sequenzo 0.1.17__cp311-cp311-macosx_10_9_universal2.whl → 0.1.19__cp311-cp311-macosx_10_9_universal2.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.


This version of sequenzo might be problematic. Click here for more details.

Files changed (423) hide show
  1. sequenzo/__init__.py +64 -8
  2. sequenzo/big_data/clara/clara.py +1 -1
  3. sequenzo/big_data/clara/utils/get_weighted_diss.c +155 -155
  4. sequenzo/big_data/clara/utils/get_weighted_diss.cpython-311-darwin.so +0 -0
  5. sequenzo/clustering/KMedoids.py +39 -0
  6. sequenzo/clustering/hierarchical_clustering.py +304 -8
  7. sequenzo/define_sequence_data.py +44 -3
  8. sequenzo/dissimilarity_measures/c_code.cpython-311-darwin.so +0 -0
  9. sequenzo/dissimilarity_measures/get_distance_matrix.py +1 -2
  10. sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +1 -1
  11. sequenzo/dissimilarity_measures/src/DHDdistance.cpp +13 -37
  12. sequenzo/dissimilarity_measures/src/LCPdistance.cpp +13 -37
  13. sequenzo/dissimilarity_measures/src/OMdistance.cpp +12 -47
  14. sequenzo/dissimilarity_measures/src/OMspellDistance.cpp +103 -67
  15. sequenzo/dissimilarity_measures/src/dp_utils.h +160 -0
  16. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_arithmetic.hpp +41 -16
  17. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_complex.hpp +4 -0
  18. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_details.hpp +7 -0
  19. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_logical.hpp +10 -0
  20. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_math.hpp +127 -43
  21. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_memory.hpp +30 -2
  22. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_swizzle.hpp +174 -0
  23. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_trigo.hpp +14 -5
  24. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx.hpp +111 -54
  25. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx2.hpp +131 -9
  26. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512bw.hpp +11 -113
  27. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512dq.hpp +39 -7
  28. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512f.hpp +336 -30
  29. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi.hpp +9 -37
  30. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi2.hpp +58 -0
  31. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common.hpp +1 -0
  32. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common_fwd.hpp +35 -2
  33. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_constants.hpp +3 -1
  34. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_emulated.hpp +17 -0
  35. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_avx.hpp +13 -0
  36. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_sse.hpp +18 -0
  37. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma4.hpp +13 -0
  38. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_isa.hpp +8 -0
  39. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon.hpp +363 -34
  40. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon64.hpp +7 -0
  41. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_rvv.hpp +13 -0
  42. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_scalar.hpp +41 -4
  43. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse2.hpp +252 -16
  44. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse3.hpp +9 -0
  45. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_ssse3.hpp +12 -1
  46. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sve.hpp +7 -0
  47. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_vsx.hpp +892 -0
  48. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_wasm.hpp +78 -1
  49. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_arch.hpp +3 -1
  50. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_config.hpp +13 -2
  51. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_cpuid.hpp +5 -0
  52. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_inline.hpp +5 -1
  53. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_all_registers.hpp +2 -0
  54. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_api.hpp +64 -1
  55. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_batch.hpp +36 -0
  56. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_rvv_register.hpp +40 -31
  57. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_traits.hpp +8 -0
  58. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_vsx_register.hpp +77 -0
  59. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/xsimd.hpp +6 -0
  60. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +155 -155
  61. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cpython-311-darwin.so +0 -0
  62. sequenzo/dissimilarity_measures/utils/seqconc.c +155 -155
  63. sequenzo/dissimilarity_measures/utils/seqconc.cpython-311-darwin.so +0 -0
  64. sequenzo/dissimilarity_measures/utils/seqdss.c +155 -155
  65. sequenzo/dissimilarity_measures/utils/seqdss.cpython-311-darwin.so +0 -0
  66. sequenzo/dissimilarity_measures/utils/seqdur.c +155 -155
  67. sequenzo/dissimilarity_measures/utils/seqdur.cpython-311-darwin.so +0 -0
  68. sequenzo/dissimilarity_measures/utils/seqlength.c +155 -155
  69. sequenzo/dissimilarity_measures/utils/seqlength.cpython-311-darwin.so +0 -0
  70. sequenzo/multidomain/cat.py +0 -53
  71. sequenzo/multidomain/idcd.py +0 -1
  72. sequenzo/openmp_setup.py +233 -0
  73. sequenzo/sequence_characteristics/__init__.py +4 -0
  74. sequenzo/sequence_characteristics/complexity_index.py +17 -57
  75. sequenzo/sequence_characteristics/overall_cross_sectional_entropy.py +177 -111
  76. sequenzo/sequence_characteristics/plot_characteristics.py +30 -11
  77. sequenzo/sequence_characteristics/simple_characteristics.py +1 -0
  78. sequenzo/sequence_characteristics/state_frequencies_and_entropy_per_sequence.py +9 -3
  79. sequenzo/sequence_characteristics/turbulence.py +47 -67
  80. sequenzo/sequence_characteristics/variance_of_spell_durations.py +19 -9
  81. sequenzo/sequence_characteristics/within_sequence_entropy.py +5 -58
  82. sequenzo/visualization/plot_sequence_index.py +58 -35
  83. sequenzo/visualization/plot_state_distribution.py +57 -36
  84. sequenzo/visualization/plot_transition_matrix.py +21 -22
  85. sequenzo/with_event_history_analysis/__init__.py +35 -0
  86. sequenzo/with_event_history_analysis/sequence_analysis_multi_state_model.py +850 -0
  87. sequenzo/with_event_history_analysis/sequence_history_analysis.py +283 -0
  88. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/METADATA +48 -14
  89. sequenzo-0.1.19.dist-info/RECORD +215 -0
  90. sequenzo/dissimilarity_measures/setup.py +0 -35
  91. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
  92. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
  93. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
  94. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
  95. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
  96. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
  97. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
  98. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
  99. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
  100. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
  101. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
  102. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
  103. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
  104. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
  105. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
  106. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
  107. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
  108. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
  109. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
  110. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
  111. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
  112. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
  113. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
  114. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
  115. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
  116. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
  117. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
  118. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
  119. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
  120. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
  121. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
  122. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
  123. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
  124. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
  125. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
  126. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
  127. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
  128. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
  129. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
  130. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
  131. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
  132. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
  133. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
  134. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
  135. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
  136. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
  137. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
  138. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
  139. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
  140. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
  141. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
  142. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
  143. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
  144. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
  145. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
  146. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
  147. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
  148. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
  149. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
  150. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
  151. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
  152. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
  153. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
  154. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
