tomwer 1.2.1__py3-none-any.whl → 1.3.12__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (334) hide show
  1. orangecontrib/tomwer/tutorials/icat_publication.ows +58 -0
  2. orangecontrib/tomwer/widgets/__init__.py +11 -11
  3. orangecontrib/tomwer/widgets/control/DataDiscoveryOW.py +2 -2
  4. orangecontrib/tomwer/widgets/control/DataListOW.py +9 -7
  5. orangecontrib/tomwer/widgets/control/DataListenerOW.py +6 -6
  6. orangecontrib/tomwer/widgets/control/DataSelectorOW.py +21 -10
  7. orangecontrib/tomwer/widgets/control/DataValidatorOW.py +6 -6
  8. orangecontrib/tomwer/widgets/control/EDF2NXTomomillOW.py +24 -7
  9. orangecontrib/tomwer/widgets/control/EmailOW.py +4 -4
  10. orangecontrib/tomwer/widgets/control/NXTomomillMixIn.py +3 -3
  11. orangecontrib/tomwer/widgets/control/NXTomomillOW.py +64 -23
  12. orangecontrib/tomwer/widgets/control/NXtomoConcatenate.py +20 -8
  13. orangecontrib/tomwer/widgets/control/NotifierOW.py +1 -0
  14. orangecontrib/tomwer/widgets/control/SingleTomoObjOW.py +6 -6
  15. orangecontrib/tomwer/widgets/control/VolumeSelector.py +7 -4
  16. orangecontrib/tomwer/widgets/control/VolumeSymLinkOW.py +182 -182
  17. orangecontrib/tomwer/widgets/debugtools/DatasetGeneratorOW.py +5 -5
  18. orangecontrib/tomwer/widgets/edit/DarkFlatPatchOW.py +4 -4
  19. orangecontrib/tomwer/widgets/edit/ImageKeyEditorOW.py +3 -3
  20. orangecontrib/tomwer/widgets/edit/ImageKeyUpgraderOW.py +8 -1
  21. orangecontrib/tomwer/widgets/edit/NXtomoEditorOW.py +3 -3
  22. orangecontrib/tomwer/widgets/edit/test/test_nxtomo_editor.py +3 -3
  23. orangecontrib/tomwer/widgets/icat/PublishProcessedDataOW.py +115 -0
  24. orangecontrib/tomwer/widgets/icat/RawDataScreenshotCreatorOW.py +98 -0
  25. orangecontrib/tomwer/widgets/icat/SaveToGalleryAndPublishOW.py +129 -0
  26. orangecontrib/tomwer/widgets/icat/__init__.py +13 -0
  27. orangecontrib/tomwer/widgets/icat/icons/add_gallery.png +0 -0
  28. orangecontrib/tomwer/widgets/icat/icons/add_gallery.svg +82 -0
  29. orangecontrib/tomwer/widgets/icat/icons/publish_processed_data.png +0 -0
  30. orangecontrib/tomwer/widgets/icat/icons/publish_processed_data.svg +95 -0
  31. orangecontrib/tomwer/widgets/icat/icons/raw_screenshots.png +0 -0
  32. orangecontrib/tomwer/widgets/icat/icons/raw_screenshots.svg +143 -0
  33. orangecontrib/tomwer/widgets/icons/tomwer_data_portal.png +0 -0
  34. orangecontrib/tomwer/widgets/icons/tomwer_data_portal.svg +76 -0
  35. orangecontrib/tomwer/widgets/reconstruction/AxisOW.py +22 -20
  36. orangecontrib/tomwer/widgets/reconstruction/CastNabuVolumeOW.py +19 -3
  37. orangecontrib/tomwer/widgets/reconstruction/NabuHelicalPrepareWeightsDoubleOW.py +184 -169
  38. orangecontrib/tomwer/widgets/reconstruction/NabuOW.py +23 -0
  39. orangecontrib/tomwer/widgets/reconstruction/NabuVolumeOW.py +39 -5
  40. orangecontrib/tomwer/widgets/reconstruction/SAAxisOW.py +18 -22
  41. orangecontrib/tomwer/widgets/reconstruction/SADeltaBetaOW.py +18 -26
  42. orangecontrib/tomwer/widgets/reconstruction/SinoNormOW.py +15 -19
  43. orangecontrib/tomwer/widgets/visualization/DataViewerOW.py +9 -9
  44. orangecontrib/tomwer/widgets/visualization/DiffViewerOW.py +1 -1
  45. orangecontrib/tomwer/widgets/visualization/LivesliceOW.py +1 -1
  46. orangecontrib/tomwer/widgets/visualization/NXtomoMetadataViewerOW.py +3 -3
  47. orangecontrib/tomwer/widgets/visualization/SinogramViewerOW.py +0 -1
  48. orangecontrib/tomwer/widgets/visualization/VolumeViewerOW.py +3 -29
  49. tomwer/__main__.py +7 -64
  50. tomwer/app/axis.py +3 -3
  51. tomwer/app/canvas.py +8 -0
  52. tomwer/app/canvas_launcher/config.py +16 -14
  53. tomwer/app/canvas_launcher/environ.py +1 -0
  54. tomwer/app/canvas_launcher/mainwindow.py +4 -1
  55. tomwer/app/darkref.py +1 -1
  56. tomwer/app/darkrefpatch.py +1 -1
  57. tomwer/app/diffframe.py +3 -3
  58. tomwer/app/imagekeyeditor.py +5 -5
  59. tomwer/app/imagekeyupgrader.py +5 -5
  60. tomwer/app/intensitynormalization.py +14 -13
  61. tomwer/app/{saaxis.py → multicor.py} +3 -3
