tnfr 4.5.2__py3-none-any.whl → 8.5.0__py3-none-any.whl

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Files changed (365) hide show
  1. tnfr/__init__.py +334 -50
  2. tnfr/__init__.pyi +33 -0
  3. tnfr/_compat.py +10 -0
  4. tnfr/_generated_version.py +34 -0
  5. tnfr/_version.py +49 -0
  6. tnfr/_version.pyi +7 -0
  7. tnfr/alias.py +214 -37
  8. tnfr/alias.pyi +108 -0
  9. tnfr/backends/__init__.py +354 -0
  10. tnfr/backends/jax_backend.py +173 -0
  11. tnfr/backends/numpy_backend.py +238 -0
  12. tnfr/backends/optimized_numpy.py +420 -0
  13. tnfr/backends/torch_backend.py +408 -0
  14. tnfr/cache.py +149 -556
  15. tnfr/cache.pyi +13 -0
  16. tnfr/cli/__init__.py +51 -16
  17. tnfr/cli/__init__.pyi +26 -0
  18. tnfr/cli/arguments.py +344 -32
  19. tnfr/cli/arguments.pyi +29 -0
  20. tnfr/cli/execution.py +676 -50
  21. tnfr/cli/execution.pyi +70 -0
  22. tnfr/cli/interactive_validator.py +614 -0
  23. tnfr/cli/utils.py +18 -3
  24. tnfr/cli/utils.pyi +7 -0
  25. tnfr/cli/validate.py +236 -0
  26. tnfr/compat/__init__.py +85 -0
  27. tnfr/compat/dataclass.py +136 -0
  28. tnfr/compat/jsonschema_stub.py +61 -0
  29. tnfr/compat/matplotlib_stub.py +73 -0
  30. tnfr/compat/numpy_stub.py +155 -0
  31. tnfr/config/__init__.py +224 -0
  32. tnfr/config/__init__.pyi +10 -0
  33. tnfr/{constants_glyphs.py → config/constants.py} +26 -20
  34. tnfr/config/constants.pyi +12 -0
  35. tnfr/config/defaults.py +54 -0
  36. tnfr/{constants/core.py → config/defaults_core.py} +59 -6
  37. tnfr/config/defaults_init.py +33 -0
  38. tnfr/config/defaults_metric.py +104 -0
  39. tnfr/config/feature_flags.py +81 -0
  40. tnfr/config/feature_flags.pyi +16 -0
  41. tnfr/config/glyph_constants.py +31 -0
  42. tnfr/config/init.py +77 -0
  43. tnfr/config/init.pyi +8 -0
  44. tnfr/config/operator_names.py +254 -0
  45. tnfr/config/operator_names.pyi +36 -0
  46. tnfr/config/physics_derivation.py +354 -0
  47. tnfr/config/presets.py +83 -0
  48. tnfr/config/presets.pyi +7 -0
  49. tnfr/config/security.py +927 -0
  50. tnfr/config/thresholds.py +114 -0
  51. tnfr/config/tnfr_config.py +498 -0
  52. tnfr/constants/__init__.py +51 -133
  53. tnfr/constants/__init__.pyi +92 -0
  54. tnfr/constants/aliases.py +33 -0
  55. tnfr/constants/aliases.pyi +27 -0
  56. tnfr/constants/init.py +3 -1
  57. tnfr/constants/init.pyi +12 -0
  58. tnfr/constants/metric.py +9 -15
  59. tnfr/constants/metric.pyi +19 -0
  60. tnfr/core/__init__.py +33 -0
  61. tnfr/core/container.py +226 -0
  62. tnfr/core/default_implementations.py +329 -0
  63. tnfr/core/interfaces.py +279 -0
  64. tnfr/dynamics/__init__.py +213 -633
  65. tnfr/dynamics/__init__.pyi +83 -0
  66. tnfr/dynamics/adaptation.py +267 -0
  67. tnfr/dynamics/adaptation.pyi +7 -0
  68. tnfr/dynamics/adaptive_sequences.py +189 -0
  69. tnfr/dynamics/adaptive_sequences.pyi +14 -0
  70. tnfr/dynamics/aliases.py +23 -0
  71. tnfr/dynamics/aliases.pyi +19 -0
  72. tnfr/dynamics/bifurcation.py +232 -0
  73. tnfr/dynamics/canonical.py +229 -0
  74. tnfr/dynamics/canonical.pyi +48 -0
  75. tnfr/dynamics/coordination.py +385 -0
  76. tnfr/dynamics/coordination.pyi +25 -0
