snappy 3.1__cp38-cp38-win_amd64.whl → 3.2__cp38-cp38-win_amd64.whl
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- snappy/CyOpenGL.cp38-win_amd64.pyd +0 -0
- snappy/SnapPy.cp38-win_amd64.pyd +0 -0
- snappy/SnapPyHP.cp38-win_amd64.pyd +0 -0
- snappy/__init__.py +299 -402
- snappy/app.py +70 -20
- snappy/browser.py +18 -17
- snappy/canonical.py +249 -0
- snappy/{verify/cusp_shapes.py → cusps/__init__.py} +8 -18
- snappy/cusps/cusp_area_matrix.py +101 -0
- snappy/{verify/cusp_areas.py → cusps/cusp_areas_from_matrix.py} +23 -39
- snappy/cusps/maximal_cusp_area_matrix.py +136 -0
- snappy/cusps/test.py +21 -0
- snappy/cusps/trig_cusp_area_matrix.py +63 -0
- snappy/database.py +10 -9
- snappy/decorated_isosig.py +337 -114
- snappy/dev/extended_ptolemy/complexVolumesClosed.py +40 -7
- snappy/dev/extended_ptolemy/extended.py +3 -3
- snappy/dev/extended_ptolemy/phc_wrapper.py +10 -10
- snappy/dev/vericlosed/oneVertexTruncatedComplex.py +1 -1
- snappy/doc/_images/m004_paper_plane_on_systole.jpg +0 -0
- snappy/doc/_images/m125_paper_plane.jpg +0 -0
- snappy/doc/_images/o9_00000_systole_paper_plane.jpg +0 -0
- snappy/doc/_images/o9_00000_systole_paper_plane_closer.jpg +0 -0
- snappy/doc/_sources/additional_classes.rst.txt +40 -40
- snappy/doc/_sources/bugs.rst.txt +14 -14
- snappy/doc/_sources/censuses.rst.txt +51 -51
- snappy/doc/_sources/credits.rst.txt +75 -70
- snappy/doc/_sources/development.rst.txt +259 -239
- snappy/doc/_sources/index.rst.txt +182 -115
- snappy/doc/_sources/installing.rst.txt +247 -264
- snappy/doc/_sources/manifold.rst.txt +6 -6
- snappy/doc/_sources/manifoldhp.rst.txt +46 -46
- snappy/doc/_sources/news.rst.txt +355 -283
- snappy/doc/_sources/other.rst.txt +25 -25
- snappy/doc/_sources/platonic_census.rst.txt +20 -20
- snappy/doc/_sources/plink.rst.txt +102 -102
- snappy/doc/_sources/ptolemy.rst.txt +66 -66
- snappy/doc/_sources/ptolemy_classes.rst.txt +42 -42
- snappy/doc/_sources/ptolemy_examples1.rst.txt +298 -297
- snappy/doc/_sources/ptolemy_examples2.rst.txt +363 -363
- snappy/doc/_sources/ptolemy_examples3.rst.txt +301 -301
- snappy/doc/_sources/ptolemy_examples4.rst.txt +61 -61
- snappy/doc/_sources/ptolemy_prelim.rst.txt +105 -105
- snappy/doc/_sources/screenshots.rst.txt +21 -21
- snappy/doc/_sources/snap.rst.txt +87 -87
- snappy/doc/_sources/snappy.rst.txt +28 -28
- snappy/doc/_sources/spherogram.rst.txt +103 -103
- snappy/doc/_sources/todo.rst.txt +47 -47
- snappy/doc/_sources/triangulation.rst.txt +11 -11
- snappy/doc/_sources/tutorial.rst.txt +49 -49
- snappy/doc/_sources/verify.rst.txt +210 -150
- snappy/doc/_sources/verify_internals.rst.txt +79 -90
- snappy/doc/_static/basic.css +924 -902
- snappy/doc/_static/css/badge_only.css +1 -1
- snappy/doc/_static/css/theme.css +1 -1
- snappy/doc/_static/doctools.js +1 -1
- snappy/doc/_static/documentation_options.js +12 -13
- snappy/doc/_static/fonts/Lato/lato-bold.eot +0 -0
- snappy/doc/_static/fonts/Lato/lato-bold.ttf +0 -0
- snappy/doc/_static/fonts/Lato/lato-bold.woff +0 -0
- snappy/doc/_static/fonts/Lato/lato-bold.woff2 +0 -0
- snappy/doc/_static/fonts/Lato/lato-bolditalic.eot +0 -0
- snappy/doc/_static/fonts/Lato/lato-bolditalic.ttf +0 -0
- snappy/doc/_static/fonts/Lato/lato-bolditalic.woff +0 -0
- snappy/doc/_static/fonts/Lato/lato-bolditalic.woff2 +0 -0
- snappy/doc/_static/fonts/Lato/lato-italic.eot +0 -0
- snappy/doc/_static/fonts/Lato/lato-italic.ttf +0 -0
- snappy/doc/_static/fonts/Lato/lato-italic.woff +0 -0
- snappy/doc/_static/fonts/Lato/lato-italic.woff2 +0 -0
- snappy/doc/_static/fonts/Lato/lato-regular.eot +0 -0
- snappy/doc/_static/fonts/Lato/lato-regular.ttf +0 -0
- snappy/doc/_static/fonts/Lato/lato-regular.woff +0 -0
- snappy/doc/_static/fonts/Lato/lato-regular.woff2 +0 -0
- snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-bold.eot +0 -0
- snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-bold.ttf +0 -0
- snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-bold.woff +0 -0
- snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-bold.woff2 +0 -0
- snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-regular.eot +0 -0
- snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-regular.ttf +0 -0
- snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff +0 -0
