smftools 0.1.6__py3-none-any.whl → 0.1.7__py3-none-any.whl

smftools/tools/training/train_lightning_model.py

@@ -0,0 +1,47 @@
+import torch
+from pytorch_lightning import Trainer
+from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
+
+def train_lightning_model(
+    model,
+    datamodule,
+    max_epochs=20,
+    patience=5,
+    monitor_metric="val_loss",
+    checkpoint_path=None,
+):
+    # Device logic
+    if torch.cuda.is_available():
+        accelerator = "gpu"
+        devices = 1
+    elif torch.backends.mps.is_available():
+        accelerator = "mps"
+        devices = 1
+    else:
+        accelerator = "cpu"
+        devices = 1
+
+    # Callbacks
+    callbacks = [
+        EarlyStopping(monitor=monitor_metric, patience=patience, mode="min"),
+    ]
+    if checkpoint_path:
+        callbacks.append(ModelCheckpoint(
+            dirpath=checkpoint_path,
+            filename="{epoch}-{val_loss:.4f}",
+            monitor=monitor_metric,
+            save_top_k=1,
+            mode="min",
+        ))
+
+    # Trainer setup
+    trainer = Trainer(
+        max_epochs=max_epochs,
+        callbacks=callbacks,
+        accelerator=accelerator,
+        devices=devices,
+        log_every_n_steps=10,
+    )
+    trainer.fit(model, datamodule=datamodule)
+    
+    return trainer

smftools/tools/utils/__init__.py

@@ -0,0 +1,2 @@
+from .device import detect_device
+from .grl import GradReverse

smftools/tools/utils/device.py

@@ -0,0 +1,10 @@
+import torch
+
+def detect_device():
+    device = (
+        torch.device('cuda') if torch.cuda.is_available() else
+        torch.device('mps') if torch.backends.mps.is_available() else
+        torch.device('cpu')
+    )
+    print(f"Detected device: {device}")
+    return device

smftools/tools/utils/grl.py

@@ -0,0 +1,14 @@
+import torch
+
+class GradReverse(torch.autograd.Function):
+    @staticmethod
+    def forward(ctx, x, alpha):
+        ctx.alpha = alpha
+        return x.view_as(x)
+
+    @staticmethod
+    def backward(ctx, grad_output):
+        return -ctx.alpha * grad_output, None
+
+def grad_reverse(x, alpha=1.0):
+    return GradReverse.apply(x, alpha)

{smftools-0.1.6.dist-info → smftools-0.1.7.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: smftools
-Version: 0.1.6
+Version: 0.1.7
 Summary: Single Molecule Footprinting Analysis in Python.
 Project-URL: Source, https://github.com/jkmckenna/smftools
 Project-URL: Documentation, https://smftools.readthedocs.io/
@@ -118,7 +118,10 @@ The following CLI tools need to be installed and configured before using the inf
 
 ## Announcements
 
-### 10/01/24 - More recent versions are being updated through github and are not currently on pypi, please install from source. Thank you!
+### 05/29/25 - Version 0.1.6 is available through PyPI.
+Informatics, preprocessing, tools, plotting modules have core functionality that is approaching stability on MacOS(Intel/Silicon) and Linux(Ubuntu). I will work on improving documentation/tutorials shortly. The base PyTorch/Scikit-Learn ML-infrastructure is going through some organizational changes to work with PyTorch Lightning, Hydra, and WanDB to facilitate organizational scaling, multi-device usage, and logging.
+
+### 10/01/24 - More recent versions are being updated frequently. Installation from source over PyPI is recommended!
 