  77. tnfr/dynamics/dnfr.py +2699 -398
  78. tnfr/dynamics/dnfr.pyi +26 -0
  79. tnfr/dynamics/dynamic_limits.py +225 -0
  80. tnfr/dynamics/feedback.py +252 -0
  81. tnfr/dynamics/feedback.pyi +24 -0
  82. tnfr/dynamics/fused_dnfr.py +454 -0
  83. tnfr/dynamics/homeostasis.py +157 -0
  84. tnfr/dynamics/homeostasis.pyi +14 -0
  85. tnfr/dynamics/integrators.py +496 -102
  86. tnfr/dynamics/integrators.pyi +36 -0
  87. tnfr/dynamics/learning.py +310 -0
  88. tnfr/dynamics/learning.pyi +33 -0
  89. tnfr/dynamics/metabolism.py +254 -0
  90. tnfr/dynamics/nbody.py +796 -0
  91. tnfr/dynamics/nbody_tnfr.py +783 -0
  92. tnfr/dynamics/propagation.py +326 -0
  93. tnfr/dynamics/runtime.py +908 -0
  94. tnfr/dynamics/runtime.pyi +77 -0
  95. tnfr/dynamics/sampling.py +10 -5
  96. tnfr/dynamics/sampling.pyi +7 -0
  97. tnfr/dynamics/selectors.py +711 -0
  98. tnfr/dynamics/selectors.pyi +85 -0
  99. tnfr/dynamics/structural_clip.py +207 -0
  100. tnfr/errors/__init__.py +37 -0
  101. tnfr/errors/contextual.py +492 -0
  102. tnfr/execution.py +77 -55
  103. tnfr/execution.pyi +45 -0
  104. tnfr/extensions/__init__.py +205 -0
  105. tnfr/extensions/__init__.pyi +18 -0
  106. tnfr/extensions/base.py +173 -0
  107. tnfr/extensions/base.pyi +35 -0
  108. tnfr/extensions/business/__init__.py +71 -0
  109. tnfr/extensions/business/__init__.pyi +11 -0
  110. tnfr/extensions/business/cookbook.py +88 -0
  111. tnfr/extensions/business/cookbook.pyi +8 -0
  112. tnfr/extensions/business/health_analyzers.py +202 -0
  113. tnfr/extensions/business/health_analyzers.pyi +9 -0
  114. tnfr/extensions/business/patterns.py +183 -0
  115. tnfr/extensions/business/patterns.pyi +8 -0
  116. tnfr/extensions/medical/__init__.py +73 -0
  117. tnfr/extensions/medical/__init__.pyi +11 -0
  118. tnfr/extensions/medical/cookbook.py +88 -0
  119. tnfr/extensions/medical/cookbook.pyi +8 -0
  120. tnfr/extensions/medical/health_analyzers.py +181 -0
  121. tnfr/extensions/medical/health_analyzers.pyi +9 -0
  122. tnfr/extensions/medical/patterns.py +163 -0
  123. tnfr/extensions/medical/patterns.pyi +8 -0
  124. tnfr/flatten.py +29 -50
  125. tnfr/flatten.pyi +21 -0
  126. tnfr/gamma.py +66 -53
  127. tnfr/gamma.pyi +36 -0
  128. tnfr/glyph_history.py +144 -57
  129. tnfr/glyph_history.pyi +35 -0
  130. tnfr/glyph_runtime.py +19 -0
  131. tnfr/glyph_runtime.pyi +8 -0
  132. tnfr/immutable.py +70 -30
  133. tnfr/immutable.pyi +36 -0
  134. tnfr/initialization.py +22 -16
  135. tnfr/initialization.pyi +65 -0
  136. tnfr/io.py +5 -241
  137. tnfr/io.pyi +13 -0
  138. tnfr/locking.pyi +7 -0
  139. tnfr/mathematics/__init__.py +79 -0
  140. tnfr/mathematics/backend.py +453 -0
  141. tnfr/mathematics/backend.pyi +99 -0
  142. tnfr/mathematics/dynamics.py +408 -0
  143. tnfr/mathematics/dynamics.pyi +90 -0
  144. tnfr/mathematics/epi.py +391 -0
  145. tnfr/mathematics/epi.pyi +65 -0
  146. tnfr/mathematics/generators.py +242 -0
  147. tnfr/mathematics/generators.pyi +29 -0
  148. tnfr/mathematics/metrics.py +119 -0
  149. tnfr/mathematics/metrics.pyi +16 -0
  150. tnfr/mathematics/operators.py +239 -0
