xcoll 0.3.6__py3-none-any.whl → 0.5.0__py3-none-any.whl

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Files changed (350) hide show
  1. xcoll/__init__.py +13 -4
  2. xcoll/beam_elements/__init__.py +14 -6
  3. xcoll/beam_elements/absorber.py +41 -7
  4. xcoll/beam_elements/base.py +1202 -247
  5. xcoll/beam_elements/blowup.py +198 -0
  6. xcoll/beam_elements/elements_src/black_absorber.h +136 -0
  7. xcoll/beam_elements/elements_src/black_crystal.h +129 -0
  8. xcoll/beam_elements/elements_src/blowup.h +42 -0
  9. xcoll/beam_elements/elements_src/emittance_monitor.h +109 -0
  10. xcoll/beam_elements/{collimators_src → elements_src}/everest_block.h +59 -30
  11. xcoll/beam_elements/elements_src/everest_collimator.h +237 -0
  12. xcoll/beam_elements/elements_src/everest_crystal.h +280 -0
  13. xcoll/beam_elements/everest.py +65 -119
  14. xcoll/beam_elements/monitor.py +428 -0
  15. xcoll/colldb.py +276 -747
  16. xcoll/general.py +5 -5
  17. xcoll/headers/checks.h +1 -1
  18. xcoll/headers/particle_states.h +2 -2
  19. xcoll/initial_distribution.py +207 -0
  20. xcoll/install.py +179 -0
  21. xcoll/interaction_record/__init__.py +1 -0
  22. xcoll/interaction_record/interaction_record.py +298 -0
  23. xcoll/interaction_record/interaction_record_src/interaction_record.h +98 -0
  24. xcoll/{impacts → interaction_record}/interaction_types.py +11 -4
  25. xcoll/line_tools.py +82 -0
  26. xcoll/lossmap.py +219 -0
  27. xcoll/manager.py +2 -937
  28. xcoll/rf_sweep.py +1 -1
  29. xcoll/scattering_routines/everest/amorphous.h +232 -0
  30. xcoll/scattering_routines/everest/channeling.h +240 -0
  31. xcoll/scattering_routines/everest/crystal_parameters.h +137 -0
  32. xcoll/scattering_routines/everest/everest.h +11 -30
  33. xcoll/scattering_routines/everest/everest.py +13 -10
  34. xcoll/scattering_routines/everest/jaw.h +28 -197
  35. xcoll/scattering_routines/everest/materials.py +37 -15
  36. xcoll/scattering_routines/everest/multiple_coulomb_scattering.h +31 -10
  37. xcoll/scattering_routines/everest/nuclear_interaction.h +86 -0
  38. xcoll/scattering_routines/everest/properties.h +6 -1
  39. xcoll/scattering_routines/fluka/flukaio/lib/libFlukaIO64.a +0 -0
  40. xcoll/scattering_routines/geant4/collimasim/.git +1 -0
  41. xcoll/scattering_routines/geant4/collimasim/.gitignore +12 -0
  42. xcoll/scattering_routines/geant4/collimasim/.gitmodules +3 -0
  43. xcoll/scattering_routines/geant4/collimasim/CMakeLists.txt +26 -0
  44. xcoll/scattering_routines/geant4/collimasim/README.md +21 -0
  45. xcoll/scattering_routines/geant4/collimasim/docs/Makefile +20 -0
  46. xcoll/scattering_routines/geant4/collimasim/docs/make.bat +35 -0
  47. xcoll/scattering_routines/geant4/collimasim/docs/source/collimasim.rst +10 -0
  48. xcoll/scattering_routines/geant4/collimasim/docs/source/conf.py +59 -0
  49. xcoll/scattering_routines/geant4/collimasim/docs/source/index.rst +26 -0
  50. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.appveyor.yml +37 -0
  51. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.clang-format +19 -0
  52. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.clang-tidy +65 -0
  53. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.cmake-format.yaml +73 -0
  54. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.git +1 -0
  55. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/CODEOWNERS +9 -0
  56. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/CONTRIBUTING.md +386 -0
  57. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/ISSUE_TEMPLATE/bug-report.yml +45 -0
  58. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/ISSUE_TEMPLATE/config.yml +8 -0
  59. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/dependabot.yml +16 -0
  60. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/labeler.yml +8 -0
  61. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/labeler_merged.yml +3 -0
  62. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/pull_request_template.md +19 -0
  63. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/workflows/ci.yml +969 -0
  64. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/workflows/configure.yml +84 -0
  65. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/workflows/format.yml +48 -0
  66. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/workflows/labeler.yml +16 -0
  67. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/workflows/pip.yml +103 -0
  68. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.gitignore +45 -0
  69. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.pre-commit-config.yaml +151 -0
  70. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.readthedocs.yml +3 -0
  71. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/CMakeLists.txt +297 -0
  72. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/LICENSE +29 -0
  73. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/MANIFEST.in +6 -0
  74. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/README.rst +180 -0
  75. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/Doxyfile +23 -0
  76. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/Makefile +192 -0
  77. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/_static/theme_overrides.css +11 -0
  78. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/cast/chrono.rst +81 -0