 ### 09/09/24 - The version 0.1.1 package ([smftools-0.1.1](https://pypi.org/project/smftools/)) is installable through pypi!
 The informatics module has been bumped to alpha-phase status. This module can deal with POD5s and unaligned BAMS from nanopore conversion and direct SMF experiments, as well as FASTQs from Illumina conversion SMF experiments. Primary output from this module is an AnnData object containing all relevant SMF data, which is compatible with all downstream smftools modules. The other modules are still in pre-alpha phase. Preprocessing, Tools, and Plotting modules should be promoted to alpha-phase within the next month or so.

smftools-0.1.7.dist-info/RECORD

@@ -0,0 +1,136 @@
+smftools/__init__.py,sha256=0Llj2kZuzB0PvwcQV5RjvMC0KgFW6F__eceV2eYR4TU,551
+smftools/_settings.py,sha256=Ed8lzKUA5ncq5ZRfSp0t6_rphEEjMxts6guttwTZP5Y,409
+smftools/_version.py,sha256=GmypIHlw9-BaSEaoucCIwm0ut1DUut0hUvsyTCr17qk,21
+smftools/readwrite.py,sha256=Y-6ehzoEMUIBWp3WQtyX2Vhe9aHwY1tsoNsVApRJRy4,7303
+smftools/datasets/F1_hybrid_NKG2A_enhander_promoter_GpC_conversion_SMF.h5ad.gz,sha256=q6wJtgFRDln0o20XNCx1qad3lwcdCoylqPN7wskTfI8,2926497
+smftools/datasets/F1_sample_sheet.csv,sha256=9PodIIOXK2eamYPbC6DGnXdzgi9bRDovf296j1aM0ak,259
+smftools/datasets/__init__.py,sha256=xkSTlPuakVYVCuRurif9BceNBDt6bsngJvvjI8757QI,142
+smftools/datasets/dCas9_m6A_invitro_kinetics.h5ad.gz,sha256=niOcVHaYY7h3XyvwSkN-V_NMBaRt2vTP5TrJO0CwMCs,8385050
+smftools/datasets/datasets.py,sha256=0y597Ntp707bOgDwN6O-JEt9yxgplj66p0aj6Zs_IB4,779
+smftools/informatics/__init__.py,sha256=Iz5Jyzln5wKRJ2yu4AWbUx0sMavpMy8XZtGOaLECVmE,391
+smftools/informatics/basecall_pod5s.py,sha256=Ynmxscsxj6qp-zVY0RWodq513oDuHDaHnpqoepB3RUU,3930
+smftools/informatics/conversion_smf.py,sha256=QhlISVi3Z-XqFKyDG_CenLojovAt5-ZhuVe9hus36lg,7177
+smftools/informatics/direct_smf.py,sha256=ylPGFBvRLdxLHeDJjAwq98j8Q8_lfGK3k5JJnQxrwJw,7485
+smftools/informatics/fast5_to_pod5.py,sha256=xfdZU3QluaAcR-q2uBRz8hcBwYt73nCnrFeahvi0OKQ,704
+smftools/informatics/load_adata.py,sha256=90eseT30qkKc9TCwBQ6UvoLbR7_oQ9foLniSxv-x8Q0,10563
+smftools/informatics/readwrite.py,sha256=DgVisHYdkjzaO7suPbUvluImeTc3jqGDlioNveHUxPc,4158
+smftools/informatics/subsample_fasta_from_bed.py,sha256=YqYV09rvEQdeiS5hTTrKa8xYmJfeM3Vk-UUqwpw0qBk,1983
+smftools/informatics/subsample_pod5.py,sha256=zDw9tRcrFRmPI62xkcy9dh8IfsJcuYm7R-FVeBC_g3s,4701
