tsadmetrics 0.1.17__py3-none-any.whl → 1.0.0__py3-none-any.whl

tsadmetrics/_tsadeval/eTaPR_pkg/DataManage/File_IO.py

@@ -1,175 +0,0 @@
-from .Range import Range
-import time
-import datetime
-import pandas as pd
-
-def load_stream_2_range(stream_data: list, normal_label: int, anomaly_label: int, is_range_name: bool) -> list:
-    return_list = []
-    start_id = -1
-    end_id = -1
-    id = 0
-    range_id = 1
-
-    prev_val = -2 #Set prev_val as a value different to normal and anomalous labels
-
-    for val in stream_data:
-        if val == anomaly_label and (prev_val == normal_label or prev_val == -2): #Enter the anomaly range
-            start_id = id
-        elif val == normal_label and prev_val == anomaly_label: #Go out the anomaly range
-            name_buf = ''
-            if is_range_name:
-                name_buf = str(range_id)
-            end_id = id - 1
-            return_list.append(Range(start_id, end_id, name_buf))
-            range_id += 1
-            #start_id = 0
-
-        id += 1
-        prev_val = val
-    if start_id > end_id: #start_id != 0 and start_id != -1: #if an anomaly continues till the last point
-        return_list.append(Range.Range(start_id, id - 1, str(range_id)))
-
-    return return_list
-
-
-def load_stream_file(filename: str, normal_label: int, anomaly_label: int, is_range_name: bool) -> list:
-    return_list = []
-    start_id = -1
-    end_id = -1
-    id = 0
-    range_id = 1
-    #is_first = True
-
-    prev_val = -2 #Set prev_val as a value different to normal and anomalous labels
-
-    f = open(filename, 'r', encoding='utf-8', newline='')
-
-    for line in f.readlines():
-        val = int(line.strip().split()[0])
-
-        '''
-        #skip the first line
-        if is_first:
-            if val == anomaly_label:
-                start_id = id
-            prev_val = val
-            is_first = False
-            continue
-        '''
-
-        if val == anomaly_label and (prev_val == normal_label or prev_val == -2): #Enter the anomaly range
-            start_id = id
-        elif val == normal_label and prev_val == anomaly_label: #Go out the anomaly range
-            name_buf = ''
-            if is_range_name:
-                name_buf = str(range_id)
-            end_id = id - 1
-            return_list.append(Range.Range(start_id, end_id, name_buf))
-            range_id += 1
-            #start_id = 0
-
-        id += 1
-        prev_val = val
-    f.close()
-    if start_id > end_id: #start_id != 0 and start_id != -1: #if an anomaly continues till the last point
-        return_list.append(Range.Range(start_id, id - 1, str(range_id)))
-
-    return return_list
-
-def load_range_file(filename: str, time_format: str) -> list:
-    return_list = []
-    #is_first = True
-
-    f = open(filename, 'r', encoding='utf-8', newline='')
-    for line in f.readlines():
-        # skip the first line
-        #if is_first:
-            #is_first = False
-            #continue
-
-        items = line.strip().split(',')
-        if time_format == 'index':
-            first_idx = int(items[0])
-            last_idx = int(items[1])
-        else:
-            first_idx = string_to_unixtime(items[0], time_format)
-            last_idx = string_to_unixtime(items[1], time_format)
-
-        name_buf = ''
-        if len(items) > 2:
-            name_buf = str(items[2])
-
-        return_list.append(Range.Range(first_idx, last_idx, name_buf))
-    f.close()
-
-    for idx in range(1, len(return_list)):
-        if return_list[idx].get_time()[0] <= return_list[idx-1].get_time()[1]:
-            print("Error: ranges ({},{}) and ({},{}) are overlapped in {}".format(return_list[idx-1].get_time()[0],
-                                                                                  return_list[idx-1].get_time()[1],
-                                                                                  return_list[idx].get_time()[0],
-                                                                                  return_list[idx].get_time()[1], filename))
-            exit(0)
-
-    return return_list
-
-
-def unixtime_to_string(epoch: int, format: str) -> str:
-    return datetime.datetime.fromtimestamp(epoch).strftime(format) #'%Y-%m-%d %I:%M:%S %p'
-
-
-def string_to_unixtime(timestamp: str, format: str) -> int:
-    return int(time.mktime(datetime.datetime.strptime(timestamp, format).timetuple()))
-
-
-def save_range_list(filename: str, range_list: list) -> None:
-    f = open(filename, encoding='utf-8', mode='w')
-    for single_range in range_list:
-        first, last = single_range.get_time()
-        f.writelines(str(first)+','+str(last)+','+single_range.get_name()+'\n')
-    f.close()
-
-# Assume that the first line of input files including the information of file format and its corresponding information
-# This function handles three types of file format
-def load_file(filename: str, filetype: str) -> list:
-    assert(filetype == 'range' or filetype == 'stream')
-
-    if filetype == 'stream':
-        return load_stream_file(filename, 1, -1, True)
-    elif filetype == 'range':
-        return load_range_file(filename, 'index')
-
-
-def make_attack_file(input_files: list, sep: str, label_featname: str, input_normal_label: int, input_anomalous_label: int,
-                     output_stream_file: str, output_range_file: str, output_normal_label: int, output_anomalous_label: int) -> None:
-    label = []
-    for an_input_file in input_files:
-        temp_file = pd.read_csv(an_input_file, sep=sep)
-        label += temp_file[label_featname].values.tolist()
-
-    with open(output_stream_file, 'w') as f:
-        for a_label in label:
-            if a_label == input_normal_label:
-                f.write('{}\n'.format(output_normal_label))
-            elif a_label == input_anomalous_label:
-                f.write('{}\n'.format(output_anomalous_label))
-            else:
-                print("There is an unknown label, " + a_label, flush=True)
-                f.close()
-                return
-
-    ranges = load_stream_2_range(label, 0, 1, False)
-    save_range_list(output_range_file, ranges)
-
-def save_range_2_stream(filename: str, range_list: list, last_idx: int, normal_label: int, anomalous_label: int) -> None:
-    f = open(filename, encoding='utf-8', mode='w')
-    range_id = 0
-    for idx in range(last_idx):
-        if idx < range_list[range_id].get_time()[0]:
-            f.writelines('{}\n'.format(normal_label))
-        elif range_list[range_id].get_time()[0] <= idx <= range_list[range_id].get_time()[1]:
-            f.writelines('{}\n'.format(anomalous_label))
-        else:
-            f.writelines('{}\n'.format(normal_label))
-            if range_id < len(range_list) - 1:
-                range_id += 1
-    f.close()

tsadmetrics/_tsadeval/eTaPR_pkg/DataManage/Range.py

@@ -1,50 +0,0 @@
-# To store a single anomaly
-class Range:
-    def __init__(self, first, last, name):
-        self._first_timestamp = first
-        self._last_timestamp = last
-        self._name = name
-
-    def set_time(self, first, last):
-        self._first_timestamp = first
-        self._last_timestamp = last
-
-    def get_time(self):
-        return self._first_timestamp, self._last_timestamp
-
-    def set_name(self, str):
-        self._name = str
-
-    def get_name(self):
-        return self._name
-
-    def get_len(self):
-        return self._last_timestamp - self._first_timestamp + 1
-
-    def __eq__(self, other):
-        return self._first_timestamp == other.get_time()[0] and self._last_timestamp == other.get_time()[1]
-
-    def distance(self, other_range) -> int:
-        if min(self._last_timestamp, other_range.get_time()[1]) - max(self._first_timestamp, other_range.get_time()[0]) > 0:
-            return 0
-        else:
-            return min(abs(self._first_timestamp - other_range.get_time()[1]),
-                       abs(self._last_timestamp - other_range.get_time()[0]))
-
-    def compare(self, other_range) -> int:
-        if min(self._last_timestamp, other_range.get_time()[1]) - max(self._first_timestamp, other_range.get_time()[0]) > 0:
-            return 0
-        elif self._last_timestamp - other_range.get_time()[0] < 0:
-            return -1
-        else:
-            return 1
-
-def stream_2_ranges(self, prediction_stream: list) -> list:
-    result = []
-    for i in range(len(prediction_stream)-1):
-        start_time = 0
-        if prediction_stream[i] == 0 and prediction_stream[i+1] == 1:
-            start_time = i+1
-        elif prediction_stream[i] == 1 and prediction_stream[i+1] == 0:
-            result.append(Range(start_time, i, ''))
-    return result

tsadmetrics/_tsadeval/eTaPR_pkg/DataManage/Time_Plot.py

@@ -1,184 +0,0 @@
-import numpy as np
-import cv2 as cv
-from copy import deepcopy
-import pathlib
-
-def convert_index(org_index, max_index, graph_width, margin_left):
-    return round(float(org_index/max_index)*graph_width+margin_left)
-
-def draw_csv(ranges, img, h_floor, h_ceiling, color, max_index, graph_width, margin_left):
-    for a_range in ranges:
-        start_time = convert_index(a_range.get_time()[0], max_index, graph_width, margin_left)
-        end_time = convert_index(a_range.get_time()[1], max_index, graph_width, margin_left)
-        cv.rectangle(img, (start_time, h_floor), (end_time, h_ceiling), color, thickness=-1)
-
-def draw_csv_range(ranges, img, h_floor, h_ceiling, color, start, end):
-    for a_range in ranges:
-        if a_range.get_time()[0] <= end or a_range.get_time()[1] >= start:
-            cv.rectangle(img, (a_range.get_time()[0]-start+10, h_floor), (a_range.get_time()[1]-start+10, h_ceiling), color, thickness=-1)
-
-def shift_ranges(ranges, first_idx):
-    for a_range in ranges:
-        a_range.set_time(a_range.get_time()[0] - first_idx, a_range.get_time()[1] - first_idx)
-
-def draw_graphs(anomalies, predictions, how_show: str):
-    method_list = [ 'Anomalies', 'Predictions' ]
-    anomalies = deepcopy(anomalies)
-    predictions = deepcopy(predictions)
-    first_idx = min(anomalies[0].get_time()[0]-100, predictions[0].get_time()[0])
-    last_idx = max(anomalies[-1].get_time()[1], predictions[-1].get_time()[1])
-    marginal_idx = int(float(last_idx-first_idx)/100)
-    first_idx -= marginal_idx
-    shift_ranges(anomalies, first_idx)
-    shift_ranges(predictions, first_idx)
-    ranges_list = [ anomalies, predictions ]
-    max_index = max(anomalies[-1].get_time()[1], predictions[-1].get_time()[1]) + marginal_idx
-
-    color_list = [(70, 70, 70),  #black
-                  (60, 76, 203),  #red
-                  (193, 134, 46),  #blue
-                  (133, 160, 22),  #green
-                  (206, 143, 187),  #purple
-                  (94, 73, 52),  # darkblue
-                  (63, 208, 244)  #yellow
-                  ]
-
-    margin_left   = 10
-    margin_right  = 150
-    margin_top    = 20
-    margin_bottom = 40
-
-    graph_gap = 20
-    graph_height = 40
-    graph_width = 2000
-
-    n_results = 2
-
-    width = margin_left + graph_width + margin_right
-    height = margin_top + margin_bottom + n_results * (graph_gap + graph_height)
-    bpp = 3
-
-    img = np.ones((height, width, bpp), np.uint8)*255
-
-    img_h = img.shape[0]
-    img_w = img.shape[1]
-    img_bpp = img.shape[2]
-
-    thickness = 1
-    fontsize = 1
-    cv.line(img, (int(margin_left/2), img_h-margin_bottom), (img_w-int(margin_left/2), img_h-margin_bottom), color_list[0], thickness) #x-axis
-    pts = np.array([[img_w-int(margin_left/2), img_h-margin_bottom], [img_w-int(margin_left/2)-7, img_h-margin_bottom+5], [img_w-int(margin_left/2)-7, img_h-margin_bottom-5]], np.int32) #arrow_head
-    pts = pts.reshape((-1, 1, 2))
-    cv.fillPoly(img, [pts], color_list[0])
-    cv.putText(img, 'Relative Index', (img_w-180, img_h-15), cv.FONT_HERSHEY_COMPLEX_SMALL, fontsize, color_list[0], 1, cv.LINE_AA) #x-axis label
-
-    for i in range(margin_left, width-margin_right, int(graph_width/10)):
-        cv.line(img, (i, img_h-margin_bottom+2), (i, img_h-margin_bottom-2), color_list[0], thickness)
-        org_index = str(round((i-10) / graph_width * max_index / 1000))
-        cv.putText(img, org_index+'K', (i-len(org_index)*5, img_h-margin_bottom + 25), cv.FONT_HERSHEY_COMPLEX_SMALL, fontsize, color_list[0], 1, cv.LINE_AA)
-
-    thickness = -1
-    for idx in range(n_results):
-        cv.putText(img, method_list[idx],
-                   (width - margin_right + 2, img_h - margin_bottom - graph_gap * (idx+1) - graph_height * idx - 12),
-                   cv.FONT_HERSHEY_COMPLEX_SMALL, fontsize, color_list[0], 1, cv.LINE_AA)
-        draw_csv(ranges_list[idx], img, h_floor=img_h - margin_bottom - graph_gap * (idx+1) - graph_height * idx,
-                 h_ceiling=img_h - margin_bottom - graph_gap * (idx+1) - graph_height * (idx+1),
-                 color=color_list[(idx+1)%len(color_list)],