  79. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/cast/custom.rst +93 -0
  80. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/cast/eigen.rst +310 -0
  81. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/cast/functional.rst +109 -0
  82. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/cast/index.rst +43 -0
  83. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/cast/overview.rst +171 -0
  84. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/cast/stl.rst +251 -0
  85. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/cast/strings.rst +305 -0
  86. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/classes.rst +1297 -0
  87. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/embedding.rst +262 -0
  88. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/exceptions.rst +396 -0
  89. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/functions.rst +568 -0
  90. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/misc.rst +337 -0
  91. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/pycpp/index.rst +13 -0
  92. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/pycpp/numpy.rst +463 -0
  93. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/pycpp/object.rst +286 -0
  94. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/pycpp/utilities.rst +155 -0
  95. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/smart_ptrs.rst +174 -0
  96. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/basics.rst +308 -0
  97. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/benchmark.py +91 -0
  98. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/benchmark.rst +95 -0
  99. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/changelog.rst +2050 -0
  100. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/classes.rst +542 -0
  101. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/cmake/index.rst +8 -0
  102. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/compiling.rst +648 -0
  103. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/conf.py +381 -0
  104. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/faq.rst +343 -0
  105. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/index.rst +48 -0
  106. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/installing.rst +105 -0
  107. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/limitations.rst +72 -0
  108. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/pybind11-logo.png +0 -0
  109. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/pybind11_vs_boost_python1.png +0 -0
  110. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/pybind11_vs_boost_python1.svg +427 -0
  111. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/pybind11_vs_boost_python2.png +0 -0
  112. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/pybind11_vs_boost_python2.svg +427 -0
  113. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/reference.rst +130 -0
  114. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/release.rst +96 -0
  115. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/requirements.txt +8 -0
  116. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/upgrade.rst +548 -0
  117. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/attr.h +605 -0
  118. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/buffer_info.h +144 -0
  119. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/cast.h +1432 -0
  120. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/chrono.h +213 -0
  121. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/common.h +2 -0
  122. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/complex.h +65 -0
  123. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/detail/class.h +709 -0
  124. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/detail/common.h +1021 -0
  125. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/detail/descr.h +104 -0
  126. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/detail/init.h +346 -0
  127. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/detail/internals.h +467 -0
  128. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/detail/type_caster_base.h +978 -0
  129. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/detail/typeid.h +55 -0
  130. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/eigen.h +606 -0
  131. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/embed.h +284 -0
  132. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/eval.h +163 -0
  133. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/functional.h +121 -0
  134. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/gil.h +193 -0
  135. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/iostream.h +275 -0
  136. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/numpy.h +1741 -0
  137. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/operators.h +163 -0
  138. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/options.h +65 -0
  139. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/pybind11.h +2497 -0
  140. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/pytypes.h +1879 -0
  141. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/stl/filesystem.h +103 -0
  142. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/stl.h +375 -0
  143. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/stl_bind.h +747 -0