+smftools/informatics/archived/bam_conversion.py,sha256=I8EzXjQixMmqx2oWnoNSH5NURBhfT-krbWHkoi_M964,3330
+smftools/informatics/archived/bam_direct.py,sha256=jbEFtUIiUR8Wlp3po_sWkr19AUNS9WZjglojb9j28vo,3606
+smftools/informatics/archived/basecalls_to_adata.py,sha256=-Nag6lr_NAtU4t8jo0GSMdgIAIfmDge-5VEUPQbEatE,3692
+smftools/informatics/archived/print_bam_query_seq.py,sha256=8Z2ZJEOOlfWYUXiZGjteLWU4yTgvV8KQzEIBHUmamGM,838
+smftools/informatics/helpers/LoadExperimentConfig.py,sha256=6K8AmwWVapx5XbZdhIRLB7tNSr6szpPtzM78hbEts7k,2891
+smftools/informatics/helpers/__init__.py,sha256=-PuxmsaS_IrFndAVNwyd13UqSZ4OawvxK87s2gbZIcU,2803
+smftools/informatics/helpers/align_and_sort_BAM.py,sha256=Ce-_m9wQrLS7MPy-sA4yEHNjBPNmmzoLjLbjjJYkvwM,2470
+smftools/informatics/helpers/aligned_BAM_to_bed.py,sha256=5-5fpE7ovDTwF7FZSwpfTNGcgxFKKE-ANxAxGuVH1ks,2887
+smftools/informatics/helpers/bam_qc.py,sha256=IlrXXpCdTYIv_89SE8D5tJ1wtTzxWGjk9vc-rbC1UjU,2430
+smftools/informatics/helpers/bed_to_bigwig.py,sha256=AazYEZzKgKgukSFwCpeiApzxh1kbt11X4RFqRIiBIaY,1466
+smftools/informatics/helpers/binarize_converted_base_identities.py,sha256=VqXXm61KL2z2xK1AcohvezY69bYHI3uL8RTnDDjOOgI,3756
+smftools/informatics/helpers/canoncall.py,sha256=5WS6lwukc_xYTdPQy0OSj-WLbx0Rg70Cun1lCucY7w8,1741
+smftools/informatics/helpers/complement_base_list.py,sha256=k6EkLtxFoajaIufxw1p0pShJ2nPHyGLTbzZmIFFjB4o,532
+smftools/informatics/helpers/concatenate_fastqs_to_bam.py,sha256=uSWazdNRCa_Cc1SOMreJZBchPIcII4DNluB9PJF_rA8,2713
+smftools/informatics/helpers/converted_BAM_to_adata.py,sha256=sRmOtn0kNosLYfogqslDHg1Azk51l6nfNOLgQOnQjlA,14591
+smftools/informatics/helpers/converted_BAM_to_adata_II.py,sha256=yYjCc5tJ0_-HgcPziccjNXCe8A7kmD5mFfNWcEDcA3o,16482
+smftools/informatics/helpers/count_aligned_reads.py,sha256=uYyUYglF1asiaoxr-LKxPMUEbfyD7FS-dumTg2hJHzQ,2170
+smftools/informatics/helpers/demux_and_index_BAM.py,sha256=2B_UiU05ln3gYvcN9aC_w6qs8j_WAF4pHWZekAYsXm4,2114
+smftools/informatics/helpers/extract_base_identities.py,sha256=cWcAcWK0vhHl-jRpMX2YMLtYezhSdhMfyj4E7rm2VEU,1833
+smftools/informatics/helpers/extract_mods.py,sha256=MbSIiyj3zx7WlSSWMRPriLMkBtxYc1EWZiAAirMVgqA,3865
+smftools/informatics/helpers/extract_read_features_from_bam.py,sha256=nJxGjVe7LtPi8Eu5HuFFQuDi5ZnvDxLMsPfFc5bLfx4,1275
+smftools/informatics/helpers/extract_read_lengths_from_bed.py,sha256=Cw39wgp1eBTV45Wk1l0c9l-upBW5N2OcgyWXTAXln90,678
+smftools/informatics/helpers/extract_readnames_from_BAM.py,sha256=3FxSNqbZ1VsOK2RfHrvevQTzhWATf5E8bZ5yVOqayvk,759
