tomwer 1.2.1__py3-none-any.whl → 1.3.12__py3-none-any.whl

orangecontrib/tomwer/widgets/reconstruction/icons/YZ_lamino.svg

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tomwer/app/lamino.py

@@ -1,143 +0,0 @@
-#!/usr/bin/env python
-# -*- coding: utf-8 -*-
-
-import argparse
-import logging
-import os
-import signal
-import sys
-
-from silx.gui import qt
-
-from tomwer.core.process.reconstruction.lamino.tofu import LaminoReconstructionTask
-from tomwer.core.scan.scanbase import TomwerScanBase
-from tomwer.core.scan.scanfactory import ScanFactory
-from tomwer.core.utils.resource import increase_max_number_file
-from tomwer.gui import icons
-from tomwer.gui.reconstruction.lamino.tofu import TofuWindow
-from tomwer.gui.utils.splashscreen import getMainSplashScreen
-
-_logger = logging.getLogger(__name__)
-# logging.getLogger().setLevel(logging.INFO)
-
-
-def getinputinfo():
-    return "tomwer lamino [scanDir]"
-
-
-def sigintHandler(*args):
-    """Handler for the SIGINT signal."""
-    qt.QApplication.quit()
-
-
-def main(argv):
-    parser = argparse.ArgumentParser(description=__doc__)
-    parser.add_argument(
-        "scan_path", help="Data file to process (edf files only for now)"
-    )
-    parser.add_argument(
-        "--debug",
-        dest="debug",
-        action="store_true",
-        default=False,
-        help="Set logging system in debug mode",
-    )
-    parser.add_argument(
-        "--dry-run",
-        dest="dry_run",
-        action="store_true",
-        default=False,
-        help="Will not apply the tofu process but only display the command used"
-        "to call tofu",
-    )
-    options = parser.parse_args(argv[1:])
-
-    increase_max_number_file()
-
-    global app  # QApplication must be global to avoid seg fault on quit
-    app = qt.QApplication.instance() or qt.QApplication(["tomwer"])
-
-    qt.QLocale.setDefault(qt.QLocale(qt.QLocale.English))
-    qt.QLocale.setDefault(qt.QLocale.c())
-
-    signal.signal(signal.SIGINT, sigintHandler)
-    sys.excepthook = qt.exceptionHandler
-
-    timer = qt.QTimer()
-    timer.start(500)
-    # Application have to wake up Python interpreter, else SIGINT is not
-    # catched
-    timer.timeout.connect(lambda: None)
-
-    splash = getMainSplashScreen()
-    options.scan_path = os.path.abspath(options.scan_path.rstrip(os.path.sep))
-    scan = ScanFactory.create_scan_object(scan_path=options.scan_path)
-    scan.set_process_index_frm_tomwer_process_file()
-    dialog = ToFuDialog(parent=None, scan=scan)
-    # dialog.tofuWidget._mainWidget._tabs._outputWidget.setOutput('')
-    # dialog.tofuWidget._mainWidget._tabs._inputWidget.setWhenApplyFFC('preprocessing')
-    # dialog.tofuWidget._mainWidget._tabs._inputWidget.setHalfAcquisition(True)
-    dialog._setDryRun(options.dry_run)
-    splash.finish(dialog)
-    dialog.exec_()
-
-
-class ToFuDialog(qt.QDialog):
-    """Simple dialog to launch the lamino reconstruction using tofu"""
-
-    def __init__(self, parent, scan):
-        assert isinstance(scan, TomwerScanBase)
-        qt.QDialog.__init__(self, parent)
-        self._scan = scan
-        self._dry_run = False
-
-        self.setLayout(qt.QVBoxLayout())
-        self.setWindowTitle("Lamino reconstruction using tofu")
-
-        types = qt.QDialogButtonBox.Ok | qt.QDialogButtonBox.Cancel
-        self._buttons = qt.QDialogButtonBox(parent=self)
-        self._buttons.setStandardButtons(types)
-        self.tofuWidget = TofuWindow(parent=self)
-        self.tofuWidget.loadFromScan(self._scan.path)
-        self.layout().addWidget(self.tofuWidget)
-        self.layout().addWidget(self._buttons)
-
-        self._buttons.button(qt.QDialogButtonBox.Ok).clicked.connect(self.accept)
-        self._buttons.button(qt.QDialogButtonBox.Cancel).clicked.connect(self.reject)
-
-        self.setWindowIcon(icons.getQIcon("tomwer"))
-
-    def accept(self):
-        recons_param = self.tofuWidget.getParameters()
-        reco_add_options = self.tofuWidget.getAdditionalRecoOptions()
-        preprocess_add_options = self.tofuWidget.getAdditionalPreprocessOptions()
-        delete_existing = self.tofuWidget.removeOutputDir()
-        self.tofuWidget.setEnabled(False)
-        qt.QApplication.processEvents()
-        qt.QApplication.setOverrideCursor(qt.Qt.WaitCursor)
-        self._reconsProcess = LaminoReconstructionTask(
-            inputs={
-                "scan": self._scan,
-                "serialize_output_data": False,
-            }
-        )
-        self._reconsProcess.set_configuration(
-            (preprocess_add_options, reco_add_options)
-        )
-        self._reconsProcess.delete_existing = delete_existing
-        self._reconsProcess.reconstruction_parameters = recons_param
-        if self._dry_run:
-            self._reconsProcess.dry_run = self._dry_run
-        try:
-            self._reconsProcess.run()
-        except Exception as e:
-            _logger.error(e)
-        self.tofuWidget.setEnabled(True)
-        qt.QApplication.restoreOverrideCursor()
-
-    def _setDryRun(self, forTest):
-        self._dry_run = forTest
-
-
-if __name__ == "__main__":
-    main(sys.argv)

tomwer/core/process/reconstruction/lamino/__init__.py

@@ -1 +0,0 @@
-from .tofu import LaminoReconstructionTask  # noqa F401