  144. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/noxfile.py +88 -0
  145. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/pybind11/__init__.py +11 -0
  146. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/pybind11/__main__.py +52 -0
  147. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/pybind11/_version.py +12 -0
  148. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/pybind11/_version.pyi +6 -0
  149. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/pybind11/commands.py +21 -0
  150. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/pybind11/py.typed +0 -0
  151. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/pybind11/setup_helpers.py +482 -0
  152. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/pybind11/setup_helpers.pyi +63 -0
  153. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/pyproject.toml +41 -0
  154. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/setup.cfg +56 -0
  155. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/setup.py +155 -0
  156. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/CMakeLists.txt +503 -0
  157. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/conftest.py +208 -0
  158. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/constructor_stats.h +275 -0
  159. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/cross_module_gil_utils.cpp +73 -0
  160. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/env.py +33 -0
  161. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/extra_python_package/pytest.ini +0 -0
  162. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/extra_python_package/test_files.py +279 -0
  163. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/extra_setuptools/pytest.ini +0 -0
  164. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/extra_setuptools/test_setuphelper.py +143 -0
  165. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/local_bindings.h +85 -0
  166. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/object.h +179 -0
  167. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/pybind11_cross_module_tests.cpp +151 -0
  168. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/pybind11_tests.cpp +91 -0
  169. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/pybind11_tests.h +85 -0
  170. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/pytest.ini +19 -0
  171. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/requirements.txt +12 -0
  172. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_async.cpp +26 -0
  173. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_async.py +25 -0
  174. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_buffers.cpp +216 -0
  175. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_buffers.py +163 -0
  176. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_builtin_casters.cpp +286 -0
  177. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_builtin_casters.py +536 -0
  178. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_call_policies.cpp +107 -0
  179. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_call_policies.py +248 -0
  180. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_callbacks.cpp +227 -0
  181. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_callbacks.py +202 -0
  182. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_chrono.cpp +84 -0
  183. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_chrono.py +210 -0
  184. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_class.cpp +550 -0
  185. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_class.py +473 -0
  186. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_cmake_build/CMakeLists.txt +84 -0
  187. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_cmake_build/embed.cpp +21 -0
  188. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_cmake_build/installed_embed/CMakeLists.txt +28 -0
  189. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_cmake_build/installed_function/CMakeLists.txt +39 -0
  190. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_cmake_build/installed_target/CMakeLists.txt +46 -0
  191. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_cmake_build/main.cpp +6 -0
  192. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_cmake_build/subdirectory_embed/CMakeLists.txt +41 -0
  193. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_cmake_build/subdirectory_function/CMakeLists.txt +35 -0
  194. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_cmake_build/subdirectory_target/CMakeLists.txt +41 -0
  195. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_cmake_build/test.py +10 -0
  196. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_constants_and_functions.cpp +165 -0
  197. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_constants_and_functions.py +53 -0
  198. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_copy_move.cpp +238 -0
  199. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_copy_move.py +126 -0
  200. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_custom_type_casters.cpp +141 -0
  201. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_custom_type_casters.py +117 -0
  202. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_custom_type_setup.cpp +41 -0
  203. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_custom_type_setup.py +50 -0
