sequenzo 0.1.18__cp310-cp310-win_amd64.whl → 0.1.20__cp310-cp310-win_amd64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.


This version of sequenzo might be problematic. Click here for more details.

Files changed (399) hide show
  1. sequenzo/__init__.py +39 -7
  2. sequenzo/big_data/clara/utils/get_weighted_diss.c +154 -154
  3. sequenzo/big_data/clara/utils/get_weighted_diss.cp310-win_amd64.pyd +0 -0
  4. sequenzo/clustering/KMedoids.py +39 -0
  5. sequenzo/clustering/clustering_c_code.cp310-win_amd64.pyd +0 -0
  6. sequenzo/clustering/hierarchical_clustering.py +108 -6
  7. sequenzo/define_sequence_data.py +10 -1
  8. sequenzo/dissimilarity_measures/c_code.cp310-win_amd64.pyd +0 -0
  9. sequenzo/dissimilarity_measures/get_distance_matrix.py +2 -3
  10. sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +1 -1
  11. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +154 -154
  12. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cp310-win_amd64.pyd +0 -0
  13. sequenzo/dissimilarity_measures/utils/seqconc.c +154 -154
  14. sequenzo/dissimilarity_measures/utils/seqconc.cp310-win_amd64.pyd +0 -0
  15. sequenzo/dissimilarity_measures/utils/seqdss.c +154 -154
  16. sequenzo/dissimilarity_measures/utils/seqdss.cp310-win_amd64.pyd +0 -0
  17. sequenzo/dissimilarity_measures/utils/seqdur.c +154 -154
  18. sequenzo/dissimilarity_measures/utils/seqdur.cp310-win_amd64.pyd +0 -0
  19. sequenzo/dissimilarity_measures/utils/seqlength.c +154 -154
  20. sequenzo/dissimilarity_measures/utils/seqlength.cp310-win_amd64.pyd +0 -0
  21. sequenzo/multidomain/cat.py +0 -53
  22. sequenzo/multidomain/dat.py +11 -3
  23. sequenzo/multidomain/idcd.py +0 -3
  24. sequenzo/multidomain/linked_polyad.py +0 -1
  25. sequenzo/openmp_setup.py +233 -0
  26. sequenzo/visualization/plot_transition_matrix.py +21 -22
  27. {sequenzo-0.1.18.dist-info → sequenzo-0.1.20.dist-info}/METADATA +71 -10
  28. sequenzo-0.1.20.dist-info/RECORD +272 -0
  29. sequenzo/dissimilarity_measures/setup.py +0 -35
  30. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
  31. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
  32. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
  33. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
  34. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
  35. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
  36. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
  37. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
  38. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
  39. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
  40. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
  41. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
  42. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
  43. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
  44. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
  45. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
  46. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
  47. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
  48. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
  49. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
  50. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
  51. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
  52. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
  53. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
  54. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
  55. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
  56. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
  57. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
  58. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
  59. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
  60. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
  61. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
  62. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
  63. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
  64. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
  65. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
  66. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
  67. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
  68. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
  69. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
  70. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
  71. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
  72. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
  73. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
  74. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
  75. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
  76. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
  77. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
  78. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
  79. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
  80. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
  81. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
  82. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
  83. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
  84. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
  85. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
  86. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
  87. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
  88. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
  89. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
  90. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
  91. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
  92. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
  93. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
  94. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
  95. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
  96. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
  97. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
  98. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
  99. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
  100. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
  101. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
  102. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
  103. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
  104. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
  105. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
  106. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
  107. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
  108. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
  109. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
  110. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
  111. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
  112. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
  113. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
  114. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
  115. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
  116. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
  117. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
  118. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
  119. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
  120. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
  121. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
  122. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
  123. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
  124. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
  125. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
  126. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
  127. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
  128. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
  129. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
  130. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
  131. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
  132. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
  133. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
  134. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
  135. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
  136. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
  137. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
  138. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +0 -181
  139. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +0 -179
  140. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +0 -107
  141. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +0 -280
  142. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +0 -126
  143. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +0 -130
  144. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +0 -223
  145. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +0 -258
  146. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +0 -137
  147. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +0 -136
  148. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +0 -83
  149. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseQR/SparseQR.h +0 -758
  150. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdDeque.h +0 -116
  151. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdList.h +0 -106
  152. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdVector.h +0 -131
  153. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/details.h +0 -84
  154. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +0 -1025
  155. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +0 -642
  156. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Image.h +0 -82
  157. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Kernel.h +0 -79
  158. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/RealSvd2x2.h +0 -55
  159. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/blas.h +0 -440
  160. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapack.h +0 -152
  161. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke.h +0 -16292
  162. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke_mangling.h +0 -17
  163. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +0 -358
  164. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +0 -696
  165. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/BlockMethods.h +0 -1442
  166. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +0 -115
  167. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +0 -177
  168. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/IndexedViewMethods.h +0 -262
  169. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +0 -152
  170. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +0 -95
  171. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ReshapedMethods.h +0 -149
  172. sequenzo/dissimilarity_measures/src/eigen/bench/BenchSparseUtil.h +0 -149
  173. sequenzo/dissimilarity_measures/src/eigen/bench/BenchTimer.h +0 -199
  174. sequenzo/dissimilarity_measures/src/eigen/bench/BenchUtil.h +0 -92
  175. sequenzo/dissimilarity_measures/src/eigen/bench/basicbenchmark.h +0 -63
  176. sequenzo/dissimilarity_measures/src/eigen/bench/btl/generic_bench/utils/utilities.h +0 -90
  177. sequenzo/dissimilarity_measures/src/eigen/bench/btl/libs/BLAS/blas.h +0 -675
  178. sequenzo/dissimilarity_measures/src/eigen/bench/btl/libs/BLAS/c_interface_base.h +0 -73
  179. sequenzo/dissimilarity_measures/src/eigen/bench/perf_monitoring/gemm_common.h +0 -67
  180. sequenzo/dissimilarity_measures/src/eigen/bench/perf_monitoring/gemv_common.h +0 -69
  181. sequenzo/dissimilarity_measures/src/eigen/bench/spbench/spbenchsolver.h +0 -573
  182. sequenzo/dissimilarity_measures/src/eigen/bench/spbench/spbenchstyle.h +0 -95
  183. sequenzo/dissimilarity_measures/src/eigen/bench/tensors/benchmark.h +0 -49
  184. sequenzo/dissimilarity_measures/src/eigen/bench/tensors/tensor_benchmarks.h +0 -597
  185. sequenzo/dissimilarity_measures/src/eigen/blas/BandTriangularSolver.h +0 -97
  186. sequenzo/dissimilarity_measures/src/eigen/blas/GeneralRank1Update.h +0 -44
  187. sequenzo/dissimilarity_measures/src/eigen/blas/PackedSelfadjointProduct.h +0 -53
  188. sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularMatrixVector.h +0 -79
  189. sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularSolverVector.h +0 -88
  190. sequenzo/dissimilarity_measures/src/eigen/blas/Rank2Update.h +0 -57
  191. sequenzo/dissimilarity_measures/src/eigen/blas/common.h +0 -175
  192. sequenzo/dissimilarity_measures/src/eigen/blas/f2c/datatypes.h +0 -24
  193. sequenzo/dissimilarity_measures/src/eigen/blas/level1_cplx_impl.h +0 -155
  194. sequenzo/dissimilarity_measures/src/eigen/blas/level1_impl.h +0 -144
  195. sequenzo/dissimilarity_measures/src/eigen/blas/level1_real_impl.h +0 -122
  196. sequenzo/dissimilarity_measures/src/eigen/blas/level2_cplx_impl.h +0 -360
  197. sequenzo/dissimilarity_measures/src/eigen/blas/level2_impl.h +0 -553
  198. sequenzo/dissimilarity_measures/src/eigen/blas/level2_real_impl.h +0 -306
  199. sequenzo/dissimilarity_measures/src/eigen/blas/level3_impl.h +0 -702
  200. sequenzo/dissimilarity_measures/src/eigen/debug/gdb/__init__.py +0 -1
  201. sequenzo/dissimilarity_measures/src/eigen/debug/gdb/printers.py +0 -314
  202. sequenzo/dissimilarity_measures/src/eigen/demos/mandelbrot/mandelbrot.h +0 -71
  203. sequenzo/dissimilarity_measures/src/eigen/demos/mix_eigen_and_c/binary_library.h +0 -71
  204. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/camera.h +0 -118
  205. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/gpuhelper.h +0 -207
  206. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/icosphere.h +0 -30
  207. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/quaternion_demo.h +0 -114
  208. sequenzo/dissimilarity_measures/src/eigen/demos/opengl/trackball.h +0 -42
  209. sequenzo/dissimilarity_measures/src/eigen/lapack/lapack_common.h +0 -29
  210. sequenzo/dissimilarity_measures/src/eigen/scripts/relicense.py +0 -69
  211. sequenzo/dissimilarity_measures/src/eigen/test/AnnoyingScalar.h +0 -165
  212. sequenzo/dissimilarity_measures/src/eigen/test/MovableScalar.h +0 -35
  213. sequenzo/dissimilarity_measures/src/eigen/test/SafeScalar.h +0 -30
  214. sequenzo/dissimilarity_measures/src/eigen/test/bug1213.h +0 -8
  215. sequenzo/dissimilarity_measures/src/eigen/test/evaluator_common.h +0 -0
  216. sequenzo/dissimilarity_measures/src/eigen/test/gpu_common.h +0 -176
  217. sequenzo/dissimilarity_measures/src/eigen/test/main.h +0 -857
  218. sequenzo/dissimilarity_measures/src/eigen/test/packetmath_test_shared.h +0 -275