  62. tomwer/app/{sadeltabeta.py → multipag.py} +3 -3
  63. tomwer/app/nabuapp.py +0 -11
  64. tomwer/app/radiostack.py +6 -4
  65. tomwer/app/samplemoved.py +3 -2
  66. tomwer/app/scanviewer.py +4 -2
  67. tomwer/app/sinogramviewer.py +3 -2
  68. tomwer/app/slicestack.py +3 -2
  69. tomwer/app/zstitching.py +88 -6
  70. tomwer/core/cluster/cluster.py +26 -0
  71. tomwer/core/log/logger.py +7 -5
  72. tomwer/core/process/conditions/filters.py +1 -1
  73. tomwer/core/process/control/datalistener/datalistener.py +19 -14
  74. tomwer/core/process/control/datawatcher/edfdwprocess.py +0 -9
  75. tomwer/core/process/control/nxtomoconcatenate.py +13 -13
  76. tomwer/core/process/control/nxtomomill.py +92 -34
  77. tomwer/core/process/control/scantransfer.py +20 -43
  78. tomwer/core/process/control/scanvalidator.py +3 -2
  79. tomwer/core/process/control/test/test_concatenate_nxtomos.py +9 -9
  80. tomwer/core/process/control/test/test_email.py +4 -4
  81. tomwer/core/process/control/test/test_h52nx_process.py +59 -7
  82. tomwer/core/process/control/test/test_volume_link.py +64 -64
  83. tomwer/core/process/control/timer.py +1 -1
  84. tomwer/core/process/control/volumesymlink.py +200 -200
  85. tomwer/core/process/edit/darkflatpatch.py +14 -15
  86. tomwer/core/process/edit/imagekeyeditor.py +41 -39
  87. tomwer/core/process/icat/__init__.py +0 -0
  88. tomwer/core/process/icat/createscreenshots.py +100 -0
  89. tomwer/core/process/icat/gallery.py +377 -0
  90. tomwer/core/process/icat/icatbase.py +36 -0
  91. tomwer/core/process/icat/publish.py +228 -0
  92. tomwer/core/process/icat/screenshots.py +27 -0
  93. tomwer/core/process/output.py +52 -0
  94. tomwer/core/process/reconstruction/axis/axis.py +280 -69
  95. tomwer/core/process/reconstruction/axis/mode.py +163 -48
  96. tomwer/core/process/reconstruction/axis/params.py +29 -21
  97. tomwer/core/process/reconstruction/darkref/darkrefs.py +41 -127
  98. tomwer/core/process/reconstruction/darkref/darkrefscopy.py +4 -3
  99. tomwer/core/process/reconstruction/darkref/params.py +1 -1
  100. tomwer/core/process/reconstruction/nabu/castvolume.py +4 -4
  101. tomwer/core/process/reconstruction/nabu/helical.py +9 -5
  102. tomwer/core/process/reconstruction/nabu/nabucommon.py +71 -78
  103. tomwer/core/process/reconstruction/nabu/nabuscores.py +425 -53
  104. tomwer/core/process/reconstruction/nabu/nabuslices.py +114 -93
  105. tomwer/core/process/reconstruction/nabu/nabuvolume.py +54 -27
  106. tomwer/core/process/reconstruction/nabu/plane.py +9 -0
  107. tomwer/core/process/reconstruction/nabu/settings.py +2 -2
  108. tomwer/core/process/reconstruction/nabu/utils.py +164 -26
  109. tomwer/core/process/reconstruction/output.py +108 -0
  110. tomwer/core/process/reconstruction/saaxis/saaxis.py +238 -264
  111. tomwer/core/process/reconstruction/sadeltabeta/sadeltabeta.py +151 -87
  112. tomwer/core/process/reconstruction/scores/params.py +7 -4
  113. tomwer/core/process/reconstruction/scores/scores.py +13 -0
  114. tomwer/core/process/reconstruction/test/test_axis_params.py +2 -2
  115. tomwer/core/process/reconstruction/test/test_darkref.py +3 -3
  116. tomwer/core/process/reconstruction/test/test_darkref_copy.py +7 -7
  117. tomwer/core/process/reconstruction/test/test_saaxis.py +3 -4
  118. tomwer/core/process/reconstruction/test/test_sadeltabeta.py +2 -2
  119. tomwer/core/process/stitching/nabustitcher.py +13 -12
  120. tomwer/core/process/task.py +34 -26
  121. tomwer/core/process/test/test_axis.py +13 -12
  122. tomwer/core/process/test/test_dark_and_flat.py +10 -7
  123. tomwer/core/process/test/test_data_transfer.py +10 -8
  124. tomwer/core/process/test/test_nabu.py +14 -6
  125. tomwer/core/process/test/test_normalization.py +4 -4
  126. tomwer/core/scan/blissscan.py +3 -3
  127. tomwer/core/scan/edfscan.py +13 -10
  128. tomwer/core/scan/hdf5scan.py +19 -530
  129. tomwer/core/scan/nxtomoscan.py +534 -0
  130. tomwer/core/scan/scanbase.py +72 -44
  131. tomwer/core/scan/scanfactory.py +13 -13