  151. tnfr/mathematics/operators.pyi +59 -0
  152. tnfr/mathematics/operators_factory.py +124 -0
  153. tnfr/mathematics/operators_factory.pyi +11 -0
  154. tnfr/mathematics/projection.py +87 -0
  155. tnfr/mathematics/projection.pyi +33 -0
  156. tnfr/mathematics/runtime.py +182 -0
  157. tnfr/mathematics/runtime.pyi +64 -0
  158. tnfr/mathematics/spaces.py +256 -0
  159. tnfr/mathematics/spaces.pyi +83 -0
  160. tnfr/mathematics/transforms.py +305 -0
  161. tnfr/mathematics/transforms.pyi +62 -0
  162. tnfr/metrics/__init__.py +47 -9
  163. tnfr/metrics/__init__.pyi +20 -0
  164. tnfr/metrics/buffer_cache.py +163 -0
  165. tnfr/metrics/buffer_cache.pyi +24 -0
  166. tnfr/metrics/cache_utils.py +214 -0
  167. tnfr/metrics/coherence.py +1510 -330
  168. tnfr/metrics/coherence.pyi +129 -0
  169. tnfr/metrics/common.py +23 -16
  170. tnfr/metrics/common.pyi +35 -0
  171. tnfr/metrics/core.py +251 -36
  172. tnfr/metrics/core.pyi +13 -0
  173. tnfr/metrics/diagnosis.py +709 -110
  174. tnfr/metrics/diagnosis.pyi +86 -0
  175. tnfr/metrics/emergence.py +245 -0
  176. tnfr/metrics/export.py +60 -18
  177. tnfr/metrics/export.pyi +7 -0
  178. tnfr/metrics/glyph_timing.py +233 -43
  179. tnfr/metrics/glyph_timing.pyi +81 -0
  180. tnfr/metrics/learning_metrics.py +280 -0
  181. tnfr/metrics/learning_metrics.pyi +21 -0
  182. tnfr/metrics/phase_coherence.py +351 -0
  183. tnfr/metrics/phase_compatibility.py +349 -0
  184. tnfr/metrics/reporting.py +63 -28
  185. tnfr/metrics/reporting.pyi +25 -0
  186. tnfr/metrics/sense_index.py +1126 -43
  187. tnfr/metrics/sense_index.pyi +9 -0
  188. tnfr/metrics/trig.py +215 -23
  189. tnfr/metrics/trig.pyi +13 -0
  190. tnfr/metrics/trig_cache.py +148 -24
  191. tnfr/metrics/trig_cache.pyi +10 -0
  192. tnfr/multiscale/__init__.py +32 -0
  193. tnfr/multiscale/hierarchical.py +517 -0
  194. tnfr/node.py +646 -140
  195. tnfr/node.pyi +139 -0
  196. tnfr/observers.py +160 -45
  197. tnfr/observers.pyi +31 -0
  198. tnfr/ontosim.py +23 -19
  199. tnfr/ontosim.pyi +28 -0
  200. tnfr/operators/__init__.py +1358 -106
  201. tnfr/operators/__init__.pyi +31 -0
  202. tnfr/operators/algebra.py +277 -0
  203. tnfr/operators/canonical_patterns.py +420 -0
  204. tnfr/operators/cascade.py +267 -0
  205. tnfr/operators/cycle_detection.py +358 -0
  206. tnfr/operators/definitions.py +4108 -0
  207. tnfr/operators/definitions.pyi +78 -0
  208. tnfr/operators/grammar.py +1164 -0
  209. tnfr/operators/grammar.pyi +140 -0
  210. tnfr/operators/hamiltonian.py +710 -0
  211. tnfr/operators/health_analyzer.py +809 -0
  212. tnfr/operators/jitter.py +107 -38
  213. tnfr/operators/jitter.pyi +11 -0
  214. tnfr/operators/lifecycle.py +314 -0
  215. tnfr/operators/metabolism.py +618 -0
  216. tnfr/operators/metrics.py +2138 -0
  217. tnfr/operators/network_analysis/__init__.py +27 -0
  218. tnfr/operators/network_analysis/source_detection.py +186 -0
  219. tnfr/operators/nodal_equation.py +395 -0
  220. tnfr/operators/pattern_detection.py +660 -0
  221. tnfr/operators/patterns.py +669 -0
  222. tnfr/operators/postconditions/__init__.py +38 -0
