::GasAcu1::History.first
|
465
|
+
pp result
|
466
|
+
result.should be_true
|
467
|
+
end
|
468
|
+
end
|
469
|
+
end
|
470
|
+
|
471
|
+
describe "Bio::Ucsc::GasAcu1::ImageClone" do
|
472
|
+
context ".first" do
|
473
|
+
it 'returns the first records' do
|
474
|
+
result = Bio::Ucsc::GasAcu1::ImageClone.first
|
475
|
+
pp result
|
476
|
+
result.should be_true
|
477
|
+
end
|
478
|
+
end
|
479
|
+
end
|
480
|
+
|
481
|
+
describe "Bio::Ucsc::GasAcu1::IntronEst" do
|
482
|
+
context ".find_by_interval" do
|
483
|
+
it 'returns the first records' do
|
484
|
+
gi = Bio::GenomicInterval.parse("chrI:1-10,000,000")
|
485
|
+
result = Bio::Ucsc::GasAcu1::IntronEst.find_by_interval gi
|
486
|
+
pp result
|
487
|
+
result.should be_true
|
488
|
+
end
|
489
|
+
end
|
490
|
+
end
|
491
|
+
|
492
|
+
describe "Bio::Ucsc::GasAcu1::Keyword" do
|
493
|
+
context ".first" do
|
494
|
+
it 'returns the first records' do
|
495
|
+
result = Bio::Ucsc::GasAcu1::Keyword.first
|
496
|
+
pp result
|
497
|
+
result.should be_true
|
498
|
+
end
|
499
|
+
end
|
500
|
+
end
|
501
|
+
|
502
|
+
describe "Bio::Ucsc::GasAcu1::Library" do
|
503
|
+
context ".first" do
|
504
|
+
it 'returns the first records' do
|
505
|
+
result = Bio::Ucsc::GasAcu1::Library.first
|
506
|
+
pp result
|
507
|
+
result.should be_true
|
508
|
+
end
|
509
|
+
end
|
510
|
+
end
|
511
|
+
|
512
|
+
describe "Bio::Ucsc::GasAcu1::Mrna" do
|
513
|
+
context ".find_by_interval" do
|
514
|
+
it 'returns the first records' do
|
515
|
+
gi = Bio::GenomicInterval.parse("chrI:1-10,000,000")
|
516
|
+
result = Bio::Ucsc::GasAcu1::Mrna.find_by_interval gi
|
517
|
+
pp result
|
518
|
+
result.should be_true
|
519
|
+
end
|
520
|
+
end
|
521
|
+
end
|
522
|
+
|
523
|
+
describe "Bio::Ucsc::GasAcu1::MrnaClone" do
|
524
|
+
context ".first" do
|
525
|
+
it 'returns the first records' do
|
526
|
+
result = Bio::Ucsc::GasAcu1::MrnaClone.first
|
527
|
+
pp result
|
528
|
+
result.should be_true
|
529
|
+
end
|
530
|
+
end
|
531
|
+
end
|
532
|
+
|
533
|
+
describe "Bio::Ucsc::GasAcu1::MrnaOrientInfo" do
|
534
|
+
context ".first" do
|
535
|
+
it 'returns the first records' do
|
536
|
+
result = Bio::Ucsc::GasAcu1::MrnaOrientInfo.first
|
537
|
+
pp result
|
538
|
+
result.should be_true
|
539
|
+
end
|
540
|
+
end
|
541
|
+
end
|
542
|
+
|
543
|
+
describe "Bio::Ucsc::GasAcu1::Multiz8way" do
|
544
|
+
context ".first" do
|
545
|
+
it 'returns the first records' do
|
546
|
+
result = Bio::Ucsc::GasAcu1::Multiz8way.first
|
547
|
+
pp result
|
548
|
+
result.should be_true
|
549
|
+
end
|
550
|
+
end
|
551
|
+
end
|
552
|
+
|
553
|
+
describe "Bio::Ucsc::GasAcu1::Multiz8wayFrames" do
|
554
|
+
context ".first" do
|
555
|
+
it 'returns the first records' do