  132. tomwer/core/scan/test/test_edf.py +2 -2
  133. tomwer/core/scan/test/test_future_scan.py +3 -3
  134. tomwer/core/scan/test/test_h5.py +18 -16
  135. tomwer/core/scan/test/test_process_registration.py +4 -40
  136. tomwer/core/scan/test/test_scan.py +5 -78
  137. tomwer/core/settings.py +22 -2
  138. tomwer/core/test/test_scanutils.py +8 -7
  139. tomwer/core/test/test_utils.py +35 -28
  140. tomwer/core/tomwer_object.py +1 -1
  141. tomwer/core/utils/__init__.py +0 -466
  142. tomwer/core/utils/deprecation.py +1 -1
  143. tomwer/core/utils/dictutils.py +14 -0
  144. tomwer/core/utils/lbsram.py +35 -0
  145. tomwer/core/utils/nxtomoutils.py +1 -1
  146. tomwer/core/utils/scanutils.py +6 -6
  147. tomwer/core/utils/spec.py +263 -0
  148. tomwer/core/volume/edfvolume.py +6 -6
  149. tomwer/core/volume/hdf5volume.py +6 -6
  150. tomwer/core/volume/jp2kvolume.py +6 -6
  151. tomwer/core/volume/rawvolume.py +6 -6
  152. tomwer/core/volume/tiffvolume.py +12 -12
  153. tomwer/core/volume/volumefactory.py +2 -2
  154. tomwer/gui/cluster/slurm.py +274 -65
  155. tomwer/gui/cluster/supervisor.py +12 -0
  156. tomwer/gui/cluster/test/test_cluster.py +14 -2
  157. tomwer/gui/cluster/test/test_supervisor.py +3 -3
  158. tomwer/gui/configuration/__init__.py +0 -0
  159. tomwer/gui/{reconstruction/nabu → configuration}/action.py +1 -32
  160. tomwer/gui/configuration/level.py +22 -0
  161. tomwer/gui/control/actions.py +54 -0
  162. tomwer/gui/control/datalist.py +83 -16
  163. tomwer/gui/control/datalistener.py +4 -16
  164. tomwer/gui/control/datawatcher/controlwidget.py +2 -4
  165. tomwer/gui/control/datawatcher/datawatcher.py +1 -24
  166. tomwer/gui/control/{email.py → emailnotifier.py} +9 -18
  167. tomwer/gui/control/history.py +2 -2
  168. tomwer/gui/control/observations.py +2 -2
  169. tomwer/gui/control/reducedarkflatselector.py +9 -9
  170. tomwer/gui/control/selectorwidgetbase.py +36 -9
  171. tomwer/gui/control/serie/seriecreator.py +5 -22
  172. tomwer/gui/control/test/test_email.py +1 -1
  173. tomwer/gui/control/test/test_scanvalidator.py +6 -5
  174. tomwer/gui/control/test/test_single_tomo_obj.py +3 -3
  175. tomwer/gui/control/tomoobjdisplaymode.py +8 -0
  176. tomwer/gui/debugtools/datasetgenerator.py +3 -3
  177. tomwer/gui/edit/dkrfpatch.py +20 -26
  178. tomwer/gui/edit/imagekeyeditor.py +11 -12
  179. tomwer/gui/edit/nxtomoeditor.py +111 -44
  180. tomwer/gui/edit/nxtomowarmer.py +7 -6
  181. tomwer/gui/edit/test/test_dkrf_patch.py +13 -13
  182. tomwer/gui/edit/test/test_image_key_editor.py +3 -3
  183. tomwer/gui/edit/test/test_nx_editor.py +40 -16
  184. tomwer/gui/icat/__init__.py +0 -0
  185. tomwer/gui/icat/createscreenshots.py +80 -0
  186. tomwer/gui/icat/gallery.py +214 -0
  187. tomwer/gui/icat/publish.py +187 -0
  188. tomwer/gui/imagefromfile.py +2 -2
  189. tomwer/gui/qfolderdialog.py +24 -1
  190. tomwer/gui/reconstruction/axis/CompareImages.py +88 -168
  191. tomwer/gui/reconstruction/axis/axis.py +171 -57
  192. tomwer/gui/reconstruction/axis/radioaxis.py +122 -257
  193. tomwer/gui/reconstruction/darkref/darkrefcopywidget.py +3 -2
  194. tomwer/gui/reconstruction/darkref/darkrefwidget.py +2 -1
  195. tomwer/gui/reconstruction/nabu/castvolume.py +14 -3
  196. tomwer/gui/reconstruction/nabu/check.py +9 -9
  197. tomwer/gui/reconstruction/nabu/helical.py +29 -12
  198. tomwer/gui/reconstruction/nabu/nabuconfig/base.py +2 -4
  199. tomwer/gui/reconstruction/nabu/nabuconfig/nabuconfig.py +2 -1
  200. tomwer/gui/reconstruction/nabu/nabuconfig/output.py +126 -35
  201. tomwer/gui/reconstruction/nabu/nabuconfig/phase.py +39 -32
  202. tomwer/gui/reconstruction/nabu/nabuconfig/preprocessing.py +222 -31
  203. tomwer/gui/reconstruction/nabu/nabuconfig/reconstruction.py +57 -27
  204. tomwer/gui/reconstruction/nabu/nabuflow.py +12 -20
  205. tomwer/gui/reconstruction/nabu/slices.py +10 -11
  206. tomwer/gui/reconstruction/nabu/volume.py +22 -10
  207. tomwer/gui/reconstruction/normalization/intensity.py +18 -48