  204. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_docstring_options.cpp +69 -0
  205. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_docstring_options.py +42 -0
  206. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_eigen.cpp +348 -0
  207. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_eigen.py +771 -0
  208. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_embed/CMakeLists.txt +47 -0
  209. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_embed/catch.cpp +22 -0
  210. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_embed/external_module.cpp +23 -0
  211. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_embed/test_interpreter.cpp +326 -0
  212. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_embed/test_interpreter.py +15 -0
  213. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_enum.cpp +148 -0
  214. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_enum.py +272 -0
  215. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_eval.cpp +119 -0
  216. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_eval.py +51 -0
  217. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_eval_call.py +5 -0
  218. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_exceptions.cpp +285 -0
  219. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_exceptions.h +12 -0
  220. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_exceptions.py +265 -0
  221. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_factory_constructors.cpp +397 -0
  222. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_factory_constructors.py +520 -0
  223. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_gil_scoped.cpp +49 -0
  224. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_gil_scoped.py +94 -0
  225. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_iostream.cpp +125 -0
  226. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_iostream.py +331 -0
  227. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_kwargs_and_defaults.cpp +153 -0
  228. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_kwargs_and_defaults.py +284 -0
  229. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_local_bindings.cpp +107 -0
  230. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_local_bindings.py +257 -0
  231. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_methods_and_attributes.cpp +412 -0
  232. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_methods_and_attributes.py +517 -0
  233. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_modules.cpp +102 -0
  234. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_modules.py +92 -0
  235. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_multiple_inheritance.cpp +233 -0
  236. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_multiple_inheritance.py +360 -0
  237. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_numpy_array.cpp +472 -0
  238. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_numpy_array.py +593 -0
  239. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_numpy_dtypes.cpp +524 -0
  240. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_numpy_dtypes.py +441 -0
  241. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_numpy_vectorize.cpp +103 -0
  242. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_numpy_vectorize.py +267 -0
  243. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_opaque_types.cpp +73 -0
  244. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_opaque_types.py +59 -0
  245. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_operator_overloading.cpp +235 -0
  246. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_operator_overloading.py +146 -0
  247. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_pickling.cpp +189 -0
  248. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_pickling.py +82 -0
  249. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_pytypes.cpp +560 -0
  250. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_pytypes.py +651 -0
  251. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_sequences_and_iterators.cpp +500 -0
  252. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_sequences_and_iterators.py +253 -0
  253. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_smart_ptr.cpp +452 -0
  254. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_smart_ptr.py +318 -0
  255. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_stl.cpp +342 -0
  256. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_stl.py +291 -0
  257. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_stl_binders.cpp +131 -0
  258. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_stl_binders.py +318 -0
  259. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_tagbased_polymorphic.cpp +144 -0
  260. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_tagbased_polymorphic.py +29 -0
  261. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_thread.cpp +66 -0
  262. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_thread.py +44 -0
  263. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_union.cpp +22 -0
  264. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_union.py +9 -0
  265. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_virtual_functions.cpp +510 -0
  266. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_virtual_functions.py +408 -0