|
556
|
+
result = Bio::Ucsc::GasAcu1::Multiz8wayFrames.first
|
557
|
+
pp result
|
558
|
+
result.should be_true
|
559
|
+
end
|
560
|
+
end
|
561
|
+
end
|
562
|
+
|
563
|
+
describe "Bio::Ucsc::GasAcu1::Multiz8waySummary" do
|
564
|
+
context ".first" do
|
565
|
+
it 'returns the first records' do
|
566
|
+
result = Bio::Ucsc::GasAcu1::Multiz8waySummary.first
|
567
|
+
pp result
|
568
|
+
result.should be_true
|
569
|
+
end
|
570
|
+
end
|
571
|
+
end
|
572
|
+
|
573
|
+
describe "Bio::Ucsc::GasAcu1::NetAnoCar1" do
|
574
|
+
context ".first" do
|
575
|
+
it 'returns the first records' do
|
576
|
+
result = Bio::Ucsc::GasAcu1::NetAnoCar1.first
|
577
|
+
pp result
|
578
|
+
result.should be_true
|
579
|
+
end
|
580
|
+
end
|
581
|
+
end
|
582
|
+
|
583
|
+
describe "Bio::Ucsc::GasAcu1::NetDanRer7" do
|
584
|
+
context ".first" do
|
585
|
+
it 'returns the first records' do
|
586
|
+
result = Bio::Ucsc::GasAcu1::NetDanRer7.first
|
587
|
+
pp result
|
588
|
+
result.should be_true
|
589
|
+
end
|
590
|
+
end
|
591
|
+
end
|
592
|
+
|
593
|
+
describe "Bio::Ucsc::GasAcu1::NetFr2" do
|
594
|
+
context ".first" do
|
595
|
+
it 'returns the first records' do
|
596
|
+
result = Bio::Ucsc::GasAcu1::NetFr2.first
|
597
|
+
pp result
|
598
|
+
result.should be_true
|
599
|
+
end
|
600
|
+
end
|
601
|
+
end
|
602
|
+
|
603
|
+
describe "Bio::Ucsc::GasAcu1::NetGalGal3" do
|
604
|
+
context ".first" do
|
605
|
+
it 'returns the first records' do
|
606
|
+
result = Bio::Ucsc::GasAcu1::NetGalGal3.first
|
607
|
+
pp result
|
608
|
+
result.should be_true
|
609
|
+
end
|
610
|
+
end
|
611
|
+
end
|
612
|
+
|
613
|
+
describe "Bio::Ucsc::GasAcu1::NetHg19" do
|
614
|
+
context ".first" do
|
615
|
+
it 'returns the first records' do
|
616
|
+
result = Bio::Ucsc::GasAcu1::NetHg19.first
|
617
|
+
pp result
|
618
|
+
result.should be_true
|
619
|
+
end
|
620
|
+
end
|
621
|
+
end
|
622
|
+
|
623
|
+
describe "Bio::Ucsc::GasAcu1::NetMm9" do
|
624
|
+
context ".first" do
|
625
|
+
it 'returns the first records' do
|
626
|
+
result = Bio::Ucsc::GasAcu1::NetMm9.first
|
627
|
+
pp result
|
628
|
+
result.should be_true
|
629
|
+
end
|
630
|
+
end
|
631
|
+
end
|
632
|
+
|
633
|
+
describe "Bio::Ucsc::GasAcu1::NetOryLat2" do
|
634
|
+
context ".first" do
|
635
|
+
it 'returns the first records' do
|
636
|
+
result = Bio::Ucsc::GasAcu1::NetOryLat2.first
|
637
|
+
pp result
|
638
|
+
result.should be_true
|
639
|
+
end
|
640
|
+
end
|
641
|
+
end
|
642
|
+
|
643
|
+
describe "Bio::Ucsc::GasAcu1::NetTetNig2" do
|
644
|
+
context ".first" do
|
645
|
+
it 'returns the first records' do
|
646
|
+
result = Bio::Ucsc::GasAcu1::NetTetNig2.first
|
647
|
+
pp result
|
648
|
+
result.should be_true
