PyPI - tomwer - Versions diffs - 1.2.1__py3-none-any.whl → 1.3.12__py3-none-any.whl - Mend

tomwer 1.2.1py3-none-any.whl → 1.3.12py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (334) hide show

orangecontrib/tomwer/tutorials/icat_publication.ows +58 -0
orangecontrib/tomwer/widgets/__init__.py +11 -11
orangecontrib/tomwer/widgets/control/DataDiscoveryOW.py +2 -2
orangecontrib/tomwer/widgets/control/DataListOW.py +9 -7
orangecontrib/tomwer/widgets/control/DataListenerOW.py +6 -6
orangecontrib/tomwer/widgets/control/DataSelectorOW.py +21 -10
orangecontrib/tomwer/widgets/control/DataValidatorOW.py +6 -6
orangecontrib/tomwer/widgets/control/EDF2NXTomomillOW.py +24 -7
orangecontrib/tomwer/widgets/control/EmailOW.py +4 -4
orangecontrib/tomwer/widgets/control/NXTomomillMixIn.py +3 -3
orangecontrib/tomwer/widgets/control/NXTomomillOW.py +64 -23
orangecontrib/tomwer/widgets/control/NXtomoConcatenate.py +20 -8
orangecontrib/tomwer/widgets/control/NotifierOW.py +1 -0
orangecontrib/tomwer/widgets/control/SingleTomoObjOW.py +6 -6
orangecontrib/tomwer/widgets/control/VolumeSelector.py +7 -4
orangecontrib/tomwer/widgets/control/VolumeSymLinkOW.py +182 -182
orangecontrib/tomwer/widgets/debugtools/DatasetGeneratorOW.py +5 -5
orangecontrib/tomwer/widgets/edit/DarkFlatPatchOW.py +4 -4
orangecontrib/tomwer/widgets/edit/ImageKeyEditorOW.py +3 -3
orangecontrib/tomwer/widgets/edit/ImageKeyUpgraderOW.py +8 -1
orangecontrib/tomwer/widgets/edit/NXtomoEditorOW.py +3 -3
orangecontrib/tomwer/widgets/edit/test/test_nxtomo_editor.py +3 -3
orangecontrib/tomwer/widgets/icat/PublishProcessedDataOW.py +115 -0
orangecontrib/tomwer/widgets/icat/RawDataScreenshotCreatorOW.py +98 -0
orangecontrib/tomwer/widgets/icat/SaveToGalleryAndPublishOW.py +129 -0
orangecontrib/tomwer/widgets/icat/__init__.py +13 -0
orangecontrib/tomwer/widgets/icat/icons/add_gallery.png +0 -0
orangecontrib/tomwer/widgets/icat/icons/add_gallery.svg +82 -0
orangecontrib/tomwer/widgets/icat/icons/publish_processed_data.png +0 -0
orangecontrib/tomwer/widgets/icat/icons/publish_processed_data.svg +95 -0
orangecontrib/tomwer/widgets/icat/icons/raw_screenshots.png +0 -0
orangecontrib/tomwer/widgets/icat/icons/raw_screenshots.svg +143 -0
orangecontrib/tomwer/widgets/icons/tomwer_data_portal.png +0 -0
orangecontrib/tomwer/widgets/icons/tomwer_data_portal.svg +76 -0
orangecontrib/tomwer/widgets/reconstruction/AxisOW.py +22 -20
orangecontrib/tomwer/widgets/reconstruction/CastNabuVolumeOW.py +19 -3
orangecontrib/tomwer/widgets/reconstruction/NabuHelicalPrepareWeightsDoubleOW.py +184 -169
orangecontrib/tomwer/widgets/reconstruction/NabuOW.py +23 -0
orangecontrib/tomwer/widgets/reconstruction/NabuVolumeOW.py +39 -5
orangecontrib/tomwer/widgets/reconstruction/SAAxisOW.py +18 -22
orangecontrib/tomwer/widgets/reconstruction/SADeltaBetaOW.py +18 -26
orangecontrib/tomwer/widgets/reconstruction/SinoNormOW.py +15 -19
orangecontrib/tomwer/widgets/visualization/DataViewerOW.py +9 -9