  219. sequenzo/dissimilarity_measures/src/eigen/test/product.h +0 -259
  220. sequenzo/dissimilarity_measures/src/eigen/test/random_without_cast_overflow.h +0 -152
  221. sequenzo/dissimilarity_measures/src/eigen/test/solverbase.h +0 -36
  222. sequenzo/dissimilarity_measures/src/eigen/test/sparse.h +0 -204
  223. sequenzo/dissimilarity_measures/src/eigen/test/sparse_solver.h +0 -699
  224. sequenzo/dissimilarity_measures/src/eigen/test/split_test_helper.h +0 -5994
  225. sequenzo/dissimilarity_measures/src/eigen/test/svd_common.h +0 -521
  226. sequenzo/dissimilarity_measures/src/eigen/test/svd_fill.h +0 -118
  227. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/Tensor.h +0 -554
  228. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorArgMax.h +0 -329
  229. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorAssign.h +0 -247
  230. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBase.h +0 -1176
  231. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBlock.h +0 -1559
  232. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBroadcasting.h +0 -1093
  233. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorChipping.h +0 -518
  234. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConcatenation.h +0 -377
  235. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContraction.h +0 -1023
  236. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionBlocking.h +0 -73
  237. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionCuda.h +0 -6
  238. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionGpu.h +0 -1413
  239. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionMapper.h +0 -575
  240. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionSycl.h +0 -1650
  241. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionThreadPool.h +0 -1679
  242. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConversion.h +0 -456
  243. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConvolution.h +0 -1132
  244. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConvolutionSycl.h +0 -544
  245. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorCostModel.h +0 -214
  246. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorCustomOp.h +0 -347
  247. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDevice.h +0 -137
  248. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceCuda.h +0 -6
  249. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceDefault.h +0 -104
  250. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceGpu.h +0 -389
  251. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceSycl.h +0 -1048
  252. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceThreadPool.h +0 -409
  253. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDimensionList.h +0 -236
  254. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDimensions.h +0 -490
  255. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorEvalTo.h +0 -236
  256. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorEvaluator.h +0 -983
  257. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorExecutor.h +0 -703
  258. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorExpr.h +0 -388
  259. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFFT.h +0 -669
  260. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFixedSize.h +0 -379
  261. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorForcedEval.h +0 -237
  262. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorForwardDeclarations.h +0 -191
  263. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFunctors.h +0 -488
  264. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGenerator.h +0 -302
  265. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGlobalFunctions.h +0 -33
  266. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGpuHipCudaDefines.h +0 -99
  267. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGpuHipCudaUndefines.h +0 -44
  268. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIO.h +0 -79
  269. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorImagePatch.h +0 -603
  270. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIndexList.h +0 -738
  271. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorInflation.h +0 -247
  272. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorInitializer.h +0 -82
  273. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIntDiv.h +0 -263
  274. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorLayoutSwap.h +0 -216
  275. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMacros.h +0 -98
  276. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMap.h +0 -327
  277. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMeta.h +0 -311
  278. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMorphing.h +0 -1102
  279. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorPadding.h +0 -708
  280. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorPatch.h +0 -291
  281. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorRandom.h +0 -322
  282. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReduction.h +0 -998
  283. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionCuda.h +0 -6
  284. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionGpu.h +0 -966
  285. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionSycl.h +0 -582
  286. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorRef.h +0 -454
  287. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReverse.h +0 -465
  288. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorScan.h +0 -528
  289. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorScanSycl.h +0 -513
  290. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorShuffling.h +0 -471
  291. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorStorage.h +0 -161
  292. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorStriding.h +0 -346
  293. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorTrace.h +0 -303
  294. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorTraits.h +0 -264
  295. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorUInt128.h +0 -249
  296. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorVolumePatch.h +0 -629
  297. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/DynamicSymmetry.h +0 -293
  298. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/StaticSymmetry.h +0 -236
  299. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/Symmetry.h +0 -338
  300. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/util/TemplateGroupTheory.h +0 -669
  301. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/Barrier.h +0 -67
  302. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/EventCount.h +0 -249
  303. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/NonBlockingThreadPool.h +0 -486
  304. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/RunQueue.h +0 -236
  305. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadCancel.h +0 -23
  306. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadEnvironment.h +0 -40
  307. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadLocal.h +0 -301
  308. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadPoolInterface.h +0 -48
  309. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadYield.h +0 -20
  310. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/CXX11Meta.h +0 -537
  311. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/CXX11Workarounds.h +0 -88
  312. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/EmulateArray.h +0 -261
  313. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/MaxSizeVector.h +0 -158
  314. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffJacobian.h +0 -108
  315. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffScalar.h +0 -730
  316. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffVector.h +0 -220
  317. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/BVH/BVAlgorithms.h +0 -293
  318. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/BVH/KdBVH.h +0 -223
  319. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Eigenvalues/ArpackSelfAdjointEigenSolver.h +0 -790
  320. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/EulerAngles/EulerAngles.h +0 -355
  321. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/EulerAngles/EulerSystem.h +0 -305
  322. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/FFT/ei_fftw_impl.h +0 -261
  323. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/FFT/ei_kissfft_impl.h +0 -449
  324. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h +0 -187
  325. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/DGMRES.h +0 -511
  326. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/GMRES.h +0 -335
  327. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IDRS.h +0 -436
  328. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IncompleteLU.h +0 -90
  329. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IterationController.h +0 -154
  330. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/MINRES.h +0 -267
  331. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/Scaling.h +0 -193
  332. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h +0 -305
  333. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMcovar.h +0 -84
  334. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMonestep.h +0 -202
  335. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMpar.h +0 -160
  336. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMqrsolv.h +0 -188
  337. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LevenbergMarquardt.h +0 -396
  338. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixExponential.h +0 -441
  339. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixFunction.h +0 -569
  340. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixLogarithm.h +0 -373
  341. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixPower.h +0 -705
  342. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixSquareRoot.h +0 -368
  343. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/StemFunction.h +0 -117
  344. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MoreVectorization/MathFunctions.h +0 -95
  345. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/HybridNonLinearSolver.h +0 -601
  346. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/LevenbergMarquardt.h +0 -657
  347. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/chkder.h +0 -66
  348. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/covar.h +0 -70
  349. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/dogleg.h +0 -107
  350. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/fdjac1.h +0 -79
  351. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/lmpar.h +0 -298
  352. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/qrsolv.h +0 -91
  353. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1mpyq.h +0 -30
  354. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1updt.h +0 -99
  355. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/rwupdt.h +0 -49
  356. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NumericalDiff/NumericalDiff.h +0 -130
  357. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/Companion.h +0 -280
  358. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialSolver.h +0 -428
  359. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialUtils.h +0 -143
  360. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineInplaceLU.h +0 -352
  361. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrix.h +0 -862
  362. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrixBase.h +0 -212
  363. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineProduct.h +0 -295
  364. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineStorage.h +0 -259
  365. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineUtil.h +0 -89
  366. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockOfDynamicSparseMatrix.h +0 -122
  367. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockSparseMatrix.h +0 -1079
  368. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/DynamicSparseMatrix.h +0 -404
  369. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MarketIO.h +0 -282
  370. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MatrixMarketIterator.h +0 -247
  371. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/RandomSetter.h +0 -349
  372. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsArrayAPI.h +0 -286
  373. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsBFloat16.h +0 -68
  374. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsFunctors.h +0 -357
  375. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsHalf.h +0 -66
  376. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsImpl.h +0 -1959
  377. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsPacketMath.h +0 -118
  378. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/HipVectorCompatibility.h +0 -67
  379. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsArrayAPI.h +0 -167
  380. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsBFloat16.h +0 -58
  381. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsFunctors.h +0 -330
  382. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsHalf.h +0 -58
  383. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsImpl.h +0 -2045
  384. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsPacketMath.h +0 -79
  385. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/BesselFunctions.h +0 -46
  386. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/SpecialFunctions.h +0 -16
  387. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/BesselFunctions.h +0 -46
  388. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/SpecialFunctions.h +0 -16
  389. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/GPU/SpecialFunctions.h +0 -369
  390. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/BesselFunctions.h +0 -54
  391. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/SpecialFunctions.h +0 -34
  392. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/Spline.h +0 -507
  393. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFitting.h +0 -431
  394. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFwd.h +0 -93
  395. sequenzo/dissimilarity_measures/src/eigen/unsupported/test/matrix_functions.h +0 -67
  396. sequenzo-0.1.18.dist-info/RECORD +0 -638
  397. {sequenzo-0.1.18.dist-info → sequenzo-0.1.20.dist-info}/WHEEL +0 -0
  398. {sequenzo-0.1.18.dist-info → sequenzo-0.1.20.dist-info}/licenses/LICENSE +0 -0
  399. {sequenzo-0.1.18.dist-info → sequenzo-0.1.20.dist-info}/top_level.txt +0 -0
@@ -1,1102 +0,0 @@
1
- // This file is part of Eigen, a lightweight C++ template library
2
- // for linear algebra.