- snappy/doc/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff2 +0 -0
- snappy/doc/_static/js/versions.js +228 -0
- snappy/doc/_static/language_data.js +199 -199
- snappy/doc/_static/pygments.css +74 -73
- snappy/doc/_static/searchtools.js +125 -71
- snappy/doc/_static/snappy_furo.css +33 -33
- snappy/doc/_static/snappy_sphinx_rtd_theme.css +42 -42
- snappy/doc/_static/sphinx_highlight.js +13 -3
- snappy/doc/additional_classes.html +1499 -1330
- snappy/doc/bugs.html +131 -134
- snappy/doc/censuses.html +426 -445
- snappy/doc/credits.html +180 -180
- snappy/doc/development.html +383 -363
- snappy/doc/genindex.html +1330 -1409
- snappy/doc/index.html +261 -206
- snappy/doc/installing.html +345 -363
- snappy/doc/manifold.html +3451 -2839
- snappy/doc/manifoldhp.html +179 -182
- snappy/doc/news.html +387 -329
- snappy/doc/objects.inv +0 -0
- snappy/doc/other.html +160 -162
- snappy/doc/platonic_census.html +374 -377
- snappy/doc/plink.html +209 -212
- snappy/doc/ptolemy.html +253 -255
- snappy/doc/ptolemy_classes.html +1143 -1146
- snappy/doc/ptolemy_examples1.html +408 -410
- snappy/doc/ptolemy_examples2.html +470 -473
- snappy/doc/ptolemy_examples3.html +413 -416
- snappy/doc/ptolemy_examples4.html +194 -197
- snappy/doc/ptolemy_prelim.html +247 -250
- snappy/doc/py-modindex.html +164 -167
- snappy/doc/screenshots.html +140 -142
- snappy/doc/search.html +134 -137
- snappy/doc/searchindex.js +1 -1
- snappy/doc/snap.html +201 -204
- snappy/doc/snappy.html +180 -182
- snappy/doc/spherogram.html +1210 -1213
- snappy/doc/todo.html +165 -168
- snappy/doc/triangulation.html +1583 -1474
- snappy/doc/tutorial.html +158 -161
- snappy/doc/verify.html +329 -275
- snappy/doc/verify_internals.html +1234 -1691
- snappy/drilling/__init__.py +153 -235
- snappy/drilling/barycentric.py +103 -0
- snappy/drilling/constants.py +0 -2
- snappy/drilling/crush.py +56 -130
- snappy/drilling/cusps.py +12 -6
- snappy/drilling/debug.py +2 -1
- snappy/drilling/exceptions.py +7 -40
- snappy/drilling/moves.py +302 -243
- snappy/drilling/perturb.py +63 -37
- snappy/drilling/shorten.py +36 -0
- snappy/drilling/subdivide.py +0 -5
- snappy/drilling/test.py +23 -0
- snappy/drilling/test_cases.py +126 -0
- snappy/drilling/tracing.py +9 -37
- snappy/exceptions.py +18 -5
- snappy/exterior_to_link/barycentric_geometry.py +2 -4
- snappy/exterior_to_link/main.py +8 -7
- snappy/exterior_to_link/mcomplex_with_link.py +2 -2
- snappy/exterior_to_link/rational_linear_algebra.py +1 -1
- snappy/exterior_to_link/rational_linear_algebra_wrapped.py +1 -1
- snappy/exterior_to_link/test.py +21 -33
- snappy/geometric_structure/__init__.py +212 -0
- snappy/geometric_structure/cusp_neighborhood/__init__.py +3 -0
- snappy/geometric_structure/cusp_neighborhood/complex_cusp_cross_section.py +697 -0
- snappy/geometric_structure/cusp_neighborhood/cusp_cross_section_base.py +484 -0
- snappy/geometric_structure/cusp_neighborhood/exceptions.py +42 -0
- snappy/geometric_structure/cusp_neighborhood/real_cusp_cross_section.py +298 -0
- snappy/geometric_structure/cusp_neighborhood/tiles_for_cusp_neighborhood.py +159 -0
- snappy/geometric_structure/cusp_neighborhood/vertices.py +32 -0
- snappy/geometric_structure/geodesic/__init__.py +0 -0
- snappy/geometric_structure/geodesic/add_core_curves.py +152 -0
- snappy/geometric_structure/geodesic/avoid_core_curves.py +369 -0
- snappy/geometric_structure/geodesic/canonical_keys.py +52 -0
- snappy/geometric_structure/geodesic/check_away_from_core_curve.py +60 -0
- snappy/geometric_structure/geodesic/constants.py +6 -0
- snappy/geometric_structure/geodesic/exceptions.py +22 -0
- snappy/{drilling → geometric_structure/geodesic}/fixed_points.py +34 -9
- snappy/{drilling/geodesic_info.py → geometric_structure/geodesic/geodesic_start_point_info.py} +139 -180
- snappy/geometric_structure/geodesic/graph_trace_helper.py +67 -0
- snappy/geometric_structure/geodesic/line.py +30 -0
- snappy/geometric_structure/geodesic/multiplicity.py +127 -0
- snappy/geometric_structure/geodesic/tiles_for_geodesic.py +101 -0
- snappy/geometric_structure/test.py +22 -0
- snappy/gui.py +23 -13
- snappy/horoviewer.py +7 -7
- snappy/hyperboloid/__init__.py +96 -31
- snappy/hyperboloid/distances.py +245 -0
