sierra-research 1.2.22__py3-none-any.whl → 1.3.5__py3-none-any.whl

sierra/__init__.py

@@ -1,18 +1,6 @@
 # Copyright 2021 John Harwell, All rights reserved.
 #
-#  This file is part of SIERRA.
-#
-#  SIERRA is free software: you can redistribute it and/or modify it under the
-#  terms of the GNU General Public License as published by the Free Software
-#  Foundation, either version 3 of the License, or (at your option) any later
-#  version.
-#
-#  SIERRA is distributed in the hope that it will be useful, but WITHOUT ANY
-#  WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
-#  A PARTICULAR PURPOSE.  See the GNU General Public License for more details.
-#
-#  You should have received a copy of the GNU General Public License along with
-#  SIERRA.  If not, see <http://www.gnu.org/licenses/
+#  SPDX-License-Identifier: MIT
 
 # Core packages
 

sierra/core/__init__.py

@@ -1,18 +1,6 @@
 # Copyright 2021 John Harwell, All rights reserved.
 #
-#  This file is part of SIERRA.
-#
-#  SIERRA is free software: you can redistribute it and/or modify it under the
-#  terms of the GNU General Public License as published by the Free Software
-#  Foundation, either version 3 of the License, or (at your option) any later
-#  version.
-#
-#  SIERRA is distributed in the hope that it will be useful, but WITHOUT ANY
-#  WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
-#  A PARTICULAR PURPOSE.  See the GNU General Public License for more details.
-#
-#  You should have received a copy of the GNU General Public License along with
-#  SIERRA.  If not, see <http://www.gnu.org/licenses/
+#  SPDX-License-Identifier: MIT
 
 # Core packages
 

sierra/core/cmdline.py

@@ -1,18 +1,6 @@
 # Copyright 2018 London Lowmanstone, John Harwell, All rights reserved.
 #
-#  This file is part of SIERRA.
-#
-#  SIERRA is free software: you can redistribute it and/or modify it under the
-#  terms of the GNU General Public License as published by the Free Software
-#  Foundation, either version 3 of the License, or (at your option) any later
-#  version.
-#
-#  SIERRA is distributed in the hope that it will be useful, but WITHOUT ANY
-#  WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
-#  A PARTICULAR PURPOSE.  See the GNU General Public License for more details.
-#
-#  You should have received a copy of the GNU General Public License along with
-#  SIERRA.  If not, see <http://www.gnu.org/licenses/
+#  SPDX-License-Identifier: MIT
 #
 """Core command line parsing and validation classes."""
 
@@ -29,7 +17,7 @@ from sierra.core import utils
 
 kVersionMsg = ("reSearch pIpEline for Reproducibility, Reusability and "
                f"Automation (SIERRA) v{sierra.version.__version__}.\n"
-               "License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>\n"
+               "License: MIT.\n"
                "This is free software: you are free to change and redistribute it.\n"
                "SIERRA comes with no warranty.\n\n"
 

sierra/core/config.py

@@ -1,18 +1,6 @@
 # Copyright 2020 John Harwell, All rights reserved.
 #
-#  This file is part of SIERRA.
-#
-#  SIERRA is free software: you can redistribute it and/or modify it under the
-#  terms of the GNU General Public License as published by the Free Software
-#  Foundation, either version 3 of the License, or (at your option) any later
-#  version.
-#
-#  SIERRA is distributed in the hope that it will be useful, but WITHOUT ANY
-#  WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
-#  A PARTICULAR PURPOSE.  See the GNU General Public License for more details.
-#
-#  You should have received a copy of the GNU General Public License along with
-#  SIERRA.  If not, see <http://www.gnu.org/licenses/
+#  SPDX-License-Identifier: MIT
 """
 Contains all SIERRA hard-coded configuration in one place.
 """
@@ -20,6 +8,7 @@ Contains all SIERRA hard-coded configuration in one place.
 # Core packages
 import logging
 import typing as tp
+import packaging
 