-                 max_index=max_index, graph_width=graph_width, margin_left=margin_left)
-
-    if how_show == 'screen' or how_show == 'all':
-        cv.imshow("drawing", img)
-    if how_show == 'file' or how_show == 'all':
-        cv.imwrite("../../brief_result.png", img)
-    if how_show != 'screen' and how_show != 'all' and how_show != 'file':
-        print('Parameter Error')
-    cv.waitKey(0);
-
-
-def draw_multi_graphs(anomalies, predictions_list, predictions_name_list, how_show: str):
-    method_list = [ 'Anomalies' ] + predictions_name_list
-
-    anomalies = deepcopy(anomalies)
-    predictions_list = deepcopy(predictions_list)
-
-    first_idx = anomalies[0].get_time()[0]-100
-    last_idx = anomalies[-1].get_time()[1]
-    for single_prediction in predictions_list:
-        first_idx = min(first_idx, single_prediction[0].get_time()[0])
-        last_idx = max(last_idx, single_prediction[-1].get_time()[1])
-
-    marginal_idx = int(float(last_idx-first_idx)/100)
-    first_idx -= marginal_idx
-    shift_ranges(anomalies, first_idx)
-    for single_prediction in predictions_list:
-        shift_ranges(single_prediction, first_idx)
-
-    ranges_list = [ anomalies ] + predictions_list
-
-    max_index = anomalies[-1].get_time()[1]
-    for single_prediction in predictions_list:
-        max_index = max(max_index, single_prediction[-1].get_time()[1])
-    max_index = max_index + marginal_idx
-
-    color_list = [(0, 0, 0),  #black
-                  (60, 76, 203),  #red
-                  (193, 134, 46),  #blue
-                  (133, 160, 22),  #green
-                  (206, 143, 187),  #purple
-                  (94, 73, 52),  # darkblue
-                  (63, 208, 244)  #yellow
-                  ]
-
-    margin_left   = 10
-    margin_right  = 180
-    margin_top    = 20
-    margin_bottom = 40
-
-    graph_gap = 20
-    graph_height = 40
-    graph_width = 2000
-
-    n_results = len(ranges_list)
-
-    width = margin_left + graph_width + margin_right
-    height = margin_top + margin_bottom + n_results * (graph_gap + graph_height)
-    bpp = 3
-
-    img = np.ones((height, width, bpp), np.uint8)*255
-
-    img_h = img.shape[0]
-    img_w = img.shape[1]
-    img_bpp = img.shape[2]
-
-    thickness = 1
-    fontsize = 1.4
-    cv.line(img, (int(margin_left/2), img_h-margin_bottom), (img_w-int(margin_left/2), img_h-margin_bottom), color_list[0], thickness) #x-axis
-    pts = np.array([[img_w-int(margin_left/2), img_h-margin_bottom], [img_w-int(margin_left/2)-7, img_h-margin_bottom+5], [img_w-int(margin_left/2)-7, img_h-margin_bottom-5]], np.int32) #arrow_head
-    pts = pts.reshape((-1, 1, 2))
-    cv.fillPoly(img, [pts], color_list[0])
-    cv.putText(img, 'Relative Index', (img_w-180, img_h-15), cv.FONT_HERSHEY_COMPLEX_SMALL, 1, color_list[0], 1, cv.LINE_AA) #x-axis label
-
-    for i in range(margin_left, width-margin_right, int(graph_width/10)):
-        cv.line(img, (i, img_h-margin_bottom+2), (i, img_h-margin_bottom-2), color_list[0], thickness)
-        org_index = str(round((i-10) / graph_width * max_index / 1000))
-        cv.putText(img, org_index+'K', (i-len(org_index)*5, img_h-margin_bottom + 25), cv.FONT_HERSHEY_COMPLEX_SMALL, 1, color_list[0], 1, cv.LINE_AA)
-
-    thickness = -1
-    for idx in range(n_results):
-        cv.putText(img, method_list[idx],
-                   (width - margin_right + 2, img_h - margin_bottom - graph_gap * (idx+1) - graph_height * idx - 12),
-                   cv.FONT_HERSHEY_COMPLEX_SMALL, fontsize, color_list[0], 1, cv.LINE_AA)
-        draw_csv(ranges_list[idx], img, h_floor=img_h - margin_bottom - graph_gap * (idx+1) - graph_height * idx,
-                 h_ceiling=img_h - margin_bottom - graph_gap * (idx+1) - graph_height * (idx+1),
-                 color=color_list[(idx+1)%len(color_list)],
-                 max_index=max_index, graph_width=graph_width, margin_left=margin_left)
-
-    if how_show == 'screen' or how_show == 'all':
-        cv.imshow("drawing", img)
-    if how_show == 'file' or how_show == 'all':
-        print("The file is saved at " + str(pathlib.Path(__file__).parent.absolute()))
-        cv.imwrite("./brief_result.png", img)
-    if how_show != 'screen' and how_show != 'all' and how_show != 'file':
-        print('Parameter Error')
-    cv.waitKey(0);