|
649
|
+
end
|
650
|
+
end
|
651
|
+
end
|
652
|
+
|
653
|
+
describe "Bio::Ucsc::GasAcu1::NscanGene" do
|
654
|
+
context ".first" do
|
655
|
+
it 'returns the first records' do
|
656
|
+
result = Bio::Ucsc::GasAcu1::NscanGene.first
|
657
|
+
pp result
|
658
|
+
result.should be_true
|
659
|
+
end
|
660
|
+
end
|
661
|
+
end
|
662
|
+
|
663
|
+
describe "Bio::Ucsc::GasAcu1::NscanPep" do
|
664
|
+
context ".first" do
|
665
|
+
it 'returns the first records' do
|
666
|
+
result = Bio::Ucsc::GasAcu1::NscanPep.first
|
667
|
+
pp result
|
668
|
+
result.should be_true
|
669
|
+
end
|
670
|
+
end
|
671
|
+
end
|
672
|
+
|
673
|
+
describe "Bio::Ucsc::GasAcu1::Organism" do
|
674
|
+
context ".first" do
|
675
|
+
it 'returns the first records' do
|
676
|
+
result = Bio::Ucsc::GasAcu1::Organism.first
|
677
|
+
pp result
|
678
|
+
result.should be_true
|
679
|
+
end
|
680
|
+
end
|
681
|
+
end
|
682
|
+
|
683
|
+
describe "Bio::Ucsc::GasAcu1::PhastCons8" do
|
684
|
+
context ".first" do
|
685
|
+
it 'returns the first records' do
|
686
|
+
result = Bio::Ucsc::GasAcu1::PhastCons8.first
|
687
|
+
pp result
|
688
|
+
result.should be_true
|
689
|
+
end
|
690
|
+
end
|
691
|
+
end
|
692
|
+
|
693
|
+
describe "Bio::Ucsc::GasAcu1::PhastConsElements8way" do
|
694
|
+
context ".first" do
|
695
|
+
it 'returns the first records' do
|
696
|
+
result = Bio::Ucsc::GasAcu1::PhastConsElements8way.first
|
697
|
+
pp result
|
698
|
+
result.should be_true
|
699
|
+
end
|
700
|
+
end
|
701
|
+
end
|
702
|
+
|
703
|
+
describe "Bio::Ucsc::GasAcu1::ProductName" do
|
704
|
+
context ".first" do
|
705
|
+
it 'returns the first records' do
|
706
|
+
result = Bio::Ucsc::GasAcu1::ProductName.first
|
707
|
+
pp result
|
708
|
+
result.should be_true
|
709
|
+
end
|
710
|
+
end
|
711
|
+
end
|
712
|
+
|
713
|
+
describe "Bio::Ucsc::GasAcu1::Quality" do
|
714
|
+
context ".first" do
|
715
|
+
it 'returns the first records' do
|
716
|
+
result = Bio::Ucsc::GasAcu1::Quality.first
|
717
|
+
pp result
|
718
|
+
result.should be_true
|
719
|
+
end
|
720
|
+
end
|
721
|
+
end
|
722
|
+
|
723
|
+
describe "Bio::Ucsc::GasAcu1::RefLink" do
|
724
|
+
context ".first" do
|
725
|
+
it 'returns nil (empty table)' do
|
726
|
+
result = Bio::Ucsc::GasAcu1::RefLink.first
|
727
|
+
pp result
|
728
|
+
result.should be_nil # empty table
|
729
|
+
end
|
730
|
+
end
|
731
|
+
end
|
732
|
+
|
733
|
+
describe "Bio::Ucsc::GasAcu1::RefSeqStatus" do
|
734
|
+
context ".first" do
|
735
|
+
it 'returns nil (empty table)' do
|
736
|
+
result = Bio::Ucsc::GasAcu1::RefSeqStatus.first
|
737
|
+
pp result
|
738
|
+
result.should be_nil # empyty table
|
739
|
+
end
|
740
|
+
end
|
741
|
+
end
|
742
|
+
|
743
|
+