- snappy/hyperboloid/horoball.py +19 -0
- snappy/hyperboloid/line.py +35 -0
- snappy/hyperboloid/point.py +9 -0
- snappy/hyperboloid/triangle.py +29 -0
- snappy/isometry_signature.py +382 -0
- snappy/len_spec/__init__.py +596 -0
- snappy/len_spec/geodesic_info.py +110 -0
- snappy/len_spec/geodesic_key_info_dict.py +117 -0
- snappy/len_spec/geodesic_piece.py +143 -0
- snappy/len_spec/geometric_structure.py +182 -0
- snappy/len_spec/geometry.py +80 -0
- snappy/len_spec/length_spectrum_geodesic_info.py +170 -0
- snappy/len_spec/spine.py +206 -0
- snappy/len_spec/test.py +24 -0
- snappy/len_spec/test_cases.py +69 -0
- snappy/len_spec/tile.py +275 -0
- snappy/len_spec/word.py +86 -0
- snappy/math_basics.py +39 -13
- snappy/matrix.py +52 -9
- snappy/number.py +12 -6
- snappy/numeric_output_checker.py +2 -3
- snappy/pari.py +8 -4
- snappy/phone_home.py +2 -1
- snappy/polyviewer.py +8 -8
- snappy/ptolemy/__init__.py +1 -1
- snappy/ptolemy/component.py +2 -2
- snappy/ptolemy/coordinates.py +25 -25
- snappy/ptolemy/findLoops.py +9 -9
- snappy/ptolemy/manifoldMethods.py +27 -29
- snappy/ptolemy/polynomial.py +50 -57
- snappy/ptolemy/processFileBase.py +60 -0
- snappy/ptolemy/ptolemyVariety.py +109 -41
- snappy/ptolemy/reginaWrapper.py +4 -4
- snappy/ptolemy/rur.py +1 -1
- snappy/ptolemy/solutionsToPrimeIdealGroebnerBasis.py +9 -9
- snappy/ptolemy/test.py +99 -54
- snappy/ptolemy/utilities.py +1 -1
- snappy/raytracing/__init__.py +64 -0
- snappy/raytracing/additional_horospheres.py +64 -0
- snappy/raytracing/additional_len_spec_choices.py +63 -0
- snappy/raytracing/cohomology_fractal.py +0 -3
- snappy/raytracing/eyeball.py +123 -0
- snappy/raytracing/finite_raytracing_data.py +17 -17
- snappy/raytracing/finite_viewer.py +15 -15
- snappy/raytracing/geodesic_tube_info.py +93 -63
- snappy/raytracing/geodesics.py +94 -64
- snappy/raytracing/geodesics_window.py +56 -34
- snappy/raytracing/gui_utilities.py +21 -6
- snappy/raytracing/hyperboloid_navigation.py +29 -4
- snappy/raytracing/hyperboloid_utilities.py +73 -73
- snappy/raytracing/ideal_raytracing_data.py +121 -91
- snappy/raytracing/inside_viewer.py +199 -66
- snappy/raytracing/pack.py +22 -0
- snappy/raytracing/raytracing_data.py +37 -25
- snappy/raytracing/raytracing_view.py +70 -65
- snappy/raytracing/shaders/Eye.png +0 -0
- snappy/raytracing/shaders/NonGeometric.png +0 -0
- snappy/raytracing/shaders/__init__.py +39 -3
- snappy/raytracing/shaders/fragment.glsl +451 -133
- snappy/raytracing/test.py +29 -0
- snappy/raytracing/tooltip.py +146 -0
- snappy/raytracing/upper_halfspace_utilities.py +42 -9
- snappy/sage_helper.py +67 -134
- snappy/settings.py +90 -77
- snappy/shell.py +2 -0
- snappy/snap/character_varieties.py +2 -2
- snappy/snap/find_field.py +4 -3
- snappy/snap/fundamental_polyhedron.py +2 -2
- snappy/snap/kernel_structures.py +5 -1
- snappy/snap/nsagetools.py +9 -8
- snappy/snap/peripheral/dual_cellulation.py +4 -3
- snappy/snap/peripheral/peripheral.py +2 -2
- snappy/snap/peripheral/surface.py +5 -5
- snappy/snap/peripheral/test.py +1 -1
- snappy/snap/polished_reps.py +8 -8
- snappy/snap/slice_obs_HKL.py +16 -14
- snappy/snap/t3mlite/arrow.py +3 -3
- snappy/snap/t3mlite/edge.py +3 -3
- snappy/snap/t3mlite/homology.py +2 -2
- snappy/snap/t3mlite/mcomplex.py +3 -3
- snappy/snap/t3mlite/simplex.py +12 -0
- snappy/snap/t3mlite/spun.py +18 -17
- snappy/snap/t3mlite/test_vs_regina.py +4 -4
- snappy/snap/test.py +37 -53
- snappy/snap/utilities.py +4 -5
- snappy/test.py +121 -138
- snappy/test_cases.py +263 -0
- snappy/testing.py +131 -0
- snappy/tiling/__init__.py +2 -0
- snappy/tiling/canonical_key_dict.py +59 -0
- snappy/tiling/dict_based_set.py +79 -0
- snappy/tiling/floor.py +49 -0
- snappy/tiling/hyperboloid_dict.py +54 -0
- snappy/tiling/iter_utils.py +78 -0
- snappy/tiling/lifted_tetrahedron.py +22 -0
- snappy/tiling/lifted_tetrahedron_set.py +54 -0
- snappy/tiling/real_hash_dict.py +164 -0
- snappy/tiling/test.py +23 -0
- snappy/tiling/tile.py +215 -0
- snappy/tiling/triangle.py +33 -0
- snappy/tkterminal.py +116 -86
- snappy/twister/main.py +1 -7
- snappy/twister/twister_core.cp38-win_amd64.pyd +0 -0
- snappy/upper_halfspace/__init__.py +78 -17
- snappy/verify/__init__.py +3 -7
- snappy/verify/{verifyCanonical.py → canonical.py} +78 -70