 # 3rd party packages
 
@@ -130,7 +119,7 @@ kRendering = {
 }
 kARGoS: tp.Dict[str, tp.Any] = {
     'physics_iter_per_tick': 10,
-    'min_version': 'beta53',
+    'min_version': packaging.version.parse('3.0.0-beta53'),
     'launch_cmd': 'argos3',
     'launch_file_ext': '.argos',
     'n_secs_per_run': 5000,  # seconds

sierra/core/experiment/__init__.py

@@ -1,18 +1,6 @@
 # Copyright 2021 John Harwell, All rights reserved.
 #
-#  This file is part of SIERRA.
-#
-#  SIERRA is free software: you can redistribute it and/or modify it under the
-#  terms of the GNU General Public License as published by the Free Software
-#  Foundation, either version 3 of the License, or (at your option) any later
-#  version.
-#
-#  SIERRA is distributed in the hope that it will be useful, but WITHOUT ANY
-#  WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
-#  A PARTICULAR PURPOSE.  See the GNU General Public License for more details.
-#
-#  You should have received a copy of the GNU General Public License along with
-#  SIERRA.  If not, see <http://www.gnu.org/licenses/
+#  SPDX-License-Identifier: MIT
 
 # Core packages
 

sierra/core/experiment/bindings.py

@@ -1,18 +1,6 @@
 # Copyright 2021 John Harwell, All rights reserved.
 #
-#  This file is part of SIERRA.
-#
-#  SIERRA is free software: you can redistribute it and/or modify it under the
-#  terms of the GNU General Public License as published by the Free Software
-#  Foundation, either version 3 of the License, or (at your option) any later
-#  version.
-#
-#  SIERRA is distributed in the hope that it will be useful, but WITHOUT ANY
-#  WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
-#  A PARTICULAR PURPOSE.  See the GNU General Public License for more details.
-#
-#  You should have received a copy of the GNU General Public License along with
-#  SIERRA.  If not, see <http://www.gnu.org/licenses/
+#  SPDX-License-Identifier: MIT
 
 # Core packages
 import typing as tp

sierra/core/experiment/definition.py

@@ -1,18 +1,6 @@
 # Copyright 2022 John Harwell, All rights reserved.
 #
-#  This file is part of SIERRA.
-#
-#  SIERRA is free software: you can redistribute it and/or modify it under the
-#  terms of the GNU General Public License as published by the Free Software
-#  Foundation, either version 3 of the License, or (at your option) any later
-#  version.
-#
-#  SIERRA is distributed in the hope that it will be useful, but WITHOUT ANY
-#  WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
-#  A PARTICULAR PURPOSE.  See the GNU General Public License for more details.
-#
-#  You should have received a copy of the GNU General Public License along with
-#  SIERRA.  If not, see <http://www.gnu.org/licenses/
+#  SPDX-License-Identifier: MIT
 
 """
 Functionality for reading, writing, and manipulating experiment definitions.

sierra/core/experiment/spec.py

@@ -1,18 +1,6 @@
 # Copyright 2020 John Harwell, All rights reserved.
 #
-#  This file is part of SIERRA.
-#
-#  SIERRA is free software: you can redistribute it and/or modify it under the
-#  terms of the GNU General Public License as published by the Free Software
-#  Foundation, either version 3 of the License, or (at your option) any later
-#  version.
-#
-#  SIERRA is distributed in the hope that it will be useful, but WITHOUT ANY
-#  WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
-#  A PARTICULAR PURPOSE.  See the GNU General Public License for more details.
-#
-#  You should have received a copy of the GNU General Public License along with
-#  SIERRA.  If not, see <http://www.gnu.org/licenses/
+#  SPDX-License-Identifier: MIT
 
 # Core packages
 import typing as tp

sierra/core/experiment/xml.py

@@ -1,18 +1,6 @@
 # Copyright 2022 John Harwell, All rights reserved.
 #
-#  This file is part of SIERRA.
-#
-#  SIERRA is free software: you can redistribute it and/or modify it under the
-#  terms of the GNU General Public License as published by the Free Software
-#  Foundation, either version 3 of the License, or (at your option) any later
-#  version.
-#
-#  SIERRA is distributed in the hope that it will be useful, but WITHOUT ANY
-#  WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
-#  A PARTICULAR PURPOSE.  See the GNU General Public License for more details.
-#
-#  You should have received a copy of the GNU General Public License along with
-#  SIERRA.  If not, see <http://www.gnu.org/licenses/
+#  SPDX-License-Identifier: MIT
 
 """Helper classes for XML experiment definitions.
 