describe "Bio::Ucsc::GasAcu1::RefSeqSummary" do
|
744
|
+
context "returns nil (empty table)" do
|
745
|
+
it 'returns the first records' do
|
746
|
+
result = Bio::Ucsc::GasAcu1::RefSeqSummary.first
|
747
|
+
pp result
|
748
|
+
result.should be_nil # empyty table
|
749
|
+
end
|
750
|
+
end
|
751
|
+
end
|
752
|
+
|
753
|
+
describe "Bio::Ucsc::GasAcu1::Rmsk" do
|
754
|
+
context ".find_by_interval" do
|
755
|
+
it 'returns the first records' do
|
756
|
+
gi = Bio::GenomicInterval.parse("chrI:1-10,000,000")
|
757
|
+
result = Bio::Ucsc::GasAcu1::Rmsk.find_by_interval gi
|
758
|
+
pp result
|
759
|
+
result.should be_true
|
760
|
+
end
|
761
|
+
end
|
762
|
+
end
|
763
|
+
|
764
|
+
describe "Bio::Ucsc::GasAcu1::Sex" do
|
765
|
+
context ".first" do
|
766
|
+
it 'returns the first records' do
|
767
|
+
result = Bio::Ucsc::GasAcu1::Sex.first
|
768
|
+
pp result
|
769
|
+
result.should be_true
|
770
|
+
end
|
771
|
+
end
|
772
|
+
end
|
773
|
+
|
774
|
+
describe "Bio::Ucsc::GasAcu1::SimpleRepeat" do
|
775
|
+
context ".first" do
|
776
|
+
it 'returns the first records' do
|
777
|
+
result = Bio::Ucsc::GasAcu1::SimpleRepeat.first
|
778
|
+
pp result
|
779
|
+
result.should be_true
|
780
|
+
end
|
781
|
+
end
|
782
|
+
end
|
783
|
+
|
784
|
+
describe "Bio::Ucsc::GasAcu1::Source" do
|
785
|
+
context ".first" do
|
786
|
+
it 'returns the first records' do
|
787
|
+
result = Bio::Ucsc::GasAcu1::Source.first
|
788
|
+
pp result
|
789
|
+
result.should be_true
|
790
|
+
end
|
791
|
+
end
|
792
|
+
end
|
793
|
+
|
794
|
+
describe "Bio::Ucsc::GasAcu1::TableDescriptions" do
|
795
|
+
context ".first" do
|
796
|
+
it 'returns the first records' do
|
797
|
+
result = Bio::Ucsc::GasAcu1::TableDescriptions.first
|
798
|
+
pp result
|
799
|
+
result.should be_true
|
800
|
+
end
|
801
|
+
end
|
802
|
+
end
|
803
|
+
|
804
|
+
describe "Bio::Ucsc::GasAcu1::Tissue" do
|
805
|
+
context ".first" do
|
806
|
+
it 'returns the first records' do
|
807
|
+
result = Bio::Ucsc::GasAcu1::Tissue.first
|
808
|
+
pp result
|
809
|
+
result.should be_true
|
810
|
+
end
|
811
|
+
end
|
812
|
+
end
|
813
|
+
|
814
|
+
describe "Bio::Ucsc::GasAcu1::TrackDb" do
|
815
|
+
context ".first" do
|
816
|
+
it 'returns the first records' do
|
817
|
+
result = Bio::Ucsc::GasAcu1::TrackDb.first
|
818
|
+
pp result
|
819
|
+
result.should be_true
|
820
|
+
end
|
821
|
+
end
|
822
|
+
end
|
823
|
+
|
824
|
+
describe "Bio::Ucsc::GasAcu1::TransMapAlnMRna" do
|
825
|
+
context ".first" do
|
826
|
+
it 'returns the first records' do
|
827
|
+
result = Bio::Ucsc::GasAcu1::TransMapAlnMRna.first
|
828
|
+
pp result
|
829
|
+
result.should be_true
|
830
|
+
end
|
831
|
+
end
|
832
|
+
end
|
833
|
+
|
834
|
+
describe "Bio::Ucsc::GasAcu1::TransMapAlnRefSeq" do