  155. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
  156. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
  157. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
  158. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
  159. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
  160. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
  161. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
  162. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
  163. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
  164. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
  165. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
  166. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
  167. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
  168. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
  169. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
  170. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
  171. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
  172. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
  173. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
  174. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
  175. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
  176. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
  177. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
  178. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
  179. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
  180. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
  181. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
  182. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
  183. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
  184. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
  185. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
  186. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
  187. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
  188. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
  189. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
  190. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
  191. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
  192. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
  193. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
  194. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
  195. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
  196. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
  197. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
  198. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
  199. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +0 -181
  200. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +0 -179
  201. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +0 -107
  202. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +0 -280
  203. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +0 -126
  204. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +0 -130
  205. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +0 -223
  206. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +0 -258
  207. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +0 -137
  208. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +0 -136
  209. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_relax_snode.h +0 -83
  210. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseQR/SparseQR.h +0 -758
  211. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdDeque.h +0 -116
  212. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdList.h +0 -106
  213. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/StdVector.h +0 -131
  214. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/StlSupport/details.h +0 -84
  215. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SuperLUSupport/SuperLUSupport.h +0 -1025
  216. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/UmfPackSupport/UmfPackSupport.h +0 -642
  217. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Image.h +0 -82
  218. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/Kernel.h +0 -79
  219. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/RealSvd2x2.h +0 -55
  220. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/blas.h +0 -440
  221. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapack.h +0 -152
  222. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke.h +0 -16292
  223. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/misc/lapacke_mangling.h +0 -17
  224. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h +0 -358
  225. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h +0 -696
  226. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/BlockMethods.h +0 -1442
  227. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h +0 -115
  228. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h +0 -177
  229. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/IndexedViewMethods.h +0 -262
  230. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h +0 -152
  231. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h +0 -95
  232. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/plugins/ReshapedMethods.h +0 -149
  233. sequenzo/dissimilarity_measures/src/eigen/blas/BandTriangularSolver.h +0 -97
  234. sequenzo/dissimilarity_measures/src/eigen/blas/GeneralRank1Update.h +0 -44
  235. sequenzo/dissimilarity_measures/src/eigen/blas/PackedSelfadjointProduct.h +0 -53
  236. sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularMatrixVector.h +0 -79
  237. sequenzo/dissimilarity_measures/src/eigen/blas/PackedTriangularSolverVector.h +0 -88
  238. sequenzo/dissimilarity_measures/src/eigen/blas/Rank2Update.h +0 -57
  239. sequenzo/dissimilarity_measures/src/eigen/blas/common.h +0 -175
  240. sequenzo/dissimilarity_measures/src/eigen/blas/f2c/datatypes.h +0 -24
  241. sequenzo/dissimilarity_measures/src/eigen/blas/level1_cplx_impl.h +0 -155
  242. sequenzo/dissimilarity_measures/src/eigen/blas/level1_impl.h +0 -144
  243. sequenzo/dissimilarity_measures/src/eigen/blas/level1_real_impl.h +0 -122
  244. sequenzo/dissimilarity_measures/src/eigen/blas/level2_cplx_impl.h +0 -360
  245. sequenzo/dissimilarity_measures/src/eigen/blas/level2_impl.h +0 -553
  246. sequenzo/dissimilarity_measures/src/eigen/blas/level2_real_impl.h +0 -306
  247. sequenzo/dissimilarity_measures/src/eigen/blas/level3_impl.h +0 -702
  248. sequenzo/dissimilarity_measures/src/eigen/debug/gdb/__init__.py +0 -1
  249. sequenzo/dissimilarity_measures/src/eigen/debug/gdb/printers.py +0 -314
  250. sequenzo/dissimilarity_measures/src/eigen/lapack/lapack_common.h +0 -29
  251. sequenzo/dissimilarity_measures/src/eigen/scripts/relicense.py +0 -69
  252. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/Tensor.h +0 -554
  253. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorArgMax.h +0 -329
  254. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorAssign.h +0 -247
  255. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBase.h +0 -1176
  256. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBlock.h +0 -1559
  257. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorBroadcasting.h +0 -1093
  258. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorChipping.h +0 -518
  259. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConcatenation.h +0 -377
  260. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContraction.h +0 -1023
  261. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionBlocking.h +0 -73
  262. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionCuda.h +0 -6
  263. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionGpu.h +0 -1413
  264. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionMapper.h +0 -575
  265. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionSycl.h +0 -1650
  266. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorContractionThreadPool.h +0 -1679
  267. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConversion.h +0 -456
  268. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConvolution.h +0 -1132
  269. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorConvolutionSycl.h +0 -544
  270. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorCostModel.h +0 -214
  271. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorCustomOp.h +0 -347
  272. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDevice.h +0 -137
  273. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceCuda.h +0 -6
  274. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceDefault.h +0 -104
  275. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceGpu.h +0 -389
  276. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceSycl.h +0 -1048
  277. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDeviceThreadPool.h +0 -409
  278. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDimensionList.h +0 -236
  279. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorDimensions.h +0 -490
  280. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorEvalTo.h +0 -236
  281. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorEvaluator.h +0 -983
  282. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorExecutor.h +0 -703
  283. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorExpr.h +0 -388
  284. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFFT.h +0 -669
  285. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFixedSize.h +0 -379
  286. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorForcedEval.h +0 -237
  287. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorForwardDeclarations.h +0 -191
  288. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorFunctors.h +0 -488
  289. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGenerator.h +0 -302
  290. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGlobalFunctions.h +0 -33
  291. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGpuHipCudaDefines.h +0 -99
  292. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorGpuHipCudaUndefines.h +0 -44
  293. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIO.h +0 -79
  294. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorImagePatch.h +0 -603
  295. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIndexList.h +0 -738
  296. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorInflation.h +0 -247
  297. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorInitializer.h +0 -82