sierra/core/generators/controller_generator_parser.py

@@ -1,18 +1,6 @@
 # Copyright 2018 London Lowmanstone, John Harwell, All rights reserved.
 #
-#  This file is part of SIERRA.
-#
-#  SIERRA is free software: you can redistribute it and/or modify it under the
-#  terms of the GNU General Public License as published by the Free Software
-#  Foundation, either version 3 of the License, or (at your option) any later
-#  version.
-#
-#  SIERRA is distributed in the hope that it will be useful, but WITHOUT ANY
-#  WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
-#  A PARTICULAR PURPOSE.  See the GNU General Public License for more details.
-#
-#  You should have received a copy of the GNU General Public License along with
-#  SIERRA.  If not, see <http://www.gnu.org/licenses/
+#  SPDX-License-Identifier: MIT
 #
 import typing as tp
 import argparse

sierra/core/generators/exp_creator.py

@@ -1,18 +1,6 @@
 # Copyright 2018 John Harwell, All rights reserved.
 #
-#  This file is part of SIERRA.
-#
-#  SIERRA is free software: you can redistribute it and/or modify it under the
-#  terms of the GNU General Public License as published by the Free Software
-#  Foundation, either version 3 of the License, or (at your option) any later
-#  version.
-#
-#  SIERRA is distributed in the hope that it will be useful, but WITHOUT ANY
-#  WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
-#  A PARTICULAR PURPOSE.  See the GNU General Public License for more details.
-#
-#  You should have received a copy of the GNU General Public License along with
-#  SIERRA.  If not, see <http://www.gnu.org/licenses/
+#  SPDX-License-Identifier: MIT
 """Experiment creation classes.
 
 Experiment creation takes an experiment definition `generated` by classes in

sierra/core/generators/exp_generators.py

@@ -1,18 +1,6 @@
 # Copyright 2018 London Lowmanstone, John Harwell, All rights reserved.
 #
-#  This file is part of SIERRA.
-#
-#  SIERRA is free software: you can redistribute it and/or modify it under the
-#  terms of the GNU General Public License as published by the Free Software
-#  Foundation, either version 3 of the License, or (at your option) any later
-#  version.
-#
-#  SIERRA is distributed in the hope that it will be useful, but WITHOUT ANY
-#  WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
-#  A PARTICULAR PURPOSE.  See the GNU General Public License for more details.
-#
-#  You should have received a copy of the GNU General Public License along with
-#  SIERRA.  If not, see <http://www.gnu.org/licenses/
+#  SPDX-License-Identifier: MIT
 """Experiment generation classes.
 
 Experiment generation modifies the

sierra/core/generators/generator_factory.py

@@ -1,18 +1,6 @@
 # Copyright 2018 John Harwell, All rights reserved.
 #
-#  This file is part of SIERRA.
-#
-#  SIERRA is free software: you can redistribute it and/or modify it under the
-#  terms of the GNU General Public License as published by the Free Software
-#  Foundation, either version 3 of the License, or (at your option) any later
-#  version.
-#
-#  SIERRA is distributed in the hope that it will be useful, but WITHOUT ANY
-#  WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
-#  A PARTICULAR PURPOSE.  See the GNU General Public License for more details.
-#
-#  You should have received a copy of the GNU General Public License along with
-#  SIERRA.  If not, see <http://www.gnu.org/licenses/
+#  SPDX-License-Identifier: MIT
 """Factory for combining controller+scenario XML modification generators.
 
 By combining them together, the result can be easily used to apply modifications

sierra/core/graphs/heatmap.py

@@ -1,18 +1,6 @@
 # Copyright 2018 John Harwell, All rights reserved.
 #
-#  This file is part of SIERRA.
-#
-#  SIERRA is free software: you can redistribute it and/or modify it under the
-#  terms of the GNU General Public License as published by the Free Software
-#  Foundation, either version 3 of the License, or (at your option) any later
-#  version.
-#
-#  SIERRA is distributed in the hope that it will be useful, but WITHOUT ANY
-#  WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
-#  A PARTICULAR PURPOSE.  See the GNU General Public License for more details.
-#
-#  You should have received a copy of the GNU General Public License along with
-#  SIERRA.  If not, see <http://www.gnu.org/licenses/
+#  SPDX-License-Identifier: MIT
 #
 