  223. tnfr/operators/postconditions/mutation.py +236 -0
  224. tnfr/operators/preconditions/__init__.py +1226 -0
  225. tnfr/operators/preconditions/coherence.py +305 -0
  226. tnfr/operators/preconditions/dissonance.py +236 -0
  227. tnfr/operators/preconditions/emission.py +128 -0
  228. tnfr/operators/preconditions/mutation.py +580 -0
  229. tnfr/operators/preconditions/reception.py +125 -0
  230. tnfr/operators/preconditions/resonance.py +364 -0
  231. tnfr/operators/registry.py +74 -0
  232. tnfr/operators/registry.pyi +9 -0
  233. tnfr/operators/remesh.py +1415 -91
  234. tnfr/operators/remesh.pyi +26 -0
  235. tnfr/operators/structural_units.py +268 -0
  236. tnfr/operators/unified_grammar.py +105 -0
  237. tnfr/parallel/__init__.py +54 -0
  238. tnfr/parallel/auto_scaler.py +234 -0
  239. tnfr/parallel/distributed.py +384 -0
  240. tnfr/parallel/engine.py +238 -0
  241. tnfr/parallel/gpu_engine.py +420 -0
  242. tnfr/parallel/monitoring.py +248 -0
  243. tnfr/parallel/partitioner.py +459 -0
  244. tnfr/py.typed +0 -0
  245. tnfr/recipes/__init__.py +22 -0
  246. tnfr/recipes/cookbook.py +743 -0
  247. tnfr/rng.py +75 -151
  248. tnfr/rng.pyi +26 -0
  249. tnfr/schemas/__init__.py +8 -0
  250. tnfr/schemas/grammar.json +94 -0
  251. tnfr/sdk/__init__.py +107 -0
  252. tnfr/sdk/__init__.pyi +19 -0
  253. tnfr/sdk/adaptive_system.py +173 -0
  254. tnfr/sdk/adaptive_system.pyi +21 -0
  255. tnfr/sdk/builders.py +370 -0
  256. tnfr/sdk/builders.pyi +51 -0
  257. tnfr/sdk/fluent.py +1121 -0
  258. tnfr/sdk/fluent.pyi +74 -0
  259. tnfr/sdk/templates.py +342 -0
  260. tnfr/sdk/templates.pyi +41 -0
  261. tnfr/sdk/utils.py +341 -0
  262. tnfr/secure_config.py +46 -0
  263. tnfr/security/__init__.py +70 -0
  264. tnfr/security/database.py +514 -0
  265. tnfr/security/subprocess.py +503 -0
  266. tnfr/security/validation.py +290 -0
  267. tnfr/selector.py +59 -22
  268. tnfr/selector.pyi +19 -0
  269. tnfr/sense.py +92 -67
  270. tnfr/sense.pyi +23 -0
  271. tnfr/services/__init__.py +17 -0
  272. tnfr/services/orchestrator.py +325 -0
  273. tnfr/sparse/__init__.py +39 -0
  274. tnfr/sparse/representations.py +492 -0
  275. tnfr/structural.py +639 -263
  276. tnfr/structural.pyi +83 -0
  277. tnfr/telemetry/__init__.py +35 -0
  278. tnfr/telemetry/cache_metrics.py +226 -0
  279. tnfr/telemetry/cache_metrics.pyi +64 -0
  280. tnfr/telemetry/nu_f.py +422 -0
  281. tnfr/telemetry/nu_f.pyi +108 -0
  282. tnfr/telemetry/verbosity.py +36 -0
  283. tnfr/telemetry/verbosity.pyi +15 -0
  284. tnfr/tokens.py +2 -4
  285. tnfr/tokens.pyi +36 -0
  286. tnfr/tools/__init__.py +20 -0
  287. tnfr/tools/domain_templates.py +478 -0
  288. tnfr/tools/sequence_generator.py +846 -0
  289. tnfr/topology/__init__.py +13 -0
  290. tnfr/topology/asymmetry.py +151 -0
  291. tnfr/trace.py +300 -126
  292. tnfr/trace.pyi +42 -0
  293. tnfr/tutorials/__init__.py +38 -0
  294. tnfr/tutorials/autonomous_evolution.py +285 -0
  295. tnfr/tutorials/interactive.py +1576 -0
  296. tnfr/tutorials/structural_metabolism.py +238 -0
  297. tnfr/types.py +743 -12
  298. tnfr/types.pyi +357 -0
  299. tnfr/units.py +68 -0