3
- //
4
- // Copyright (C) 2014 Benoit Steiner <benoit.steiner.goog@gmail.com>
5
- //
6
- // This Source Code Form is subject to the terms of the Mozilla
7
- // Public License v. 2.0. If a copy of the MPL was not distributed
8
- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
-
10
- #ifndef EIGEN_CXX11_TENSOR_TENSOR_MORPHING_H
11
- #define EIGEN_CXX11_TENSOR_TENSOR_MORPHING_H
12
-
13
- namespace Eigen {
14
-
15
- /** \class TensorReshaping
16
- * \ingroup CXX11_Tensor_Module
17
- *
18
- * \brief Tensor reshaping class.
19
- *
20
- *
21
- */
22
- namespace internal {
23
- template<typename NewDimensions, typename XprType>
24
- struct traits<TensorReshapingOp<NewDimensions, XprType> > : public traits<XprType>
25
- {
26
- typedef typename XprType::Scalar Scalar;
27
- typedef traits<XprType> XprTraits;
28
- typedef typename XprTraits::StorageKind StorageKind;
29
- typedef typename XprTraits::Index Index;
30
- typedef typename XprType::Nested Nested;
31
- typedef typename remove_reference<Nested>::type _Nested;
32
- static const int NumDimensions = array_size<NewDimensions>::value;
33
- static const int Layout = XprTraits::Layout;
34
- typedef typename XprTraits::PointerType PointerType;
35
- };
36
-
37
- template<typename NewDimensions, typename XprType>
38
- struct eval<TensorReshapingOp<NewDimensions, XprType>, Eigen::Dense>
39
- {
40
- typedef const TensorReshapingOp<NewDimensions, XprType>EIGEN_DEVICE_REF type;
41
- };
42
-
43
- template<typename NewDimensions, typename XprType>
44
- struct nested<TensorReshapingOp<NewDimensions, XprType>, 1, typename eval<TensorReshapingOp<NewDimensions, XprType> >::type>
45
- {
46
- typedef TensorReshapingOp<NewDimensions, XprType> type;
47
- };
48
-
49
- } // end namespace internal
50
-
51
-
52
-
53
- template<typename NewDimensions, typename XprType>
54
- class TensorReshapingOp : public TensorBase<TensorReshapingOp<NewDimensions, XprType>, WriteAccessors>
55
- {
56
- public:
57
- typedef TensorBase<TensorReshapingOp<NewDimensions, XprType>, WriteAccessors> Base;
58
- typedef typename Eigen::internal::traits<TensorReshapingOp>::Scalar Scalar;
59
- typedef typename internal::remove_const<typename XprType::CoeffReturnType>::type CoeffReturnType;
60
- typedef typename Eigen::internal::nested<TensorReshapingOp>::type Nested;
61
- typedef typename Eigen::internal::traits<TensorReshapingOp>::StorageKind StorageKind;
62
- typedef typename Eigen::internal::traits<TensorReshapingOp>::Index Index;
63
-
64
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorReshapingOp(const XprType& expr, const NewDimensions& dims)
65
- : m_xpr(expr), m_dims(dims) {}
66
-
67
- EIGEN_DEVICE_FUNC
68
- const NewDimensions& dimensions() const { return m_dims; }
69
-
70
- EIGEN_DEVICE_FUNC
71
- const typename internal::remove_all<typename XprType::Nested>::type&
72
- expression() const { return m_xpr; }
73
-
74
- EIGEN_TENSOR_INHERIT_ASSIGNMENT_OPERATORS(TensorReshapingOp)
75
-
76
- protected:
77
- typename XprType::Nested m_xpr;
78
- const NewDimensions m_dims;
79
- };
80
-
81
-
82
- // Eval as rvalue
83
- template<typename NewDimensions, typename ArgType, typename Device>
84
- struct TensorEvaluator<const TensorReshapingOp<NewDimensions, ArgType>, Device>
85
- {
86
- typedef TensorReshapingOp<NewDimensions, ArgType> XprType;
87
- typedef NewDimensions Dimensions;
88
-
89
- typedef typename XprType::Index Index;
90
- typedef typename XprType::Scalar Scalar;
91
- typedef typename XprType::CoeffReturnType CoeffReturnType;
92
- typedef typename PacketType<CoeffReturnType, Device>::type PacketReturnType;
93
- typedef StorageMemory<CoeffReturnType, Device> Storage;
94
- typedef typename Storage::Type EvaluatorPointerType;
95
- typedef StorageMemory<typename internal::remove_const<CoeffReturnType>::type, Device> ConstCastStorage;
96
-
97
- static const int NumOutputDims = internal::array_size<Dimensions>::value;
98
- static const int NumInputDims = internal::array_size<typename TensorEvaluator<ArgType, Device>::Dimensions>::value;
99
-
100
- enum ReshapingKind {
101
- // We do not use layout information to determine reshaping kind.
102
- // Depending on the layout `N` can be inner or outer dimension.
103
- OneByN = 0, // expr.reshape(1, N)
104
- NByOne = 1, // expr.reshape(N, 1)
105
- Runtime = 2 // Reshape dimensions are dynamic (specified at runtime).
106
- };
107
-
108
- // clang-format off
109
- static const ReshapingKind kind =
110
- #if defined(EIGEN_HAS_INDEX_LIST)
111
- (NumOutputDims == 2 && internal::index_statically_eq<NewDimensions>(/*index=*/0, /*value=*/1)) ? OneByN
112
- : (NumOutputDims == 2 && internal::index_statically_eq<NewDimensions>(/*index=*/1, /*value=*/1)) ? NByOne
113
- : Runtime;
114
- #else
115
- Runtime;
116
- #endif
117
- // clang-format on
118
-
119
- enum {
120
- IsAligned = TensorEvaluator<ArgType, Device>::IsAligned,
121
- PacketAccess = TensorEvaluator<ArgType, Device>::PacketAccess,
122
- // For trivial reshapes with raw access to underlying data we will provide
123
- // zero overhead block access.
124
- // TODO(ezhulenev): Consider adding block access without raw access?
125
- BlockAccess = TensorEvaluator<ArgType, Device>::RawAccess &&
126
- NumInputDims > 0 && NumOutputDims > 0,
127
- PreferBlockAccess = false,
128
- Layout = TensorEvaluator<ArgType, Device>::Layout,
129
- CoordAccess = false, // to be implemented
130
- RawAccess = TensorEvaluator<ArgType, Device>::RawAccess
131
- };
132
-
133
- typedef typename internal::remove_const<Scalar>::type ScalarNoConst;
134
-
135
- //===- Tensor block evaluation strategy (see TensorBlock.h) -------------===//
136
- typedef internal::TensorBlockDescriptor<NumOutputDims, Index> TensorBlockDesc;
137
- typedef internal::TensorBlockScratchAllocator<Device> TensorBlockScratch;
138
-
139
- typedef
140
- typename internal::TensorMaterializedBlock<ScalarNoConst, NumOutputDims,
141
- Layout, Index>
142
- TensorBlock;
143
- //===--------------------------------------------------------------------===//
144
-
145
- EIGEN_STRONG_INLINE TensorEvaluator(const XprType& op, const Device& device)
146
- : m_impl(op.expression(), device), m_dimensions(op.dimensions())
147
- {
148
- // The total size of the reshaped tensor must be equal to the total size
149
- // of the input tensor.