orangecontrib/tomwer/widgets/visualization/DiffViewerOW.py +1 -1
orangecontrib/tomwer/widgets/visualization/LivesliceOW.py +1 -1
orangecontrib/tomwer/widgets/visualization/NXtomoMetadataViewerOW.py +3 -3
orangecontrib/tomwer/widgets/visualization/SinogramViewerOW.py +0 -1
orangecontrib/tomwer/widgets/visualization/VolumeViewerOW.py +3 -29
tomwer/__main__.py +7 -64
tomwer/app/axis.py +3 -3
tomwer/app/canvas.py +8 -0
tomwer/app/canvas_launcher/config.py +16 -14
tomwer/app/canvas_launcher/environ.py +1 -0
tomwer/app/canvas_launcher/mainwindow.py +4 -1
tomwer/app/darkref.py +1 -1
tomwer/app/darkrefpatch.py +1 -1
tomwer/app/diffframe.py +3 -3
tomwer/app/imagekeyeditor.py +5 -5
tomwer/app/imagekeyupgrader.py +5 -5
tomwer/app/intensitynormalization.py +14 -13
tomwer/app/{saaxis.py → multicor.py} +3 -3
tomwer/app/{sadeltabeta.py → multipag.py} +3 -3
tomwer/app/nabuapp.py +0 -11
tomwer/app/radiostack.py +6 -4
tomwer/app/samplemoved.py +3 -2
tomwer/app/scanviewer.py +4 -2
tomwer/app/sinogramviewer.py +3 -2
tomwer/app/slicestack.py +3 -2
tomwer/app/zstitching.py +88 -6
tomwer/core/cluster/cluster.py +26 -0
tomwer/core/log/logger.py +7 -5
tomwer/core/process/conditions/filters.py +1 -1
tomwer/core/process/control/datalistener/datalistener.py +19 -14
tomwer/core/process/control/datawatcher/edfdwprocess.py +0 -9
tomwer/core/process/control/nxtomoconcatenate.py +13 -13
tomwer/core/process/control/nxtomomill.py +92 -34
tomwer/core/process/control/scantransfer.py +20 -43
tomwer/core/process/control/scanvalidator.py +3 -2
tomwer/core/process/control/test/test_concatenate_nxtomos.py +9 -9
tomwer/core/process/control/test/test_email.py +4 -4
tomwer/core/process/control/test/test_h52nx_process.py +59 -7
tomwer/core/process/control/test/test_volume_link.py +64 -64
tomwer/core/process/control/timer.py +1 -1
tomwer/core/process/control/volumesymlink.py +200 -200
tomwer/core/process/edit/darkflatpatch.py +14 -15
tomwer/core/process/edit/imagekeyeditor.py +41 -39
tomwer/core/process/icat/__init__.py +0 -0
tomwer/core/process/icat/createscreenshots.py +100 -0
tomwer/core/process/icat/gallery.py +377 -0
tomwer/core/process/icat/icatbase.py +36 -0
tomwer/core/process/icat/publish.py +228 -0
tomwer/core/process/icat/screenshots.py +27 -0
tomwer/core/process/output.py +52 -0
tomwer/core/process/reconstruction/axis/axis.py +280 -69
tomwer/core/process/reconstruction/axis/mode.py +163 -48
tomwer/core/process/reconstruction/axis/params.py +29 -21
tomwer/core/process/reconstruction/darkref/darkrefs.py +41 -127
tomwer/core/process/reconstruction/darkref/darkrefscopy.py +4 -3
tomwer/core/process/reconstruction/darkref/params.py +1 -1
tomwer/core/process/reconstruction/nabu/castvolume.py +4 -4
tomwer/core/process/reconstruction/nabu/helical.py +9 -5
tomwer/core/process/reconstruction/nabu/nabucommon.py +71 -78
tomwer/core/process/reconstruction/nabu/nabuscores.py +425 -53
