tooluniverse 1.0.6__py3-none-any.whl → 1.0.8__py3-none-any.whl

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  1. tooluniverse/__init__.py +56 -10
  2. tooluniverse/admetai_tool.py +8 -4
  3. tooluniverse/agentic_tool.py +40 -4
  4. tooluniverse/arxiv_tool.py +2 -6
  5. tooluniverse/base_tool.py +210 -25
  6. tooluniverse/biogrid_tool.py +118 -0
  7. tooluniverse/biorxiv_tool.py +35 -16
  8. tooluniverse/build_optimizer.py +87 -0
  9. tooluniverse/cache/__init__.py +3 -0
  10. tooluniverse/cache/memory_cache.py +99 -0
  11. tooluniverse/cache/result_cache_manager.py +235 -0
  12. tooluniverse/cache/sqlite_backend.py +257 -0
  13. tooluniverse/cellosaurus_tool.py +1332 -0
  14. tooluniverse/clinvar_tool.py +90 -0
  15. tooluniverse/compose_scripts/enhanced_multi_agent_literature_search.py +310 -0
  16. tooluniverse/compose_scripts/multi_agent_literature_search.py +794 -0
  17. tooluniverse/compose_scripts/tool_graph_generation.py +68 -35
  18. tooluniverse/compose_scripts/tool_metadata_generator.py +205 -105
  19. tooluniverse/compose_tool.py +93 -8
  20. tooluniverse/core_tool.py +46 -44
  21. tooluniverse/crossref_tool.py +89 -4
  22. tooluniverse/custom_tool.py +28 -0
  23. tooluniverse/data/agentic_tools.json +1271 -1179
  24. tooluniverse/data/alphafold_tools.json +356 -105
  25. tooluniverse/data/arxiv_tools.json +85 -81
  26. tooluniverse/data/biorxiv_tools.json +69 -64
  27. tooluniverse/data/cellosaurus_tools.json +260 -0
  28. tooluniverse/data/chembl_tools.json +27 -12
  29. tooluniverse/data/clinicaltrials_gov_tools.json +377 -302
  30. tooluniverse/data/compose_tools.json +123 -16
  31. tooluniverse/data/core_tools.json +104 -99
  32. tooluniverse/data/crossref_tools.json +131 -63
  33. tooluniverse/data/dailymed_tools.json +17 -3
  34. tooluniverse/data/dataset_tools.json +1031 -588
  35. tooluniverse/data/dblp_tools.json +135 -64
  36. tooluniverse/data/disease_target_score_tools.json +20 -10
  37. tooluniverse/data/doaj_tools.json +131 -87
  38. tooluniverse/data/drug_discovery_agents.json +292 -0
  39. tooluniverse/data/embedding_tools.json +362 -299
  40. tooluniverse/data/enrichr_tools.json +34 -27
  41. tooluniverse/data/europe_pmc_tools.json +107 -16
  42. tooluniverse/data/fatcat_tools.json +71 -66
  43. tooluniverse/data/fda_drug_adverse_event_tools.json +1061 -445
  44. tooluniverse/data/fda_drug_labeling_tools.json +6858 -6901
  45. tooluniverse/data/finder_tools.json +32 -37
  46. tooluniverse/data/gene_ontology_tools.json +19 -7
  47. tooluniverse/data/genomics_tools.json +174 -0
  48. tooluniverse/data/geo_tools.json +86 -0
  49. tooluniverse/data/gwas_tools.json +1720 -959
  50. tooluniverse/data/hal_tools.json +69 -64
  51. tooluniverse/data/hpa_tools.json +53 -14
  52. tooluniverse/data/humanbase_tools.json +51 -43
  53. tooluniverse/data/idmap_tools.json +76 -70
  54. tooluniverse/data/literature_search_tools.json +306 -0
  55. tooluniverse/data/markitdown_tools.json +51 -0
  56. tooluniverse/data/mcp_client_tools_example.json +122 -107
  57. tooluniverse/data/medlineplus_tools.json +50 -10
  58. tooluniverse/data/medrxiv_tools.json +69 -64
  59. tooluniverse/data/molecule_2d_tools.json +134 -0
  60. tooluniverse/data/molecule_3d_tools.json +164 -0
  61. tooluniverse/data/monarch_tools.json +112 -110
  62. tooluniverse/data/odphp_tools.json +389 -119
  63. tooluniverse/data/openaire_tools.json +89 -79
  64. tooluniverse/data/openalex_tools.json +96 -31
  65. tooluniverse/data/opentarget_tools.json +1457 -1372
  66. tooluniverse/data/osf_preprints_tools.json +77 -73
  67. tooluniverse/data/packages/bioinformatics_core_tools.json +40 -10
  68. tooluniverse/data/packages/cheminformatics_tools.json +20 -5
  69. tooluniverse/data/packages/genomics_tools.json +36 -9
  70. tooluniverse/data/packages/machine_learning_tools.json +36 -9
  71. tooluniverse/data/packages/scientific_computing_tools.json +20 -5
  72. tooluniverse/data/packages/single_cell_tools.json +20 -5
  73. tooluniverse/data/packages/structural_biology_tools.json +16 -4
  74. tooluniverse/data/packages/visualization_tools.json +20 -5
  75. tooluniverse/data/pmc_tools.json +108 -103
  76. tooluniverse/data/ppi_tools.json +139 -0
  77. tooluniverse/data/protein_structure_3d_tools.json +138 -0
  78. tooluniverse/data/pubchem_tools.json +37 -12
  79. tooluniverse/data/pubmed_tools.json +124 -58
  80. tooluniverse/data/pubtator_tools.json +68 -60
  81. tooluniverse/data/rcsb_pdb_tools.json +1532 -1221
  82. tooluniverse/data/semantic_scholar_tools.json +54 -22
  83. tooluniverse/data/special_tools.json +8 -6
  84. tooluniverse/data/tool_composition_tools.json +112 -82
  85. tooluniverse/data/unified_guideline_tools.json +909 -0
  86. tooluniverse/data/url_fetch_tools.json +102 -82
  87. tooluniverse/data/uspto_tools.json +49 -30
  88. tooluniverse/data/wikidata_sparql_tools.json +42 -39
  89. tooluniverse/data/xml_tools.json +3274 -3113
  90. tooluniverse/data/zenodo_tools.json +83 -76
  91. tooluniverse/dblp_tool.py +76 -6
  92. tooluniverse/dbsnp_tool.py +71 -0
  93. tooluniverse/default_config.py +19 -0
  94. tooluniverse/doaj_tool.py +76 -17
  95. tooluniverse/doctor.py +48 -0
  96. tooluniverse/ensembl_tool.py +61 -0
  97. tooluniverse/europe_pmc_tool.py +132 -17
  98. tooluniverse/exceptions.py +170 -0
  99. tooluniverse/execute_function.py +930 -387
  100. tooluniverse/fatcat_tool.py +0 -1
  101. tooluniverse/generate_tools.py +481 -0
  102. tooluniverse/genomics_gene_search_tool.py +56 -0
  103. tooluniverse/geo_tool.py +116 -0
  104. tooluniverse/gnomad_tool.py +63 -0
  105. tooluniverse/hal_tool.py +1 -1
  106. tooluniverse/llm_clients.py +101 -124
  107. tooluniverse/markitdown_tool.py +159 -0
  108. tooluniverse/mcp_client_tool.py +10 -5
  109. tooluniverse/mcp_tool_registry.py +4 -1
  110. tooluniverse/medrxiv_tool.py +32 -13
  111. tooluniverse/memory_manager.py +166 -0
  112. tooluniverse/molecule_2d_tool.py +274 -0
  113. tooluniverse/molecule_3d_tool.py +441 -0
  114. tooluniverse/odphp_tool.py +49 -14
  115. tooluniverse/openaire_tool.py +5 -20
  116. tooluniverse/openalex_tool.py +34 -0
  117. tooluniverse/osf_preprints_tool.py +1 -1
  118. tooluniverse/pmc_tool.py +54 -56
  119. tooluniverse/protein_structure_3d_tool.py +295 -0
  120. tooluniverse/pubmed_tool.py +69 -6