+smftools/informatics/helpers/find_conversion_sites.py,sha256=e7gRmvZSakwhnFJkhfgg9i_85rYEXtbGv4_oS8RoNlE,2329
+smftools/informatics/helpers/generate_converted_FASTA.py,sha256=UniQfERNt4FC5L8T1tzr4cLQOJc3wMBPhuWmC-lC8Fs,3747
+smftools/informatics/helpers/get_chromosome_lengths.py,sha256=sLumLrGsU_Xg_oJcdOpQyjUGpJoT2HbcmxWwbwzXUlE,1036
+smftools/informatics/helpers/get_native_references.py,sha256=fRuyEm9UJkfd5DwHmFb1bxEtNvtSI1_BxGRmrCymGkw,981
+smftools/informatics/helpers/index_fasta.py,sha256=N3IErfSiavYldeaat8xcQgA1MpykoQHcE0gHUeWuClE,267
+smftools/informatics/helpers/make_dirs.py,sha256=lWHXpwC76MFM5sSme9i_WeYUaxutzybendokhny03ds,537
+smftools/informatics/helpers/make_modbed.py,sha256=cOQ97gPfRiCcw_fqboxousXIiOYjp78IFYLbu749U1Y,939
+smftools/informatics/helpers/modQC.py,sha256=LeOBObG8gAVVdgESIMceYhd5AW1gfN7ABo91OQtOzTM,1041
+smftools/informatics/helpers/modcall.py,sha256=LVPrdMNVp2gyQTJ4BNp8NJNm89AueDjsKaY7Gqkluho,1777
+smftools/informatics/helpers/modkit_extract_to_adata.py,sha256=uU5p9A1C9ZSEqU5P9Dc_ssDTGrZlh5uXVYlS0RRKdj0,51833
+smftools/informatics/helpers/ohe_batching.py,sha256=QVOiyl9fYHNIFWM23afYnQo0uaOjf1NR3ASKGVSrmuw,2975
+smftools/informatics/helpers/ohe_layers_decode.py,sha256=gIgUC9L8TFLi-fTnjR4PRzXdUaH5D6WL2Hump6XOoy0,1042
+smftools/informatics/helpers/one_hot_decode.py,sha256=3n4rzY8_aC9YKmgrftsguMsH7fUyQ-DbWmrOYF6la9s,906
+smftools/informatics/helpers/one_hot_encode.py,sha256=5hHigA6-SZLK84WH_RHo06F_6aTg7S3TJgvSr8gxGX8,1968
+smftools/informatics/helpers/plot_read_length_and_coverage_histograms.py,sha256=3PmxZJGjIyPLkJvL7VIILrkE9JzB6Kdxh0IJfoJ0e5k,1942
+smftools/informatics/helpers/run_multiqc.py,sha256=qkw48DeBdTEqzhKFGjMUlvNmTehp8wRPkcxdkwERkHc,980
+smftools/informatics/helpers/separate_bam_by_bc.py,sha256=Fsi8OEmv5Ny13cWoHVV9JmEjVFEXT_ZxbBOlRdmyPbE,1742
+smftools/informatics/helpers/split_and_index_BAM.py,sha256=tLAhLoPfiVJhLYGr3LVcjo0xQ_8-yb60hR46EQUpL-s,1570
+smftools/informatics/helpers/archived/informatics.py,sha256=gKb2ZJ_LcAeEXuQqn9e-QDF_sS4tMpMTr2vZlqa7n54,14572
+smftools/informatics/helpers/archived/load_adata.py,sha256=DhvYYqO9VLsZqhL1WjN9sd-e3fgvdXGlgTP18z1h0L0,33654
+smftools/plotting/__init__.py,sha256=MKT8y7Wq1X1CCDhLxyzYQfqXpEXQZFpZzhi25qGOul4,707
+smftools/plotting/classifiers.py,sha256=8_zabh4NNB1_yVxLD22lfrfl5yfzbEoG3XWqlIqdtrQ,13786
+smftools/plotting/general_plotting.py,sha256=LjN85KyXtuLbDpryMweSps2vFX9GEfc5flmLybLVdn8,9483