- snappy/verify/complex_volume/adjust_torsion.py +1 -2
- snappy/verify/complex_volume/closed.py +13 -13
- snappy/verify/complex_volume/cusped.py +6 -6
- snappy/verify/complex_volume/extended_bloch.py +5 -8
- snappy/verify/{cuspTranslations.py → cusp_translations.py} +1 -1
- snappy/verify/edge_equations.py +80 -0
- snappy/verify/exceptions.py +0 -55
- snappy/verify/{verifyHyperbolicity.py → hyperbolicity.py} +3 -3
- snappy/verify/interval_newton_shapes_engine.py +7 -5
- snappy/verify/interval_tree.py +5 -5
- snappy/verify/krawczyk_shapes_engine.py +17 -18
- snappy/verify/maximal_cusp_area_matrix/__init__.py +7 -74
- snappy/verify/maximal_cusp_area_matrix/cusp_tiling_engine.py +3 -4
- snappy/verify/maximal_cusp_area_matrix/cusp_translate_engine.py +1 -1
- snappy/verify/{realAlgebra.py → real_algebra.py} +1 -1
- snappy/verify/shapes.py +5 -3
- snappy/verify/short_slopes.py +39 -41
- snappy/verify/{squareExtensions.py → square_extensions.py} +14 -11
- snappy/verify/test.py +57 -60
- snappy/verify/upper_halfspace/extended_matrix.py +1 -1
- snappy/verify/upper_halfspace/finite_point.py +3 -4
- snappy/verify/upper_halfspace/ideal_point.py +9 -9
- snappy/verify/volume.py +2 -2
- snappy/version.py +2 -2
- {snappy-3.1.dist-info → snappy-3.2.dist-info}/METADATA +14 -10
- snappy-3.2.dist-info/RECORD +503 -0
- {snappy-3.1.dist-info → snappy-3.2.dist-info}/WHEEL +1 -1
- {snappy-3.1.dist-info → snappy-3.2.dist-info}/top_level.txt +6 -1
- snappy/__pycache__/__init__.cpython-38.pyc +0 -0
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<h1>Installing SnapPy<a class="headerlink" href="#installing-snappy" title="Link to this heading"></a></h1>
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<p>Here are detailed instructions on how to get SnapPy working on a
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variety of platforms. The current version is 3.2 which was released
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on January 2025. If you encounter any problems installing SnapPy,
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<a class="reference internal" href="bugs.html"><span class="doc">please let us know</span></a>.</p>
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<h2>macOS<a class="headerlink" href="#macos" title="Link to this heading"></a></h2>
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<p>Simply download <a class="reference external" href="https://github.com/3-manifolds/SnapPy/releases/latest/download/SnapPy.dmg">SnapPy.dmg</a>
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and copy SnapPy.app to the Applications folder. Double-click to start
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it, just like any other application. The current version works with macOS 10.14 and
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newer and earlier releases <a class="reference external" href="https://github.com/3-manifolds/SnapPy/releases/">can be found here</a>.</p>
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<h2>Windows<a class="headerlink" href="#windows" title="Link to this heading"></a></h2>
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<p>Simply download and run <a class="reference external" href="https://github.com/3-manifolds/SnapPy/releases/latest/download/InstallSnapPy.exe">InstallSnapPy.exe</a>.
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Earlier releases <a class="reference external" href="https://github.com/3-manifolds/SnapPy/releases/">can be found here</a>.</p>
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<h2>Linux app<a class="headerlink" href="#linux-app" title="Link to this heading"></a></h2>
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<p>Starting with SnapPy 3.2, a completely self-contained SnapPy <a class="reference external" href="https://docs.appimage.org/introduction/quickstart.html#ref-quickstart">AppImage</a>
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is available that should work on any Linux system from the last 5
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years. This AppImage contains its own private copy of Python, so if
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you plan to use SnapPy in your own Python programs, skip ahead to