150
- eigen_assert(internal::array_prod(m_impl.dimensions()) == internal::array_prod(op.dimensions()));
151
- }
152
-
153
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Dimensions& dimensions() const { return m_dimensions; }
154
-
155
- #ifdef EIGEN_USE_THREADS
156
- template <typename EvalSubExprsCallback>
157
- EIGEN_STRONG_INLINE void evalSubExprsIfNeededAsync(
158
- EvaluatorPointerType data, EvalSubExprsCallback done) {
159
- m_impl.evalSubExprsIfNeededAsync(data, std::move(done));
160
- }
161
- #endif
162
-
163
- EIGEN_STRONG_INLINE bool evalSubExprsIfNeeded(EvaluatorPointerType data) {
164
- return m_impl.evalSubExprsIfNeeded(data);
165
- }
166
- EIGEN_STRONG_INLINE void cleanup() {
167
- m_impl.cleanup();
168
- }
169
-
170
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE CoeffReturnType coeff(Index index) const
171
- {
172
- return m_impl.coeff(index);
173
- }
174
-
175
- template<int LoadMode>
176
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE PacketReturnType packet(Index index) const
177
- {
178
- return m_impl.template packet<LoadMode>(index);
179
- }
180
-
181
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorOpCost costPerCoeff(bool vectorized) const {
182
- return m_impl.costPerCoeff(vectorized);
183
- }
184
-
185
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
186
- internal::TensorBlockResourceRequirements getResourceRequirements() const {
187
- return internal::TensorBlockResourceRequirements::any();
188
- }
189
-
190
- // required in block(OutputTensorBlock* output_block) const
191
- // For C++03 compatibility this must be defined outside the method
192
- struct BlockIteratorState {
193
- Index stride;
194
- Index span;
195
- Index size;
196
- Index count;
197
- };
198
-
199
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorBlock
200
- block(TensorBlockDesc& desc, TensorBlockScratch& scratch,
201
- bool /*root_of_expr_ast*/ = false) const {
202
- eigen_assert(m_impl.data() != NULL);
203
- eigen_assert((kind == Runtime) ||
204
- (kind == OneByN && desc.dimensions()[0] == 1) ||
205
- (kind == NByOne && desc.dimensions()[1] == 1));
206
-
207
- if (kind == OneByN || kind == NByOne) {
208
- // We can guarantee at compile time that block is just a contiguous slice
209
- // of the underlying expression memory buffer.
210
- return TensorBlock(internal::TensorBlockKind::kView,
211
- m_impl.data() + desc.offset(), desc.dimensions());
212
- } else {
213
- // This will do additional runtime checks, and in the end it might be also
214
- // a view, or it might be a block materialized in the temporary buffer.
215
- return TensorBlock::materialize(m_impl.data(), m_dimensions, desc,
216
- scratch);
217
- }
218
- }
219
-
220
- EIGEN_DEVICE_FUNC typename Storage::Type data() const {
221
- return constCast(m_impl.data());
222
- }
223
-
224
- EIGEN_DEVICE_FUNC const TensorEvaluator<ArgType, Device>& impl() const { return m_impl; }
225
-
226
- #ifdef EIGEN_USE_SYCL
227
- // binding placeholder accessors to a command group handler for SYCL
228
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void bind(cl::sycl::handler &cgh) const {
229
- m_impl.bind(cgh);
230
- }
231
- #endif
232
- protected:
233
- TensorEvaluator<ArgType, Device> m_impl;
234
- NewDimensions m_dimensions;
235
- };
236
-
237
-
238
- // Eval as lvalue
239
- template<typename NewDimensions, typename ArgType, typename Device>
240
- struct TensorEvaluator<TensorReshapingOp<NewDimensions, ArgType>, Device>
241
- : public TensorEvaluator<const TensorReshapingOp<NewDimensions, ArgType>, Device>
242
-
243
- {
244
- typedef TensorEvaluator<const TensorReshapingOp<NewDimensions, ArgType>, Device> Base;
245
- typedef TensorReshapingOp<NewDimensions, ArgType> XprType;
246
- typedef NewDimensions Dimensions;
247
-
248
- enum {
249
- IsAligned = TensorEvaluator<ArgType, Device>::IsAligned,
250
- PacketAccess = TensorEvaluator<ArgType, Device>::PacketAccess,
251
- BlockAccess = TensorEvaluator<ArgType, Device>::RawAccess,
252
- PreferBlockAccess = false,
253
- Layout = TensorEvaluator<ArgType, Device>::Layout,
254
- CoordAccess = false, // to be implemented
255
- RawAccess = TensorEvaluator<ArgType, Device>::RawAccess
256
- };
257
-
258
- EIGEN_STRONG_INLINE TensorEvaluator(const XprType& op, const Device& device)
259
- : Base(op, device)
260
- { }
261
-
262
- typedef typename XprType::Index Index;
263
- typedef typename XprType::Scalar Scalar;
264
- typedef typename XprType::CoeffReturnType CoeffReturnType;
265
- typedef typename PacketType<CoeffReturnType, Device>::type PacketReturnType;
266
-
267
- //===- Tensor block evaluation strategy (see TensorBlock.h) -------------===//
268
- typedef internal::TensorBlockDescriptor<TensorEvaluator::NumOutputDims, Index>
269
- TensorBlockDesc;
270
- //===--------------------------------------------------------------------===//
271
-
272
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE CoeffReturnType& coeffRef(Index index)
273
- {
274
- return this->m_impl.coeffRef(index);
275
- }
276
-
277
- template <int StoreMode> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
278
- void writePacket(Index index, const PacketReturnType& x)
279
- {
280
- this->m_impl.template writePacket<StoreMode>(index, x);
281
- }
282
-
283
- template <typename TensorBlock>
284
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void writeBlock(
285
- const TensorBlockDesc& desc, const TensorBlock& block) {
286
- assert(this->m_impl.data() != NULL);
287
-
288
- typedef typename TensorBlock::XprType TensorBlockExpr;
289
- typedef internal::TensorBlockAssignment<
290
- Scalar, TensorEvaluator::NumOutputDims, TensorBlockExpr, Index>
291
- TensorBlockAssign;
292
-
293
- TensorBlockAssign::Run(
294
- TensorBlockAssign::target(desc.dimensions(),
295
- internal::strides<Layout>(this->dimensions()),
296
- this->m_impl.data(), desc.offset()),
297
- block.expr());
298
- }
299
- };
300
-
301
-
302
- /** \class TensorSlicing
303
- * \ingroup CXX11_Tensor_Module
304
- *
305
- * \brief Tensor slicing class.
306
- *
307
- *
308
- */
309
- namespace internal {
310
- template<typename StartIndices, typename Sizes, typename XprType>
311
- struct traits<TensorSlicingOp<StartIndices, Sizes, XprType> > : public traits<XprType>
312
- {
313
- typedef typename XprType::Scalar Scalar;
314
- typedef traits<XprType> XprTraits;
315
- typedef typename XprTraits::StorageKind StorageKind;
316
- typedef typename XprTraits::Index Index;
317
- typedef typename XprType::Nested Nested;
318
- typedef typename remove_reference<Nested>::type _Nested;
319
- static const int NumDimensions = array_size<StartIndices>::value;
320
- static const int Layout = XprTraits::Layout;
321
- typedef typename XprTraits::PointerType PointerType;
322
- };
323
-
324
- template<typename StartIndices, typename Sizes, typename XprType>
325
- struct eval<TensorSlicingOp<StartIndices, Sizes, XprType>, Eigen::Dense>
326
- {
327
- typedef const TensorSlicingOp<StartIndices, Sizes, XprType>EIGEN_DEVICE_REF type;
328
- };
329
-
330
- template<typename StartIndices, typename Sizes, typename XprType>
331
- struct nested<TensorSlicingOp<StartIndices, Sizes, XprType>, 1, typename eval<TensorSlicingOp<StartIndices, Sizes, XprType> >::type>
332
- {
333
- typedef TensorSlicingOp<StartIndices, Sizes, XprType> type;
334
- };
335
-
336
- } // end namespace internal
337
-
338
-
339
-
340
- template<typename StartIndices, typename Sizes, typename XprType>
341
- class TensorSlicingOp : public TensorBase<TensorSlicingOp<StartIndices, Sizes, XprType> >
342
- {
343
- public:
344
- typedef TensorBase<TensorSlicingOp<StartIndices, Sizes, XprType> > Base;
345
- typedef typename Eigen::internal::traits<TensorSlicingOp>::Scalar Scalar;
346
- typedef typename XprType::CoeffReturnType CoeffReturnType;
347
- typedef typename Eigen::internal::nested<TensorSlicingOp>::type Nested;
348
- typedef typename Eigen::internal::traits<TensorSlicingOp>::StorageKind StorageKind;
349
- typedef typename Eigen::internal::traits<TensorSlicingOp>::Index Index;
350
-
351
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorSlicingOp(const XprType& expr, const StartIndices& indices, const Sizes& sizes)
352
- : m_xpr(expr), m_indices(indices), m_sizes(sizes) {}
353
-
354
- EIGEN_DEVICE_FUNC
355
- const StartIndices& startIndices() const { return m_indices; }
356
- EIGEN_DEVICE_FUNC
357
- const Sizes& sizes() const { return m_sizes; }
358
-
359
- EIGEN_DEVICE_FUNC
360
- const typename internal::remove_all<typename XprType::Nested>::type&
361
- expression() const { return m_xpr; }
362
-
363
- EIGEN_TENSOR_INHERIT_ASSIGNMENT_OPERATORS(TensorSlicingOp)
364
-
365
- protected:
366
- typename XprType::Nested m_xpr;
367
- const StartIndices m_indices;
368
- const Sizes m_sizes;
369
- };
370
-
371
-
372
- // Fixme: figure out the exact threshold
373
- namespace {
374
- template <typename Index, typename Device, bool BlockAccess> struct MemcpyTriggerForSlicing {
375
- EIGEN_DEVICE_FUNC MemcpyTriggerForSlicing(const Device& device) : threshold_(2 * device.numThreads()) { }
376
- EIGEN_DEVICE_FUNC bool operator ()(Index total, Index contiguous) const {
377
- const bool prefer_block_evaluation = BlockAccess && total > 32*1024;
378
- return !prefer_block_evaluation && contiguous > threshold_;
379
- }
380
-
381
- private:
382
- Index threshold_;
383
- };
384
-
385
- // It is very expensive to start the memcpy kernel on GPU: we therefore only
386
- // use it for large copies.