 # Core packages

sierra/core/graphs/scatterplot2D.py

@@ -1,18 +1,6 @@
 # Copyright 2020 John Harwell, All rights reserved.
 #
-#  This file is part of SIERRA.
-#
-#  SIERRA is free software: you can redistribute it and/or modify it under the
-#  terms of the GNU General Public License as published by the Free Software
-#  Foundation, either version 3 of the License, or (at your option) any later
-#  version.
-#
-#  SIERRA is distributed in the hope that it will be useful, but WITHOUT ANY
-#  WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
-#  A PARTICULAR PURPOSE.  See the GNU General Public License for more details.
-#
-#  You should have received a copy of the GNU General Public License along with
-#  SIERRA.  If not, see <http://www.gnu.org/licenses/
+#  SPDX-License-Identifier: MIT
 #
 
 # Core packages

sierra/core/graphs/stacked_line_graph.py

@@ -1,18 +1,6 @@
 # Copyright 2018 John Harwell, All rights reserved.
 #
-#  This file is part of SIERRA.
-#
-#  SIERRA is free software: you can redistribute it and/or modify it under the
-#  terms of the GNU General Public License as published by the Free Software
-#  Foundation, either version 3 of the License, or (at your option) any later
-#  version.
-#
-#  SIERRA is distributed in the hope that it will be useful, but WITHOUT ANY
-#  WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
-#  A PARTICULAR PURPOSE.  See the GNU General Public License for more details.
-#
-#  You should have received a copy of the GNU General Public License along with
-#  SIERRA.  If not, see <http://www.gnu.org/licenses/
+#  SPDX-License-Identifier: MIT
 #
 
 # Core packages
@@ -193,7 +181,7 @@ class StackedLineGraph:
         # which is more amenable to inclusion in academic papers.
 
         # If the legend is not specified, then we assume this is not a graph
-        # that will contain any models.
+        # that will contain any models and/or no legend is desired.
         legend = self.legend
 
         if self.legend is not None:
@@ -209,21 +197,24 @@ class StackedLineGraph:
                       ncol=1,
                       fontsize=self.text_size['legend_label'])
         else:
-            ax.legend(loc='lower center',
-                      bbox_to_anchor=(0.5, -0.5),
-                      ncol=1,
-                      fontsize=self.text_size['legend_label'])
+            ax.legend().remove()
+        #     ax.legend(loc='lower center',
+        #               bbox_to_anchor=(0.5, -0.5),
+        #               ncol=1,
+        #               fontsize=self.text_size['legend_label'])
 
     def _read_stats(self) -> tp.Dict[str, pd.DataFrame]:
         dfs = {}
+
         reader = storage.DataFrameReader('storage.csv')
         if self.stats in ['conf95', 'all']:
             exts = config.kStats['conf95'].exts
+
             for k in exts:
                 ipath = self.stats_root / (self.input_stem + exts[k])
 
                 if utils.path_exists(ipath):
-                    dfs[exts[k]] = reader(ipath)
+                    dfs[k] = reader(ipath)
                 else:
                     self.logger.warning("%sfile not found for '%s'",
                                         exts[k],

sierra/core/graphs/stacked_surface_graph.py

@@ -1,18 +1,6 @@
 # Copyright 2018 John Harwell, All rights reserved.
 #
-#  This file is part of SIERRA.
-#
-#  SIERRA is free software: you can redistribute it and/or modify it under the
-#  terms of the GNU General Public License as published by the Free Software
-#  Foundation, either version 3 of the License, or (at your option) any later
-#  version.
-#
-#  SIERRA is distributed in the hope that it will be useful, but WITHOUT ANY
-#  WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
-#  A PARTICULAR PURPOSE.  See the GNU General Public License for more details.
-#
-#  You should have received a copy of the GNU General Public License along with
-#  SIERRA.  If not, see <http://www.gnu.org/licenses/
+#  SPDX-License-Identifier: MIT
 #
 
 # Core packages

sierra/core/graphs/summary_line_graph.py

@@ -1,18 +1,6 @@
 # Copyright 2018 John Harwell, All rights reserved.
 #
-# This file is part of SIERRA.
-#
-#  SIERRA is free software: you can redistribute it and/or modify it under the
-#  terms of the GNU General Public License as published by the Free Software
-#  Foundation, either version 3 of the License, or (at your option) any later
-#  version.
-#
-#  SIERRA is distributed in the hope that it will be useful, but WITHOUT ANY
-#  WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
-#  A PARTICULAR PURPOSE.  See the GNU General Public License for more details.
-#
-#  You should have received a copy of the GNU General Public License along with
-#  SIERRA.  If not, see <http://www.gnu.org/licenses/
+# SPDX-License-Identifier: MIT
 #
 """
 Linegraph for summarizing the results of a batch experiment in different ways.