  300. tnfr/units.pyi +13 -0
  301. tnfr/utils/__init__.py +282 -0
  302. tnfr/utils/__init__.pyi +215 -0
  303. tnfr/utils/cache.py +4223 -0
  304. tnfr/utils/cache.pyi +470 -0
  305. tnfr/{callback_utils.py → utils/callbacks.py} +26 -39
  306. tnfr/utils/callbacks.pyi +49 -0
  307. tnfr/utils/chunks.py +108 -0
  308. tnfr/utils/chunks.pyi +22 -0
  309. tnfr/utils/data.py +428 -0
  310. tnfr/utils/data.pyi +74 -0
  311. tnfr/utils/graph.py +85 -0
  312. tnfr/utils/graph.pyi +10 -0
  313. tnfr/utils/init.py +821 -0
  314. tnfr/utils/init.pyi +80 -0
  315. tnfr/utils/io.py +559 -0
  316. tnfr/utils/io.pyi +66 -0
  317. tnfr/{helpers → utils}/numeric.py +51 -24
  318. tnfr/utils/numeric.pyi +21 -0
  319. tnfr/validation/__init__.py +257 -0
  320. tnfr/validation/__init__.pyi +85 -0
  321. tnfr/validation/compatibility.py +460 -0
  322. tnfr/validation/compatibility.pyi +6 -0
  323. tnfr/validation/config.py +73 -0
  324. tnfr/validation/graph.py +139 -0
  325. tnfr/validation/graph.pyi +18 -0
  326. tnfr/validation/input_validation.py +755 -0
  327. tnfr/validation/invariants.py +712 -0
  328. tnfr/validation/rules.py +253 -0
  329. tnfr/validation/rules.pyi +44 -0
  330. tnfr/validation/runtime.py +279 -0
  331. tnfr/validation/runtime.pyi +28 -0
  332. tnfr/validation/sequence_validator.py +162 -0
  333. tnfr/validation/soft_filters.py +170 -0
  334. tnfr/validation/soft_filters.pyi +32 -0
  335. tnfr/validation/spectral.py +164 -0
  336. tnfr/validation/spectral.pyi +42 -0
  337. tnfr/validation/validator.py +1266 -0
  338. tnfr/validation/window.py +39 -0
  339. tnfr/validation/window.pyi +1 -0
  340. tnfr/visualization/__init__.py +98 -0
  341. tnfr/visualization/cascade_viz.py +256 -0
  342. tnfr/visualization/hierarchy.py +284 -0
  343. tnfr/visualization/sequence_plotter.py +784 -0
  344. tnfr/viz/__init__.py +60 -0
  345. tnfr/viz/matplotlib.py +278 -0
  346. tnfr/viz/matplotlib.pyi +35 -0
  347. tnfr-8.5.0.dist-info/METADATA +573 -0
  348. tnfr-8.5.0.dist-info/RECORD +353 -0
  349. {tnfr-4.5.2.dist-info → tnfr-8.5.0.dist-info}/entry_points.txt +1 -0
  350. {tnfr-4.5.2.dist-info → tnfr-8.5.0.dist-info}/licenses/LICENSE.md +1 -1
  351. tnfr/collections_utils.py +0 -300
  352. tnfr/config.py +0 -32
  353. tnfr/grammar.py +0 -344
  354. tnfr/graph_utils.py +0 -84
  355. tnfr/helpers/__init__.py +0 -71
  356. tnfr/import_utils.py +0 -228
  357. tnfr/json_utils.py +0 -162
  358. tnfr/logging_utils.py +0 -116
  359. tnfr/presets.py +0 -60
  360. tnfr/validators.py +0 -84
  361. tnfr/value_utils.py +0 -59
  362. tnfr-4.5.2.dist-info/METADATA +0 -379
  363. tnfr-4.5.2.dist-info/RECORD +0 -67
  364. {tnfr-4.5.2.dist-info → tnfr-8.5.0.dist-info}/WHEEL +0 -0
  365. {tnfr-4.5.2.dist-info → tnfr-8.5.0.dist-info}/top_level.txt +0 -0
@@ -0,0 +1,38 @@
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+ """Postcondition validators for TNFR structural operators.
2
+
3
+ Each operator has specific guarantees that must be verified after execution
4
+ to ensure TNFR structural invariants are maintained. This package provides
5
+ postcondition validators for operators that need strict verification.