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<a class="reference internal" href="#python-modules-for-linux">Python Modules for Linux</a>. Here is the recipe for installing the
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AppImage in <code class="docutils literal notranslate"><span class="pre">~/bin</span></code> after you have downloaded the file
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<a class="reference external" href="https://github.com/3-manifolds/SnapPy/releases/latest/download/SnapPy-x86_64.AppImage.">SnapPy-x86_64.AppImage</a>:</p>
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<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">mkdir</span> <span class="o">-</span><span class="n">p</span> <span class="o">~/</span><span class="nb">bin</span>
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<span class="n">mv</span> <span class="o">~/</span><span class="n">Downloads</span><span class="o">/</span><span class="n">SnapPy</span><span class="o">-</span><span class="n">x86_64</span><span class="o">.</span><span class="n">AppImage</span> <span class="o">~/</span><span class="nb">bin</span>
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<span class="n">chmod</span> <span class="o">+</span><span class="n">x</span> <span class="o">~/</span><span class="nb">bin</span><span class="o">/</span><span class="n">SnapPy</span><span class="o">-</span><span class="n">x86_64</span><span class="o">.</span><span class="n">AppImage</span>
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<span class="n">ln</span> <span class="o">-</span><span class="n">s</span> <span class="o">-</span><span class="n">f</span> <span class="o">~/</span><span class="nb">bin</span><span class="o">/</span><span class="n">SnapPy</span><span class="o">-</span><span class="n">x86_64</span><span class="o">.</span><span class="n">AppImage</span> <span class="o">~/</span><span class="nb">bin</span><span class="o">/</span><span class="n">SnapPy</span>
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<span class="o">~/</span><span class="nb">bin</span><span class="o">/</span><span class="n">SnapPy</span><span class="o">-</span><span class="n">x86_64</span><span class="o">.</span><span class="n">AppImage</span> <span class="o">--</span><span class="n">install</span>
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</pre></div>
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</div>
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<p>The last command registers the SnapPy app with your desktop system and
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starts it. Next time, you can start SnapPy by using the desktop
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search tool with GNOME or the main menu with KDE. You can pin also the icon
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to your dash or task bar for easy access. From a terminal window, you
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can also start the app by typing <code class="docutils literal notranslate"><span class="pre">SnapPy</span></code> provided <code class="docutils literal notranslate"><span class="pre">~/bin</span></code> is in
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your <a class="reference external" href="https://opensource.com/article/17/6/set-path-linux">$PATH</a>.</p>
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</section>
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<section id="python-modules-for-macos-or-windows">
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<h2>Python Modules for macOS or Windows<a class="headerlink" href="#python-modules-for-macos-or-windows" title="Link to this heading"></a></h2>
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<p>If you write Python programs on macOS or Windows, you may wish to
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install SnapPy as a Python module into your own copy of Python. We
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support Python 3.9 and up. (On macOS, use a Python downloaded from
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<a class="reference external" href="http://python.org">Python.org</a> and not the one provided by Apple.)