  298. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorIntDiv.h +0 -263
  299. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorLayoutSwap.h +0 -216
  300. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMacros.h +0 -98
  301. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMap.h +0 -327
  302. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMeta.h +0 -311
  303. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorMorphing.h +0 -1102
  304. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorPadding.h +0 -708
  305. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorPatch.h +0 -291
  306. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorRandom.h +0 -322
  307. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReduction.h +0 -998
  308. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionCuda.h +0 -6
  309. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionGpu.h +0 -966
  310. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReductionSycl.h +0 -582
  311. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorRef.h +0 -454
  312. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorReverse.h +0 -465
  313. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorScan.h +0 -528
  314. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorScanSycl.h +0 -513
  315. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorShuffling.h +0 -471
  316. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorStorage.h +0 -161
  317. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorStriding.h +0 -346
  318. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorTrace.h +0 -303
  319. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorTraits.h +0 -264
  320. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorUInt128.h +0 -249
  321. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/Tensor/TensorVolumePatch.h +0 -629
  322. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/DynamicSymmetry.h +0 -293
  323. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/StaticSymmetry.h +0 -236
  324. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/Symmetry.h +0 -338
  325. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/TensorSymmetry/util/TemplateGroupTheory.h +0 -669
  326. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/Barrier.h +0 -67
  327. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/EventCount.h +0 -249
  328. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/NonBlockingThreadPool.h +0 -486
  329. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/RunQueue.h +0 -236
  330. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadCancel.h +0 -23
  331. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadEnvironment.h +0 -40
  332. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadLocal.h +0 -301
  333. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadPoolInterface.h +0 -48
  334. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/ThreadPool/ThreadYield.h +0 -20
  335. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/CXX11Meta.h +0 -537
  336. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/CXX11Workarounds.h +0 -88
  337. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/EmulateArray.h +0 -261
  338. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/CXX11/src/util/MaxSizeVector.h +0 -158
  339. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffJacobian.h +0 -108
  340. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffScalar.h +0 -730
  341. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/AutoDiff/AutoDiffVector.h +0 -220
  342. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/BVH/BVAlgorithms.h +0 -293
  343. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/BVH/KdBVH.h +0 -223
  344. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Eigenvalues/ArpackSelfAdjointEigenSolver.h +0 -790
  345. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/EulerAngles/EulerAngles.h +0 -355
  346. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/EulerAngles/EulerSystem.h +0 -305
  347. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/FFT/ei_fftw_impl.h +0 -261
  348. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/FFT/ei_kissfft_impl.h +0 -449
  349. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h +0 -187
  350. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/DGMRES.h +0 -511
  351. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/GMRES.h +0 -335
  352. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IDRS.h +0 -436
  353. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IncompleteLU.h +0 -90
  354. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/IterationController.h +0 -154
  355. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/MINRES.h +0 -267
  356. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/IterativeSolvers/Scaling.h +0 -193
  357. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h +0 -305
  358. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMcovar.h +0 -84
  359. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMonestep.h +0 -202
  360. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMpar.h +0 -160
  361. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LMqrsolv.h +0 -188
  362. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/LevenbergMarquardt/LevenbergMarquardt.h +0 -396
  363. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixExponential.h +0 -441
  364. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixFunction.h +0 -569
  365. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixLogarithm.h +0 -373
  366. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixPower.h +0 -705
  367. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/MatrixSquareRoot.h +0 -368
  368. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MatrixFunctions/StemFunction.h +0 -117
  369. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/MoreVectorization/MathFunctions.h +0 -95
  370. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/HybridNonLinearSolver.h +0 -601
  371. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/LevenbergMarquardt.h +0 -657
  372. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/chkder.h +0 -66
  373. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/covar.h +0 -70
  374. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/dogleg.h +0 -107
  375. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/fdjac1.h +0 -79
  376. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/lmpar.h +0 -298
  377. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/qrsolv.h +0 -91
  378. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1mpyq.h +0 -30
  379. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/r1updt.h +0 -99
  380. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NonLinearOptimization/rwupdt.h +0 -49
  381. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/NumericalDiff/NumericalDiff.h +0 -130
  382. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/Companion.h +0 -280
  383. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialSolver.h +0 -428
  384. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Polynomials/PolynomialUtils.h +0 -143
  385. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineInplaceLU.h +0 -352
  386. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrix.h +0 -862
  387. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineMatrixBase.h +0 -212
  388. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineProduct.h +0 -295
  389. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineStorage.h +0 -259
  390. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Skyline/SkylineUtil.h +0 -89
  391. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockOfDynamicSparseMatrix.h +0 -122
  392. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/BlockSparseMatrix.h +0 -1079
  393. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/DynamicSparseMatrix.h +0 -404
  394. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MarketIO.h +0 -282
  395. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/MatrixMarketIterator.h +0 -247
  396. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SparseExtra/RandomSetter.h +0 -349
  397. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsArrayAPI.h +0 -286
  398. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsBFloat16.h +0 -68
  399. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsFunctors.h +0 -357
  400. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsHalf.h +0 -66
  401. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsImpl.h +0 -1959
  402. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/BesselFunctionsPacketMath.h +0 -118
  403. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/HipVectorCompatibility.h +0 -67
  404. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsArrayAPI.h +0 -167
  405. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsBFloat16.h +0 -58
  406. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsFunctors.h +0 -330
  407. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsHalf.h +0 -58
  408. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsImpl.h +0 -2045
  409. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsPacketMath.h +0 -79
  410. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/BesselFunctions.h +0 -46
  411. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/SpecialFunctions.h +0 -16
  412. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/BesselFunctions.h +0 -46
  413. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/SpecialFunctions.h +0 -16
  414. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/GPU/SpecialFunctions.h +0 -369
  415. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/BesselFunctions.h +0 -54
  416. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/SpecialFunctions.h +0 -34
  417. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/Spline.h +0 -507
  418. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFitting.h +0 -431
  419. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFwd.h +0 -93
  420. sequenzo-0.1.17.dist-info/RECORD +0 -537
  421. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/WHEEL +0 -0
  422. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/licenses/LICENSE +0 -0
  423. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/top_level.txt +0 -0
@@ -1,738 +0,0 @@
1
- // This file is part of Eigen, a lightweight C++ template library
2
- // for linear algebra.