  267. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/valgrind-numpy-scipy.supp +140 -0
  268. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/valgrind-python.supp +117 -0
  269. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/FindCatch.cmake +70 -0
  270. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/FindEigen3.cmake +86 -0
  271. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/FindPythonLibsNew.cmake +257 -0
  272. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/check-style.sh +44 -0
  273. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/cmake_uninstall.cmake.in +23 -0
  274. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/libsize.py +39 -0
  275. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/make_changelog.py +64 -0
  276. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/pybind11Common.cmake +402 -0
  277. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/pybind11Config.cmake.in +233 -0
  278. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/pybind11NewTools.cmake +276 -0
  279. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/pybind11Tools.cmake +214 -0
  280. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/pyproject.toml +3 -0
  281. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/setup_global.py.in +65 -0
  282. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/setup_main.py.in +41 -0
  283. xcoll/scattering_routines/geant4/collimasim/pyproject.toml +8 -0
  284. xcoll/scattering_routines/geant4/collimasim/setup.py +144 -0
  285. xcoll/scattering_routines/geant4/collimasim/src/collimasim/BDSPyATInterface.cpp +403 -0
  286. xcoll/scattering_routines/geant4/collimasim/src/collimasim/BDSPyATInterface.hh +100 -0
  287. xcoll/scattering_routines/geant4/collimasim/src/collimasim/BDSXtrackInterface.cpp +763 -0
  288. xcoll/scattering_routines/geant4/collimasim/src/collimasim/BDSXtrackInterface.hh +118 -0
  289. xcoll/scattering_routines/geant4/collimasim/src/collimasim/__init__.py +8 -0
  290. xcoll/scattering_routines/geant4/collimasim/src/collimasim/bindings.cpp +63 -0
  291. xcoll/scattering_routines/geant4/collimasim/src/collimasim/pyCollimatorPass.py +142 -0
  292. xcoll/scattering_routines/geant4/collimasim/src/collimasim/xtrack_collimator.py +556 -0
  293. xcoll/scattering_routines/geant4/collimasim/src/collimasim.egg-info/PKG-INFO +6 -0
  294. xcoll/scattering_routines/geant4/collimasim/src/collimasim.egg-info/SOURCES.txt +24 -0
  295. xcoll/scattering_routines/geant4/collimasim/src/collimasim.egg-info/dependency_links.txt +1 -0
  296. xcoll/scattering_routines/geant4/collimasim/src/collimasim.egg-info/not-zip-safe +1 -0
  297. xcoll/scattering_routines/geant4/collimasim/src/collimasim.egg-info/top_level.txt +1 -0
  298. xcoll/scattering_routines/geant4/collimasim/tests/README.md +25 -0
  299. xcoll/scattering_routines/geant4/collimasim/tests/resources/CollDB_forions.dat +25 -0
  300. xcoll/scattering_routines/geant4/collimasim/tests/resources/CollDB_new_example.dat +18 -0
  301. xcoll/scattering_routines/geant4/collimasim/tests/resources/CollDB_old_example.dat +68 -0
  302. xcoll/scattering_routines/geant4/collimasim/tests/resources/CollDB_testing.dat +15 -0
  303. xcoll/scattering_routines/geant4/collimasim/tests/resources/CollDB_yaml_example.yaml +110 -0
  304. xcoll/scattering_routines/geant4/collimasim/tests/resources/collgaps.dat +7 -0
  305. xcoll/scattering_routines/geant4/collimasim/tests/resources/collgaps_pyat_test.dat +3 -0
  306. xcoll/scattering_routines/geant4/collimasim/tests/resources/collonly_twiss_file_example.tfs +54 -0
  307. xcoll/scattering_routines/geant4/collimasim/tests/resources/settings.gmad +3 -0
  308. xcoll/scattering_routines/geant4/collimasim/tests/resources/settings_black_absorber.gmad +3 -0
  309. xcoll/scattering_routines/geant4/collimasim/tests/resources/settings_ions.gmad +5 -0
  310. xcoll/scattering_routines/geant4/collimasim/tests/resources/twiss_file_testing.tfs +51 -0
  311. xcoll/scattering_routines/geant4/collimasim/tests/test_pyat.py +65 -0
  312. xcoll/scattering_routines/geant4/collimasim/tests/test_pyat_passmethod.py +59 -0
  313. xcoll/scattering_routines/geant4/collimasim/tests/test_pyat_tracking.py +102 -0
  314. xcoll/scattering_routines/geant4/collimasim/tests/test_xtrack.py +75 -0
  315. xcoll/scattering_routines/geant4/collimasim/tests/test_xtrack_angle.py +74 -0
  316. xcoll/scattering_routines/geant4/collimasim/tests/test_xtrack_colldb_load.py +84 -0
  317. xcoll/scattering_routines/geant4/collimasim/tests/test_xtrack_interaction.py +159 -0
  318. xcoll/scattering_routines/geant4/collimasim/tests/test_xtrack_interaction_ion.py +99 -0
  319. xcoll/scattering_routines/geant4/collimasim/tests/test_xtrack_ions.py +78 -0
  320. xcoll/scattering_routines/geant4/collimasim/tests/test_xtrack_lost_energy.py +88 -0
  321. xcoll/scattering_routines/geant4/collimasim/tests/test_xtrack_tilt.py +80 -0
  322. xcoll/scattering_routines/geant4/collimasim/tests/test_xtrack_tracking.py +97 -0
  323. xcoll/scattering_routines/geant4/collimasim/tests/test_xtrack_tracking_ions.py +96 -0
  324. xcoll/scattering_routines/geometry/__init__.py +6 -0
  325. xcoll/scattering_routines/geometry/collimator_geometry.h +218 -0
  326. xcoll/scattering_routines/geometry/crystal_geometry.h +153 -0