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After installing Python, you may install a SnapPy module from your
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Terminal application or Command Prompt with the command:</p>
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<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">python3</span> <span class="o">-</span><span class="n">m</span> <span class="n">pip</span> <span class="n">install</span> <span class="o">--</span><span class="n">upgrade</span> <span class="o">--</span><span class="n">user</span> <span class="n">snappy</span> <span class="n">snappy_15_knots</span>
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</pre></div>
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</div>
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<p>If you do not want the larger version of HTLinkExteriors that includes
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the 15 crossing knots (it uses 110M of disk space), omit
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<code class="docutils literal notranslate"><span class="pre">snappy_15_knots</span></code> from the command.</p>
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</section>
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<section id="python-modules-for-linux">
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<h2>Python Modules for Linux<a class="headerlink" href="#python-modules-for-linux" title="Link to this heading"></a></h2>
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<p>You can also use SnapPy with your Linux system’s version of Python,
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for example if you want to incorporate SnapPy in your own Python
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scripts. These instructions assume you have system administrator
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(superuser) privileges to install software packages from your Linux
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distribution. (If you’re not a superuser, use either the
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<a class="reference internal" href="#linux-app">Linux app</a> or <a class="reference internal" href="#conda">conda</a>.)</p>
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<p>The first step is to install Python and other requirements; here’s how
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to do that on the most popular Linux distributions:</p>
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<ul>
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<li><p><strong>Ubuntu/Debian/Mint/MX Linux/Elementary:</strong> Tested on Ubuntu 24.04:</p>
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<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">sudo</span> <span class="n">apt</span> <span class="n">install</span> <span class="n">python3</span><span class="o">-</span><span class="n">pip</span> <span class="n">python3</span><span class="o">-</span><span class="n">tk</span>
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</pre></div>
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</div>
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</li>
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<li><p><strong>Fedora</strong>: Tested on Fedora 41:</p>
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<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">sudo</span> <span class="n">dnf</span> <span class="n">install</span> <span class="n">python3</span><span class="o">-</span><span class="n">pip</span> <span class="n">python3</span><span class="o">-</span><span class="n">tkinter</span>
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</pre></div>
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</div>
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</li>
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<li><p><strong>Arch/Manjaro/EndeavourOS</strong>: Install via:</p>
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<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">sudo</span> <span class="n">pacman</span> <span class="o">-</span><span class="n">Sy</span> <span class="n">python</span><span class="o">-</span><span class="n">pip</span> <span class="n">tk</span>
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</pre></div>
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</div>
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</li>
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<li><p><strong>openSUSE</strong>: For Tumbleweed:</p>
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<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">sudo</span> <span class="n">zypper</span> <span class="n">install</span> <span class="n">python3</span><span class="o">-</span><span class="n">pip</span> <span class="n">python3</span><span class="o">-</span><span class="n">tk</span>
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</pre></div>
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</div>
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<p>For Leap, as of version 15.6 you need to ask for a recent version of
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Python or it will give you Python 3.6 which is too old for SnapPy:</p>
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<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">sudo</span> <span class="n">zypper</span> <span class="n">install</span> <span class="n">python312</span><span class="o">-</span><span class="n">pip</span> <span class="n">python312</span><span class="o">-</span><span class="n">tk</span>
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</pre></div>
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</div>
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<p>You will need to replace <code class="docutils literal notranslate"><span class="pre">python3</span></code> by <code class="docutils literal notranslate"><span class="pre">python3.12</span></code> in subsequent
|
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steps.</p>
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</li>
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<li><p><strong>Red Hat Enterprise Linux/CentOS/Rocky Linux/AlmaLinux:</strong>: These instructions
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are for version 8 or later; tested on AlmaLinux 8 and 9:</p>
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<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">sudo</span> <span class="n">dnf</span> <span class="n">install</span> <span class="n">python3</span><span class="mf">.11</span><span class="o">-</span><span class="n">pip</span> <span class="n">python3</span><span class="mf">.11</span><span class="o">-</span><span class="n">tkinter</span>
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</pre></div>
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</div>
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<p>You will also need to replace <code class="docutils literal notranslate"><span class="pre">python3</span></code> by <code class="docutils literal notranslate"><span class="pre">python3.11</span></code> in subsequent
|
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steps.</p>
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</li>
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<p>Next, you need to install the SnapPy Python modules. For this, you can
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either use a <em>virtual environment</em> (<code class="docutils literal notranslate"><span class="pre">python</span> <span class="pre">-m</span> <span class="pre">venv</span></code>) or do a <em>user