3
- //
4
- // Copyright (C) 2014 Benoit Steiner <benoit.steiner.goog@gmail.com>
5
- //
6
- // This Source Code Form is subject to the terms of the Mozilla
7
- // Public License v. 2.0. If a copy of the MPL was not distributed
8
- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
-
10
- #ifndef EIGEN_CXX11_TENSOR_TENSOR_INDEX_LIST_H
11
- #define EIGEN_CXX11_TENSOR_TENSOR_INDEX_LIST_H
12
-
13
-
14
- #if EIGEN_HAS_CONSTEXPR && EIGEN_HAS_VARIADIC_TEMPLATES
15
-
16
- #define EIGEN_HAS_INDEX_LIST
17
-
18
- namespace Eigen {
19
-
20
- /** \internal
21
- *
22
- * \class TensorIndexList
23
- * \ingroup CXX11_Tensor_Module
24
- *
25
- * \brief Set of classes used to encode a set of Tensor dimensions/indices.
26
- *
27
- * The indices in the list can be known at compile time or at runtime. A mix
28
- * of static and dynamic indices can also be provided if needed. The tensor
29
- * code will attempt to take advantage of the indices that are known at
30
- * compile time to optimize the code it generates.
31
- *
32
- * This functionality requires a c++11 compliant compiler. If your compiler
33
- * is older you need to use arrays of indices instead.
34
- *
35
- * Several examples are provided in the cxx11_tensor_index_list.cpp file.
36
- *
37
- * \sa Tensor
38
- */
39
-
40
- template <Index n>
41
- struct type2index {
42
- static const Index value = n;
43
- EIGEN_DEVICE_FUNC constexpr operator Index() const { return n; }
44
- EIGEN_DEVICE_FUNC void set(Index val) {
45
- eigen_assert(val == n);
46
- }
47
- };
48
-
49
- // This can be used with IndexPairList to get compile-time constant pairs,
50
- // such as IndexPairList<type2indexpair<1,2>, type2indexpair<3,4>>().
51
- template <Index f, Index s>
52
- struct type2indexpair {
53
- static const Index first = f;
54
- static const Index second = s;
55
-
56
- constexpr EIGEN_DEVICE_FUNC operator IndexPair<Index>() const {
57
- return IndexPair<Index>(f, s);
58
- }
59
-
60
- EIGEN_DEVICE_FUNC void set(const IndexPair<Index>& val) {
61
- eigen_assert(val.first == f);
62
- eigen_assert(val.second == s);
63
- }
64
- };
65
-
66
-
67
- template<Index n> struct NumTraits<type2index<n> >
68
- {
69
- typedef Index Real;
70
- enum {
71
- IsComplex = 0,
72
- RequireInitialization = false,
73
- ReadCost = 1,
74
- AddCost = 1,
75
- MulCost = 1
76
- };
77
-
78
- EIGEN_DEVICE_FUNC static EIGEN_CONSTEXPR EIGEN_STRONG_INLINE Real epsilon() { return 0; }
79
- EIGEN_DEVICE_FUNC static EIGEN_CONSTEXPR EIGEN_STRONG_INLINE Real dummy_precision() { return 0; }
80
- EIGEN_DEVICE_FUNC static EIGEN_CONSTEXPR EIGEN_STRONG_INLINE Real highest() { return n; }
81
- EIGEN_DEVICE_FUNC static EIGEN_CONSTEXPR EIGEN_STRONG_INLINE Real lowest() { return n; }
82
- };
83
-
84
- namespace internal {
85
- template <typename T>
86
- EIGEN_DEVICE_FUNC void update_value(T& val, Index new_val) {
87
- val = internal::convert_index<T>(new_val);
88
- }
89
- template <Index n>
90
- EIGEN_DEVICE_FUNC void update_value(type2index<n>& val, Index new_val) {
91
- val.set(new_val);
92
- }
93
-
94
- template <typename T>
95
- EIGEN_DEVICE_FUNC void update_value(T& val, IndexPair<Index> new_val) {
96
- val = new_val;
97
- }
98
- template <Index f, Index s>
99
- EIGEN_DEVICE_FUNC void update_value(type2indexpair<f, s>& val, IndexPair<Index> new_val) {
100
- val.set(new_val);
101
- }
102
-
103
-
104
- template <typename T>
105
- struct is_compile_time_constant {
106
- static constexpr bool value = false;
107
- };
108
-
109
- template <Index idx>
110
- struct is_compile_time_constant<type2index<idx> > {
111
- static constexpr bool value = true;
112
- };
113
- template <Index idx>
114
- struct is_compile_time_constant<const type2index<idx> > {
115
- static constexpr bool value = true;
116
- };
117
- template <Index idx>
118
- struct is_compile_time_constant<type2index<idx>& > {
119
- static constexpr bool value = true;
120
- };
121
- template <Index idx>
122
- struct is_compile_time_constant<const type2index<idx>& > {
123
- static constexpr bool value = true;
124
- };
125
-
126
- template <Index f, Index s>
127
- struct is_compile_time_constant<type2indexpair<f, s> > {
128
- static constexpr bool value = true;
129
- };
130
- template <Index f, Index s>
131
- struct is_compile_time_constant<const type2indexpair<f, s> > {
132
- static constexpr bool value = true;
133
- };
134
- template <Index f, Index s>
135
- struct is_compile_time_constant<type2indexpair<f, s>& > {
136
- static constexpr bool value = true;
137
- };
138
- template <Index f, Index s>
139
- struct is_compile_time_constant<const type2indexpair<f, s>& > {
140
- static constexpr bool value = true;
141
- };
142
-
143
-
144
- template<typename... T>
145
- struct IndexTuple;
146
-
147
- template<typename T, typename... O>
148
- struct IndexTuple<T, O...> {
149
- EIGEN_DEVICE_FUNC constexpr IndexTuple() : head(), others() { }
150
- EIGEN_DEVICE_FUNC constexpr IndexTuple(const T& v, const O... o) : head(v), others(o...) { }
151
-
152
- constexpr static int count = 1 + sizeof...(O);
153
- T head;
154
- IndexTuple<O...> others;
155
- typedef T Head;
156
- typedef IndexTuple<O...> Other;