  208. tomwer/gui/reconstruction/saaxis/corrangeselector.py +8 -24
  209. tomwer/gui/reconstruction/saaxis/dimensionwidget.py +1 -1
  210. tomwer/gui/reconstruction/saaxis/saaxis.py +9 -21
  211. tomwer/gui/reconstruction/sadeltabeta/saadeltabeta.py +45 -12
  212. tomwer/gui/reconstruction/scores/control.py +2 -9
  213. tomwer/gui/reconstruction/scores/scoreplot.py +13 -11
  214. tomwer/gui/reconstruction/test/test_axis.py +41 -16
  215. tomwer/gui/reconstruction/test/test_nabu.py +31 -9
  216. tomwer/gui/reconstruction/test/test_saaxis.py +3 -3
  217. tomwer/gui/reconstruction/test/test_sadeltabeta.py +12 -2
  218. tomwer/gui/settings.py +5 -28
  219. tomwer/gui/stackplot.py +2 -5
  220. tomwer/gui/stitching/action.py +49 -0
  221. tomwer/gui/stitching/config/axisparams.py +7 -24
  222. tomwer/gui/stitching/config/output.py +10 -8
  223. tomwer/gui/stitching/config/positionoveraxis.py +22 -23
  224. tomwer/gui/stitching/normalization.py +117 -0
  225. tomwer/gui/stitching/stitchandbackground.py +4 -6
  226. tomwer/gui/stitching/stitching.py +267 -45
  227. tomwer/gui/stitching/stitching_preview.py +62 -55
  228. tomwer/gui/stitching/stitching_raw.py +13 -12
  229. tomwer/gui/stitching/z_stitching/fineestimation.py +0 -60
  230. tomwer/gui/utils/buttons.py +112 -29
  231. tomwer/gui/utils/inputwidget.py +43 -25
  232. tomwer/gui/utils/lineselector/lineselector.py +1 -1
  233. tomwer/gui/utils/scandescription.py +4 -0
  234. tomwer/gui/utils/step.py +144 -0
  235. tomwer/gui/utils/unitsystem.py +2 -5
  236. tomwer/gui/utils/vignettes.py +176 -15
  237. tomwer/gui/visualization/dataviewer.py +48 -35
  238. tomwer/gui/visualization/diffviewer/diffviewer.py +7 -16
  239. tomwer/gui/visualization/diffviewer/shiftwidget.py +2 -5
  240. tomwer/gui/visualization/scanoverview.py +1 -1
  241. tomwer/gui/visualization/sinogramviewer.py +20 -36
  242. tomwer/gui/visualization/test/test_diffviewer.py +3 -3
  243. tomwer/gui/visualization/test/test_nx_tomo_metadata_viewer.py +4 -4
  244. tomwer/gui/visualization/test/test_sinogramviewer.py +2 -2
  245. tomwer/gui/visualization/test/test_stacks.py +3 -3
  246. tomwer/gui/visualization/test/test_volumeviewer.py +65 -67
  247. tomwer/gui/visualization/volumeviewer.py +114 -113
  248. tomwer/io/utils/h5pyutils.py +3 -3
  249. tomwer/io/utils/raw_and_processed_data.py +84 -0
  250. tomwer/io/utils/tomoobj.py +4 -6
  251. tomwer/io/utils/utils.py +7 -7
  252. tomwer/resources/gui/icons/parameters.svg +1 -1
  253. tomwer/resources/gui/icons/ruler.png +0 -0
  254. tomwer/resources/gui/icons/ruler.svg +273 -0
  255. tomwer/resources/gui/icons/short_description.png +0 -0
  256. tomwer/resources/gui/icons/short_description.svg +58 -0
  257. tomwer/resources/gui/icons/url.png +0 -0
  258. tomwer/resources/gui/icons/url.svg +58 -0
  259. tomwer/resources/gui/illustrations/no_rot.svg +1 -1
  260. tomwer/synctools/stacks/edit/darkflatpatch.py +19 -14
  261. tomwer/synctools/stacks/edit/imagekeyeditor.py +2 -2
  262. tomwer/synctools/stacks/reconstruction/axis.py +4 -4
  263. tomwer/synctools/stacks/reconstruction/castvolume.py +22 -7
  264. tomwer/synctools/stacks/reconstruction/dkrefcopy.py +25 -20
  265. tomwer/synctools/stacks/reconstruction/nabu.py +2 -2
  266. tomwer/synctools/stacks/reconstruction/normalization.py +2 -2
  267. tomwer/synctools/stacks/reconstruction/saaxis.py +2 -2
  268. tomwer/synctools/stacks/reconstruction/sadeltabeta.py +2 -2
  269. tomwer/synctools/test/test_darkRefs.py +7 -58
  270. tomwer/synctools/test/test_foldertransfer.py +6 -6
  271. tomwer/synctools/utils/scanstages.py +6 -6
  272. tomwer/tests/conftest.py +34 -0
  273. tomwer/tests/datasets.py +13 -0
  274. tomwer/tests/test_scripts.py +91 -41
  275. tomwer/tests/utils.py +5 -0
  276. tomwer/third_part/WaitingOverlay.py +110 -0
  277. tomwer/third_part/__init__.py +0 -0
  278. tomwer/version.py +2 -2
  279. tomwer-1.3.12-py3.11-nspkg.pth +1 -0
  280. {tomwer-1.2.1.dist-info → tomwer-1.3.12.dist-info}/METADATA +73 -58
  281. {tomwer-1.2.1.dist-info → tomwer-1.3.12.dist-info}/RECORD +287 -286