  327. xcoll/scattering_routines/geometry/geometry.py +26 -0
  328. xcoll/scattering_routines/geometry/get_s.h +92 -0
  329. xcoll/scattering_routines/geometry/methods.h +111 -0
  330. xcoll/scattering_routines/geometry/objects.h +154 -0
  331. xcoll/scattering_routines/geometry/rotation.h +23 -0
  332. xcoll/scattering_routines/geometry/segments.h +226 -0
  333. xcoll/scattering_routines/geometry/sort.h +184 -0
  334. {xcoll-0.3.6.dist-info → xcoll-0.5.0.dist-info}/METADATA +1 -1
  335. xcoll-0.5.0.dist-info/RECORD +413 -0
  336. xcoll/beam_elements/collimators_src/absorber.h +0 -141
  337. xcoll/beam_elements/collimators_src/everest_collimator.h +0 -142
  338. xcoll/beam_elements/collimators_src/everest_crystal.h +0 -115
  339. xcoll/collimator_settings.py +0 -457
  340. xcoll/impacts/__init__.py +0 -1
  341. xcoll/impacts/impacts.py +0 -102
  342. xcoll/impacts/impacts_src/impacts.h +0 -99
  343. xcoll/scattering_routines/everest/crystal.h +0 -1302
  344. xcoll/scattering_routines/everest/scatter.h +0 -169
  345. xcoll/scattering_routines/everest/scatter_crystal.h +0 -260
  346. xcoll/scattering_routines/fluka/build_fluka_input.py +0 -58
  347. xcoll-0.3.6.dist-info/RECORD +0 -111
  348. {xcoll-0.3.6.dist-info → xcoll-0.5.0.dist-info}/LICENSE +0 -0
  349. {xcoll-0.3.6.dist-info → xcoll-0.5.0.dist-info}/NOTICE +0 -0
  350. {xcoll-0.3.6.dist-info → xcoll-0.5.0.dist-info}/WHEEL +0 -0
@@ -0,0 +1,130 @@
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+ .. _reference:
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+
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+ .. warning::
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+
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+ Please be advised that the reference documentation discussing pybind11
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+ internals is currently incomplete. Please refer to the previous sections
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+ and the pybind11 header files for the nitty gritty details.
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+
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+ Reference
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+ #########
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+
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+ .. _macros:
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+
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+ Macros
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+ ======
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+
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+ .. doxygendefine:: PYBIND11_MODULE
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+
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+ .. _core_types:
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+
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+ Convenience classes for arbitrary Python types
22
+ ==============================================
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+
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+ Common member functions
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+ -----------------------
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+
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+ .. doxygenclass:: object_api
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+ :members:
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+
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+ Without reference counting
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+ --------------------------
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+
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+ .. doxygenclass:: handle
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+ :members:
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+
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+ With reference counting
37
+ -----------------------
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+
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+ .. doxygenclass:: object
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+ :members:
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+
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+ .. doxygenfunction:: reinterpret_borrow
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+
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+ .. doxygenfunction:: reinterpret_steal
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+
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+ Convenience classes for specific Python types
47
+ =============================================
48
+
49
+ .. doxygenclass:: module_
50
+ :members:
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+
52
+ .. doxygengroup:: pytypes
53
+ :members:
54
+
55
+ Convenience functions converting to Python types
56
+ ================================================
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+
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+ .. doxygenfunction:: make_tuple(Args&&...)
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+
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+ .. doxygenfunction:: make_iterator(Iterator, Sentinel, Extra &&...)