157
- };
158
-
159
- template<typename T>
160
- struct IndexTuple<T> {
161
- EIGEN_DEVICE_FUNC constexpr IndexTuple() : head() { }
162
- EIGEN_DEVICE_FUNC constexpr IndexTuple(const T& v) : head(v) { }
163
-
164
- constexpr static int count = 1;
165
- T head;
166
- typedef T Head;
167
- };
168
-
169
-
170
- template<int N, typename... T>
171
- struct IndexTupleExtractor;
172
-
173
- template<int N, typename T, typename... O>
174
- struct IndexTupleExtractor<N, T, O...> {
175
-
176
- typedef typename IndexTupleExtractor<N-1, O...>::ValType ValType;
177
-
178
- EIGEN_DEVICE_FUNC static constexpr ValType& get_val(IndexTuple<T, O...>& val) {
179
- return IndexTupleExtractor<N-1, O...>::get_val(val.others);
180
- }
181
-
182
- EIGEN_DEVICE_FUNC static constexpr const ValType& get_val(const IndexTuple<T, O...>& val) {
183
- return IndexTupleExtractor<N-1, O...>::get_val(val.others);
184
- }
185
- template <typename V>
186
- EIGEN_DEVICE_FUNC static void set_val(IndexTuple<T, O...>& val, V& new_val) {
187
- IndexTupleExtractor<N-1, O...>::set_val(val.others, new_val);
188
- }
189
-
190
- };
191
-
192
- template<typename T, typename... O>
193
- struct IndexTupleExtractor<0, T, O...> {
194
-
195
- typedef T ValType;
196
-
197
- EIGEN_DEVICE_FUNC static constexpr ValType& get_val(IndexTuple<T, O...>& val) {
198
- return val.head;
199
- }
200
- EIGEN_DEVICE_FUNC static constexpr const ValType& get_val(const IndexTuple<T, O...>& val) {
201
- return val.head;
202
- }
203
- template <typename V>
204
- EIGEN_DEVICE_FUNC static void set_val(IndexTuple<T, O...>& val, V& new_val) {
205
- val.head = new_val;
206
- }
207
- };
208
-
209
-
210
-
211
- template <int N, typename T, typename... O>
212
- EIGEN_DEVICE_FUNC constexpr typename IndexTupleExtractor<N, T, O...>::ValType& array_get(IndexTuple<T, O...>& tuple) {
213
- return IndexTupleExtractor<N, T, O...>::get_val(tuple);
214
- }
215
- template <int N, typename T, typename... O>
216
- EIGEN_DEVICE_FUNC constexpr const typename IndexTupleExtractor<N, T, O...>::ValType& array_get(const IndexTuple<T, O...>& tuple) {
217
- return IndexTupleExtractor<N, T, O...>::get_val(tuple);
218
- }
219
- template <typename T, typename... O>
220
- struct array_size<IndexTuple<T, O...> > {
221
- static const size_t value = IndexTuple<T, O...>::count;
222
- };
223
- template <typename T, typename... O>
224
- struct array_size<const IndexTuple<T, O...> > {
225
- static const size_t value = IndexTuple<T, O...>::count;
226
- };
227
-
228
-
229
-
230
-
231
- template <Index Idx, typename ValueT>
232
- struct tuple_coeff {
233
- template <typename... T>
234
- EIGEN_DEVICE_FUNC static constexpr ValueT get(const Index i, const IndexTuple<T...>& t) {
235
- // return array_get<Idx>(t) * (i == Idx) + tuple_coeff<Idx-1>::get(i, t) * (i != Idx);
236
- return (i == Idx ? array_get<Idx>(t) : tuple_coeff<Idx-1, ValueT>::get(i, t));
237
- }
238
- template <typename... T>
239
- EIGEN_DEVICE_FUNC static void set(const Index i, IndexTuple<T...>& t, const ValueT& value) {
240
- if (i == Idx) {
241
- update_value(array_get<Idx>(t), value);
242
- } else {
243
- tuple_coeff<Idx-1, ValueT>::set(i, t, value);
244
- }
245
- }
246
-
247
- template <typename... T>
248
- EIGEN_DEVICE_FUNC static constexpr bool value_known_statically(const Index i, const IndexTuple<T...>& t) {
249
- return ((i == Idx) & is_compile_time_constant<typename IndexTupleExtractor<Idx, T...>::ValType>::value) ||
250
- tuple_coeff<Idx-1, ValueT>::value_known_statically(i, t);
251
- }
252
-
253
- template <typename... T>
254
- EIGEN_DEVICE_FUNC static constexpr bool values_up_to_known_statically(const IndexTuple<T...>& t) {
255
- return is_compile_time_constant<typename IndexTupleExtractor<Idx, T...>::ValType>::value &&
256
- tuple_coeff<Idx-1, ValueT>::values_up_to_known_statically(t);
257
- }
258
-
259
- template <typename... T>
260
- EIGEN_DEVICE_FUNC static constexpr bool values_up_to_statically_known_to_increase(const IndexTuple<T...>& t) {
261
- return is_compile_time_constant<typename IndexTupleExtractor<Idx, T...>::ValType>::value &&
262
- is_compile_time_constant<typename IndexTupleExtractor<Idx, T...>::ValType>::value &&
263
- array_get<Idx>(t) > array_get<Idx-1>(t) &&
264
- tuple_coeff<Idx-1, ValueT>::values_up_to_statically_known_to_increase(t);
265
- }
266
- };
267
-
268
- template <typename ValueT>
269
- struct tuple_coeff<0, ValueT> {
270
- template <typename... T>
271
- EIGEN_DEVICE_FUNC static constexpr ValueT get(const Index /*i*/, const IndexTuple<T...>& t) {
272
- // eigen_assert (i == 0); // gcc fails to compile assertions in constexpr
273
- return array_get<0>(t)/* * (i == 0)*/;
274
- }
275
- template <typename... T>
276
- EIGEN_DEVICE_FUNC static void set(const Index i, IndexTuple<T...>& t, const ValueT value) {
277
- eigen_assert (i == 0);
278
- update_value(array_get<0>(t), value);
279
- }
280
- template <typename... T>
281
- EIGEN_DEVICE_FUNC static constexpr bool value_known_statically(const Index i, const IndexTuple<T...>&) {
282
- return is_compile_time_constant<typename IndexTupleExtractor<0, T...>::ValType>::value && (i == 0);