387
- #ifdef EIGEN_USE_GPU
388
- template <typename Index, bool BlockAccess> struct MemcpyTriggerForSlicing<Index, GpuDevice, BlockAccess> {
389
- EIGEN_DEVICE_FUNC MemcpyTriggerForSlicing(const GpuDevice&) { }
390
- EIGEN_DEVICE_FUNC bool operator ()(Index, Index contiguous) const { return contiguous > 4*1024*1024; }
391
- };
392
- #endif
393
-
394
- // It is very expensive to start the memcpy kernel on GPU: we therefore only
395
- // use it for large copies.
396
- #ifdef EIGEN_USE_SYCL
397
- template <typename Index, bool BlockAccess> struct MemcpyTriggerForSlicing<Index, Eigen::SyclDevice, BlockAccess> {
398
- EIGEN_DEVICE_FUNC MemcpyTriggerForSlicing(const SyclDevice&) { }
399
- EIGEN_DEVICE_FUNC bool operator ()(Index, Index contiguous) const { return contiguous > 4*1024*1024; }
400
- };
401
- #endif
402
-
403
- }
404
-
405
- // Eval as rvalue
406
- template<typename StartIndices, typename Sizes, typename ArgType, typename Device>
407
- struct TensorEvaluator<const TensorSlicingOp<StartIndices, Sizes, ArgType>, Device>
408
- {
409
- typedef TensorSlicingOp<StartIndices, Sizes, ArgType> XprType;
410
- static const int NumDims = internal::array_size<Sizes>::value;
411
-
412
- typedef typename XprType::Index Index;
413
- typedef typename XprType::Scalar Scalar;
414
- typedef typename XprType::CoeffReturnType CoeffReturnType;
415
- typedef typename PacketType<CoeffReturnType, Device>::type PacketReturnType;
416
- typedef Sizes Dimensions;
417
- typedef StorageMemory<CoeffReturnType, Device> Storage;
418
- typedef StorageMemory<typename internal::remove_const<CoeffReturnType>::type, Device> ConstCastStorage;
419
- typedef typename Storage::Type EvaluatorPointerType;
420
-
421
- enum {
422
- // Alignment can't be guaranteed at compile time since it depends on the
423
- // slice offsets and sizes.
424
- IsAligned = false,
425
- PacketAccess = TensorEvaluator<ArgType, Device>::PacketAccess,
426
- BlockAccess = TensorEvaluator<ArgType, Device>::BlockAccess &&
427
- // FIXME: Temporary workaround for bug in slicing of bool tensors.
428
- !internal::is_same<typename internal::remove_const<Scalar>::type, bool>::value,
429
- PreferBlockAccess = true,
430
- Layout = TensorEvaluator<ArgType, Device>::Layout,
431
- CoordAccess = false,
432
- RawAccess = false
433
- };
434
-
435
- typedef typename internal::remove_const<Scalar>::type ScalarNoConst;
436
-
437
- //===- Tensor block evaluation strategy (see TensorBlock.h) -------------===//
438
- typedef internal::TensorBlockDescriptor<NumDims, Index> TensorBlockDesc;
439
- typedef internal::TensorBlockScratchAllocator<Device> TensorBlockScratch;
440
-
441
- // Tensor slicing does not change the block type.
442
- typedef typename TensorEvaluator<const ArgType, Device>::TensorBlock
443
- TensorBlock;
444
- //===--------------------------------------------------------------------===//
445
-
446
- EIGEN_STRONG_INLINE TensorEvaluator(const XprType& op, const Device& device)
447
- : m_impl(op.expression(), device), m_device(device), m_dimensions(op.sizes()), m_offsets(op.startIndices())
448
- {
449
- m_is_identity = true;
450
- for (int i = 0; i < internal::array_size<Dimensions>::value; ++i) {
451
- eigen_assert(m_impl.dimensions()[i] >=
452
- op.sizes()[i] + op.startIndices()[i]);
453
- if (m_impl.dimensions()[i] != op.sizes()[i] ||
454
- op.startIndices()[i] != 0) {
455
- m_is_identity = false;
456
- }
457
- }
458
-
459
- // No strides for scalars.
460
- if (NumDims == 0) return;
461
-
462
- const typename TensorEvaluator<ArgType, Device>::Dimensions& input_dims = m_impl.dimensions();
463
- const Sizes& output_dims = op.sizes();
464
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
465
- m_inputStrides[0] = 1;
466
- for (int i = 1; i < NumDims; ++i) {
467
- m_inputStrides[i] = m_inputStrides[i-1] * input_dims[i-1];
468
- }
469
-
470
- // Don't initialize m_fastOutputStrides[0] since it won't ever be accessed.
471
- m_outputStrides[0] = 1;
472
- for (int i = 1; i < NumDims; ++i) {
473
- m_outputStrides[i] = m_outputStrides[i-1] * output_dims[i-1];
474
- m_fastOutputStrides[i] = internal::TensorIntDivisor<Index>(m_outputStrides[i] > 0 ? m_outputStrides[i] : 1);
475
- }
476
- } else {
477
- m_inputStrides[NumDims-1] = 1;
478
- for (int i = NumDims - 2; i >= 0; --i) {
479
- m_inputStrides[i] = m_inputStrides[i+1] * input_dims[i+1];
480
- }
481
-
482
- // Don't initialize m_fastOutputStrides[NumDims-1] since it won't ever be accessed.
483
- m_outputStrides[NumDims-1] = 1;
484
- for (int i = NumDims - 2; i >= 0; --i) {
485
- m_outputStrides[i] = m_outputStrides[i+1] * output_dims[i+1];
486
- m_fastOutputStrides[i] = internal::TensorIntDivisor<Index>(m_outputStrides[i] > 0 ? m_outputStrides[i] : 1);
487
- }
488
- }
489
- }
490
-
491
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Dimensions& dimensions() const { return m_dimensions; }
492
-
493
- EIGEN_STRONG_INLINE bool evalSubExprsIfNeeded(EvaluatorPointerType data) {
494
- m_impl.evalSubExprsIfNeeded(NULL);
495
- if (!NumTraits<typename internal::remove_const<Scalar>::type>::RequireInitialization
496
- && data && m_impl.data()) {
497
- Index contiguous_values = 1;
498
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
499
- for (int i = 0; i < NumDims; ++i) {
500
- contiguous_values *= dimensions()[i];
501
- if (dimensions()[i] != m_impl.dimensions()[i]) {
502
- break;
503
- }
504
- }
505
- } else {
506
- for (int i = NumDims-1; i >= 0; --i) {
507
- contiguous_values *= dimensions()[i];
508
- if (dimensions()[i] != m_impl.dimensions()[i]) {
509
- break;
510
- }
511
- }
512
- }
513
- // Use memcpy if it's going to be faster than using the regular evaluation.