|
835
|
+
context ".first" do
|
836
|
+
it 'returns the first records' do
|
837
|
+
result = Bio::Ucsc::GasAcu1::TransMapAlnRefSeq.first
|
838
|
+
pp result
|
839
|
+
result.should be_true
|
840
|
+
end
|
841
|
+
end
|
842
|
+
end
|
843
|
+
|
844
|
+
describe "Bio::Ucsc::GasAcu1::TransMapAlnSplicedEst" do
|
845
|
+
context ".first" do
|
846
|
+
it 'returns the first records' do
|
847
|
+
result = Bio::Ucsc::GasAcu1::TransMapAlnSplicedEst.first
|
848
|
+
pp result
|
849
|
+
result.should be_true
|
850
|
+
end
|
851
|
+
end
|
852
|
+
end
|
853
|
+
|
854
|
+
describe "Bio::Ucsc::GasAcu1::TransMapAlnUcscGenes" do
|
855
|
+
context ".first" do
|
856
|
+
it 'returns the first records' do
|
857
|
+
result = Bio::Ucsc::GasAcu1::TransMapAlnUcscGenes.first
|
858
|
+
pp result
|
859
|
+
result.should be_true
|
860
|
+
end
|
861
|
+
end
|
862
|
+
end
|
863
|
+
|
864
|
+
describe "Bio::Ucsc::GasAcu1::TransMapInfoMRna" do
|
865
|
+
context ".first" do
|
866
|
+
it 'returns the first records' do
|
867
|
+
result = Bio::Ucsc::GasAcu1::TransMapInfoMRna.first
|
868
|
+
pp result
|
869
|
+
result.should be_true
|
870
|
+
end
|
871
|
+
end
|
872
|
+
end
|
873
|
+
|
874
|
+
describe "Bio::Ucsc::GasAcu1::TransMapInfoRefSeq" do
|
875
|
+
context ".first" do
|
876
|
+
it 'returns the first records' do
|
877
|
+
result = Bio::Ucsc::GasAcu1::TransMapInfoRefSeq.first
|
878
|
+
pp result
|
879
|
+
result.should be_true
|
880
|
+
end
|
881
|
+
end
|
882
|
+
end
|
883
|
+
|
884
|
+
describe "Bio::Ucsc::GasAcu1::TransMapInfoSplicedEst" do
|
885
|
+
context ".first" do
|
886
|
+
it 'returns the first records' do
|
887
|
+
result = Bio::Ucsc::GasAcu1::TransMapInfoSplicedEst.first
|
888
|
+
pp result
|
889
|
+
result.should be_true
|
890
|
+
end
|
891
|
+
end
|
892
|
+
end
|
893
|
+
|
894
|
+
describe "Bio::Ucsc::GasAcu1::TransMapInfoUcscGenes" do
|
895
|
+
context ".first" do
|
896
|
+
it 'returns the first records' do
|
897
|
+
result = Bio::Ucsc::GasAcu1::TransMapInfoUcscGenes.first
|
898
|
+
pp result
|
899
|
+
result.should be_true
|
900
|
+
end
|
901
|
+
end
|
902
|
+
end
|
903
|
+
|
904
|
+
describe "Bio::Ucsc::GasAcu1::WindowmaskerSdust" do
|
905
|
+
context ".first" do
|
906
|
+
it 'returns the first records' do
|
907
|
+
result = Bio::Ucsc::GasAcu1::WindowmaskerSdust.first
|
908
|
+
pp result
|
909
|
+
result.should be_true
|
910
|
+
end
|
911
|
+
end
|
912
|
+
end
|
913
|
+
|
914
|
+
describe "Bio::Ucsc::GasAcu1::XenoMrna" do
|
915
|
+
context ".first" do
|
916
|
+
it 'returns the first records' do
|
917
|
+
result = Bio::Ucsc::GasAcu1::XenoMrna.first
|
918
|
+
pp result
|
919
|
+
result.should be_true
|
920
|
+
end
|
921
|
+
end
|
922
|
+
end
|
923
|
+
|
924
|
+
end
|