283
- }
284
-
285
- template <typename... T>
286
- EIGEN_DEVICE_FUNC static constexpr bool values_up_to_known_statically(const IndexTuple<T...>&) {
287
- return is_compile_time_constant<typename IndexTupleExtractor<0, T...>::ValType>::value;
288
- }
289
-
290
- template <typename... T>
291
- EIGEN_DEVICE_FUNC static constexpr bool values_up_to_statically_known_to_increase(const IndexTuple<T...>&) {
292
- return true;
293
- }
294
- };
295
- } // namespace internal
296
-
297
-
298
-
299
- template<typename FirstType, typename... OtherTypes>
300
- struct IndexList : internal::IndexTuple<FirstType, OtherTypes...> {
301
- EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC constexpr Index operator[] (const Index i) const {
302
- return internal::tuple_coeff<internal::array_size<internal::IndexTuple<FirstType, OtherTypes...> >::value-1, Index>::get(i, *this);
303
- }
304
- EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC constexpr Index get(const Index i) const {
305
- return internal::tuple_coeff<internal::array_size<internal::IndexTuple<FirstType, OtherTypes...> >::value-1, Index>::get(i, *this);
306
- }
307
- EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC void set(const Index i, const Index value) {
308
- return internal::tuple_coeff<internal::array_size<internal::IndexTuple<FirstType, OtherTypes...> >::value-1, Index>::set(i, *this, value);
309
- }
310
-
311
- EIGEN_DEVICE_FUNC constexpr IndexList(const internal::IndexTuple<FirstType, OtherTypes...>& other) : internal::IndexTuple<FirstType, OtherTypes...>(other) { }
312
- EIGEN_DEVICE_FUNC constexpr IndexList(FirstType& first, OtherTypes... other) : internal::IndexTuple<FirstType, OtherTypes...>(first, other...) { }
313
- EIGEN_DEVICE_FUNC constexpr IndexList() : internal::IndexTuple<FirstType, OtherTypes...>() { }
314
-
315
- EIGEN_DEVICE_FUNC constexpr bool value_known_statically(const Index i) const {
316
- return internal::tuple_coeff<internal::array_size<internal::IndexTuple<FirstType, OtherTypes...> >::value-1, Index>::value_known_statically(i, *this);
317
- }
318
- EIGEN_DEVICE_FUNC constexpr bool all_values_known_statically() const {
319
- return internal::tuple_coeff<internal::array_size<internal::IndexTuple<FirstType, OtherTypes...> >::value-1, Index>::values_up_to_known_statically(*this);
320
- }
321
-
322
- EIGEN_DEVICE_FUNC constexpr bool values_statically_known_to_increase() const {
323
- return internal::tuple_coeff<internal::array_size<internal::IndexTuple<FirstType, OtherTypes...> >::value-1, Index>::values_up_to_statically_known_to_increase(*this);
324
- }
325
- };
326
-
327
- template <typename FirstType, typename... OtherTypes>
328
- std::ostream& operator<<(std::ostream& os,
329
- const IndexList<FirstType, OtherTypes...>& dims) {
330
- os << "[";
331
- for (size_t i = 0; i < 1 + sizeof...(OtherTypes); ++i) {
332
- if (i > 0) os << ", ";
333
- os << dims[i];
334
- }
335
- os << "]";
336
- return os;
337
- }
338
-
339
- template<typename FirstType, typename... OtherTypes>
340
- constexpr IndexList<FirstType, OtherTypes...> make_index_list(FirstType val1, OtherTypes... other_vals) {
341
- return IndexList<FirstType, OtherTypes...>(val1, other_vals...);
342
- }
343
-
344
-
345
- template<typename FirstType, typename... OtherTypes>
346
- struct IndexPairList : internal::IndexTuple<FirstType, OtherTypes...> {
347
- EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC constexpr IndexPair<Index> operator[] (const Index i) const {
348
- return internal::tuple_coeff<internal::array_size<internal::IndexTuple<FirstType, OtherTypes...> >::value-1, IndexPair<Index>>::get(i, *this);
349
- }
350
- EIGEN_STRONG_INLINE EIGEN_DEVICE_FUNC void set(const Index i, const IndexPair<Index> value) {
351
- return internal::tuple_coeff<internal::array_size<internal::IndexTuple<FirstType, OtherTypes...>>::value-1, IndexPair<Index> >::set(i, *this, value);
352
- }
353
-
354
- EIGEN_DEVICE_FUNC constexpr IndexPairList(const internal::IndexTuple<FirstType, OtherTypes...>& other) : internal::IndexTuple<FirstType, OtherTypes...>(other) { }
355
- EIGEN_DEVICE_FUNC constexpr IndexPairList() : internal::IndexTuple<FirstType, OtherTypes...>() { }
356
-
357
- EIGEN_DEVICE_FUNC constexpr bool value_known_statically(const Index i) const {
358
- return internal::tuple_coeff<internal::array_size<internal::IndexTuple<FirstType, OtherTypes...> >::value-1, Index>::value_known_statically(i, *this);
359
- }
360
- };
361
-
362
- namespace internal {
363
-
364
- template<typename FirstType, typename... OtherTypes>
365
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE Index array_prod(const IndexList<FirstType, OtherTypes...>& sizes) {
366
- Index result = 1;
367
- EIGEN_UNROLL_LOOP
368
- for (size_t i = 0; i < array_size<IndexList<FirstType, OtherTypes...> >::value; ++i) {
369
- result *= sizes[i];
370
- }
371
- return result;
372
- }
373
-
374
- template<typename FirstType, typename... OtherTypes> struct array_size<IndexList<FirstType, OtherTypes...> > {
375
- static const size_t value = array_size<IndexTuple<FirstType, OtherTypes...> >::value;