514
- const MemcpyTriggerForSlicing<Index, Device, BlockAccess> trigger(m_device);
515
- if (trigger(internal::array_prod(dimensions()), contiguous_values)) {
516
- EvaluatorPointerType src = (EvaluatorPointerType)m_impl.data();
517
- for (Index i = 0; i < internal::array_prod(dimensions()); i += contiguous_values) {
518
- Index offset = srcCoeff(i);
519
- m_device.memcpy((void*)(m_device.get(data + i)), m_device.get(src+offset), contiguous_values * sizeof(Scalar));
520
- }
521
- return false;
522
- }
523
- }
524
- return true;
525
- }
526
-
527
- #ifdef EIGEN_USE_THREADS
528
- template <typename EvalSubExprsCallback>
529
- EIGEN_STRONG_INLINE void evalSubExprsIfNeededAsync(
530
- EvaluatorPointerType /*data*/, EvalSubExprsCallback done) {
531
- m_impl.evalSubExprsIfNeededAsync(nullptr, [done](bool) { done(true); });
532
- }
533
- #endif // EIGEN_USE_THREADS
534
-
535
- EIGEN_STRONG_INLINE void cleanup() {
536
- m_impl.cleanup();
537
- }
538
-
539
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE CoeffReturnType coeff(Index index) const
540
- {
541
- if (m_is_identity) {
542
- return m_impl.coeff(index);
543
- } else {
544
- return m_impl.coeff(srcCoeff(index));
545
- }
546
- }
547
-
548
- template<int LoadMode>
549
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE PacketReturnType packet(Index index) const
550
- {
551
- const int packetSize = PacketType<CoeffReturnType, Device>::size;
552
- EIGEN_STATIC_ASSERT((packetSize > 1), YOU_MADE_A_PROGRAMMING_MISTAKE)
553
- eigen_assert(index+packetSize-1 < internal::array_prod(dimensions()));
554
-
555
- if (m_is_identity) {
556
- return m_impl.template packet<LoadMode>(index);
557
- }
558
-
559
- Index inputIndices[] = {0, 0};
560
- Index indices[] = {index, index + packetSize - 1};
561
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
562
- EIGEN_UNROLL_LOOP
563
- for (int i = NumDims - 1; i > 0; --i) {
564
- const Index idx0 = indices[0] / m_fastOutputStrides[i];
565
- const Index idx1 = indices[1] / m_fastOutputStrides[i];
566
- inputIndices[0] += (idx0 + m_offsets[i]) * m_inputStrides[i];
567
- inputIndices[1] += (idx1 + m_offsets[i]) * m_inputStrides[i];
568
- indices[0] -= idx0 * m_outputStrides[i];
569
- indices[1] -= idx1 * m_outputStrides[i];
570
- }
571
- inputIndices[0] += (indices[0] + m_offsets[0]);
572
- inputIndices[1] += (indices[1] + m_offsets[0]);
573
- } else {
574
- EIGEN_UNROLL_LOOP
575
- for (int i = 0; i < NumDims - 1; ++i) {
576
- const Index idx0 = indices[0] / m_fastOutputStrides[i];
577
- const Index idx1 = indices[1] / m_fastOutputStrides[i];
578
- inputIndices[0] += (idx0 + m_offsets[i]) * m_inputStrides[i];
579
- inputIndices[1] += (idx1 + m_offsets[i]) * m_inputStrides[i];
580
- indices[0] -= idx0 * m_outputStrides[i];
581
- indices[1] -= idx1 * m_outputStrides[i];
582
- }
583
- inputIndices[0] += (indices[0] + m_offsets[NumDims-1]);
584
- inputIndices[1] += (indices[1] + m_offsets[NumDims-1]);
585
- }
586
- if (inputIndices[1] - inputIndices[0] == packetSize - 1) {
587
- PacketReturnType rslt = m_impl.template packet<Unaligned>(inputIndices[0]);
588
- return rslt;
589
- }
590
- else {
591
- EIGEN_ALIGN_MAX typename internal::remove_const<CoeffReturnType>::type values[packetSize];
592
- values[0] = m_impl.coeff(inputIndices[0]);
593
- values[packetSize-1] = m_impl.coeff(inputIndices[1]);
594
- EIGEN_UNROLL_LOOP
595
- for (int i = 1; i < packetSize-1; ++i) {
596
- values[i] = coeff(index+i);
597
- }
598
- PacketReturnType rslt = internal::pload<PacketReturnType>(values);
599
- return rslt;
600
- }
601
- }
602
-
603
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorOpCost costPerCoeff(bool vectorized) const {
604
- return m_impl.costPerCoeff(vectorized) + TensorOpCost(0, 0, m_is_identity ? 1 : NumDims);
605
- }
606
-
607
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
608
- internal::TensorBlockResourceRequirements getResourceRequirements() const {
609
- const size_t target_size = m_device.lastLevelCacheSize();
610
- return internal::TensorBlockResourceRequirements::merge(
611
- internal::TensorBlockResourceRequirements::skewed<Scalar>(target_size),
612
- m_impl.getResourceRequirements());
613
- }
614
-
615
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorBlock
616
- block(TensorBlockDesc& desc, TensorBlockScratch& scratch,
617
- bool /*root_of_expr_ast*/ = false) const {
618
- TensorBlockDesc arg_desc = desc.WithOffset(srcCoeff(desc.offset()));
619
- TensorBlock block = m_impl.block(arg_desc, scratch);
620
- if (!arg_desc.HasDestinationBuffer()) desc.DropDestinationBuffer();
621
- return block;
622
- }
623
-
624
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE typename Storage::Type data() const {
625
- typename Storage::Type result = constCast(m_impl.data());
626
- if (result) {
627
- Index offset = 0;
628
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
629
- for (int i = 0; i < NumDims; ++i) {
630
- if (m_dimensions[i] != m_impl.dimensions()[i]) {
631
- offset += m_offsets[i] * m_inputStrides[i];
632
- for (int j = i+1; j < NumDims; ++j) {
633
- if (m_dimensions[j] > 1) {
634
- return NULL;
635
- }
636
- offset += m_offsets[j] * m_inputStrides[j];
637
- }
638
- break;
639
- }
640
- }
641
- } else {
642
- for (int i = NumDims - 1; i >= 0; --i) {
643
- if (m_dimensions[i] != m_impl.dimensions()[i]) {
644
- offset += m_offsets[i] * m_inputStrides[i];
645
- for (int j = i-1; j >= 0; --j) {
646
- if (m_dimensions[j] > 1) {
647
- return NULL;
648
- }
649
- offset += m_offsets[j] * m_inputStrides[j];
650
- }
651
- break;
652
- }
653
- }
654
- }
655
- return result + offset;
656
- }
657
- return NULL;
658
- }
659
- #ifdef EIGEN_USE_SYCL
660
- // binding placeholder accessors to a command group handler for SYCL
661
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void bind(cl::sycl::handler &cgh) const {
662
- m_impl.bind(cgh);
663
- }
664
- #endif
665
-
666
- protected:
667
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Index srcCoeff(Index index) const
668
- {
669
- Index inputIndex = 0;
670
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
671
- EIGEN_UNROLL_LOOP
672
- for (int i = NumDims - 1; i > 0; --i) {
673
- const Index idx = index / m_fastOutputStrides[i];
674
- inputIndex += (idx + m_offsets[i]) * m_inputStrides[i];
675
- index -= idx * m_outputStrides[i];
676
- }
677
- inputIndex += (index + m_offsets[0]);
678
- } else {
679
- EIGEN_UNROLL_LOOP
680
- for (int i = 0; i < NumDims - 1; ++i) {
681
- const Index idx = index / m_fastOutputStrides[i];
682
- inputIndex += (idx + m_offsets[i]) * m_inputStrides[i];
683
- index -= idx * m_outputStrides[i];
684
- }
685
- inputIndex += (index + m_offsets[NumDims-1]);
686
- }
687
- return inputIndex;
688
- }
689
-
690
- array<Index, NumDims> m_outputStrides;
691
- array<internal::TensorIntDivisor<Index>, NumDims> m_fastOutputStrides;
692
- array<Index, NumDims> m_inputStrides;
693
- TensorEvaluator<ArgType, Device> m_impl;
694
- const Device EIGEN_DEVICE_REF m_device;
695
- Dimensions m_dimensions;
696
- bool m_is_identity;
697
- const StartIndices m_offsets;
698
- };
699
-
700
-
701
- // Eval as lvalue
702
- template<typename StartIndices, typename Sizes, typename ArgType, typename Device>
703
- struct TensorEvaluator<TensorSlicingOp<StartIndices, Sizes, ArgType>, Device>
704
- : public TensorEvaluator<const TensorSlicingOp<StartIndices, Sizes, ArgType>, Device>
705
- {
706
- typedef TensorEvaluator<const TensorSlicingOp<StartIndices, Sizes, ArgType>, Device> Base;
707
- typedef TensorSlicingOp<StartIndices, Sizes, ArgType> XprType;
708
- static const int NumDims = internal::array_size<Sizes>::value;
709
-
710
- typedef typename XprType::Index Index;
711
- typedef typename XprType::Scalar Scalar;
712
- typedef typename XprType::CoeffReturnType CoeffReturnType;
713
- typedef typename PacketType<CoeffReturnType, Device>::type PacketReturnType;
714
- typedef Sizes Dimensions;
715
-
716
- enum {
717
- IsAligned = false,
718
- PacketAccess = TensorEvaluator<ArgType, Device>::PacketAccess,