tomwer/core/process/reconstruction/nabu/nabuslices.py +114 -93
tomwer/core/process/reconstruction/nabu/nabuvolume.py +54 -27
tomwer/core/process/reconstruction/nabu/plane.py +9 -0
tomwer/core/process/reconstruction/nabu/settings.py +2 -2
tomwer/core/process/reconstruction/nabu/utils.py +164 -26
tomwer/core/process/reconstruction/output.py +108 -0
tomwer/core/process/reconstruction/saaxis/saaxis.py +238 -264
tomwer/core/process/reconstruction/sadeltabeta/sadeltabeta.py +151 -87
tomwer/core/process/reconstruction/scores/params.py +7 -4
tomwer/core/process/reconstruction/scores/scores.py +13 -0
tomwer/core/process/reconstruction/test/test_axis_params.py +2 -2
tomwer/core/process/reconstruction/test/test_darkref.py +3 -3
tomwer/core/process/reconstruction/test/test_darkref_copy.py +7 -7
tomwer/core/process/reconstruction/test/test_saaxis.py +3 -4
tomwer/core/process/reconstruction/test/test_sadeltabeta.py +2 -2
tomwer/core/process/stitching/nabustitcher.py +13 -12
tomwer/core/process/task.py +34 -26
tomwer/core/process/test/test_axis.py +13 -12
tomwer/core/process/test/test_dark_and_flat.py +10 -7
tomwer/core/process/test/test_data_transfer.py +10 -8
tomwer/core/process/test/test_nabu.py +14 -6
tomwer/core/process/test/test_normalization.py +4 -4
tomwer/core/scan/blissscan.py +3 -3
tomwer/core/scan/edfscan.py +13 -10
tomwer/core/scan/hdf5scan.py +19 -530
tomwer/core/scan/nxtomoscan.py +534 -0
tomwer/core/scan/scanbase.py +72 -44
tomwer/core/scan/scanfactory.py +13 -13
tomwer/core/scan/test/test_edf.py +2 -2
tomwer/core/scan/test/test_future_scan.py +3 -3
tomwer/core/scan/test/test_h5.py +18 -16
tomwer/core/scan/test/test_process_registration.py +4 -40
tomwer/core/scan/test/test_scan.py +5 -78
tomwer/core/settings.py +22 -2
tomwer/core/test/test_scanutils.py +8 -7
tomwer/core/test/test_utils.py +35 -28
tomwer/core/tomwer_object.py +1 -1
tomwer/core/utils/__init__.py +0 -466
tomwer/core/utils/deprecation.py +1 -1
tomwer/core/utils/dictutils.py +14 -0
tomwer/core/utils/lbsram.py +35 -0
tomwer/core/utils/nxtomoutils.py +1 -1
tomwer/core/utils/scanutils.py +6 -6
tomwer/core/utils/spec.py +263 -0
tomwer/core/volume/edfvolume.py +6 -6
tomwer/core/volume/hdf5volume.py +6 -6
tomwer/core/volume/jp2kvolume.py +6 -6
tomwer/core/volume/rawvolume.py +6 -6
tomwer/core/volume/tiffvolume.py +12 -12
tomwer/core/volume/volumefactory.py +2 -2
tomwer/gui/cluster/slurm.py +274 -65
tomwer/gui/cluster/supervisor.py +12 -0
tomwer/gui/cluster/test/test_cluster.py +14 -2
tomwer/gui/cluster/test/test_supervisor.py +3 -3
tomwer/gui/configuration/__init__.py +0 -0
tomwer/gui/{reconstruction/nabu → configuration}/action.py +1 -32
tomwer/gui/configuration/level.py +22 -0
tomwer/gui/control/actions.py +54 -0
tomwer/gui/control/datalist.py +83 -16
tomwer/gui/control/datalistener.py +4 -16
tomwer/gui/control/datawatcher/controlwidget.py +2 -4
tomwer/gui/control/datawatcher/datawatcher.py +1 -24
tomwer/gui/control/{email.py → emailnotifier.py} +9 -18