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+ .. doxygenfunction:: make_iterator(Type &, Extra&&...)
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+
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+ .. doxygenfunction:: make_key_iterator(Iterator, Sentinel, Extra &&...)
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+ .. doxygenfunction:: make_key_iterator(Type &, Extra&&...)
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+
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+ .. doxygenfunction:: make_value_iterator(Iterator, Sentinel, Extra &&...)
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+ .. doxygenfunction:: make_value_iterator(Type &, Extra&&...)
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+
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+ .. _extras:
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+
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+ Passing extra arguments to ``def`` or ``class_``
72
+ ================================================
73
+
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+ .. doxygengroup:: annotations
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+ :members:
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+
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+ Embedding the interpreter
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+ =========================
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+
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+ .. doxygendefine:: PYBIND11_EMBEDDED_MODULE
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+
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+ .. doxygenfunction:: initialize_interpreter
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+
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+ .. doxygenfunction:: finalize_interpreter
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+
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+ .. doxygenclass:: scoped_interpreter
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+
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+ Redirecting C++ streams
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+ =======================
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+
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+ .. doxygenclass:: scoped_ostream_redirect
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+
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+ .. doxygenclass:: scoped_estream_redirect
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+
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+ .. doxygenfunction:: add_ostream_redirect
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+
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+ Python built-in functions
98
+ =========================
99
+
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+ .. doxygengroup:: python_builtins
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+ :members:
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+
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+ Inheritance
104
+ ===========
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+
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+ See :doc:`/classes` and :doc:`/advanced/classes` for more detail.
107
+
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+ .. doxygendefine:: PYBIND11_OVERRIDE
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+
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+ .. doxygendefine:: PYBIND11_OVERRIDE_PURE
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+
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+ .. doxygendefine:: PYBIND11_OVERRIDE_NAME
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+
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+ .. doxygendefine:: PYBIND11_OVERRIDE_PURE_NAME
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+
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+ .. doxygenfunction:: get_override
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+
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+ Exceptions
119
+ ==========
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+
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+ .. doxygenclass:: error_already_set
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+ :members:
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+
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+ .. doxygenclass:: builtin_exception
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+ :members:
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+
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+ Literals
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+ ========
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+
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+ .. doxygennamespace:: literals
@@ -0,0 +1,96 @@
1
+ On version numbers
2
+ ^^^^^^^^^^^^^^^^^^
3
+
4
+ The two version numbers (C++ and Python) must match when combined (checked when
5
+ you build the PyPI package), and must be a valid `PEP 440
6
+ <https://www.python.org/dev/peps/pep-0440>`_ version when combined.
7
+
8
+ For example:
9
+
10
+ .. code-block:: C++
11
+
12
+ #define PYBIND11_VERSION_MAJOR X
13
+ #define PYBIND11_VERSION_MINOR Y
14
+ #define PYBIND11_VERSION_PATCH Z.dev1
15
+
16
+ For beta, ``PYBIND11_VERSION_PATCH`` should be ``Z.b1``. RC's can be ``Z.rc1``.
17
+ Always include the dot (even though PEP 440 allows it to be dropped). For a
18
+ final release, this must be a simple integer. There is also a HEX version of
19
+ the version just below.
20
+
21
+
22
+ To release a new version of pybind11:
23
+ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
24
+
25
+ - Update the version number
26
+ - Update ``PYBIND11_VERSION_MAJOR`` etc. in
27
+ ``include/pybind11/detail/common.h``. PATCH should be a simple integer.
28
+ - Update the version HEX just below, as well.
29
+ - Update ``pybind11/_version.py`` (match above)
30
+ - Run ``nox -s tests_packaging``` to ensure this was done correctly.
31
+ - Ensure that all the information in ``setup.cfg`` is up-to-date, like
32
+ supported Python versions.
33
+ - Add release date in ``docs/changelog.rst``.