719
- BlockAccess = TensorEvaluator<ArgType, Device>::BlockAccess,
720
- PreferBlockAccess = true,
721
- Layout = TensorEvaluator<ArgType, Device>::Layout,
722
- CoordAccess = false,
723
- RawAccess = (NumDims == 1) & TensorEvaluator<ArgType, Device>::RawAccess
724
- };
725
-
726
- typedef typename internal::remove_const<Scalar>::type ScalarNoConst;
727
-
728
- //===- Tensor block evaluation strategy (see TensorBlock.h) -------------===//
729
- typedef internal::TensorBlockDescriptor<NumDims, Index> TensorBlockDesc;
730
- typedef internal::TensorBlockScratchAllocator<Device> TensorBlockScratch;
731
- //===--------------------------------------------------------------------===//
732
-
733
- EIGEN_STRONG_INLINE TensorEvaluator(const XprType& op, const Device& device)
734
- : Base(op, device)
735
- { }
736
-
737
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE CoeffReturnType& coeffRef(Index index)
738
- {
739
- if (this->m_is_identity) {
740
- return this->m_impl.coeffRef(index);
741
- } else {
742
- return this->m_impl.coeffRef(this->srcCoeff(index));
743
- }
744
- }
745
-
746
- template <int StoreMode> EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
747
- void writePacket(Index index, const PacketReturnType& x)
748
- {
749
- if (this->m_is_identity) {
750
- this->m_impl.template writePacket<StoreMode>(index, x);
751
- return;
752
- }
753
-
754
- const int packetSize = PacketType<CoeffReturnType, Device>::size;
755
- Index inputIndices[] = {0, 0};
756
- Index indices[] = {index, index + packetSize - 1};
757
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
758
- EIGEN_UNROLL_LOOP
759
- for (int i = NumDims - 1; i > 0; --i) {
760
- const Index idx0 = indices[0] / this->m_fastOutputStrides[i];
761
- const Index idx1 = indices[1] / this->m_fastOutputStrides[i];
762
- inputIndices[0] += (idx0 + this->m_offsets[i]) * this->m_inputStrides[i];
763
- inputIndices[1] += (idx1 + this->m_offsets[i]) * this->m_inputStrides[i];
764
- indices[0] -= idx0 * this->m_outputStrides[i];
765
- indices[1] -= idx1 * this->m_outputStrides[i];
766
- }
767
- inputIndices[0] += (indices[0] + this->m_offsets[0]);
768
- inputIndices[1] += (indices[1] + this->m_offsets[0]);
769
- } else {
770
- EIGEN_UNROLL_LOOP
771
- for (int i = 0; i < NumDims - 1; ++i) {
772
- const Index idx0 = indices[0] / this->m_fastOutputStrides[i];
773
- const Index idx1 = indices[1] / this->m_fastOutputStrides[i];
774
- inputIndices[0] += (idx0 + this->m_offsets[i]) * this->m_inputStrides[i];
775
- inputIndices[1] += (idx1 + this->m_offsets[i]) * this->m_inputStrides[i];
776
- indices[0] -= idx0 * this->m_outputStrides[i];
777
- indices[1] -= idx1 * this->m_outputStrides[i];
778
- }
779
- inputIndices[0] += (indices[0] + this->m_offsets[NumDims-1]);
780
- inputIndices[1] += (indices[1] + this->m_offsets[NumDims-1]);
781
- }
782
- if (inputIndices[1] - inputIndices[0] == packetSize - 1) {
783
- this->m_impl.template writePacket<StoreMode>(inputIndices[0], x);
784
- }
785
- else {
786
- EIGEN_ALIGN_MAX CoeffReturnType values[packetSize];
787
- internal::pstore<CoeffReturnType, PacketReturnType>(values, x);
788
- this->m_impl.coeffRef(inputIndices[0]) = values[0];
789
- this->m_impl.coeffRef(inputIndices[1]) = values[packetSize-1];
790
- EIGEN_UNROLL_LOOP
791
- for (int i = 1; i < packetSize-1; ++i) {
792
- this->coeffRef(index+i) = values[i];
793
- }
794
- }
795
- }
796
-
797
- template<typename TensorBlock>
798
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void writeBlock(
799
- const TensorBlockDesc& desc, const TensorBlock& block) {
800
- TensorBlockDesc arg_desc = desc.WithOffset(this->srcCoeff(desc.offset()));
801
- this->m_impl.writeBlock(arg_desc, block);
802
- }
803
- };
804
-
805
- namespace internal {
806
- template<typename StartIndices, typename StopIndices, typename Strides, typename XprType>
807
- struct traits<TensorStridingSlicingOp<StartIndices, StopIndices, Strides, XprType> > : public traits<XprType>
808
- {
809
- typedef typename XprType::Scalar Scalar;
810
- typedef traits<XprType> XprTraits;
811
- typedef typename XprTraits::StorageKind StorageKind;
812
- typedef typename XprTraits::Index Index;
813
- typedef typename XprType::Nested Nested;
814
- typedef typename remove_reference<Nested>::type _Nested;
815
- static const int NumDimensions = array_size<StartIndices>::value;
816
- static const int Layout = XprTraits::Layout;
817
- typedef typename XprTraits::PointerType PointerType;
818
- };
819
-
820
- template<typename StartIndices, typename StopIndices, typename Strides, typename XprType>
821
- struct eval<TensorStridingSlicingOp<StartIndices, StopIndices, Strides, XprType>, Eigen::Dense>
822
- {
823
- typedef const TensorStridingSlicingOp<StartIndices, StopIndices, Strides, XprType>EIGEN_DEVICE_REF type;
824
- };
825
-
826
- template<typename StartIndices, typename StopIndices, typename Strides, typename XprType>
827
- struct nested<TensorStridingSlicingOp<StartIndices, StopIndices, Strides, XprType>, 1, typename eval<TensorStridingSlicingOp<StartIndices, StopIndices, Strides, XprType> >::type>
828
- {
829
- typedef TensorStridingSlicingOp<StartIndices, StopIndices, Strides, XprType> type;
830
- };
831
-
832
- } // end namespace internal
833
-
834
-
835
- template<typename StartIndices, typename StopIndices, typename Strides, typename XprType>
836
- class TensorStridingSlicingOp : public TensorBase<TensorStridingSlicingOp<StartIndices, StopIndices, Strides, XprType> >
837
- {
838
- public:
839
- typedef TensorBase<TensorStridingSlicingOp<StartIndices, StopIndices, Strides, XprType> > Base;
840
- typedef typename internal::traits<TensorStridingSlicingOp>::Scalar Scalar;
841
- typedef typename XprType::CoeffReturnType CoeffReturnType;
842
- typedef typename internal::nested<TensorStridingSlicingOp>::type Nested;
843
- typedef typename internal::traits<TensorStridingSlicingOp>::StorageKind StorageKind;
844
- typedef typename internal::traits<TensorStridingSlicingOp>::Index Index;
845
-
846
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorStridingSlicingOp(
847
- const XprType& expr, const StartIndices& startIndices,
848
- const StopIndices& stopIndices, const Strides& strides)
849
- : m_xpr(expr), m_startIndices(startIndices), m_stopIndices(stopIndices),
850
- m_strides(strides) {}
851
-
852
- EIGEN_DEVICE_FUNC
853
- const StartIndices& startIndices() const { return m_startIndices; }
854
- EIGEN_DEVICE_FUNC
855
- const StartIndices& stopIndices() const { return m_stopIndices; }
856
- EIGEN_DEVICE_FUNC
857
- const StartIndices& strides() const { return m_strides; }
858
-
859
- EIGEN_DEVICE_FUNC
860
- const typename internal::remove_all<typename XprType::Nested>::type&
861
- expression() const { return m_xpr; }
862
-
863
- EIGEN_TENSOR_INHERIT_ASSIGNMENT_OPERATORS(TensorStridingSlicingOp)
864
-
865
- protected:
866
- typename XprType::Nested m_xpr;
867
- const StartIndices m_startIndices;
868
- const StopIndices m_stopIndices;
869
- const Strides m_strides;
870
- };
871
-
872
- // Eval as rvalue
873
- template<typename StartIndices, typename StopIndices, typename Strides, typename ArgType, typename Device>
874
- struct TensorEvaluator<const TensorStridingSlicingOp<StartIndices, StopIndices, Strides, ArgType>, Device>
875
- {
876
- typedef TensorStridingSlicingOp<StartIndices, StopIndices, Strides, ArgType> XprType;
877
- static const int NumDims = internal::array_size<Strides>::value;
878
- typedef typename XprType::Index Index;
879
- typedef typename XprType::Scalar Scalar;
880
- typedef typename XprType::CoeffReturnType CoeffReturnType;
881
- typedef typename PacketType<CoeffReturnType, Device>::type PacketReturnType;
882
- typedef StorageMemory<CoeffReturnType, Device> Storage;
883
- typedef typename Storage::Type EvaluatorPointerType;
884
- typedef Strides Dimensions;
885
-
886
- enum {
887
- // Alignment can't be guaranteed at compile time since it depends on the
888
- // slice offsets and sizes.