  121. tooluniverse/remote/boltz/boltz_mcp_server.py +3 -1
  122. tooluniverse/remote/uspto_downloader/uspto_downloader_mcp_server.py +3 -1
  123. tooluniverse/semantic_scholar_tool.py +40 -10
  124. tooluniverse/smcp.py +149 -213
  125. tooluniverse/smcp_server.py +97 -55
  126. tooluniverse/string_tool.py +112 -0
  127. tooluniverse/tool_registry.py +35 -3
  128. tooluniverse/tools/ADMETAI_predict_BBB_penetrance.py +46 -0
  129. tooluniverse/tools/ADMETAI_predict_CYP_interactions.py +46 -0
  130. tooluniverse/tools/ADMETAI_predict_bioavailability.py +46 -0
  131. tooluniverse/tools/ADMETAI_predict_clearance_distribution.py +49 -0
  132. tooluniverse/tools/ADMETAI_predict_nuclear_receptor_activity.py +49 -0
  133. tooluniverse/tools/ADMETAI_predict_physicochemical_properties.py +49 -0
  134. tooluniverse/tools/ADMETAI_predict_solubility_lipophilicity_hydration.py +49 -0
  135. tooluniverse/tools/ADMETAI_predict_stress_response.py +46 -0
  136. tooluniverse/tools/ADMETAI_predict_toxicity.py +46 -0
  137. tooluniverse/tools/ADMETAnalyzerAgent.py +59 -0
  138. tooluniverse/tools/AdvancedCodeQualityAnalyzer.py +63 -0
  139. tooluniverse/tools/AdverseEventICDMapper.py +46 -0
  140. tooluniverse/tools/AdverseEventPredictionQuestionGenerator.py +52 -0
  141. tooluniverse/tools/AdverseEventPredictionQuestionGeneratorWithContext.py +59 -0
  142. tooluniverse/tools/ArXiv_search_papers.py +63 -0
  143. tooluniverse/tools/ArgumentDescriptionOptimizer.py +55 -0
  144. tooluniverse/tools/BioRxiv_search_preprints.py +52 -0
  145. tooluniverse/tools/BiomarkerDiscoveryWorkflow.py +55 -0
  146. tooluniverse/tools/CMA_Guidelines_Search.py +52 -0
  147. tooluniverse/tools/CORE_search_papers.py +67 -0
  148. tooluniverse/tools/CallAgent.py +46 -0
  149. tooluniverse/tools/ChEMBL_search_similar_molecules.py +59 -0
  150. tooluniverse/tools/ClinVar_search_variants.py +52 -0
  151. tooluniverse/tools/ClinicalTrialDesignAgent.py +63 -0
  152. tooluniverse/tools/CodeOptimizer.py +55 -0
  153. tooluniverse/tools/CodeQualityAnalyzer.py +71 -0
  154. tooluniverse/tools/CompoundDiscoveryAgent.py +59 -0
  155. tooluniverse/tools/ComprehensiveDrugDiscoveryPipeline.py +49 -0
  156. tooluniverse/tools/Crossref_search_works.py +55 -0
  157. tooluniverse/tools/DBLP_search_publications.py +52 -0
  158. tooluniverse/tools/DOAJ_search_articles.py +55 -0
  159. tooluniverse/tools/DailyMed_get_spl_by_setid.py +52 -0
  160. tooluniverse/tools/DailyMed_search_spls.py +79 -0
  161. tooluniverse/tools/DataAnalysisValidityReviewer.py +49 -0
  162. tooluniverse/tools/DescriptionAnalyzer.py +55 -0
  163. tooluniverse/tools/DescriptionQualityEvaluator.py +59 -0
  164. tooluniverse/tools/DiseaseAnalyzerAgent.py +52 -0
  165. tooluniverse/tools/DomainExpertValidator.py +63 -0
  166. tooluniverse/tools/DrugInteractionAnalyzerAgent.py +52 -0
  167. tooluniverse/tools/DrugOptimizationAgent.py +63 -0
  168. tooluniverse/tools/DrugSafetyAnalyzer.py +59 -0
  169. tooluniverse/tools/Ensembl_lookup_gene_by_symbol.py +52 -0
  170. tooluniverse/tools/EthicalComplianceReviewer.py +49 -0
  171. tooluniverse/tools/EuropePMC_Guidelines_Search.py +52 -0
  172. tooluniverse/tools/EuropePMC_search_articles.py +52 -0
  173. tooluniverse/tools/ExperimentalDesignScorer.py +55 -0
  174. tooluniverse/tools/FAERS_count_additive_administration_routes.py +52 -0
  175. tooluniverse/tools/FAERS_count_additive_adverse_reactions.py +71 -0
  176. tooluniverse/tools/FAERS_count_additive_event_reports_by_country.py +63 -0
  177. tooluniverse/tools/FAERS_count_additive_reaction_outcomes.py +63 -0
  178. tooluniverse/tools/FAERS_count_additive_reports_by_reporter_country.py +63 -0
  179. tooluniverse/tools/FAERS_count_additive_seriousness_classification.py +63 -0
  180. tooluniverse/tools/FAERS_count_country_by_drug_event.py +63 -0
  181. tooluniverse/tools/FAERS_count_death_related_by_drug.py +49 -0
  182. tooluniverse/tools/FAERS_count_drug_routes_by_event.py +52 -0
  183. tooluniverse/tools/FAERS_count_drugs_by_drug_event.py +63 -0
  184. tooluniverse/tools/FAERS_count_outcomes_by_drug_event.py +63 -0
  185. tooluniverse/tools/FAERS_count_patient_age_distribution.py +49 -0
  186. tooluniverse/tools/FAERS_count_reactions_by_drug_event.py +71 -0
  187. tooluniverse/tools/FAERS_count_reportercountry_by_drug_event.py +63 -0
  188. tooluniverse/tools/FAERS_count_seriousness_by_drug_event.py +63 -0
  189. tooluniverse/tools/FDA_get_abuse_dependence_info_by_drug_name.py +55 -0
  190. tooluniverse/tools/FDA_get_abuse_info_by_drug_name.py +55 -0
  191. tooluniverse/tools/FDA_get_accessories_info_by_drug_name.py +55 -0
  192. tooluniverse/tools/FDA_get_active_ingredient_info_by_drug_name.py +55 -0
  193. tooluniverse/tools/FDA_get_adverse_reactions_by_drug_name.py +55 -0
  194. tooluniverse/tools/FDA_get_alarms_by_drug_name.py +55 -0
  195. tooluniverse/tools/FDA_get_animal_pharmacology_info_by_drug_name.py +55 -0
  196. tooluniverse/tools/FDA_get_assembly_installation_info_by_drug_name.py +55 -0
  197. tooluniverse/tools/FDA_get_boxed_warning_info_by_drug_name.py +55 -0
  198. tooluniverse/tools/FDA_get_brand_name_generic_name.py +52 -0
  199. tooluniverse/tools/FDA_get_calibration_instructions_by_drug_name.py +55 -0
  200. tooluniverse/tools/FDA_get_carcinogenic_mutagenic_fertility_by_drug_name.py +55 -0
  201. tooluniverse/tools/FDA_get_child_safety_info_by_drug_name.py +55 -0
  202. tooluniverse/tools/FDA_get_clinical_pharmacology_by_drug_name.py +55 -0
  203. tooluniverse/tools/FDA_get_clinical_studies_info_by_drug_name.py +55 -0
  204. tooluniverse/tools/FDA_get_contact_for_questions_info_by_drug_name.py +55 -0
  205. tooluniverse/tools/FDA_get_contraindications_by_drug_name.py +55 -0
  206. tooluniverse/tools/FDA_get_controlled_substance_DEA_schedule_info_by_drug_name.py +55 -0
  207. tooluniverse/tools/FDA_get_dear_health_care_provider_letter_info_by_drug_name.py +55 -0
  208. tooluniverse/tools/FDA_get_dependence_info_by_drug_name.py +55 -0
  209. tooluniverse/tools/FDA_get_disposal_info_by_drug_name.py +55 -0
  210. tooluniverse/tools/FDA_get_do_not_use_info_by_drug_name.py +55 -0
  211. tooluniverse/tools/FDA_get_document_id_by_drug_name.py +55 -0
  212. tooluniverse/tools/FDA_get_dosage_and_storage_information_by_drug_name.py +55 -0
  213. tooluniverse/tools/FDA_get_dosage_forms_and_strengths_by_drug_name.py +55 -0