sierra/core/hpc/__init__.py

@@ -1,18 +1,6 @@
 # Copyright 2021 John Harwell, All rights reserved.
 #
-#  This file is part of SIERRA.
-#
-#  SIERRA is free software: you can redistribute it and/or modify it under the
-#  terms of the GNU General Public License as published by the Free Software
-#  Foundation, either version 3 of the License, or (at your option) any later
-#  version.
-#
-#  SIERRA is distributed in the hope that it will be useful, but WITHOUT ANY
-#  WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
-#  A PARTICULAR PURPOSE.  See the GNU General Public License for more details.
-#
-#  You should have received a copy of the GNU General Public License along with
-#  SIERRA.  If not, see <http://www.gnu.org/licenses/
+#  SPDX-License-Identifier: MIT
 
 # Core packages
 

sierra/core/hpc/cmdline.py

@@ -1,18 +1,6 @@
 # Copyright 2020 John Harwell, All rights reserved.
 #
-#  This file is part of SIERRA.
-#
-#  SIERRA is free software: you can redistribute it and/or modify it under the
-#  terms of the GNU General Public License as published by the Free Software
-#  Foundation, either version 3 of the License, or (at your option) any later
-#  version.
-#
-#  SIERRA is distributed in the hope that it will be useful, but WITHOUT ANY
-#  WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
-#  A PARTICULAR PURPOSE.  See the GNU General Public License for more details.
-#
-#  You should have received a copy of the GNU General Public License along with
-#  SIERRA.  If not, see <http://www.gnu.org/licenses/
+#  SPDX-License-Identifier: MIT
 """Common cmdline classes for the various HPC plugins.
 
 """

sierra/core/logging.py

@@ -1,18 +1,6 @@
 # Copyright 2021 John Harwell, All rights reserved.
 #
-#  This file is part of SIERRA.
-#
-#  SIERRA is free software: you can redistribute it and/or modify it under the
-#  terms of the GNU General Public License as published by the Free Software
-#  Foundation, either version 3 of the License, or (at your option) any later
-#  version.
-#
-#  SIERRA is distributed in the hope that it will be useful, but WITHOUT ANY
-#  WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
-#  A PARTICULAR PURPOSE.  See the GNU General Public License for more details.
-#
-#  You should have received a copy of the GNU General Public License along with
-#  SIERRA.  If not, see <http://www.gnu.org/licenses/
+#  SPDX-License-Identifier: MIT
 """Extensions to the standard python ``logging`` module for SIERRA.
 
 These include:
@@ -28,25 +16,16 @@ import logging
 
 # 3rd party packages
 import coloredlogs
+from haggis import logs
 
 # Project packages
 
-TRACE = logging.DEBUG - 5
-
-
-def initialize(log_level):
-    def log_for_level(self, message, *args, **kwargs):
-        if self.isEnabledFor(TRACE):
-            self._log(TRACE, message, args, **kwargs)
-
-    def log_to_root(message, *args, **kwargs):
-        logging.log(TRACE, message, *args, **kwargs)
-
-    logging.addLevelName(TRACE, "TRACE")
-    setattr(logging, "TRACE", TRACE)
-    setattr(logging.getLoggerClass(), "trace", log_for_level)
-    setattr(logging, "trace", log_to_root)
 
+def initialize(log_level: str):
+    logs.add_logging_level(level_name='TRACE',
+                           level_num=logging.DEBUG - 5,
+                           method_name=None,
+                           if_exists=logs.RAISE)
     # Needed for static analysis (mypy and/or pylint)
     setattr(logging, '_HAS_DYNAMIC_ATTRIBUTES', True)
 

sierra/core/models/__init__.py

@@ -1,18 +1,6 @@
 # Copyright 2021 John Harwell, All rights reserved.
 #
-#  This file is part of SIERRA.
-#
-#  SIERRA is free software: you can redistribute it and/or modify it under the
-#  terms of the GNU General Public License as published by the Free Software
-#  Foundation, either version 3 of the License, or (at your option) any later
-#  version.
-#
-#  SIERRA is distributed in the hope that it will be useful, but WITHOUT ANY
-#  WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
-#  A PARTICULAR PURPOSE.  See the GNU General Public License for more details.
-#
-#  You should have received a copy of the GNU General Public License along with
-#  SIERRA.  If not, see <http://www.gnu.org/licenses/
+#  SPDX-License-Identifier: MIT
 # Core packages
 