34
+ - Check to make sure
35
+ `needs-changelog <https://github.com/pybind/pybind11/pulls?q=is%3Apr+is%3Aclosed+label%3A%22needs+changelog%22>`_
36
+ issues are entered in the changelog (clear the label when done).
37
+ - ``git add`` and ``git commit``, ``git push``. **Ensure CI passes**. (If it
38
+ fails due to a known flake issue, either ignore or restart CI.)
39
+ - Add a release branch if this is a new minor version, or update the existing release branch if it is a patch version
40
+ - New branch: ``git checkout -b vX.Y``, ``git push -u origin vX.Y``
41
+ - Update branch: ``git checkout vX.Y``, ``git merge <release branch>``, ``git push``
42
+ - Update tags (optional; if you skip this, the GitHub release makes a
43
+ non-annotated tag for you)
44
+ - ``git tag -a vX.Y.Z -m 'vX.Y.Z release'``.
45
+ - ``git push --tags``.
46
+ - Update stable
47
+ - ``git checkout stable``
48
+ - ``git merge master``
49
+ - ``git push``
50
+ - Make a GitHub release (this shows up in the UI, sends new release
51
+ notifications to users watching releases, and also uploads PyPI packages).
52
+ (Note: if you do not use an existing tag, this creates a new lightweight tag
53
+ for you, so you could skip the above step).
54
+ - GUI method: click "Create a new release" on the far right, fill in the tag
55
+ name (if you didn't tag above, it will be made here), fill in a release
56
+ name like "Version X.Y.Z", and optionally copy-and-paste the changelog into
57
+ the description (processed as markdown by Pandoc). Check "pre-release" if
58
+ this is a beta/RC. You can get partway there with
59
+ ``cat docs/changelog.rst | pandoc -f rst -t gfm``.
60
+ - CLI method: with ``gh`` installed, run ``gh release create vX.Y.Z -t "Version X.Y.Z"``
61
+ If this is a pre-release, add ``-p``.
62
+
63
+ - Get back to work
64
+ - Make sure you are on master, not somewhere else: ``git checkout master``
65
+ - Update version macros in ``include/pybind11/detail/common.h`` (set PATCH to
66
+ ``0.dev1`` and increment MINOR).
67
+ - Update ``_version.py`` to match
68
+ - Run ``nox -s tests_packaging``` to ensure this was done correctly.
69
+ - Add a spot for in-development updates in ``docs/changelog.rst``.
70
+ - ``git add``, ``git commit``, ``git push``
71
+
72
+ If a version branch is updated, remember to set PATCH to ``1.dev1``.
73
+
74
+ If you'd like to bump homebrew, run:
75
+
76
+ .. code-block::
77
+
78
+ brew bump-formula-pr --url https://github.com/pybind/pybind11/archive/vX.Y.Z.tar.gz
79
+
80
+ Conda-forge should automatically make a PR in a few hours, and automatically
81
+ merge it if there are no issues.
82
+
83
+
84
+ Manual packaging
85
+ ^^^^^^^^^^^^^^^^
86
+
87
+ If you need to manually upload releases, you can download the releases from the job artifacts and upload them with twine. You can also make the files locally (not recommended in general, as your local directory is more likely to be "dirty" and SDists love picking up random unrelated/hidden files); this is the procedure:
88
+
89
+ .. code-block:: bash
90
+
91
+ python3 -m pip install build
92
+ python3 -m build
93
+ PYBIND11_SDIST_GLOBAL=1 python3 -m build
94
+ twine upload dist/*
95
+
96
+ This makes SDists and wheels, and the final line uploads them.
@@ -0,0 +1,8 @@
1
+ breathe==4.26.1
2
+ # docutils 0.17 breaks HTML tags & RTD theme
3
+ # https://github.com/sphinx-doc/sphinx/issues/9001
4
+ docutils==0.16
5
+ sphinx==3.3.1
6
+ sphinx_rtd_theme==0.5.0
7
+ sphinxcontrib-moderncmakedomain==3.17
8
+ sphinxcontrib-svg2pdfconverter==1.1.0