  214. tooluniverse/tools/FDA_get_drug_generic_name.py +46 -0
  215. tooluniverse/tools/FDA_get_drug_interactions_by_drug_name.py +55 -0
  216. tooluniverse/tools/FDA_get_drug_name_by_SPL_ID.py +55 -0
  217. tooluniverse/tools/FDA_get_drug_name_by_adverse_reaction.py +59 -0
  218. tooluniverse/tools/FDA_get_drug_name_by_calibration_instructions.py +59 -0
  219. tooluniverse/tools/FDA_get_drug_name_by_dependence_info.py +59 -0
  220. tooluniverse/tools/FDA_get_drug_name_by_document_id.py +55 -0
  221. tooluniverse/tools/FDA_get_drug_name_by_dosage_info.py +55 -0
  222. tooluniverse/tools/FDA_get_drug_name_by_environmental_warning.py +59 -0
  223. tooluniverse/tools/FDA_get_drug_name_by_inactive_ingredient.py +59 -0
  224. tooluniverse/tools/FDA_get_drug_name_by_info_on_conditions_for_doctor_consultation.py +55 -0
  225. tooluniverse/tools/FDA_get_drug_name_by_labor_and_delivery_info.py +59 -0
  226. tooluniverse/tools/FDA_get_drug_name_by_microbiology.py +59 -0
  227. tooluniverse/tools/FDA_get_drug_name_by_other_safety_info.py +55 -0
  228. tooluniverse/tools/FDA_get_drug_name_by_pharmacodynamics.py +59 -0
  229. tooluniverse/tools/FDA_get_drug_name_by_pharmacogenomics.py +59 -0
  230. tooluniverse/tools/FDA_get_drug_name_by_precautions.py +55 -0
  231. tooluniverse/tools/FDA_get_drug_name_by_pregnancy_or_breastfeeding_info.py +59 -0
  232. tooluniverse/tools/FDA_get_drug_name_by_principal_display_panel.py +59 -0
  233. tooluniverse/tools/FDA_get_drug_name_by_reference.py +55 -0
  234. tooluniverse/tools/FDA_get_drug_name_by_set_id.py +55 -0
  235. tooluniverse/tools/FDA_get_drug_name_by_stop_use_info.py +55 -0
  236. tooluniverse/tools/FDA_get_drug_name_by_storage_and_handling_info.py +55 -0
  237. tooluniverse/tools/FDA_get_drug_name_by_warnings.py +55 -0
  238. tooluniverse/tools/FDA_get_drug_name_from_patient_package_insert.py +59 -0
  239. tooluniverse/tools/FDA_get_drug_names_by_abuse_dependence_info.py +55 -0
  240. tooluniverse/tools/FDA_get_drug_names_by_abuse_info.py +63 -0
  241. tooluniverse/tools/FDA_get_drug_names_by_accessories.py +63 -0
  242. tooluniverse/tools/FDA_get_drug_names_by_active_ingredient.py +63 -0
  243. tooluniverse/tools/FDA_get_drug_names_by_alarm.py +63 -0
  244. tooluniverse/tools/FDA_get_drug_names_by_animal_pharmacology_info.py +63 -0
  245. tooluniverse/tools/FDA_get_drug_names_by_application_number_NDC_number.py +59 -0
  246. tooluniverse/tools/FDA_get_drug_names_by_assembly_installation_info.py +63 -0
  247. tooluniverse/tools/FDA_get_drug_names_by_boxed_warning.py +63 -0
  248. tooluniverse/tools/FDA_get_drug_names_by_child_safety_info.py +63 -0
  249. tooluniverse/tools/FDA_get_drug_names_by_clinical_pharmacology.py +63 -0
  250. tooluniverse/tools/FDA_get_drug_names_by_clinical_studies.py +63 -0
  251. tooluniverse/tools/FDA_get_drug_names_by_consulting_doctor_pharmacist_info.py +63 -0
  252. tooluniverse/tools/FDA_get_drug_names_by_contraindications.py +63 -0
  253. tooluniverse/tools/FDA_get_drug_names_by_controlled_substance_DEA_schedule.py +63 -0
  254. tooluniverse/tools/FDA_get_drug_names_by_dear_health_care_provider_letter_info.py +63 -0
  255. tooluniverse/tools/FDA_get_drug_names_by_disposal_info.py +63 -0
  256. tooluniverse/tools/FDA_get_drug_names_by_dosage_forms_and_strengths_info.py +63 -0
  257. tooluniverse/tools/FDA_get_drug_names_by_drug_interactions.py +63 -0
  258. tooluniverse/tools/FDA_get_drug_names_by_effective_time.py +63 -0
  259. tooluniverse/tools/FDA_get_drug_names_by_food_safety_warnings.py +63 -0
  260. tooluniverse/tools/FDA_get_drug_names_by_general_precautions.py +63 -0
  261. tooluniverse/tools/FDA_get_drug_names_by_geriatric_use.py +63 -0
  262. tooluniverse/tools/FDA_get_drug_names_by_health_claim.py +63 -0
  263. tooluniverse/tools/FDA_get_drug_names_by_indication.py +55 -0
  264. tooluniverse/tools/FDA_get_drug_names_by_info_for_nursing_mothers.py +63 -0
  265. tooluniverse/tools/FDA_get_drug_names_by_information_for_owners_or_caregivers.py +63 -0
  266. tooluniverse/tools/FDA_get_drug_names_by_ingredient.py +63 -0
  267. tooluniverse/tools/FDA_get_drug_names_by_instructions_for_use.py +63 -0
  268. tooluniverse/tools/FDA_get_drug_names_by_lab_test_interference.py +63 -0
  269. tooluniverse/tools/FDA_get_drug_names_by_lab_tests.py +63 -0
  270. tooluniverse/tools/FDA_get_drug_names_by_mechanism_of_action.py +63 -0
  271. tooluniverse/tools/FDA_get_drug_names_by_medication_guide.py +63 -0
  272. tooluniverse/tools/FDA_get_drug_names_by_nonclinical_toxicology_info.py +63 -0
  273. tooluniverse/tools/FDA_get_drug_names_by_nonteratogenic_effects.py +63 -0
  274. tooluniverse/tools/FDA_get_drug_names_by_overdosage_info.py +63 -0
  275. tooluniverse/tools/FDA_get_drug_names_by_pediatric_use.py +63 -0
  276. tooluniverse/tools/FDA_get_drug_names_by_pharmacokinetics.py +63 -0
  277. tooluniverse/tools/FDA_get_drug_names_by_population_use.py +63 -0
  278. tooluniverse/tools/FDA_get_drug_names_by_pregnancy_effects_info.py +63 -0
  279. tooluniverse/tools/FDA_get_drug_names_by_residue_warning.py +63 -0
  280. tooluniverse/tools/FDA_get_drug_names_by_risk.py +63 -0
  281. tooluniverse/tools/FDA_get_drug_names_by_route.py +63 -0
  282. tooluniverse/tools/FDA_get_drug_names_by_safe_handling_warning.py +63 -0
  283. tooluniverse/tools/FDA_get_drug_names_by_safety_summary.py +63 -0
  284. tooluniverse/tools/FDA_get_drug_names_by_spl_indexing_data_elements.py +63 -0
  285. tooluniverse/tools/FDA_get_drug_names_by_teratogenic_effects.py +63 -0
  286. tooluniverse/tools/FDA_get_drug_names_by_user_safety_warning.py +63 -0
  287. tooluniverse/tools/FDA_get_drug_names_by_warnings_and_cautions.py +63 -0
  288. tooluniverse/tools/FDA_get_drugs_by_carcinogenic_mutagenic_fertility.py +63 -0
  289. tooluniverse/tools/FDA_get_effective_time_by_drug_name.py +55 -0
  290. tooluniverse/tools/FDA_get_environmental_warning_by_drug_name.py +55 -0
  291. tooluniverse/tools/FDA_get_general_precautions_by_drug_name.py +55 -0
  292. tooluniverse/tools/FDA_get_geriatric_use_info_by_drug_name.py +55 -0
  293. tooluniverse/tools/FDA_get_health_claims_by_drug_name.py +55 -0
  294. tooluniverse/tools/FDA_get_inactive_ingredient_info_by_drug_name.py +55 -0
  295. tooluniverse/tools/FDA_get_indications_by_drug_name.py +55 -0