tomwer/gui/control/history.py +2 -2
tomwer/gui/control/observations.py +2 -2
tomwer/gui/control/reducedarkflatselector.py +9 -9
tomwer/gui/control/selectorwidgetbase.py +36 -9
tomwer/gui/control/serie/seriecreator.py +5 -22
tomwer/gui/control/test/test_email.py +1 -1
tomwer/gui/control/test/test_scanvalidator.py +6 -5
tomwer/gui/control/test/test_single_tomo_obj.py +3 -3
tomwer/gui/control/tomoobjdisplaymode.py +8 -0
tomwer/gui/debugtools/datasetgenerator.py +3 -3
tomwer/gui/edit/dkrfpatch.py +20 -26
tomwer/gui/edit/imagekeyeditor.py +11 -12
tomwer/gui/edit/nxtomoeditor.py +111 -44
tomwer/gui/edit/nxtomowarmer.py +7 -6
tomwer/gui/edit/test/test_dkrf_patch.py +13 -13
tomwer/gui/edit/test/test_image_key_editor.py +3 -3
tomwer/gui/edit/test/test_nx_editor.py +40 -16
tomwer/gui/icat/__init__.py +0 -0
tomwer/gui/icat/createscreenshots.py +80 -0
tomwer/gui/icat/gallery.py +214 -0
tomwer/gui/icat/publish.py +187 -0
tomwer/gui/imagefromfile.py +2 -2
tomwer/gui/qfolderdialog.py +24 -1
tomwer/gui/reconstruction/axis/CompareImages.py +88 -168
tomwer/gui/reconstruction/axis/axis.py +171 -57
tomwer/gui/reconstruction/axis/radioaxis.py +122 -257
tomwer/gui/reconstruction/darkref/darkrefcopywidget.py +3 -2
tomwer/gui/reconstruction/darkref/darkrefwidget.py +2 -1
tomwer/gui/reconstruction/nabu/castvolume.py +14 -3
tomwer/gui/reconstruction/nabu/check.py +9 -9
tomwer/gui/reconstruction/nabu/helical.py +29 -12
tomwer/gui/reconstruction/nabu/nabuconfig/base.py +2 -4
tomwer/gui/reconstruction/nabu/nabuconfig/nabuconfig.py +2 -1
tomwer/gui/reconstruction/nabu/nabuconfig/output.py +126 -35
tomwer/gui/reconstruction/nabu/nabuconfig/phase.py +39 -32
tomwer/gui/reconstruction/nabu/nabuconfig/preprocessing.py +222 -31
tomwer/gui/reconstruction/nabu/nabuconfig/reconstruction.py +57 -27
tomwer/gui/reconstruction/nabu/nabuflow.py +12 -20
tomwer/gui/reconstruction/nabu/slices.py +10 -11
tomwer/gui/reconstruction/nabu/volume.py +22 -10
tomwer/gui/reconstruction/normalization/intensity.py +18 -48
tomwer/gui/reconstruction/saaxis/corrangeselector.py +8 -24
tomwer/gui/reconstruction/saaxis/dimensionwidget.py +1 -1
tomwer/gui/reconstruction/saaxis/saaxis.py +9 -21
tomwer/gui/reconstruction/sadeltabeta/saadeltabeta.py +45 -12
tomwer/gui/reconstruction/scores/control.py +2 -9
tomwer/gui/reconstruction/scores/scoreplot.py +13 -11
tomwer/gui/reconstruction/test/test_axis.py +41 -16
tomwer/gui/reconstruction/test/test_nabu.py +31 -9
tomwer/gui/reconstruction/test/test_saaxis.py +3 -3
tomwer/gui/reconstruction/test/test_sadeltabeta.py +12 -2
tomwer/gui/settings.py +5 -28
tomwer/gui/stackplot.py +2 -5
tomwer/gui/stitching/action.py +49 -0
tomwer/gui/stitching/config/axisparams.py +7 -24
tomwer/gui/stitching/config/output.py +10 -8
tomwer/gui/stitching/config/positionoveraxis.py +22 -23
tomwer/gui/stitching/normalization.py +117 -0
tomwer/gui/stitching/stitchandbackground.py +4 -6