  282. {tomwer-1.2.1.dist-info → tomwer-1.3.12.dist-info}/WHEEL +1 -1
  283. orangecontrib/tomwer/widgets/reconstruction/TofuOW.py +0 -197
  284. orangecontrib/tomwer/widgets/reconstruction/icons/XY_lamino.svg +0 -168
  285. orangecontrib/tomwer/widgets/reconstruction/icons/XZ_lamino.svg +0 -275
  286. orangecontrib/tomwer/widgets/reconstruction/icons/YZ_lamino.svg +0 -182
  287. tomwer/app/lamino.py +0 -143
  288. tomwer/core/process/reconstruction/lamino/__init__.py +0 -1
  289. tomwer/core/process/reconstruction/lamino/tofu.py +0 -1000
  290. tomwer/core/process/test/test_lamino.py +0 -76
  291. tomwer/core/test/test_lamino.py +0 -92
  292. tomwer/gui/reconstruction/lamino/__init__.py +0 -31
  293. tomwer/gui/reconstruction/lamino/tofu/TofuOptionLoader.py +0 -107
  294. tomwer/gui/reconstruction/lamino/tofu/__init__.py +0 -1
  295. tomwer/gui/reconstruction/lamino/tofu/misc.py +0 -148
  296. tomwer/gui/reconstruction/lamino/tofu/projections.py +0 -896
  297. tomwer/gui/reconstruction/lamino/tofu/settings.py +0 -75
  298. tomwer/gui/reconstruction/lamino/tofu/tofu.py +0 -432
  299. tomwer/gui/reconstruction/lamino/tofu/tofuexpert.py +0 -567
  300. tomwer/gui/reconstruction/lamino/tofu/tofuoutput.py +0 -760
  301. tomwer/gui/reconstruction/test/test_lamino.py +0 -189
  302. tomwer/resources/gui/icons/esrf_1.svg +0 -307
  303. tomwer/resources/gui/icons/lamino_parameters.svg +0 -70
  304. tomwer/resources/gui/icons/triangle.svg +0 -80
  305. tomwer/resources/gui/illustrations/lamino_angle.png +0 -0
  306. tomwer/resources/gui/illustrations/lamino_angle.svg +0 -509
  307. tomwer/resources/gui/illustrations/lamino_beta_angle.png +0 -0
  308. tomwer/resources/gui/illustrations/lamino_beta_angle.svg +0 -97
  309. tomwer/resources/gui/illustrations/lamino_theta_angle.png +0 -0
  310. tomwer/resources/gui/illustrations/lamino_theta_angle.svg +0 -368
  311. tomwer/resources/gui/illustrations/manual_slice.png +0 -0
  312. tomwer/resources/gui/illustrations/manual_slice.svg +0 -221
  313. tomwer/resources/gui/illustrations/psi_angle.png +0 -0
  314. tomwer/resources/gui/illustrations/psi_angle.svg +0 -479
  315. tomwer/resources/gui/illustrations/rotation_center.png +0 -0
  316. tomwer/resources/gui/illustrations/rotation_center.svg +0 -276
  317. tomwer/resources/gui/illustrations/slice_stack.png +0 -0
  318. tomwer/resources/gui/illustrations/slice_stack.svg +0 -266
  319. tomwer/resources/gui/illustrations/xy_slice.png +0 -0
  320. tomwer/resources/gui/illustrations/xy_slice.svg +0 -269
  321. tomwer/resources/gui/illustrations/xz_slice.png +0 -0
  322. tomwer/resources/gui/illustrations/xz_slice.svg +0 -270
  323. tomwer/resources/gui/illustrations/yz_slice.png +0 -0
  324. tomwer/resources/gui/illustrations/yz_slice.svg +0 -270
  325. tomwer/synctools/stacks/reconstruction/lamino.py +0 -233
  326. tomwer/synctools/test/test_scanstages.py +0 -162
  327. tomwer/tests/utils/__init__.py +0 -247
  328. tomwer/tests/utils/utilstest.py +0 -220
  329. tomwer-1.2.1-py3.11-nspkg.pth +0 -1
  330. /tomwer/core/process/control/{email.py → emailnotifier.py} +0 -0
  331. {tomwer-1.2.1.dist-info → tomwer-1.3.12.dist-info}/LICENSE +0 -0
  332. {tomwer-1.2.1.dist-info → tomwer-1.3.12.dist-info}/entry_points.txt +0 -0
  333. {tomwer-1.2.1.dist-info → tomwer-1.3.12.dist-info}/namespace_packages.txt +0 -0
  334. {tomwer-1.2.1.dist-info → tomwer-1.3.12.dist-info}/top_level.txt +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: tomwer
3
- Version: 1.2.1
3
+ Version: 1.3.12
4
4
  Summary: "tomography workflow tools"
5
5
  Home-page: https://gitlab.esrf.fr/tomotools/tomwer
6
6
  Author: data analysis unit
@@ -24,68 +24,59 @@ License-File: LICENSE
24
24
  Requires-Dist: numpy
25
25
  Requires-Dist: setuptools
26
26
  Requires-Dist: psutil
27
- Requires-Dist: silx (>=1.0)
28
- Requires-Dist: tomoscan (<2.0,>=1.3.0a4)
29
- Requires-Dist: nxtomomill (<1.0,>=0.12.2)
30
- Requires-Dist: processview (>=1.3)
31
- Requires-Dist: ewoks (>=0.1.1)
32