376
- };
377
- template<typename FirstType, typename... OtherTypes> struct array_size<const IndexList<FirstType, OtherTypes...> > {
378
- static const size_t value = array_size<IndexTuple<FirstType, OtherTypes...> >::value;
379
- };
380
-
381
- template<typename FirstType, typename... OtherTypes> struct array_size<IndexPairList<FirstType, OtherTypes...> > {
382
- static const size_t value = std::tuple_size<std::tuple<FirstType, OtherTypes...> >::value;
383
- };
384
- template<typename FirstType, typename... OtherTypes> struct array_size<const IndexPairList<FirstType, OtherTypes...> > {
385
- static const size_t value = std::tuple_size<std::tuple<FirstType, OtherTypes...> >::value;
386
- };
387
-
388
- template<Index N, typename FirstType, typename... OtherTypes> EIGEN_DEVICE_FUNC constexpr Index array_get(IndexList<FirstType, OtherTypes...>& a) {
389
- return IndexTupleExtractor<N, FirstType, OtherTypes...>::get_val(a);
390
- }
391
- template<Index N, typename FirstType, typename... OtherTypes> EIGEN_DEVICE_FUNC constexpr Index array_get(const IndexList<FirstType, OtherTypes...>& a) {
392
- return IndexTupleExtractor<N, FirstType, OtherTypes...>::get_val(a);
393
- }
394
-
395
- template <typename T>
396
- struct index_known_statically_impl {
397
- EIGEN_DEVICE_FUNC static constexpr bool run(const Index) {
398
- return false;
399
- }
400
- };
401
-
402
- template <typename FirstType, typename... OtherTypes>
403
- struct index_known_statically_impl<IndexList<FirstType, OtherTypes...> > {
404
- EIGEN_DEVICE_FUNC static constexpr bool run(const Index i) {
405
- return IndexList<FirstType, OtherTypes...>().value_known_statically(i);
406
- }
407
- };
408
-
409
- template <typename FirstType, typename... OtherTypes>
410
- struct index_known_statically_impl<const IndexList<FirstType, OtherTypes...> > {
411
- EIGEN_DEVICE_FUNC static constexpr bool run(const Index i) {
412
- return IndexList<FirstType, OtherTypes...>().value_known_statically(i);
413
- }
414
- };
415
-
416
-
417
- template <typename T>
418
- struct all_indices_known_statically_impl {
419
- static constexpr bool run() {
420
- return false;
421
- }
422
- };
423
-
424
- template <typename FirstType, typename... OtherTypes>
425
- struct all_indices_known_statically_impl<IndexList<FirstType, OtherTypes...> > {
426
- EIGEN_DEVICE_FUNC static constexpr bool run() {
427
- return IndexList<FirstType, OtherTypes...>().all_values_known_statically();
428
- }
429
- };
430
-
431
- template <typename FirstType, typename... OtherTypes>
432
- struct all_indices_known_statically_impl<const IndexList<FirstType, OtherTypes...> > {
433
- EIGEN_DEVICE_FUNC static constexpr bool run() {
434
- return IndexList<FirstType, OtherTypes...>().all_values_known_statically();
435
- }
436
- };
437
-
438
-
439
- template <typename T>
440
- struct indices_statically_known_to_increase_impl {
441
- EIGEN_DEVICE_FUNC static constexpr bool run() {
442
- return false;
443
- }
444
- };
445
-
446
- template <typename FirstType, typename... OtherTypes>
447
- struct indices_statically_known_to_increase_impl<IndexList<FirstType, OtherTypes...> > {
448
- EIGEN_DEVICE_FUNC static constexpr bool run() {
449
- return Eigen::IndexList<FirstType, OtherTypes...>().values_statically_known_to_increase();
450
- }
451
- };
452
-
453
- template <typename FirstType, typename... OtherTypes>
454
- struct indices_statically_known_to_increase_impl<const IndexList<FirstType, OtherTypes...> > {
455
- EIGEN_DEVICE_FUNC static constexpr bool run() {
456
- return Eigen::IndexList<FirstType, OtherTypes...>().values_statically_known_to_increase();
457
- }
458
- };
459
-
460
-
461
- template <typename Tx>
462
- struct index_statically_eq_impl {
463
- EIGEN_DEVICE_FUNC static constexpr bool run(Index, Index) {
464
- return false;
465
- }
466
- };
467
-
468
- template <typename FirstType, typename... OtherTypes>
469
- struct index_statically_eq_impl<IndexList<FirstType, OtherTypes...> > {
470
- EIGEN_DEVICE_FUNC static constexpr bool run(const Index i, const Index value) {
471
- return IndexList<FirstType, OtherTypes...>().value_known_statically(i) &
472
- (IndexList<FirstType, OtherTypes...>().get(i) == value);
473
- }
474
- };
475
-
476
- template <typename FirstType, typename... OtherTypes>
477
- struct index_statically_eq_impl<const IndexList<FirstType, OtherTypes...> > {
478
- EIGEN_DEVICE_FUNC static constexpr bool run(const Index i, const Index value) {
479
- return IndexList<FirstType, OtherTypes...>().value_known_statically(i) &
480
- (IndexList<FirstType, OtherTypes...>().get(i) == value);
481
- }
482
- };
483
-
484
-
485
- template <typename T>
486
- struct index_statically_ne_impl {
487
- EIGEN_DEVICE_FUNC static constexpr bool run(Index, Index) {
488
- return false;
489
- }
490
- };
491
-
492
- template <typename FirstType, typename... OtherTypes>
493
- struct index_statically_ne_impl<IndexList<FirstType, OtherTypes...> > {
494
- EIGEN_DEVICE_FUNC static constexpr bool run(const Index i, const Index value) {
495
- return IndexList<FirstType, OtherTypes...>().value_known_statically(i) &