tomwer/gui/stitching/stitching.py +267 -45
tomwer/gui/stitching/stitching_preview.py +62 -55
tomwer/gui/stitching/stitching_raw.py +13 -12
tomwer/gui/stitching/z_stitching/fineestimation.py +0 -60
tomwer/gui/utils/buttons.py +112 -29
tomwer/gui/utils/inputwidget.py +43 -25
tomwer/gui/utils/lineselector/lineselector.py +1 -1
tomwer/gui/utils/scandescription.py +4 -0
tomwer/gui/utils/step.py +144 -0
tomwer/gui/utils/unitsystem.py +2 -5
tomwer/gui/utils/vignettes.py +176 -15
tomwer/gui/visualization/dataviewer.py +48 -35
tomwer/gui/visualization/diffviewer/diffviewer.py +7 -16
tomwer/gui/visualization/diffviewer/shiftwidget.py +2 -5
tomwer/gui/visualization/scanoverview.py +1 -1
tomwer/gui/visualization/sinogramviewer.py +20 -36
tomwer/gui/visualization/test/test_diffviewer.py +3 -3
tomwer/gui/visualization/test/test_nx_tomo_metadata_viewer.py +4 -4
tomwer/gui/visualization/test/test_sinogramviewer.py +2 -2
tomwer/gui/visualization/test/test_stacks.py +3 -3
tomwer/gui/visualization/test/test_volumeviewer.py +65 -67
tomwer/gui/visualization/volumeviewer.py +114 -113
tomwer/io/utils/h5pyutils.py +3 -3
tomwer/io/utils/raw_and_processed_data.py +84 -0
tomwer/io/utils/tomoobj.py +4 -6
tomwer/io/utils/utils.py +7 -7
tomwer/resources/gui/icons/parameters.svg +1 -1
tomwer/resources/gui/icons/ruler.png +0 -0
tomwer/resources/gui/icons/ruler.svg +273 -0
tomwer/resources/gui/icons/short_description.png +0 -0
tomwer/resources/gui/icons/short_description.svg +58 -0
tomwer/resources/gui/icons/url.png +0 -0
tomwer/resources/gui/icons/url.svg +58 -0
tomwer/resources/gui/illustrations/no_rot.svg +1 -1
tomwer/synctools/stacks/edit/darkflatpatch.py +19 -14
tomwer/synctools/stacks/edit/imagekeyeditor.py +2 -2
tomwer/synctools/stacks/reconstruction/axis.py +4 -4
tomwer/synctools/stacks/reconstruction/castvolume.py +22 -7
tomwer/synctools/stacks/reconstruction/dkrefcopy.py +25 -20
tomwer/synctools/stacks/reconstruction/nabu.py +2 -2
tomwer/synctools/stacks/reconstruction/normalization.py +2 -2
tomwer/synctools/stacks/reconstruction/saaxis.py +2 -2
tomwer/synctools/stacks/reconstruction/sadeltabeta.py +2 -2
tomwer/synctools/test/test_darkRefs.py +7 -58
tomwer/synctools/test/test_foldertransfer.py +6 -6
tomwer/synctools/utils/scanstages.py +6 -6
tomwer/tests/conftest.py +34 -0
tomwer/tests/datasets.py +13 -0
tomwer/tests/test_scripts.py +91 -41
tomwer/tests/utils.py +5 -0
tomwer/third_part/WaitingOverlay.py +110 -0
tomwer/third_part/__init__.py +0 -0
tomwer/version.py +2 -2
tomwer-1.3.12-py3.11-nspkg.pth +1 -0
{tomwer-1.2.1.dist-info → tomwer-1.3.12.dist-info}/METADATA +73 -58
{tomwer-1.2.1.dist-info → tomwer-1.3.12.dist-info}/RECORD +287 -286
{tomwer-1.2.1.dist-info → tomwer-1.3.12.dist-info}/WHEEL +1 -1
orangecontrib/tomwer/widgets/reconstruction/TofuOW.py +0 -197
orangecontrib/tomwer/widgets/reconstruction/icons/XY_lamino.svg +0 -168
orangecontrib/tomwer/widgets/reconstruction/icons/XZ_lamino.svg +0 -275