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install</em> (<code class="docutils literal notranslate"><span class="pre">pip</span> <span class="pre">install</span> <span class="pre">--user</span></code>). The former will work on any
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version of Linux, whereas the latter is now strongly discouraged on
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many systems (e.g. Ubuntu 24.04). If you have not previously
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installed SnapPy on this computer, we recommend using a virtual
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environment, but suggest a user install if you are upgrading an
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existing version of SnapPy that was installed in that manner.</p>
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<dl>
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<dt>Virtual environment</dt><dd><p>Here is the <a class="reference external" href="https://docs.python.org/3/tutorial/venv.html">official tutorial</a> on using virtual
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environments in Python and an <a class="reference external" href="https://realpython.com/python-virtual-environments-a-primer/">in-depth article</a>. A
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recipe is:</p>
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<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">python3</span> <span class="o">-</span><span class="n">m</span> <span class="n">venv</span> <span class="n">snappy_venv</span>
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<span class="c1"># Switch to snappy_venv's Python</span>
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<span class="n">source</span> <span class="n">snappy_venv</span><span class="o">/</span><span class="nb">bin</span><span class="o">/</span><span class="n">activate</span>
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<span class="n">pip</span> <span class="n">install</span> <span class="n">snappy</span> <span class="n">snappy_15_knots</span>
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<span class="c1"># Start the SnapPy app!</span>
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<span class="n">SnapPy</span>
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<span class="c1"># Return to system Python</span>
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<span class="n">deactivate</span>
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</pre></div>
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</div>
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<p>If you always want to use the <code class="docutils literal notranslate"><span class="pre">snappy_venv</span></code> Python, adjust your
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<a class="reference external" href="https://opensource.com/article/17/6/set-path-linux">$PATH</a> to
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<strong>start</strong> with <code class="docutils literal notranslate"><span class="pre">snappy_venv/bin</span></code>.</p>
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</dd>
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<dt>User install</dt><dd><p>To do a user install with pip, try:</p>
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<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="c1"># Note no "sudo" below!</span>
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<span class="n">python3</span> <span class="o">-</span><span class="n">m</span> <span class="n">pip</span> <span class="n">install</span> <span class="o">--</span><span class="n">upgrade</span> <span class="o">--</span><span class="n">user</span> <span class="n">snappy</span> <span class="n">snappy_15_knots</span>
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</pre></div>
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</div>
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<p>If you get a long error message that starts:</p>
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<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">error</span><span class="p">:</span> <span class="n">externally</span><span class="o">-</span><span class="n">managed</span><span class="o">-</span><span class="n">environment</span>
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</pre></div>
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</div>
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<p>you should probably use a virtual environment; however,
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you can force pip to do a user install via:</p>
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<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="c1"># Note no "sudo" below!</span>
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<span class="n">python3</span> <span class="o">-</span><span class="n">m</span> <span class="n">pip</span> <span class="n">install</span> <span class="o">--</span><span class="n">upgrade</span> <span class="o">--</span><span class="n">user</span> <span class="o">--</span><span class="k">break</span><span class="o">-</span><span class="n">system</span><span class="o">-</span><span class="n">packages</span> <span class="n">snappy</span> <span class="n">snappy_15_knots</span>
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</pre></div>
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</div>
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<p>Despite the scary name, provided you don’t use <code class="docutils literal notranslate"><span class="pre">sudo</span></code>, this will
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not actually modify the system packages, but rather install
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<code class="docutils literal notranslate"><span class="pre">snappy</span></code> into the subdirectory
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<code class="docutils literal notranslate"><span class="pre">~/.local/share/python3.*/site-packages</span></code> of your home directory.</p>
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<p>After a user install, you run the following command to start
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the app:</p>
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<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="o">~/.</span><span class="n">local</span><span class="o">/</span><span class="nb">bin</span><span class="o">/</span><span class="n">SnapPy</span>
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</pre></div>
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</div>
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<p>So that you can start SnapPy with just the command <code class="docutils literal notranslate"><span class="pre">SnapPy</span></code>, make
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sure <code class="docutils literal notranslate"><span class="pre">~/.local/bin</span></code> is in <a class="reference external" href="https://opensource.com/article/17/6/set-path-linux">in your path</a>.</p>
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</dd>
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</dl>
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</section>
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<section id="sagemath">
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<h2>SageMath<a class="headerlink" href="#sagemath" title="Link to this heading"></a></h2>