  296. tooluniverse/tools/FDA_get_info_for_nursing_mothers_by_drug_name.py +55 -0
  297. tooluniverse/tools/FDA_get_info_for_patients_by_drug_name.py +55 -0
  298. tooluniverse/tools/FDA_get_info_on_conditions_for_doctor_consultation_by_drug_name.py +55 -0
  299. tooluniverse/tools/FDA_get_info_on_consulting_doctor_pharmacist_by_drug_name.py +55 -0
  300. tooluniverse/tools/FDA_get_information_for_owners_or_caregivers_by_drug_name.py +55 -0
  301. tooluniverse/tools/FDA_get_ingredients_by_drug_name.py +55 -0
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  788. tooluniverse/tools/mesh_get_subjects_by_subject_name.py +63 -0
  789. tooluniverse/tools/mesh_get_subjects_by_subject_scope_or_definition.py +63 -0
  790. tooluniverse/tools/odphp_itemlist.py +49 -0
  791. tooluniverse/tools/odphp_myhealthfinder.py +67 -0
  792. tooluniverse/tools/odphp_outlink_fetch.py +59 -0
  793. tooluniverse/tools/odphp_topicsearch.py +67 -0
  794. tooluniverse/tools/openalex_literature_search.py +67 -0
  795. tooluniverse/tools/reactome_disease_target_score.py +52 -0
  796. tooluniverse/tools/search_clinical_trials.py +67 -0
  797. tooluniverse/tools/visualize_molecule_2d.py +83 -0
  798. tooluniverse/tools/visualize_molecule_3d.py +91 -0
  799. tooluniverse/tools/visualize_protein_structure_3d.py +79 -0
  800. tooluniverse/ucsc_tool.py +60 -0
  801. tooluniverse/unified_guideline_tools.py +2328 -0
  802. tooluniverse/unpaywall_tool.py +0 -1
  803. tooluniverse/utils.py +122 -6
  804. tooluniverse/visualization_tool.py +897 -0
  805. tooluniverse/wikidata_sparql_tool.py +1 -2
  806. tooluniverse/zenodo_tool.py +3 -4
  807. {tooluniverse-1.0.6.dist-info → tooluniverse-1.0.8.dist-info}/METADATA +19 -4
  808. tooluniverse-1.0.8.dist-info/RECORD +891 -0
  809. {tooluniverse-1.0.6.dist-info → tooluniverse-1.0.8.dist-info}/entry_points.txt +3 -0
  810. tooluniverse/test/list_azure_openai_models.py +0 -210
  811. tooluniverse/test/mcp_server_test.py +0 -0
  812. tooluniverse/test/test_admetai_tool.py +0 -370
  813. tooluniverse/test/test_agentic_tool.py +0 -129
  814. tooluniverse/test/test_agentic_tool_azure_models.py +0 -91
  815. tooluniverse/test/test_alphafold_tool.py +0 -108
  816. tooluniverse/test/test_api_key_validation_min.py +0 -64
  817. tooluniverse/test/test_chem_tool.py +0 -37
  818. tooluniverse/test/test_claude_sdk.py +0 -93
  819. tooluniverse/test/test_compose_lieraturereview.py +0 -63
  820. tooluniverse/test/test_compose_tool.py +0 -448
  821. tooluniverse/test/test_dailymed.py +0 -69
  822. tooluniverse/test/test_dataset_tool.py +0 -200
  823. tooluniverse/test/test_disease_target_score.py +0 -56
  824. tooluniverse/test/test_drugbank_filter_examples.py +0 -179
  825. tooluniverse/test/test_efo.py +0 -31
  826. tooluniverse/test/test_enrichr_tool.py +0 -21
  827. tooluniverse/test/test_europe_pmc_tool.py +0 -20
  828. tooluniverse/test/test_fda_adv.py +0 -95
  829. tooluniverse/test/test_fda_drug_labeling.py +0 -91
  830. tooluniverse/test/test_gene_ontology_tools.py +0 -66
  831. tooluniverse/test/test_global_fallback.py +0 -288
  832. tooluniverse/test/test_gwas_tool.py +0 -139
  833. tooluniverse/test/test_hooks_direct.py +0 -219
  834. tooluniverse/test/test_hpa.py +0 -625
  835. tooluniverse/test/test_humanbase_tool.py +0 -20
  836. tooluniverse/test/test_idmap_tools.py +0 -61
  837. tooluniverse/test/test_list_built_in_tools.py +0 -33
  838. tooluniverse/test/test_mcp_server.py +0 -211
  839. tooluniverse/test/test_mcp_tool.py +0 -247
  840. tooluniverse/test/test_medlineplus.py +0 -220
  841. tooluniverse/test/test_odphp_tool.py +0 -166
  842. tooluniverse/test/test_openalex_tool.py +0 -32
  843. tooluniverse/test/test_openrouter_client.py +0 -288
  844. tooluniverse/test/test_opentargets.py +0 -28
  845. tooluniverse/test/test_pubchem_tool.py +0 -116
  846. tooluniverse/test/test_pubtator_tool.py +0 -37
  847. tooluniverse/test/test_rcsb_pdb_tool.py +0 -86
  848. tooluniverse/test/test_reactome.py +0 -54
  849. tooluniverse/test/test_semantic_scholar_tool.py +0 -24
  850. tooluniverse/test/test_software_tools.py +0 -147
  851. tooluniverse/test/test_stdio_hooks.py +0 -285
  852. tooluniverse/test/test_tool_description_optimizer.py +0 -49
  853. tooluniverse/test/test_tool_finder.py +0 -26
  854. tooluniverse/test/test_tool_finder_llm.py +0 -252
  855. tooluniverse/test/test_tools_find.py +0 -195
  856. tooluniverse/test/test_uniprot_tools.py +0 -74
  857. tooluniverse/test/test_uspto_tool.py +0 -72
  858. tooluniverse/test/test_xml_tool.py +0 -113
  859. tooluniverse-1.0.6.dist-info/RECORD +0 -230
  860. {tooluniverse-1.0.6.dist-info → tooluniverse-1.0.8.dist-info}/WHEEL +0 -0
  861. {tooluniverse-1.0.6.dist-info → tooluniverse-1.0.8.dist-info}/licenses/LICENSE +0 -0
  862. {tooluniverse-1.0.6.dist-info → tooluniverse-1.0.8.dist-info}/top_level.txt +0 -0
@@ -0,0 +1,909 @@
1
+ [
2
+ {
3
+ "type": "NICEWebScrapingTool",
4
+ "name": "NICE_Clinical_Guidelines_Search",
5
+ "description": "Search NICE (National Institute for Health and Care Excellence) clinical guidelines and evidence-based recommendations. Provides access to official NICE guidelines covering diagnosis, treatment, and care pathways for various medical conditions.",
6
+ "parameter": {
7
+ "type": "object",
8
+ "properties": {
9
+ "query": {
10
+ "type": "string",
11
+ "description": "Medical condition, treatment, or clinical topic to search for in NICE guidelines (e.g., 'diabetes', 'hypertension', 'cancer screening')"
12
+ },
13
+ "limit": {
14
+ "type": "integer",
15
+ "description": "Maximum number of clinical guidelines to return (default: 10)",
16
+ "default": 10
17
+ }
18
+ },
19
+ "required": [
20
+ "query",
21
+ "limit"
22
+ ]
23
+ },
24
+ "return_schema": {
25
+ "type": "array",
26
+ "description": "List of NICE clinical guidelines and evidence-based recommendations",
27
+ "items": {
28
+ "type": "object",
29
+ "properties": {
30
+ "title": {
31
+ "type": "string",
32
+ "description": "Official title of the NICE clinical guideline"
33
+ },
34
+ "url": {
35
+ "type": "string",
36
+ "description": "Direct URL to the full NICE guideline on the official website"
37
+ },
38
+ "summary": {
39
+ "type": "string",
40
+ "description": "Clinical summary and scope of the guideline"
41
+ },
42
+ "content": {
43
+ "type": "string",
44