6
+
7
+ Postconditions ensure that operators fulfill their contracts and maintain
8
+ canonical TNFR physics.
9
+ """
10
+
11
+ from __future__ import annotations
12
+
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+ from typing import TYPE_CHECKING
14
+
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+ if TYPE_CHECKING:
16
+ from ...types import NodeId, TNFRGraph
17
+
18
+ __all__ = [
19
+ "OperatorContractViolation",
20
+ ]
21
+
22
+
23
+ class OperatorContractViolation(Exception):
24
+ """Raised when an operator's postconditions are violated."""
25
+
26
+ def __init__(self, operator: str, reason: str) -> None:
27
+ """Initialize contract violation error.
28
+
29
+ Parameters
30
+ ----------
31
+ operator : str
32
+ Name of the operator that violated its contract
33
+ reason : str
34
+ Description of why the contract was violated
35
+ """
36
+ self.operator = operator
37
+ self.reason = reason
38
+ super().__init__(f"{operator} contract violation: {reason}")
@@ -0,0 +1,236 @@
1
+ """Postcondition validators for ZHIR (Mutation) operator.
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+
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+ Implements verification of mutation postconditions including phase transformation,
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+ identity preservation, and bifurcation handling.
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+
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+ These postconditions ensure that ZHIR fulfills its contract and maintains TNFR
7
+ structural invariants.
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+ """
9
+
10
+ from __future__ import annotations
11
+
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+ from typing import TYPE_CHECKING
13
+
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+ if TYPE_CHECKING:
15
+ from ...types import NodeId, TNFRGraph
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+
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+ from ...alias import get_attr
18
+ from ...constants.aliases import ALIAS_THETA
19
+ from . import OperatorContractViolation
20
+
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+ __all__ = [
22
+ "verify_phase_transformed",
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+ "verify_identity_preserved",
24
+ "verify_bifurcation_handled",
25
+ ]
26
+
27
+
28
+ def verify_phase_transformed(
29
+ G: TNFRGraph, node: NodeId, theta_before: float
30
+ ) -> None:
31
+ """Verify that phase was actually transformed by ZHIR.
32
+
33
+ ZHIR's primary contract is phase transformation (θ → θ'). This verifies
34
+ that the phase actually changed, fulfilling the operator's purpose.
35
+
36
+ Parameters
37
+ ----------
38
+ G : TNFRGraph
39
+ Graph containing the node
40
+ node : NodeId
41
+ Node to verify
42
+ theta_before : float
43
+ Phase value before ZHIR application
44
+
45
+ Raises
46
+ ------
47
+ OperatorContractViolation
48
+ If phase was not transformed (theta unchanged)
49
+
50
+ Notes
51
+ -----
52
+ A small tolerance (1e-6) is used to account for floating-point precision.