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<p>SnapPy has some special features when used within <a class="reference external" href="http://sagemath.org">SageMath</a>, the universal mathematics software based on
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Python. This section describes how to install SnapPy into your
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existing copy of SageMath:</p>
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<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">sage</span> <span class="o">-</span><span class="n">pip</span> <span class="n">install</span> <span class="o">--</span><span class="n">upgrade</span> <span class="n">snappy</span> <span class="n">snappy_15_knots</span>
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</pre></div>
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</div>
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<p>Alternatively, SageMath on <a class="reference external" href="https://cocalc.com/">CoCalc</a> (formerly
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the SageMathCloud) also has SnapPy preinstalled, and the graphics
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features even work via the <a class="reference external" href="http://blog.sagemath.com/cocalc/2018/11/05/x11.html">X11 interface</a>, see the
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bottom of that page for more.</p>
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<p>The graphical features may or may not work, depending on how Tkinter
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was configured within Sage. (There is no problem on macOS if you use
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this <a class="reference external" href="https://github.com/3-manifolds/Sage_macOS/releases">SageMath binary</a>.) If the
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graphical features seem to “hang” when you try to start them, type
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<code class="docutils literal notranslate"><span class="pre">%gui</span> <span class="pre">tk</span></code> at the Sage prompt; please note that doing so may break
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Sage’s “attach” feature.</p>
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</section>
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<section id="kitchen-sink">
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<h2>Kitchen sink<a class="headerlink" href="#kitchen-sink" title="Link to this heading"></a></h2>
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<p>SnapPy gains extra features when used in <a class="reference external" href="http://sagemath.org">SageMath</a> and one can use
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Sage’s Python to interact not just with SnapPy but a range of other
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computational tools in low-dimensional topology including
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<a class="reference external" href="http://regina-normal.github.io/">Regina</a>,
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<a class="reference external" href="http://snap-pari.sourceforge.net">snap</a>,
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<a class="reference external" href="https://github.com/3-manifolds/heegaard">heegaard</a>,
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<a class="reference external" href="https://github.com/3-manifolds/gridlink">gridlink</a>,
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and <a class="reference external" href="http://flipper.readthedocs.io">flipper</a>.
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We offer a <a class="reference external" href="https://hub.docker.com/r/computop/sage/">prepackaged Docker image</a> with all of the above tools
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and many more; using this is sometimes the easiest way to get a
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working setup for such multifaceted computations, especially on Windows. For more, watch
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<a class="reference external" href="https://icerm.brown.edu/video_archive/?play=1992">this demonstration</a>.</p>
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</section>
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<section id="conda">
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<h2>Conda<a class="headerlink" href="#conda" title="Link to this heading"></a></h2>
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<p>Conda can be used to install Python on all platforms and is a
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particularly good choice to use SnapPy on the older Linux systems
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often found on high-performance clusters. Here is a recipe for
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installing SnapPy into a new conda environment on macOS or Linux:</p>
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<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">source</span> <span class="o">~/</span><span class="n">miniforge3</span><span class="o">/</span><span class="nb">bin</span><span class="o">/</span><span class="n">activate</span>
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<span class="n">mamba</span> <span class="n">create</span> <span class="o">--</span><span class="n">name</span> <span class="n">snappy_env</span> <span class="n">python</span><span class="o">=</span><span class="mf">3.12</span>
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<span class="n">conda</span> <span class="n">activate</span> <span class="n">snappy_env</span>
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<span class="n">pip</span> <span class="n">install</span> <span class="n">snappy</span>
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<span class="n">python</span> <span class="o">-</span><span class="n">m</span> <span class="n">snappy</span><span class="o">.</span><span class="n">app</span>
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</pre></div>
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</div>
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</section>
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<section id="source-code">
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<h2>Source code<a class="headerlink" href="#source-code" title="Link to this heading"></a></h2>
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<p>The complete source code for all platforms: <a class="reference external" href="https://pypi.python.org/packages/source/s/snappy/snappy-3.2.tar.gz">snappy-3.2.tar.gz</a></p>
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<p>You can also browse our <a class="reference external" href="https://github.com/3-manifolds/SnapPy">source code repository</a> or clone it using <a class="reference external" href="https://git-scm.com/">git</a> via:</p>
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<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">git</span> <span class="n">clone</span> <span class="n">https</span><span class="p">:</span><span class="o">//</span><span class="n">github</span><span class="o">.</span><span class="n">com</span><span class="o">/</span><span class="mi">3</span><span class="o">-</span><span class="n">manifolds</span><span class="o">/</span><span class="n">SnapPy</span><span class="o">.</span><span class="n">git</span>
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</pre></div>
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