+ "description": "Cleaned clinical content extracted from the guideline page"
45
+ },
46
+ "date": {
47
+ "type": "string",
48
+ "description": "Publication or last updated date"
49
+ },
50
+ "type": {
51
+ "type": "string",
52
+ "description": "Type of NICE guidance (e.g., NICE Guideline, Quality Standard)"
53
+ },
54
+ "source": {
55
+ "type": "string",
56
+ "description": "Source organization (NICE - National Institute for Health and Care Excellence)"
57
+ },
58
+ "is_guideline": {
59
+ "type": "boolean",
60
+ "description": "Indicates if this is an official clinical guideline"
61
+ },
62
+ "category": {
63
+ "type": "string",
64
+ "description": "Clinical category or medical specialty"
65
+ }
66
+ }
67
+ }
68
+ }
69
+ },
70
+ {
71
+ "type": "PubMedGuidelinesTool",
72
+ "name": "PubMed_Guidelines_Search",
73
+ "description": "Search PubMed for peer-reviewed clinical practice guidelines using NCBI E-utilities. Filters results specifically for guideline and practice guideline publication types. Provides access to high-quality, evidence-based clinical guidelines from medical journals worldwide.",
74
+ "parameter": {
75
+ "type": "object",
76
+ "properties": {
77
+ "query": {
78
+ "type": "string",
79
+ "description": "Medical condition, treatment, or clinical topic to search for (e.g., 'diabetes', 'hypertension management', 'cancer treatment')"
80
+ },
81
+ "limit": {
82
+ "type": "integer",
83
+ "description": "Maximum number of guidelines to return (default: 10)",
84
+ "default": 10
85
+ },
86
+ "api_key": {
87
+ "type": "string",
88
+ "description": "Optional NCBI API key for higher rate limits. Get your free key at https://www.ncbi.nlm.nih.gov/account/"
89
+ }
90
+ },
91
+ "required": [
92
+ "query",
93
+ "limit",
94
+ "api_key"
95
+ ]
96
+ },
97
+ "return_schema": {
98
+ "type": "object",
99
+ "properties": {
100
+ "guidelines": {
101
+ "type": "array",
102
+ "description": "List of clinical practice guidelines from PubMed",
103
+ "items": {
104
+ "type": "object",
105
+ "properties": {
106
+ "pmid": {
107
+ "type": "string",
108
+ "description": "PubMed ID"
109
+ },
110
+ "title": {
111
+ "type": "string",
112
+ "description": "Title of the guideline"
113
+ },
114
+ "authors": {
115
+ "type": "string",
116
+ "description": "Authors of the guideline"
117
+ },
118
+ "journal": {
119
+ "type": "string",
120
+ "description": "Journal where the guideline was published"
121
+ },
122
+ "publication_date": {
123
+ "type": "string",
124
+ "description": "Publication date"
125
+ },
126
+ "publication_types": {
127
+ "type": "array",
128
+ "description": "Publication type classifications",
129
+ "items": {
130
+ "type": "string"
131
+ }
132
+ },
133
+ "abstract": {
134
+ "type": "string",
135
+ "description": "Abstract text returned from PubMed"
136
+ },
137
+ "content": {
138
+ "type": "string",
139
+ "description": "Cleaned clinical content (mirrors abstract)"
140
+ },
141
+ "is_guideline": {
142
+ "type": "boolean",
143
+ "description": "Confirms this is a clinical guideline"
144
+ },
145
+ "url": {
146
+ "type": "string",
147
+ "description": "URL to the PubMed article"
148
+ },
149
+ "doi": {
150
+ "type": "string",
151
+ "description": "Digital Object Identifier (if available)"
152
+ },
153
+ "source": {
154
+ "type": "string",
155
+ "description": "Source database (PubMed)"
156
+ }
157
+ }
158
+ }
159
+ },
160
+ "total_count": {
161
+ "type": "integer",
162
+ "description": "Total number of guidelines found"
163
+ },
164
+ "query": {
165
+ "type": "string",
166
+ "description": "Original search query"
167
+ },
168
+ "source": {
169
+ "type": "string",
170
+ "description": "Source database (PubMed)"
171
+ }
172
+ }
173
+ }
174
+ },
175
+ {
176
+ "type": "EuropePMCGuidelinesTool",
177
+ "name": "EuropePMC_Guidelines_Search",
178
+ "description": "Search Europe PMC for clinical guidelines and evidence-based recommendations. Europe PMC provides free access to a comprehensive archive of life sciences literature, including clinical practice guidelines from international sources.",
179
+ "parameter": {
180
+ "type": "object",
181
+ "properties": {
182
+ "query": {
183
+ "type": "string",
184
+ "description": "Medical condition, treatment, or clinical topic to search for (e.g., 'diabetes', 'cardiovascular disease', 'mental health')"
185
+ },
186
+ "limit": {
187
+ "type": "integer",
188
+ "description": "Maximum number of guidelines to return (default: 10)",
189
+ "default": 10
190
+ }
191
+ },
192
+ "required": [
193
+ "query",
194
+ "limit"
195
+ ]
196
+ },
197
+ "return_schema": {
198
+ "type": "object",
199
+ "properties": {
200
+ "guidelines": {
201
+ "type": "array",
202
+ "description": "List of clinical guidelines from Europe PMC",
203
+ "items": {
204
+ "type": "object",
205
+ "properties": {
206
+ "title": {
207
+ "type": "string",
208
+ "description": "Title of the guideline"
209
+ },
210
+ "pmid": {
211
+ "type": "string",
212
+ "description": "PubMed ID (if available)"
213
+ },
214
+ "pmcid": {
215
+ "type": "string",
216
+ "description": "PubMed Central ID (if available)"
217
+ },
218
+ "doi": {
219
+ "type": "string",
220
+ "description": "Digital Object Identifier (if available)"
221
+ },
222
+ "authors": {
223
+ "type": "string",
224
+ "description": "Authors of the guideline"
225
+ },
226
+ "journal": {
227
+ "type": "string",
228
+ "description": "Journal where the guideline was published"
229
+ },
230
+ "publication_date": {
231
+ "type": "string",
232
+ "description": "Publication date"
233
+ },
234
+ "publication_type": {
235
+ "type": "string",
236
+ "description": "Type of publication"
237
+ },
238
+ "abstract": {
239
+ "type": "string",
240
+ "description": "Abstract or summary of the guideline"
241
+ },
242
+ "content": {
243
+ "type": "string",
244
+ "description": "Extended clinical content extracted from Europe PMC when available"
245
+ },
246
+ "is_guideline": {
247
+ "type": "boolean",
248
+ "description": "Indicates if this is a clinical guideline"
249
+ },
250
+ "url": {
251
+ "type": "string",
252
+ "description": "URL to the article on Europe PMC"
253
+ },
254
+ "source": {
255
+ "type": "string",
256
+ "description": "Source database (Europe PMC)"
257
+ }
258
+ }
259
+ }
260
+ },
261
+ "total_count": {
262
+ "type": "integer",
263
+ "description": "Total number of guidelines found"