- Requires-Dist: sluurp (>=0.2.7)
27
+ Requires-Dist: silx[full] >=2.0
28
+ Requires-Dist: tomoscan >=2.0.0a11
29
+ Requires-Dist: nxtomo >=1.2.3rc1
30
+ Requires-Dist: nxtomomill >=1.0dev
31
+ Requires-Dist: processview >=1.3
32
+ Requires-Dist: ewoks >=0.1.1
33
+ Requires-Dist: ewoksorange ==0.6
34
+ Requires-Dist: sluurp >=0.3.3
33
35
  Requires-Dist: packaging
34
36
  Requires-Dist: flufl-lock
37
+ Requires-Dist: pyunitsystem >=1.1.0
35
38
  Provides-Extra: _dev_spec
36
39
  Requires-Dist: black ; extra == '_dev_spec'
37
40
  Requires-Dist: flake8 ; extra == '_dev_spec'
38
41
  Requires-Dist: timeout-decorator ; extra == '_dev_spec'
39
42
  Requires-Dist: pyopencl ; extra == '_dev_spec'
40
43
  Provides-Extra: _full_base
41
- Requires-Dist: Sphinx (>=4.0.0) ; extra == '_full_base'
42
- Requires-Dist: nbsphinx ; extra == '_full_base'
43
- Requires-Dist: pandoc ; extra == '_full_base'
44
- Requires-Dist: jupyterlab ; extra == '_full_base'
45
44
  Requires-Dist: orange-canvas-core ; extra == '_full_base'
46
45
  Requires-Dist: orange-widget-base ; extra == '_full_base'
47
- Requires-Dist: ewoks[orange] (>=0.1.1) ; extra == '_full_base'
46
+ Requires-Dist: ewoks[orange] >=0.1.1 ; extra == '_full_base'
48
47
  Requires-Dist: rsyncmanager ; extra == '_full_base'
49
48
  Requires-Dist: graypy ; extra == '_full_base'
50
49
  Requires-Dist: fabio ; extra == '_full_base'
51
- Requires-Dist: h5py (>=3) ; extra == '_full_base'
50
+ Requires-Dist: h5py >=3 ; extra == '_full_base'
52
51
  Requires-Dist: lxml ; extra == '_full_base'
53
52
  Requires-Dist: werkzeug ; extra == '_full_base'
54
53
  Requires-Dist: json-rpc ; extra == '_full_base'
55
54
  Requires-Dist: scipy ; extra == '_full_base'
56
55
  Requires-Dist: Pillow ; extra == '_full_base'
57
56
  Requires-Dist: glymur ; extra == '_full_base'
58
- Requires-Dist: pytest ; extra == '_full_base'
59
- Requires-Dist: pytest-asyncio ; extra == '_full_base'
60
57
  Requires-Dist: resource ; extra == '_full_base'
61
58
  Requires-Dist: tifffile ; extra == '_full_base'
62
- Requires-Dist: opencv-python ; extra == '_full_base'
63
59
  Requires-Dist: hdf5plugin ; extra == '_full_base'
60
+ Requires-Dist: pyicat-plus ; extra == '_full_base'
64
61
  Provides-Extra: dev
65
- Requires-Dist: Sphinx (>=4.0.0) ; extra == 'dev'
66
- Requires-Dist: nbsphinx ; extra == 'dev'
67
- Requires-Dist: pandoc ; extra == 'dev'
68
- Requires-Dist: jupyterlab ; extra == 'dev'
69
62
  Requires-Dist: orange-canvas-core ; extra == 'dev'
70
63
  Requires-Dist: orange-widget-base ; extra == 'dev'
71
- Requires-Dist: ewoks[orange] (>=0.1.1) ; extra == 'dev'
64
+ Requires-Dist: ewoks[orange] >=0.1.1 ; extra == 'dev'
72
65
  Requires-Dist: rsyncmanager ; extra == 'dev'
73
66
  Requires-Dist: graypy ; extra == 'dev'
74
67
  Requires-Dist: fabio ; extra == 'dev'
75
- Requires-Dist: h5py (>=3) ; extra == 'dev'
68
+ Requires-Dist: h5py >=3 ; extra == 'dev'
76
69
  Requires-Dist: lxml ; extra == 'dev'
77
70
  Requires-Dist: werkzeug ; extra == 'dev'
78
71
  Requires-Dist: json-rpc ; extra == 'dev'
79
72
  Requires-Dist: scipy ; extra == 'dev'
80
73
  Requires-Dist: Pillow ; extra == 'dev'
81
74
  Requires-Dist: glymur ; extra == 'dev'
82
- Requires-Dist: pytest ; extra == 'dev'
83
- Requires-Dist: pytest-asyncio ; extra == 'dev'
84
75
  Requires-Dist: resource ; extra == 'dev'
85
76
  Requires-Dist: tifffile ; extra == 'dev'
86
- Requires-Dist: opencv-python ; extra == 'dev'
87
77
  Requires-Dist: hdf5plugin ; extra == 'dev'
88
- Requires-Dist: nabu[full] (>=2023.2.0rc2) ; extra == 'dev'
78
+ Requires-Dist: pyicat-plus ; extra == 'dev'
79
+ Requires-Dist: nabu[full] >=2023.3.1dev ; extra == 'dev'
89
80
  Requires-Dist: pycuda ; extra == 'dev'
90
81
  Requires-Dist: scikit-cuda ; extra == 'dev'
91
82
  Requires-Dist: black ; extra == 'dev'
@@ -93,94 +84,118 @@ Requires-Dist: flake8 ; extra == 'dev'
93
84
  Requires-Dist: timeout-decorator ; extra == 'dev'
94
85
  Requires-Dist: pyopencl ; extra == 'dev'
95
86
  Provides-Extra: dev_no_cuda
96