 # 3rd party packages

sierra/core/models/graphs.py

@@ -1,18 +1,6 @@
 # Copyright 2020 John Harwell, All rights reserved.
 #
-#  This file is part of SIERRA.
-#
-#  SIERRA is free software: you can redistribute it and/or modify it under the
-#  terms of the GNU General Public License as published by the Free Software
-#  Foundation, either version 3 of the License, or (at your option) any later
-#  version.
-#
-#  SIERRA is distributed in the hope that it will be useful, but WITHOUT ANY
-#  WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
-#  A PARTICULAR PURPOSE.  See the GNU General Public License for more details.
-#
-#  You should have received a copy of the GNU General Public License along with
-#  SIERRA.  If not, see <http://www.gnu.org/licenses/
+#  SPDX-License-Identifier: MIT
 """
 Graphs which can always be generated, irrespective of model specifics.
 
@@ -20,7 +8,6 @@ For example, you can always compare the model value to the empirical value, and
 plot the difference as error.
 """
 # Core packages
-import os
 import pathlib
 
 # 3rd party packages

sierra/core/models/interface.py

@@ -1,18 +1,6 @@
 # Copyright 2020 John Harwell, All rights reserved.
 #
-#  This file is part of SIERRA.
-#
-#  SIERRA is free software: you can redistribute it and/or modify it under the
-#  terms of the GNU General Public License as published by the Free Software
-#  Foundation, either version 3 of the License, or (at your option) any later
-#  version.
-#
-#  SIERRA is distributed in the hope that it will be useful, but WITHOUT ANY
-#  WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
-#  A PARTICULAR PURPOSE.  See the GNU General Public License for more details.
-#
-#  You should have received a copy of the GNU General Public License along with
-#  SIERRA.  If not, see <http://www.gnu.org/licenses/
+#  SPDX-License-Identifier: MIT
 """Interface classes for the mathematical models framework in SIERRA.
 
 Models can be run and added to any configured graph during stage 4.

sierra/core/pipeline/__init__.py

@@ -1,18 +1,6 @@
 # Copyright 2022 John Harwell, All rights reserved.
 #
-#  This file is part of SIERRA.
-#
-#  SIERRA is free software: you can redistribute it and/or modify it under the
-#  terms of the GNU General Public License as published by the Free Software
-#  Foundation, either version 3 of the License, or (at your option) any later
-#  version.
-#
-#  SIERRA is distributed in the hope that it will be useful, but WITHOUT ANY
-#  WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
-#  A PARTICULAR PURPOSE.  See the GNU General Public License for more details.
-#
-#  You should have received a copy of the GNU General Public License along with
-#  SIERRA.  If not, see <http://www.gnu.org/licenses/
+#  SPDX-License-Identifier: MIT
 # import sierra.core.pipeline.stage1
 # import sierra.core.pipeline.stage2
 # import sierra.core.pipeline.stage3

sierra/core/pipeline/pipeline.py

@@ -1,18 +1,6 @@
 # Copyright 2018 London Lowmanstone, John Harwell, All rights reserved.
 #
-#  This file is part of SIERRA.
-#
-#  SIERRA is free software: you can redistribute it and/or modify it under the
-#  terms of the GNU General Public License as published by the Free Software
-#  Foundation, either version 3 of the License, or (at your option) any later
-#  version.
-#
-#  SIERRA is distributed in the hope that it will be useful, but WITHOUT ANY
-#  WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
-#  A PARTICULAR PURPOSE.  See the GNU General Public License for more details.
-#
-#  You should have received a copy of the GNU General Public License along with
-#  SIERRA.  If not, see <http://www.gnu.org/licenses/
+#  SPDX-License-Identifier: MIT
 """The 5 pipeline stages implemented by SIERRA.
 
 See :ref:`ln-sierra-usage-pipeline` for high-level documentation.

sierra/core/pipeline/stage1/__init__.py

@@ -1 +0,0 @@
-from sierra.core.pipeline.stage1.pipeline_stage1 import PipelineStage1