264
+ },
265
+ "query": {
266
+ "type": "string",
267
+ "description": "Original search query"
268
+ },
269
+ "source": {
270
+ "type": "string",
271
+ "description": "Source database (Europe PMC)"
272
+ }
273
+ }
274
+ }
275
+ },
276
+ {
277
+ "type": "TRIPDatabaseTool",
278
+ "name": "TRIP_Database_Guidelines_Search",
279
+ "description": "Search TRIP Database (Turning Research into Practice) for evidence-based clinical guidelines. TRIP is a specialized clinical search engine that focuses on high-quality evidence-based content, particularly clinical guidelines from reputable sources worldwide.",
280
+ "parameter": {
281
+ "type": "object",
282
+ "properties": {
283
+ "query": {
284
+ "type": "string",
285
+ "description": "Medical condition, treatment, or clinical question (e.g., 'diabetes management', 'stroke prevention', 'antibiotic therapy')"
286
+ },
287
+ "limit": {
288
+ "type": "integer",
289
+ "description": "Maximum number of guidelines to return (default: 10)",
290
+ "default": 10
291
+ },
292
+ "search_type": {
293
+ "type": "string",
294
+ "description": "Type of content to search for (default: 'guideline'). Options include 'guideline', 'systematic-review', 'evidence-based-synopses'",
295
+ "default": "guideline"
296
+ }
297
+ },
298
+ "required": [
299
+ "query",
300
+ "limit",
301
+ "search_type"
302
+ ]
303
+ },
304
+ "return_schema": {
305
+ "type": "object",
306
+ "properties": {
307
+ "guidelines": {
308
+ "type": "array",
309
+ "description": "List of clinical guidelines from TRIP Database",
310
+ "items": {
311
+ "type": "object",
312
+ "properties": {
313
+ "title": {
314
+ "type": "string",
315
+ "description": "Title of the guideline"
316
+ },
317
+ "url": {
318
+ "type": "string",
319
+ "description": "URL to the guideline"
320
+ },
321
+ "publication": {
322
+ "type": "string",
323
+ "description": "Publication source or organization"
324
+ },
325
+ "category": {
326
+ "type": "string",
327
+ "description": "Category or type of guideline"
328
+ },
329
+ "description": {
330
+ "type": "string",
331
+ "description": "Short description provided by TRIP"
332
+ },
333
+ "content": {
334
+ "type": "string",
335
+ "description": "Detailed clinical content extracted from the guideline page when available"
336
+ },
337
+ "key_recommendations": {
338
+ "type": "array",
339
+ "description": "Extracted key recommendations (title and summary) when available",
340
+ "items": {
341
+ "type": "object",
342
+ "properties": {
343
+ "title": {
344
+ "type": "string",
345
+ "description": "Heading for the recommendation"
346
+ },
347
+ "summary": {
348
+ "type": "string",
349
+ "description": "Summary text of the recommendation"
350
+ }
351
+ }
352
+ }
353
+ },
354
+ "evidence_strength": {
355
+ "type": "array",
356
+ "description": "Strength-of-evidence or grading statements extracted from the guideline",
357
+ "items": {
358
+ "type": "object",
359
+ "properties": {
360
+ "section": {
361
+ "type": "string",
362
+ "description": "Reference section for the strength statement"
363
+ },
364
+ "strength": {
365
+ "type": "string",
366
+ "description": "Narrative grading (e.g., 'Strong recommendation')"
367
+ }
368
+ }
369
+ }
370
+ },
371
+ "is_guideline": {
372
+ "type": "boolean",
373
+ "description": "Confirms this is a clinical guideline"
374
+ },
375
+ "source": {
376
+ "type": "string",
377
+ "description": "Source database (TRIP Database)"
378
+ }
379
+ }
380
+ }
381
+ },
382
+ "total_count": {
383
+ "type": "integer",
384
+ "description": "Total number of guidelines found"
385
+ },
386
+ "query": {
387
+ "type": "string",
388
+ "description": "Original search query"
389
+ },
390
+ "search_type": {
391
+ "type": "string",
392
+ "description": "Type of content searched"
393
+ },
394
+ "source": {
395
+ "type": "string",
396
+ "description": "Source database (TRIP Database)"
397
+ }
398
+ }
399
+ }
400
+ },
401
+ {
402
+ "type": "WHOGuidelinesTool",
403
+ "name": "WHO_Guidelines_Search",
404
+ "description": "Search WHO (World Health Organization) official clinical guidelines and health recommendations. Provides access to authoritative global health guidelines published by WHO.",
405
+ "parameter": {
406
+ "type": "object",
407
+ "properties": {
408
+ "query": {
409
+ "type": "string",
410
+ "description": "Medical condition, disease, or health topic to search for in WHO guidelines (e.g., 'malaria', 'HIV', 'diabetes', 'tuberculosis')"
411
+ },
412
+ "limit": {
413
+ "type": "integer",
414
+ "description": "Maximum number of guidelines to return (default: 10)",
415
+ "default": 10
416
+ }
417
+ },
418
+ "required": [
419
+ "query",
420
+ "limit"
421
+ ]
422
+ },
423
+ "return_schema": {
424
+ "type": "object",
425
+ "description": "WHO guidelines search results",
426
+ "properties": {
427
+ "guidelines": {
428
+ "type": "array",
429
+ "description": "List of WHO clinical guidelines",
430
+ "items": {
431
+ "type": "object",
432
+ "properties": {
433
+ "title": {
434
+ "type": "string",
435
+ "description": "Official title of the WHO guideline"
436
+ },
437
+ "url": {
438
+ "type": "string",
439
+ "description": "Direct URL to the WHO guideline publication"
440
+ },
441
+ "source": {
442
+ "type": "string",
443
+ "description": "Source (WHO)"
444
+ },
445
+ "organization": {
446
+ "type": "string",
447
+ "description": "Publishing organization (World Health Organization)"
448
+ },
449
+ "is_guideline": {
450
+ "type": "boolean",
451
+ "description": "Indicates this is an official guideline"
452
+ },
453
+ "official": {
454
+ "type": "boolean",
455
+ "description": "Indicates this is an official WHO publication"
456
+ }
457
+ }
458
+ }
459
+ },
460
+ "total_count": {
461
+ "type": "integer",
462
+ "description": "Total number of guidelines returned"
463
+ },
464
+ "query": {
465
+ "type": "string",
466
+ "description": "The search query used"
467
+ },
468
+ "source": {
469
+ "type": "string",
470
+ "description": "Source (WHO)"
471
+ },
472
+ "organization": {
473
+ "type": "string",
474
+ "description": "World Health Organization"
475
+ },
476
+ "note": {
477
+ "type": "string",
478
+ "description": "Additional notes about the search results (if any)"
479
+ }
480
+ }
481
+ }
482
+ },
483
+ {
484
+ "type": "OpenAlexGuidelinesTool",
485
+ "name": "OpenAlex_Guidelines_Search",
486