889
- IsAligned = false,
890
- PacketAccess = false,
891
- BlockAccess = false,
892
- PreferBlockAccess = TensorEvaluator<ArgType, Device>::PreferBlockAccess,
893
- Layout = TensorEvaluator<ArgType, Device>::Layout,
894
- RawAccess = false
895
- };
896
-
897
- //===- Tensor block evaluation strategy (see TensorBlock.h) -------------===//
898
- typedef internal::TensorBlockNotImplemented TensorBlock;
899
- //===--------------------------------------------------------------------===//
900
-
901
- EIGEN_STRONG_INLINE TensorEvaluator(const XprType& op, const Device& device)
902
- : m_impl(op.expression(), device),
903
- m_device(device),
904
- m_strides(op.strides())
905
- {
906
- // Handle degenerate intervals by gracefully clamping and allowing m_dimensions to be zero
907
- DSizes<Index, NumDims> startIndicesClamped, stopIndicesClamped;
908
- for (ptrdiff_t i = 0; i < internal::array_size<Dimensions>::value; ++i) {
909
- eigen_assert(m_strides[i] != 0 && "0 stride is invalid");
910
- if (m_strides[i] > 0) {
911
- startIndicesClamped[i] =
912
- clamp(op.startIndices()[i], 0, m_impl.dimensions()[i]);
913
- stopIndicesClamped[i] =
914
- clamp(op.stopIndices()[i], 0, m_impl.dimensions()[i]);
915
- } else {
916
- /* implies m_strides[i] < 0 by assert */
917
- startIndicesClamped[i] =
918
- clamp(op.startIndices()[i], -1, m_impl.dimensions()[i] - 1);
919
- stopIndicesClamped[i] =
920
- clamp(op.stopIndices()[i], -1, m_impl.dimensions()[i] - 1);
921
- }
922
- m_startIndices[i] = startIndicesClamped[i];
923
- }
924
-
925
- typedef typename TensorEvaluator<ArgType, Device>::Dimensions InputDimensions;
926
- const InputDimensions& input_dims = m_impl.dimensions();
927
-
928
- // compute output tensor shape
929
- m_is_identity = true;
930
- for (int i = 0; i < NumDims; i++) {
931
- Index interval = stopIndicesClamped[i] - startIndicesClamped[i];
932
- if (interval == 0 || ((interval < 0) != (m_strides[i] < 0))) {
933
- m_dimensions[i] = 0;
934
- } else {
935
- m_dimensions[i] =
936
- (interval / m_strides[i]) + (interval % m_strides[i] != 0 ? 1 : 0);
937
- eigen_assert(m_dimensions[i] >= 0);
938
- }
939
- if (m_strides[i] != 1 || interval != m_impl.dimensions()[i]) {
940
- m_is_identity = false;
941
- }
942
- }
943
-
944
- Strides output_dims = m_dimensions;
945
-
946
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
947
- m_inputStrides[0] = m_strides[0];
948
- m_offsets[0] = startIndicesClamped[0];
949
- Index previousDimProduct = 1;
950
- for (int i = 1; i < NumDims; ++i) {
951
- previousDimProduct *= input_dims[i-1];
952
- m_inputStrides[i] = previousDimProduct * m_strides[i];
953
- m_offsets[i] = startIndicesClamped[i] * previousDimProduct;
954
- }
955
-
956
- // Don't initialize m_fastOutputStrides[0] since it won't ever be accessed.
957
- m_outputStrides[0] = 1;
958
- for (int i = 1; i < NumDims; ++i) {
959
- m_outputStrides[i] = m_outputStrides[i-1] * output_dims[i-1];
960
- m_fastOutputStrides[i] = internal::TensorIntDivisor<Index>(m_outputStrides[i] > 0 ? m_outputStrides[i] : 1);
961
- }
962
- } else {
963
- m_inputStrides[NumDims-1] = m_strides[NumDims-1];
964
- m_offsets[NumDims-1] = startIndicesClamped[NumDims-1];
965
- Index previousDimProduct = 1;
966
- for (int i = NumDims - 2; i >= 0; --i) {
967
- previousDimProduct *= input_dims[i+1];
968
- m_inputStrides[i] = previousDimProduct * m_strides[i];
969
- m_offsets[i] = startIndicesClamped[i] * previousDimProduct;
970
- }
971
-
972
- m_outputStrides[NumDims-1] = 1;
973
- for (int i = NumDims - 2; i >= 0; --i) {
974
- m_outputStrides[i] = m_outputStrides[i+1] * output_dims[i+1];
975
- m_fastOutputStrides[i] = internal::TensorIntDivisor<Index>(m_outputStrides[i] > 0 ? m_outputStrides[i] : 1);
976
- }
977
- }
978
- }
979
-
980
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Dimensions& dimensions() const { return m_dimensions; }
981
-
982
-
983
- EIGEN_STRONG_INLINE bool evalSubExprsIfNeeded(EvaluatorPointerType) {
984
- m_impl.evalSubExprsIfNeeded(NULL);
985
- return true;
986
- }
987
-
988
- EIGEN_STRONG_INLINE void cleanup() {
989
- m_impl.cleanup();
990
- }
991
-
992
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE CoeffReturnType coeff(Index index) const
993
- {
994
- if (m_is_identity) {
995
- return m_impl.coeff(index);
996
- } else {
997
- return m_impl.coeff(srcCoeff(index));
998
- }
999
- }
1000
-
1001
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorOpCost costPerCoeff(bool vectorized) const {
1002
- return m_impl.costPerCoeff(vectorized) + TensorOpCost(0, 0, m_is_identity ? 1 : NumDims);
1003
- }
1004
-
1005
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE typename Storage::Type data() const {
1006
- return NULL;
1007
- }
1008
- #ifdef EIGEN_USE_SYCL
1009
- // binding placeholder accessors to a command group handler for SYCL
1010
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void bind(cl::sycl::handler &cgh) const {
1011
- m_impl.bind(cgh);
1012
- }
1013
- #endif
1014
- protected:
1015
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Index srcCoeff(Index index) const
1016
- {
1017
- Index inputIndex = 0;
1018
- if (static_cast<int>(Layout) == static_cast<int>(ColMajor)) {
1019
- EIGEN_UNROLL_LOOP
1020
- for (int i = NumDims - 1; i >= 0; --i) {
1021
- const Index idx = index / m_fastOutputStrides[i];
1022
- inputIndex += idx * m_inputStrides[i] + m_offsets[i];
1023
- index -= idx * m_outputStrides[i];
1024
- }
1025
- } else {
1026
- EIGEN_UNROLL_LOOP
1027
- for (int i = 0; i < NumDims; ++i) {
1028
- const Index idx = index / m_fastOutputStrides[i];
1029
- inputIndex += idx * m_inputStrides[i] + m_offsets[i];
1030
- index -= idx * m_outputStrides[i];
1031
- }
1032
- }
1033
- return inputIndex;
1034
- }
1035
-
1036
- static EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Index clamp(Index value, Index min, Index max) {
1037
- #ifndef SYCL_DEVICE_ONLY
1038
- return numext::maxi(min, numext::mini(max,value));
1039
- #else
1040
- return cl::sycl::clamp(value, min, max);
1041
- #endif
1042
- }
1043
-
1044
- array<Index, NumDims> m_outputStrides;
1045
- array<internal::TensorIntDivisor<Index>, NumDims> m_fastOutputStrides;
1046
- array<Index, NumDims> m_inputStrides;
1047
- bool m_is_identity;
1048
- TensorEvaluator<ArgType, Device> m_impl;
1049
- const Device EIGEN_DEVICE_REF m_device;
1050
- DSizes<Index, NumDims> m_startIndices; // clamped startIndices
1051
- DSizes<Index, NumDims> m_dimensions;
1052
- DSizes<Index, NumDims> m_offsets; // offset in a flattened shape
1053
- const Strides m_strides;
1054
- };
1055
-
1056
- // Eval as lvalue
1057
- template<typename StartIndices, typename StopIndices, typename Strides, typename ArgType, typename Device>
1058
- struct TensorEvaluator<TensorStridingSlicingOp<StartIndices, StopIndices, Strides, ArgType>, Device>
1059
- : public TensorEvaluator<const TensorStridingSlicingOp<StartIndices, StopIndices, Strides, ArgType>, Device>
1060
- {
1061
- typedef TensorEvaluator<const TensorStridingSlicingOp<StartIndices, StopIndices, Strides, ArgType>, Device> Base;
1062
- typedef TensorStridingSlicingOp<StartIndices, StopIndices, Strides, ArgType> XprType;
1063
- static const int NumDims = internal::array_size<Strides>::value;
1064
-
1065
- enum {
1066
- IsAligned = false,
1067
- PacketAccess = false,
1068
- BlockAccess = false,
1069
- PreferBlockAccess = TensorEvaluator<ArgType, Device>::PreferBlockAccess,
1070
- Layout = TensorEvaluator<ArgType, Device>::Layout,
1071
- CoordAccess = TensorEvaluator<ArgType, Device>::CoordAccess,
1072
- RawAccess = false
1073
- };
1074
-
1075
- //===- Tensor block evaluation strategy (see TensorBlock.h) -------------===//
1076
- typedef internal::TensorBlockNotImplemented TensorBlock;
1077
- //===--------------------------------------------------------------------===//
1078
-
1079
- EIGEN_STRONG_INLINE TensorEvaluator(const XprType& op, const Device& device)
1080
- : Base(op, device)
1081
- { }
1082
-
1083
- typedef typename XprType::Index Index;
1084
- typedef typename XprType::Scalar Scalar;
1085
- typedef typename XprType::CoeffReturnType CoeffReturnType;
1086
- typedef typename PacketType<CoeffReturnType, Device>::type PacketReturnType;
1087
- typedef Strides Dimensions;
1088
-
1089
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE CoeffReturnType& coeffRef(Index index)
1090
- {
1091
- if (this->m_is_identity) {
1092
- return this->m_impl.coeffRef(index);
1093
- } else {
1094
- return this->m_impl.coeffRef(this->srcCoeff(index));
1095
- }
1096
- }
1097
- };
1098
-
1099
-
1100
- } // end namespace Eigen
1101
-
1102
- #endif // EIGEN_CXX11_TENSOR_TENSOR_MORPHING_H