53
+ If theta changes by less than this tolerance, it's considered unchanged.
54
+
55
+ This check ensures that ZHIR actually performs its structural transformation
56
+ rather than being a no-op.
57
+
58
+ Examples
59
+ --------
60
+ >>> from tnfr.structural import create_nfr
61
+ >>> from tnfr.operators import Mutation
62
+ >>> G, node = create_nfr("test", epi=0.5, vf=1.0, theta=0.0)
63
+ >>> theta_before = G.nodes[node]["theta"]
64
+ >>> Mutation()(G, node)
65
+ >>> verify_phase_transformed(G, node, theta_before) # Should pass
66
+ """
67
+ theta_after = float(get_attr(G.nodes[node], ALIAS_THETA, 0.0))
68
+
69
+ # Check if phase actually changed (with small tolerance for floating-point)
70
+ if abs(theta_after - theta_before) < 1e-6:
71
+ raise OperatorContractViolation(
72
+ "Mutation",
73
+ f"Phase was not transformed (θ before={theta_before:.6f}, "
74
+ f"θ after={theta_after:.6f}, diff={abs(theta_after - theta_before):.9f}). "
75
+ f"ZHIR must transform phase to fulfill its contract."
76
+ )
77
+
78
+
79
+ def verify_identity_preserved(
80
+ G: TNFRGraph, node: NodeId, epi_kind_before: str | None
81
+ ) -> None:
82
+ """Verify that structural identity (epi_kind) was preserved through mutation.
83
+
84
+ ZHIR transforms phase/regime while preserving structural identity. A cell
85
+ remains a cell, a concept remains a concept - only the operational mode changes.
86
+ This is a fundamental TNFR invariant: transformations preserve coherence.
87
+
88
+ Parameters
89
+ ----------
90
+ G : TNFRGraph
91
+ Graph containing the node
92
+ node : NodeId
93
+ Node to verify
94
+ epi_kind_before : str or None
95
+ Identity (epi_kind) before ZHIR application
96
+
97
+ Raises
98
+ ------
99
+ OperatorContractViolation
100
+ If identity changed during mutation
101
+
102
+ Notes
103
+ -----
104
+ If epi_kind_before is None (identity not tracked), this check is skipped.
105
+ This allows flexibility for simple nodes while enforcing identity preservation
106
+ when it's explicitly tracked.
107
+
108
+ **Special Case**: If epi_kind is used to track operator glyphs (common pattern),
109
+ the check is skipped since this is operational metadata, not structural identity.
110
+ To enable strict identity checking, use a separate attribute (e.g., "structural_type"
111
+ or "node_type") for identity tracking.
112
+
113
+ Identity preservation is distinct from EPI preservation - EPI may change
114
+ slightly during mutation (structural adjustments), but the fundamental type
115
+ (epi_kind) must remain constant.
116
+
117
+ Examples
118
+ --------
119
+ >>> from tnfr.structural import create_nfr
120
+ >>> from tnfr.operators import Mutation
121
+ >>> G, node = create_nfr("test", epi=0.5, vf=1.0)
122
+ >>> G.nodes[node]["structural_type"] = "stem_cell" # Use separate attribute
123
+ >>> epi_kind_before = G.nodes[node]["structural_type"]
124
+ >>> Mutation()(G, node)
125
+ >>> # After mutation, structural_type should still be "stem_cell"
126
+ >>> # verify_identity_preserved(G, node, epi_kind_before) # Would check structural_type
127
+ """
128
+ # Skip check if identity was not tracked
129
+ if epi_kind_before is None:
130
+ return
131
+
132
+ epi_kind_after = G.nodes[node].get("epi_kind")
133
+
134
+ # Skip if epi_kind appears to be tracking operator glyphs (common pattern)
135
+ # Operator glyphs are short codes like "IL", "OZ", "ZHIR"
136
+ if epi_kind_after in ["IL", "EN", "AL", "OZ", "RA", "UM", "SHA", "VAL", "NUL", "THOL", "ZHIR", "NAV", "REMESH"]:
137
+ # epi_kind is being used for operator tracking, not identity
138
+ # This is acceptable operational metadata, skip identity check
139
+ return
140
+
141
+ if epi_kind_after != epi_kind_before:
142
+ raise OperatorContractViolation(
143
+ "Mutation",
144
+ f"Structural identity changed during mutation: "
145
+ f"{epi_kind_before} → {epi_kind_after}. "
146
+ f"ZHIR must preserve epi_kind while transforming phase."