+ "description": "Search for clinical practice guidelines using OpenAlex scholarly database. Provides access to a comprehensive collection of guidelines from various sources worldwide, with citation metrics and institutional affiliations.",
487
+ "parameter": {
488
+ "type": "object",
489
+ "properties": {
490
+ "query": {
491
+ "type": "string",
492
+ "description": "Medical condition or clinical topic to search for guidelines (e.g., 'diabetes management', 'hypertension treatment', 'cancer screening')"
493
+ },
494
+ "limit": {
495
+ "type": "integer",
496
+ "description": "Maximum number of guidelines to return (default: 10)",
497
+ "default": 10
498
+ },
499
+ "year_from": {
500
+ "type": "integer",
501
+ "description": "Filter for guidelines published from this year onwards (optional)"
502
+ },
503
+ "year_to": {
504
+ "type": "integer",
505
+ "description": "Filter for guidelines published up to this year (optional)"
506
+ }
507
+ },
508
+ "required": [
509
+ "query",
510
+ "limit",
511
+ "year_from",
512
+ "year_to"
513
+ ]
514
+ },
515
+ "return_schema": {
516
+ "type": "object",
517
+ "description": "OpenAlex guidelines search results",
518
+ "properties": {
519
+ "guidelines": {
520
+ "type": "array",
521
+ "description": "List of clinical practice guidelines from OpenAlex",
522
+ "items": {
523
+ "type": "object",
524
+ "properties": {
525
+ "title": {
526
+ "type": "string",
527
+ "description": "Title of the guideline or clinical paper"
528
+ },
529
+ "authors": {
530
+ "type": "array",
531
+ "description": "List of author names",
532
+ "items": {
533
+ "type": "string"
534
+ }
535
+ },
536
+ "institutions": {
537
+ "type": "array",
538
+ "description": "Affiliated institutions (up to 3)",
539
+ "items": {
540
+ "type": "string"
541
+ }
542
+ },
543
+ "year": {
544
+ "type": "integer",
545
+ "description": "Publication year"
546
+ },
547
+ "doi": {
548
+ "type": "string",
549
+ "description": "Digital Object Identifier"
550
+ },
551
+ "url": {
552
+ "type": "string",
553
+ "description": "URL to access the guideline (DOI or OpenAlex URL)"
554
+ },
555
+ "openalex_id": {
556
+ "type": "string",
557
+ "description": "OpenAlex unique identifier"
558
+ },
559
+ "cited_by_count": {
560
+ "type": "integer",
561
+ "description": "Number of citations"
562
+ },
563
+ "is_guideline": {
564
+ "type": "boolean",
565
+ "description": "Indicates if the work is likely a clinical guideline"
566
+ },
567
+ "source": {
568
+ "type": "string",
569
+ "description": "Source database (OpenAlex)"
570
+ },
571
+ "abstract": {
572
+ "type": "string",
573
+ "description": "Abstract or summary (first 500 characters if available)"
574
+ }
575
+ }
576
+ }
577
+ },
578
+ "total_count": {
579
+ "type": "integer",
580
+ "description": "Total number of guidelines in database matching query"
581
+ },
582
+ "returned_count": {
583
+ "type": "integer",
584
+ "description": "Number of guidelines returned in this response"
585
+ },
586
+ "query": {
587
+ "type": "string",
588
+ "description": "The search query used"
589
+ },
590
+ "source": {
591
+ "type": "string",
592
+ "description": "Source database (OpenAlex)"
593
+ }
594
+ }
595
+ }
596
+ },
597
+ {
598
+ "type": "NICEGuidelineFullTextTool",
599
+ "name": "NICE_Guideline_Full_Text",
600
+ "description": "Fetch complete full text content from a NICE clinical guideline page. Takes a NICE guideline URL and extracts all sections, recommendations, and complete guideline text. Use this after finding a guideline with NICE_Clinical_Guidelines_Search to get the full content.",
601
+ "parameter": {
602
+ "type": "object",
603
+ "properties": {
604
+ "url": {
605
+ "type": "string",
606
+ "description": "Full URL of the NICE guideline page (e.g., 'https://www.nice.org.uk/guidance/ng28'). Must be a valid NICE guideline URL."
607
+ }
608
+ },
609
+ "required": [
610
+ "url"
611
+ ]
612
+ },
613
+ "return_schema": {
614
+ "type": "object",
615
+ "description": "Complete NICE guideline content with full text, sections, and recommendations",
616
+ "properties": {
617
+ "url": {
618
+ "type": "string",
619
+ "description": "URL of the NICE guideline"
620
+ },
621
+ "title": {
622
+ "type": "string",
623
+ "description": "Full title of the guideline"
624
+ },
625
+ "metadata": {
626
+ "type": "object",
627
+ "description": "Guideline metadata including publication date and guideline code",
628
+ "properties": {
629
+ "published_date": {
630
+ "type": "string",
631
+ "description": "Publication or last updated date"
632
+ },
633
+ "guideline_code": {
634
+ "type": "string",
635
+ "description": "NICE guideline code (e.g., NG28, TA123)"
636
+ }
637
+ }
638
+ },
639
+ "full_text": {
640
+ "type": "string",
641
+ "description": "Complete guideline text with all sections and content"
642
+ },
643
+ "full_text_length": {
644
+ "type": "integer",
645
+ "description": "Length of full text in characters"
646
+ },
647
+ "sections_count": {
648
+ "type": "integer",
649
+ "description": "Number of content sections extracted"
650
+ },
651
+ "recommendations": {
652
+ "type": "array",
653
+ "description": "List of specific clinical recommendations (up to 20)",
654
+ "items": {
655
+ "type": "string"
656
+ }
657
+ },
658
+ "recommendations_count": {
659
+ "type": "integer",
660
+ "description": "Total number of recommendations found"
661
+ },
662
+ "source": {
663
+ "type": "string",
664
+ "description": "Source (NICE)"
665
+ },
666
+ "content_type": {
667
+ "type": "string",
668
+ "description": "Type of content (full_guideline)"
669
+ },
670
+ "success": {
671
+ "type": "boolean",
672
+ "description": "Whether full text extraction was successful"
673
+ }
674
+ }
675
+ }
676
+ },
677
+ {
678
+ "type": "WHOGuidelineFullTextTool",
679
+ "name": "WHO_Guideline_Full_Text",
680
+ "description": "Fetch full text content from a WHO (World Health Organization) guideline publication page. Extracts available web content and finds PDF download links. Use this after finding a guideline with WHO_Guidelines_Search to get the full content or PDF link.",
681
+ "parameter": {
682
+ "type": "object",
683
+ "properties": {
684
+ "url": {
685
+ "type": "string",
686
+ "description": "Full URL of the WHO publication page (e.g., 'https://www.who.int/publications/i/item/9789240113879'). Must be a valid WHO publication URL."