- Requires-Dist: Sphinx (>=4.0.0) ; extra == 'dev_no_cuda'
97
- Requires-Dist: nbsphinx ; extra == 'dev_no_cuda'
98
- Requires-Dist: pandoc ; extra == 'dev_no_cuda'
99
- Requires-Dist: jupyterlab ; extra == 'dev_no_cuda'
100
87
  Requires-Dist: orange-canvas-core ; extra == 'dev_no_cuda'
101
88
  Requires-Dist: orange-widget-base ; extra == 'dev_no_cuda'
102
- Requires-Dist: ewoks[orange] (>=0.1.1) ; extra == 'dev_no_cuda'
89
+ Requires-Dist: ewoks[orange] >=0.1.1 ; extra == 'dev_no_cuda'
103
90
  Requires-Dist: rsyncmanager ; extra == 'dev_no_cuda'
104
91
  Requires-Dist: graypy ; extra == 'dev_no_cuda'
105
92
  Requires-Dist: fabio ; extra == 'dev_no_cuda'
106
- Requires-Dist: h5py (>=3) ; extra == 'dev_no_cuda'
93
+ Requires-Dist: h5py >=3 ; extra == 'dev_no_cuda'
107
94
  Requires-Dist: lxml ; extra == 'dev_no_cuda'
108
95
  Requires-Dist: werkzeug ; extra == 'dev_no_cuda'
109
96
  Requires-Dist: json-rpc ; extra == 'dev_no_cuda'
110
97
  Requires-Dist: scipy ; extra == 'dev_no_cuda'
111
98
  Requires-Dist: Pillow ; extra == 'dev_no_cuda'
112
99
  Requires-Dist: glymur ; extra == 'dev_no_cuda'
113
- Requires-Dist: pytest ; extra == 'dev_no_cuda'
114
- Requires-Dist: pytest-asyncio ; extra == 'dev_no_cuda'
115
100
  Requires-Dist: resource ; extra == 'dev_no_cuda'
116
101
  Requires-Dist: tifffile ; extra == 'dev_no_cuda'
117
- Requires-Dist: opencv-python ; extra == 'dev_no_cuda'
118
102
  Requires-Dist: hdf5plugin ; extra == 'dev_no_cuda'
119
- Requires-Dist: nabu (>=2023.2.0rc2) ; extra == 'dev_no_cuda'
103
+ Requires-Dist: pyicat-plus ; extra == 'dev_no_cuda'
104
+ Requires-Dist: nabu >=2023.3.1dev ; extra == 'dev_no_cuda'
120
105
  Requires-Dist: black ; extra == 'dev_no_cuda'
121
106
  Requires-Dist: flake8 ; extra == 'dev_no_cuda'
122
107
  Requires-Dist: timeout-decorator ; extra == 'dev_no_cuda'
123
108
  Requires-Dist: pyopencl ; extra == 'dev_no_cuda'
124
109
  Provides-Extra: doc
125
- Requires-Dist: Sphinx (>=4.0.0) ; extra == 'doc'
110
+ Requires-Dist: orange-canvas-core ; extra == 'doc'
111
+ Requires-Dist: orange-widget-base ; extra == 'doc'
112
+ Requires-Dist: ewoks[orange] >=0.1.1 ; extra == 'doc'
113
+ Requires-Dist: rsyncmanager ; extra == 'doc'
114
+ Requires-Dist: graypy ; extra == 'doc'
115
+ Requires-Dist: fabio ; extra == 'doc'
116
+ Requires-Dist: h5py >=3 ; extra == 'doc'
117
+ Requires-Dist: lxml ; extra == 'doc'
118
+ Requires-Dist: werkzeug ; extra == 'doc'
119
+ Requires-Dist: json-rpc ; extra == 'doc'
120
+ Requires-Dist: scipy ; extra == 'doc'
121
+ Requires-Dist: Pillow ; extra == 'doc'
122
+ Requires-Dist: glymur ; extra == 'doc'
123
+ Requires-Dist: resource ; extra == 'doc'
124
+ Requires-Dist: tifffile ; extra == 'doc'
125
+ Requires-Dist: hdf5plugin ; extra == 'doc'
126
+ Requires-Dist: pyicat-plus ; extra == 'doc'
127
+ Requires-Dist: nabu >=2023.3.1dev ; extra == 'doc'
128
+ Requires-Dist: Sphinx >=4.0.0 ; extra == 'doc'
126
129
  Requires-Dist: nbsphinx ; extra == 'doc'
127
130
  Requires-Dist: pandoc ; extra == 'doc'
128
131
  Requires-Dist: jupyterlab ; extra == 'doc'
132
+ Requires-Dist: pydata-sphinx-theme ; extra == 'doc'
133
+ Requires-Dist: sphinx-design ; extra == 'doc'
134
+ Requires-Dist: sphinx-autodoc-typehints ; extra == 'doc'
129
135
  Provides-Extra: full
130
- Requires-Dist: Sphinx (>=4.0.0) ; extra == 'full'
131
- Requires-Dist: nbsphinx ; extra == 'full'
132
- Requires-Dist: pandoc ; extra == 'full'
133
- Requires-Dist: jupyterlab ; extra == 'full'
134
136
  Requires-Dist: orange-canvas-core ; extra == 'full'
135
137
  Requires-Dist: orange-widget-base ; extra == 'full'
136
- Requires-Dist: ewoks[orange] (>=0.1.1) ; extra == 'full'
138
+ Requires-Dist: ewoks[orange] >=0.1.1 ; extra == 'full'
137
139
  Requires-Dist: rsyncmanager ; extra == 'full'
138
140
  Requires-Dist: graypy ; extra == 'full'
139
141
  Requires-Dist: fabio ; extra == 'full'
140
- Requires-Dist: h5py (>=3) ; extra == 'full'
142
+ Requires-Dist: h5py >=3 ; extra == 'full'
141
143
  Requires-Dist: lxml ; extra == 'full'
142