orangecontrib/tomwer/widgets/reconstruction/icons/YZ_lamino.svg +0 -182
tomwer/app/lamino.py +0 -143
tomwer/core/process/reconstruction/lamino/__init__.py +0 -1
tomwer/core/process/reconstruction/lamino/tofu.py +0 -1000
tomwer/core/process/test/test_lamino.py +0 -76
tomwer/core/test/test_lamino.py +0 -92
tomwer/gui/reconstruction/lamino/__init__.py +0 -31
tomwer/gui/reconstruction/lamino/tofu/TofuOptionLoader.py +0 -107
tomwer/gui/reconstruction/lamino/tofu/__init__.py +0 -1
tomwer/gui/reconstruction/lamino/tofu/misc.py +0 -148
tomwer/gui/reconstruction/lamino/tofu/projections.py +0 -896
tomwer/gui/reconstruction/lamino/tofu/settings.py +0 -75
tomwer/gui/reconstruction/lamino/tofu/tofu.py +0 -432
tomwer/gui/reconstruction/lamino/tofu/tofuexpert.py +0 -567
tomwer/gui/reconstruction/lamino/tofu/tofuoutput.py +0 -760
tomwer/gui/reconstruction/test/test_lamino.py +0 -189
tomwer/resources/gui/icons/esrf_1.svg +0 -307
tomwer/resources/gui/icons/lamino_parameters.svg +0 -70
tomwer/resources/gui/icons/triangle.svg +0 -80
tomwer/resources/gui/illustrations/lamino_angle.png +0 -0
tomwer/resources/gui/illustrations/lamino_angle.svg +0 -509
tomwer/resources/gui/illustrations/lamino_beta_angle.png +0 -0
tomwer/resources/gui/illustrations/lamino_beta_angle.svg +0 -97
tomwer/resources/gui/illustrations/lamino_theta_angle.png +0 -0
tomwer/resources/gui/illustrations/lamino_theta_angle.svg +0 -368
tomwer/resources/gui/illustrations/manual_slice.png +0 -0
tomwer/resources/gui/illustrations/manual_slice.svg +0 -221
tomwer/resources/gui/illustrations/psi_angle.png +0 -0
tomwer/resources/gui/illustrations/psi_angle.svg +0 -479
tomwer/resources/gui/illustrations/rotation_center.png +0 -0
tomwer/resources/gui/illustrations/rotation_center.svg +0 -276
tomwer/resources/gui/illustrations/slice_stack.png +0 -0
tomwer/resources/gui/illustrations/slice_stack.svg +0 -266
tomwer/resources/gui/illustrations/xy_slice.png +0 -0
tomwer/resources/gui/illustrations/xy_slice.svg +0 -269
tomwer/resources/gui/illustrations/xz_slice.png +0 -0
tomwer/resources/gui/illustrations/xz_slice.svg +0 -270
tomwer/resources/gui/illustrations/yz_slice.png +0 -0
tomwer/resources/gui/illustrations/yz_slice.svg +0 -270
tomwer/synctools/stacks/reconstruction/lamino.py +0 -233
tomwer/synctools/test/test_scanstages.py +0 -162
tomwer/tests/utils/__init__.py +0 -247
tomwer/tests/utils/utilstest.py +0 -220
tomwer-1.2.1-py3.11-nspkg.pth +0 -1
/tomwer/core/process/control/{email.py → emailnotifier.py} +0 -0
{tomwer-1.2.1.dist-info → tomwer-1.3.12.dist-info}/LICENSE +0 -0
{tomwer-1.2.1.dist-info → tomwer-1.3.12.dist-info}/entry_points.txt +0 -0
{tomwer-1.2.1.dist-info → tomwer-1.3.12.dist-info}/namespace_packages.txt +0 -0
{tomwer-1.2.1.dist-info → tomwer-1.3.12.dist-info}/top_level.txt +0 -0

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tomwer 1.2.1__py3-none-any.whl → 1.3.12__py3-none-any.whl

tomwer 1.2.1py3-none-any.whl → 1.3.12py3-none-any.whl