687
+ }
688
+ },
689
+ "required": [
690
+ "url"
691
+ ]
692
+ },
693
+ "return_schema": {
694
+ "type": "object",
695
+ "description": "WHO guideline content including overview, main content, and PDF download link",
696
+ "properties": {
697
+ "url": {
698
+ "type": "string",
699
+ "description": "URL of the WHO publication page"
700
+ },
701
+ "title": {
702
+ "type": "string",
703
+ "description": "Full title of the guideline"
704
+ },
705
+ "metadata": {
706
+ "type": "object",
707
+ "description": "Publication metadata including date and ISBN",
708
+ "properties": {
709
+ "published_date": {
710
+ "type": "string",
711
+ "description": "Publication date"
712
+ },
713
+ "isbn": {
714
+ "type": "string",
715
+ "description": "ISBN number if available"
716
+ }
717
+ }
718
+ },
719
+ "overview": {
720
+ "type": "string",
721
+ "description": "Overview and description of the guideline"
722
+ },
723
+ "main_content": {
724
+ "type": "string",
725
+ "description": "Main content text extracted from the web page"
726
+ },
727
+ "content_length": {
728
+ "type": "integer",
729
+ "description": "Length of content in characters"
730
+ },
731
+ "key_facts": {
732
+ "type": "array",
733
+ "description": "Key facts or highlights",
734
+ "items": {
735
+ "type": "string"
736
+ }
737
+ },
738
+ "pdf_download_url": {
739
+ "type": "string",
740
+ "description": "Direct URL to download the full guideline PDF (if available)"
741
+ },
742
+ "has_pdf": {
743
+ "type": "boolean",
744
+ "description": "Whether a PDF download is available"
745
+ },
746
+ "source": {
747
+ "type": "string",
748
+ "description": "Source (WHO)"
749
+ },
750
+ "content_type": {
751
+ "type": "string",
752
+ "description": "Type of content (guideline_page)"
753
+ },
754
+ "success": {
755
+ "type": "boolean",
756
+ "description": "Whether content extraction was successful"
757
+ },
758
+ "note": {
759
+ "type": "string",
760
+ "description": "Additional notes about content availability"
761
+ }
762
+ }
763
+ }
764
+ },
765
+ {
766
+ "type": "GINGuidelinesTool",
767
+ "name": "GIN_Guidelines_Search",
768
+ "description": "Search Guidelines International Network (GIN) guidelines database. GIN maintains the world's largest database of clinical guidelines with over 6400 guidelines from various organizations worldwide.",
769
+ "parameter": {
770
+ "type": "object",
771
+ "properties": {
772
+ "query": {
773
+ "type": "string",
774
+ "description": "Medical condition, treatment, or clinical topic to search for in GIN guidelines (e.g., 'diabetes management', 'hypertension treatment', 'cancer screening')"
775
+ },
776
+ "limit": {
777
+ "type": "integer",
778
+ "description": "Maximum number of guidelines to return (default: 10)",
779
+ "default": 10
780
+ }
781
+ },
782
+ "required": [
783
+ "query",
784
+ "limit"
785
+ ]
786
+ },
787
+ "return_schema": {
788
+ "type": "array",
789
+ "description": "List of GIN clinical guidelines from various international organizations",
790
+ "items": {
791
+ "type": "object",
792
+ "properties": {
793
+ "title": {
794
+ "type": "string",
795
+ "description": "Title of the guideline"
796
+ },
797
+ "url": {
798
+ "type": "string",
799
+ "description": "URL to access the guideline"
800
+ },
801
+ "description": {
802
+ "type": "string",
803
+ "description": "Description or summary of the guideline"
804
+ },
805
+ "date": {
806
+ "type": "string",
807
+ "description": "Publication or update date"
808
+ },
809
+ "source": {
810
+ "type": "string",
811
+ "description": "Source organization (GIN)"
812
+ },
813
+ "organization": {
814
+ "type": "string",
815
+ "description": "Organization that developed the guideline"
816
+ },
817
+ "is_guideline": {
818
+ "type": "boolean",
819
+ "description": "Indicates this is a clinical guideline"
820
+ },
821
+ "official": {
822
+ "type": "boolean",
823
+ "description": "Indicates this is an official publication"
824
+ },
825
+ "content": {
826
+ "type": "string",
827
+ "description": "Full content of the guideline"
828
+ },
829
+ "note": {
830
+ "type": "string",
831
+ "description": "Additional notes about content availability"
832
+ }
833
+ }
834
+ }
835
+ }
836
+ },
837
+ {
838
+ "type": "CMAGuidelinesTool",
839
+ "name": "CMA_Guidelines_Search",
840
+ "description": "Search Canadian Medical Association (CMA) Infobase guidelines. Contains over 1200 evidence-based clinical practice guidelines developed or endorsed by Canadian healthcare organizations.",
841
+ "parameter": {
842
+ "type": "object",
843
+ "properties": {
844
+ "query": {
845
+ "type": "string",
846
+ "description": "Medical condition, treatment, or clinical topic to search for in CMA guidelines (e.g., 'diabetes management', 'hypertension treatment', 'cancer screening')"
847
+ },
848
+ "limit": {
849
+ "type": "integer",
850
+ "description": "Maximum number of guidelines to return (default: 10)",
851
+ "default": 10
852
+ }
853
+ },
854
+ "required": [
855
+ "query",
856
+ "limit"
857
+ ]
858
+ },
859
+ "return_schema": {
860
+ "type": "array",
861
+ "description": "List of CMA Infobase clinical practice guidelines",
862
+ "items": {
863
+ "type": "object",
864
+ "properties": {
865
+ "title": {
866
+ "type": "string",
867
+ "description": "Title of the guideline"
868
+ },
869
+ "url": {
870
+ "type": "string",
871
+ "description": "URL to access the guideline"
872
+ },
873
+ "description": {
874
+ "type": "string",
875
+ "description": "Description or summary of the guideline"
876
+ },
877
+ "date": {
878
+ "type": "string",
879
+ "description": "Publication or update date"
880
+ },
881
+ "source": {
882
+ "type": "string",
883
+ "description": "Source organization (CMA)"
884
+ },
885
+ "organization": {
886
+ "type": "string",
887
+ "description": "Canadian healthcare organization that developed the guideline"
888
+ },
889
+ "is_guideline": {
890
+ "type": "boolean",
891
+ "description": "Indicates this is a clinical guideline"
892
+ },
893
+ "official": {
894
+ "type": "boolean",
895
+ "description": "Indicates this is an official publication"
896
+ },
897
+ "content": {
898
+ "type": "string",
899
+ "description": "Full content of the guideline"
900
+ },
901
+ "note": {
902
+ "type": "string",
903
+ "description": "Additional notes about content availability"
904
+ }
905
+ }
906
+ }
907
+ }
908
+ }
909
+ ]