+smftools/plotting/position_stats.py,sha256=4XukYIWeWZ_aGSZg1K0t37KA2aknjNNKT5kcKFfuz8Q,17428
+smftools/preprocessing/__init__.py,sha256=2s_46L2qDmM_YoaG3j9YvZ6nTu1T_IF0czhlzC2emQQ,1349
+smftools/preprocessing/append_C_context.py,sha256=mmXju79pKYwrz7WP6v8rztDis4KHHhllBqJCmKky7lk,4414
+smftools/preprocessing/binarize_on_Youden.py,sha256=O5E3vFc2zXMfKW0p0JGDlmRKEx2_VP6dAqfvrumzz00,1797
+smftools/preprocessing/binary_layers_to_ohe.py,sha256=Lxd8knelNTaUozfGMFNMlnrOb6uP28Laj3Ymw6cRHL0,1826
+smftools/preprocessing/calculate_complexity.py,sha256=cXMpFrhkwkPipQo2GZGT5yFknMYUMt1t8gz0Cse1DrA,3288
+smftools/preprocessing/calculate_consensus.py,sha256=6zRpRmb2xdfDu5hctZrReALRb7Pjn8sy8xJZTm3o0nU,2442
+smftools/preprocessing/calculate_converted_read_methylation_stats.py,sha256=CWS3yoDTceZ8kDMWdy9eEo9Nd-yEbr2OehNovyoLR8w,5822
+smftools/preprocessing/calculate_coverage.py,sha256=XhtOo73ZL1kOvpzEaZAkOCtSD870zBPm0H9D7Kpv190,1867
+smftools/preprocessing/calculate_pairwise_differences.py,sha256=5zJbNNaFld5qgKRoPyplCmMHflbvAQ9eKWCXPXPpJ60,1774
+smftools/preprocessing/calculate_pairwise_hamming_distances.py,sha256=e5Mzyex7pT29H2PY014uU4Fi_eewbut1JkzC1ffBbCg,961
+smftools/preprocessing/calculate_position_Youden.py,sha256=9GY_WWwaxpB2Xppck3WT1zHtFOhTXrpuDIgbxLC9A7E,7450
+smftools/preprocessing/calculate_read_length_stats.py,sha256=gNNePwMqYZJidzGgT1ZkfSlvc5Y3I3bi5KNYpP6wQQc,4584
+smftools/preprocessing/clean_NaN.py,sha256=6eWSFFLxipiejcR_BeYJ4sVaayMuiEIoscd0eLvJuL0,1557
+smftools/preprocessing/filter_adata_by_nan_proportion.py,sha256=GZcvr2JCsthX8EMw34S9-W3fc6JElw6ka99Jy6f2JvA,1292
+smftools/preprocessing/filter_converted_reads_on_methylation.py,sha256=LOyBho1ltD2HXWrpO2xEeHk4aiHJxxWuG7_lr2NHSJk,2042
+smftools/preprocessing/filter_reads_on_length.py,sha256=Y4WQO5Mna4Xm9hFYKk66hEQb67GnzCTXPOokebRnV-g,2625
+smftools/preprocessing/flag_duplicate_reads.py,sha256=8izI9ekC8oOY1gf500hg8lM0UQFs0_2j2PFUQwgXES8,6276
+smftools/preprocessing/invert_adata.py,sha256=FS-Yo8o70pIT39CoxRtt73dFr1SGZiZqU1HcIj8zDQg,782
+smftools/preprocessing/load_sample_sheet.py,sha256=cRrf-6FDWu6t0eqZufHaF5qn1DLww3DcN5IEncj5K6k,1497
+smftools/preprocessing/make_dirs.py,sha256=lWHXpwC76MFM5sSme9i_WeYUaxutzybendokhny03ds,537
+smftools/preprocessing/min_non_diagonal.py,sha256=hx1asW8CEmLaIroZISW8EcAf_RnBEC_nofGD8QG0b1E,711
+smftools/preprocessing/recipes.py,sha256=cfKEpKW8TtQLe1CMdSHyPuIgKiWOPn7uP6uMIoRlnaQ,7063