147
+ )
148
+
149
+
150
+ def verify_bifurcation_handled(G: TNFRGraph, node: NodeId) -> None:
151
+ """Verify that bifurcation was handled if triggered during mutation.
152
+
153
+ When ZHIR detects bifurcation potential (∂²EPI/∂t² > τ), it must either:
154
+ 1. Create a variant node (if bifurcation mode = "variant_creation")
155
+ 2. Set detection flag (if bifurcation mode = "detection")
156
+
157
+ This ensures that bifurcation events are properly tracked and controlled,
158
+ preventing uncontrolled structural fragmentation.
159
+
160
+ Parameters
161
+ ----------
162
+ G : TNFRGraph
163
+ Graph containing the node
164
+ node : NodeId
165
+ Node to verify
166
+
167
+ Raises
168
+ ------
169
+ OperatorContractViolation
170
+ If bifurcation was triggered but not handled according to configured mode
171
+
172
+ Notes
173
+ -----
174
+ **Bifurcation Modes**:
175
+
176
+ - "detection" (default): Only flag bifurcation potential, no variant creation
177
+ - "variant_creation": Create new node as bifurcation variant
178
+
179
+ In "variant_creation" mode, the function verifies that a bifurcation event
180
+ was recorded in G.graph["zhir_bifurcation_events"].
181
+
182
+ Grammar rule U4a requires bifurcation handlers (THOL or IL) after ZHIR
183
+ when bifurcation is detected.
184
+
185
+ Examples
186
+ --------
187
+ >>> from tnfr.structural import create_nfr
188
+ >>> from tnfr.operators import Mutation
189
+ >>> G, node = create_nfr("test", epi=0.5, vf=1.0)
190
+ >>> G.graph["ZHIR_BIFURCATION_MODE"] = "detection"
191
+ >>> Mutation()(G, node)
192
+ >>> # If bifurcation detected, flag should be set
193
+ >>> verify_bifurcation_handled(G, node) # Should pass
194
+ """
195
+ # Check if bifurcation was detected
196
+ bifurcation_potential = G.nodes[node].get("_zhir_bifurcation_potential", False)
197
+
198
+ if not bifurcation_potential:
199
+ # No bifurcation detected, nothing to verify
200
+ return
201
+
202
+ # Bifurcation was detected - verify it was handled
203
+ mode = G.graph.get("ZHIR_BIFURCATION_MODE", "detection")
204
+
205
+ if mode == "variant_creation":
206
+ # In variant creation mode, verify variant was actually created
207
+ events = G.graph.get("zhir_bifurcation_events", [])
208
+
209
+ # Check if this node has a recorded bifurcation event
210
+ node_has_event = any(
211
+ event.get("parent_node") == node
212
+ for event in events
213
+ )
214
+
215
+ if not node_has_event:
216
+ raise OperatorContractViolation(
217
+ "Mutation",
218
+ f"Bifurcation potential detected (∂²EPI/∂t² > τ) but variant "
219
+ f"was not created. Mode={mode} requires variant creation. "
220
+ f"Check _spawn_mutation_variant() implementation."
221
+ )
222
+
223
+ elif mode == "detection":
224
+ # In detection mode, just verify the flag is set (already checked above)
225
+ # No variant creation required, flag is sufficient
226
+ pass
227
+
228
+ else:
229
+ # Unknown mode - log warning but don't raise error
230
+ import warnings
231
+ warnings.warn(
232
+ f"Unknown ZHIR_BIFURCATION_MODE: {mode}. "
233
+ f"Expected 'detection' or 'variant_creation'. "
234
+ f"Bifurcation handling could not be fully verified.",
235
+ stacklevel=2,
236
+ )