144
  Requires-Dist: werkzeug ; extra == 'full'
143
145
  Requires-Dist: json-rpc ; extra == 'full'
144
146
  Requires-Dist: scipy ; extra == 'full'
145
147
  Requires-Dist: Pillow ; extra == 'full'
146
148
  Requires-Dist: glymur ; extra == 'full'
147
- Requires-Dist: pytest ; extra == 'full'
148
- Requires-Dist: pytest-asyncio ; extra == 'full'
149
149
  Requires-Dist: resource ; extra == 'full'
150
150
  Requires-Dist: tifffile ; extra == 'full'
151
- Requires-Dist: opencv-python ; extra == 'full'
152
151
  Requires-Dist: hdf5plugin ; extra == 'full'
153
- Requires-Dist: nabu[full] (>=2023.2.0rc2) ; extra == 'full'
152
+ Requires-Dist: pyicat-plus ; extra == 'full'
153
+ Requires-Dist: nabu[full] >=2023.3.1dev ; extra == 'full'
154
154
  Requires-Dist: pycuda ; extra == 'full'
155
155
  Requires-Dist: scikit-cuda ; extra == 'full'
156
156
  Provides-Extra: full_no_cuda
157
- Requires-Dist: Sphinx (>=4.0.0) ; extra == 'full_no_cuda'
158
- Requires-Dist: nbsphinx ; extra == 'full_no_cuda'
159
- Requires-Dist: pandoc ; extra == 'full_no_cuda'
160
- Requires-Dist: jupyterlab ; extra == 'full_no_cuda'
161
157
  Requires-Dist: orange-canvas-core ; extra == 'full_no_cuda'
162
158
  Requires-Dist: orange-widget-base ; extra == 'full_no_cuda'
163
- Requires-Dist: ewoks[orange] (>=0.1.1) ; extra == 'full_no_cuda'
159
+ Requires-Dist: ewoks[orange] >=0.1.1 ; extra == 'full_no_cuda'
164
160
  Requires-Dist: rsyncmanager ; extra == 'full_no_cuda'
165
161
  Requires-Dist: graypy ; extra == 'full_no_cuda'
166
162
  Requires-Dist: fabio ; extra == 'full_no_cuda'
167
- Requires-Dist: h5py (>=3) ; extra == 'full_no_cuda'
163
+ Requires-Dist: h5py >=3 ; extra == 'full_no_cuda'
168
164
  Requires-Dist: lxml ; extra == 'full_no_cuda'
169
165
  Requires-Dist: werkzeug ; extra == 'full_no_cuda'
170
166
  Requires-Dist: json-rpc ; extra == 'full_no_cuda'
171
167
  Requires-Dist: scipy ; extra == 'full_no_cuda'
172
168
  Requires-Dist: Pillow ; extra == 'full_no_cuda'
173
169
  Requires-Dist: glymur ; extra == 'full_no_cuda'
174
- Requires-Dist: pytest ; extra == 'full_no_cuda'
175
- Requires-Dist: pytest-asyncio ; extra == 'full_no_cuda'
176
170
  Requires-Dist: resource ; extra == 'full_no_cuda'
177
171
  Requires-Dist: tifffile ; extra == 'full_no_cuda'
178
- Requires-Dist: opencv-python ; extra == 'full_no_cuda'
179
172
  Requires-Dist: hdf5plugin ; extra == 'full_no_cuda'
180
- Requires-Dist: nabu (>=2023.2.0rc2) ; extra == 'full_no_cuda'
173
+ Requires-Dist: pyicat-plus ; extra == 'full_no_cuda'
174
+ Requires-Dist: nabu >=2023.3.1dev ; extra == 'full_no_cuda'
175
+ Provides-Extra: full_no_nabu
176
+ Requires-Dist: orange-canvas-core ; extra == 'full_no_nabu'
177
+ Requires-Dist: orange-widget-base ; extra == 'full_no_nabu'
178
+ Requires-Dist: ewoks[orange] >=0.1.1 ; extra == 'full_no_nabu'
179
+ Requires-Dist: rsyncmanager ; extra == 'full_no_nabu'
180
+ Requires-Dist: graypy ; extra == 'full_no_nabu'
181
+ Requires-Dist: fabio ; extra == 'full_no_nabu'
182
+ Requires-Dist: h5py >=3 ; extra == 'full_no_nabu'
183
+ Requires-Dist: lxml ; extra == 'full_no_nabu'
184
+ Requires-Dist: werkzeug ; extra == 'full_no_nabu'
185
+ Requires-Dist: json-rpc ; extra == 'full_no_nabu'
186
+ Requires-Dist: scipy ; extra == 'full_no_nabu'
187
+ Requires-Dist: Pillow ; extra == 'full_no_nabu'
188
+ Requires-Dist: glymur ; extra == 'full_no_nabu'
189
+ Requires-Dist: resource ; extra == 'full_no_nabu'
190
+ Requires-Dist: tifffile ; extra == 'full_no_nabu'
191
+ Requires-Dist: hdf5plugin ; extra == 'full_no_nabu'
192
+ Requires-Dist: pyicat-plus ; extra == 'full_no_nabu'
181
193
  Provides-Extra: setup_requires
182
194
  Requires-Dist: setuptools ; extra == 'setup_requires'
183
- Requires-Dist: numpy (>=1.12) ; extra == 'setup_requires'
195
+ Requires-Dist: numpy >=1.12 ; extra == 'setup_requires'
196
+ Provides-Extra: test
197
+ Requires-Dist: pytest-asyncio ; extra == 'test'
198
+ Requires-Dist: tomoscan[test] >=2.0.2rc17 ; extra == 'test'
184
199
 
185
200
  tomwer
186
201
  ======