+smftools/preprocessing/subsample_adata.py,sha256=ivJvJIOvEtyvAjqZ7cwEeVedm4QgJxCJEI7sFaTuI3w,2360
+smftools/preprocessing/archives/mark_duplicates.py,sha256=kwfstcWb7KkqeNB321dB-NLe8yd9_hZsSmpL8pCVBQg,8747
+smftools/preprocessing/archives/preprocessing.py,sha256=4mLT09A7vwRZ78FHmuwtv38mH9TQ9qrZc_WjHRhhkIw,34379
+smftools/preprocessing/archives/remove_duplicates.py,sha256=Erooi5_1VOUNfWpzddzmMNYMCl1U1jJryt7ZtMhabAs,699
+smftools/tools/__init__.py,sha256=jnO_-xJyt9Q86QKCZa6GvFCtacx9G4rW_HJtSyeiook,1717
+smftools/tools/apply_hmm.py,sha256=pJXCULay0zbmubrwql368y7yiHAZr2bJhuGx2QUuKnE,9321
+smftools/tools/apply_hmm_batched.py,sha256=1_36BK3ie7lPU4pD93TOBYltmsbdE3VJPqZydiw8I5s,10410
+smftools/tools/calculate_distances.py,sha256=KDWimQ6u-coyxCKrbTm42Fh_Alf_gURBZ0vfFaem848,644
+smftools/tools/calculate_umap.py,sha256=SoZvvnCBjCdshgkW0ODH1lUY97AHkrPXTxWDdYZO8VY,2513
+smftools/tools/call_hmm_peaks.py,sha256=ixnO-KwFYtLiXt8dSa1dEjNR0RO6b-Eswziz1AA647A,4933
+smftools/tools/classifiers.py,sha256=mwSTpWUXBPjmUuV5i_SMG1lIPpHSMCzsKhl8wTbm-Og,36903
+smftools/tools/cluster_adata_on_methylation.py,sha256=UDC5lpW8fZ6O-16ETu-mbflLkNBKuIg7RIzQ9r7knvA,5760
+smftools/tools/display_hmm.py,sha256=4yM-4wpQnWQiim16cUV4ITI-USEEEtaLHqK3LPu5YCg,840
+smftools/tools/general_tools.py,sha256=P9Ecq2SxzmhwLBvWaMpqGGzSPjOiMmG-AspCb0QaaPk,2573
+smftools/tools/hmm_readwrite.py,sha256=DjJ3hunpBQ7N0GVvxL7-0QUas_SkA88LVgL72mVK2cI,359
+smftools/tools/nucleosome_hmm_refinement.py,sha256=yzkx1i3ez678SS_mOMbg6sbI-yHXaUq5eJdaEF43S1w,4649
+smftools/tools/position_stats.py,sha256=FNR5JaD4e3ykrieN922IIyM4GHvwybz--_bgNPhAkNs,9500
+smftools/tools/read_stats.py,sha256=ze-1kuEnFR7UhNzuPB-UgJ_YIHCfDhOgs6oWAo90VaI,2546
+smftools/tools/subset_adata.py,sha256=nBbtAxCNteZCUBmPnZ9swQNyU74XgWM8aJHHWg2AuL0,1025
+smftools/tools/train_hmm.py,sha256=TCzvHlKLoQnKhflZOsXyXlgPhtk54k9EAoP89kUbQ1U,2465
+smftools/tools/archived/classify_methylated_features.py,sha256=Z0N2UKw3luD3CTQ8wcUvdnMY7w-8574OJbEcwzNsy88,2897
+smftools/tools/archived/classify_non_methylated_features.py,sha256=IJERTozEs7IPL7K-VIjq2q2K36wRCW9iiNSYLAXasrA,3256
+smftools/tools/archived/subset_adata_v1.py,sha256=qyU9iCal03edb5aUS3AZ2U4TlL3uQ42jGI9hX3QF7Fc,1047
+smftools/tools/archived/subset_adata_v2.py,sha256=OKZoUpvdURPtckIQxGTWmOI5jLa-_EU62Xs3LyyehnA,1880
+smftools/tools/data/__init__.py,sha256=DEEeRUbOOaeqvy1swkUWPK_TPcjmkU6CcoZAqSa5cfs,91
+smftools/tools/data/anndata_data_module.py,sha256=ReAdYxwPR446eeNRKYCrt9OEhlQ9woY_4qxncJbUh4c,4425
+smftools/tools/data/preprocessing.py,sha256=dSs6Qs3wmlccFPZSpOc-uy1nlFSf68wWQKwF1iTqMok,137
+smftools/tools/evaluation/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+smftools/tools/inference/__init__.py,sha256=VJCamuKjcucG7RPFsjd8vECd_kwPlIz92u64gdPePDY,56
+smftools/tools/inference/lightning_inference.py,sha256=8SXbJWLDgbWiZW0bpC3IMkU01S1d_2zyzB__KxIAuBk,1469
+smftools/tools/models/__init__.py,sha256=bMfPbQ5bDmn_kWv82virLuUhjb12Yow7t_j96afNbyA,421
+smftools/tools/models/base.py,sha256=TRJMyKHGLLUkhEbzRMKIaNf-6yFyCEf5s0Xs0QUeG-0,505
+smftools/tools/models/cnn.py,sha256=M7SYPL-7f2Cyf0zQGmnV2vI6-KCz6rfikHV81XLy-lA,1169
+smftools/tools/models/lightning_base.py,sha256=8Zoj-ij5fSsFAn30hJfdUv-pZGuJLGtwj8HoHK3Msws,1354
+smftools/tools/models/mlp.py,sha256=YXVf1Pix-S2aqOMvmsVzbF_igsf9_MjKbuZw6FBo_nk,561
+smftools/tools/models/positional.py,sha256=7g93nyxnvWTYrfrdvIMWa74DG0obn5FbC2-ngWmCBVo,631
+smftools/tools/models/rnn.py,sha256=DVhG1mJ47ObqaHiLHEwHTpme1vR_uNeTnaaKzC6whgQ,656
+smftools/tools/models/sklearn_models.py,sha256=rFDrq7nJXHd4yCrc5oAvB76m04vdHQRNqWh3RCCOBQ0,1289
+smftools/tools/models/transformer.py,sha256=d0v7vtXNXOHDgOsXMyRkMLObpPpWjLvbFntGnh924g8,4896
+smftools/tools/models/wrappers.py,sha256=HEY2A6-Bk6MtVZ9jOaPT8S1Qi0L98SyEg1nbKqYZoag,697
+smftools/tools/training/__init__.py,sha256=PxAsc6UhXYyZkmwewhYK3OPVZG_se_YfSq75fqc0EBM,56
+smftools/tools/training/train_lightning_model.py,sha256=dtx1lJzgP8eMR1VyXsQo8KnzB6bhF2VY3kHhkEqVV58,1157
+smftools/tools/utils/__init__.py,sha256=yOpzBc9AXbarSRfN8Ixh2Z1uWLGpgpjRR46h6E46_2w,62
+smftools/tools/utils/device.py,sha256=GITrULOty2Fr96Bqt1wi1PaYl_oVgB5Z99Gfn5vQy4o,274
+smftools/tools/utils/grl.py,sha256=BWBDp_kQBigrUzQpRbZzgpfr_WOcd2K2V3MQL-aAIc4,334
+smftools-0.1.7.dist-info/METADATA,sha256=xb2e-EdaGquNERQ-0Pcs3SR4yTi5V_ua10ITchFjTkI,8870
+smftools-0.1.7.dist-info/WHEEL,sha256=1yFddiXMmvYK7QYTqtRNtX66WJ0Mz8PYEiEUoOUUxRY,87
+smftools-0.1.7.dist-info/licenses/LICENSE,sha256=F8LwmL6vMPddaCt1z1S83Kh_OZv50alTlY7BvVx1RXw,1066
+smftools-0.1.7.dist-info/RECORD,,

smftools-0.1.6.dist-info/RECORD

@@ -1,4 +0,0 @@
-smftools-0.1.6.dist-info/METADATA,sha256=03UV92H9JAHE0TlXfQ9Bmw9EU7EM9Gr5BNn9c5Td4Tw,8415
-smftools-0.1.6.dist-info/WHEEL,sha256=1yFddiXMmvYK7QYTqtRNtX66WJ0Mz8PYEiEUoOUUxRY,87
-smftools-0.1.6.dist-info/licenses/LICENSE,sha256=F8LwmL6vMPddaCt1z1S83Kh_OZv50alTlY7BvVx1RXw,1066
-smftools-0.1.6.dist-info/RECORD,,