496
- (IndexList<FirstType, OtherTypes...>().get(i) != value);
497
- }
498
- };
499
-
500
- template <typename FirstType, typename... OtherTypes>
501
- struct index_statically_ne_impl<const IndexList<FirstType, OtherTypes...> > {
502
- EIGEN_DEVICE_FUNC static constexpr bool run(const Index i, const Index value) {
503
- return IndexList<FirstType, OtherTypes...>().value_known_statically(i) &
504
- (IndexList<FirstType, OtherTypes...>().get(i) != value);
505
- }
506
- };
507
-
508
-
509
- template <typename T>
510
- struct index_statically_gt_impl {
511
- EIGEN_DEVICE_FUNC static constexpr bool run(Index, Index) {
512
- return false;
513
- }
514
- };
515
-
516
- template <typename FirstType, typename... OtherTypes>
517
- struct index_statically_gt_impl<IndexList<FirstType, OtherTypes...> > {
518
- EIGEN_DEVICE_FUNC static constexpr bool run(const Index i, const Index value) {
519
- return IndexList<FirstType, OtherTypes...>().value_known_statically(i) &
520
- (IndexList<FirstType, OtherTypes...>().get(i) > value);
521
- }
522
- };
523
-
524
- template <typename FirstType, typename... OtherTypes>
525
- struct index_statically_gt_impl<const IndexList<FirstType, OtherTypes...> > {
526
- EIGEN_DEVICE_FUNC static constexpr bool run(const Index i, const Index value) {
527
- return IndexList<FirstType, OtherTypes...>().value_known_statically(i) &
528
- (IndexList<FirstType, OtherTypes...>().get(i) > value);
529
- }
530
- };
531
-
532
-
533
-
534
- template <typename T>
535
- struct index_statically_lt_impl {
536
- EIGEN_DEVICE_FUNC static constexpr bool run(Index, Index) {
537
- return false;
538
- }
539
- };
540
-
541
- template <typename FirstType, typename... OtherTypes>
542
- struct index_statically_lt_impl<IndexList<FirstType, OtherTypes...> > {
543
- EIGEN_DEVICE_FUNC static constexpr bool run(const Index i, const Index value) {
544
- return IndexList<FirstType, OtherTypes...>().value_known_statically(i) &
545
- (IndexList<FirstType, OtherTypes...>().get(i) < value);
546
- }
547
- };
548
-
549
- template <typename FirstType, typename... OtherTypes>
550
- struct index_statically_lt_impl<const IndexList<FirstType, OtherTypes...> > {
551
- EIGEN_DEVICE_FUNC static constexpr bool run(const Index i, const Index value) {
552
- return IndexList<FirstType, OtherTypes...>().value_known_statically(i) &
553
- (IndexList<FirstType, OtherTypes...>().get(i) < value);
554
- }
555
- };
556
-
557
-
558
-
559
- template <typename Tx>
560
- struct index_pair_first_statically_eq_impl {
561
- EIGEN_DEVICE_FUNC static constexpr bool run(Index, Index) {
562
- return false;
563
- }
564
- };
565
-
566
- template <typename FirstType, typename... OtherTypes>
567
- struct index_pair_first_statically_eq_impl<IndexPairList<FirstType, OtherTypes...> > {
568
- EIGEN_DEVICE_FUNC static constexpr bool run(const Index i, const Index value) {
569
- return IndexPairList<FirstType, OtherTypes...>().value_known_statically(i) &
570
- (IndexPairList<FirstType, OtherTypes...>().operator[](i).first == value);
571
- }
572
- };
573
-
574
- template <typename FirstType, typename... OtherTypes>
575
- struct index_pair_first_statically_eq_impl<const IndexPairList<FirstType, OtherTypes...> > {
576
- EIGEN_DEVICE_FUNC static constexpr bool run(const Index i, const Index value) {
577
- return IndexPairList<FirstType, OtherTypes...>().value_known_statically(i) &
578
- (IndexPairList<FirstType, OtherTypes...>().operator[](i).first == value);
579
- }
580
- };
581
-
582
-
583
-
584
- template <typename Tx>
585
- struct index_pair_second_statically_eq_impl {
586
- EIGEN_DEVICE_FUNC static constexpr bool run(Index, Index) {
587
- return false;
588
- }
589
- };
590
-
591
- template <typename FirstType, typename... OtherTypes>
592
- struct index_pair_second_statically_eq_impl<IndexPairList<FirstType, OtherTypes...> > {
593
- EIGEN_DEVICE_FUNC static constexpr bool run(const Index i, const Index value) {
594
- return IndexPairList<FirstType, OtherTypes...>().value_known_statically(i) &
595
- (IndexPairList<FirstType, OtherTypes...>().operator[](i).second == value);
596
- }
597
- };
598
-
599
- template <typename FirstType, typename... OtherTypes>
600
- struct index_pair_second_statically_eq_impl<const IndexPairList<FirstType, OtherTypes...> > {
601
- EIGEN_DEVICE_FUNC static constexpr bool run(const Index i, const Index value) {
602
- return IndexPairList<FirstType, OtherTypes...>().value_known_statically(i) &
603
- (IndexPairList<FirstType, OtherTypes...>().operator[](i).second == value);
604
- }
605
- };
606
-
607
-
608
- } // end namespace internal
609
- } // end namespace Eigen
610
-
611
- #else
612
-
613
- namespace Eigen {
614
- namespace internal {
615
-
616
- template <typename T>
617
- struct index_known_statically_impl {
618
- static EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE bool run(const Index) {
619
- return false;
620
- }
621
- };
622
-
623
- template <typename T>
624
- struct all_indices_known_statically_impl {
625
- static EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE bool run() {
626
- return false;
627
- }
628
- };
629
-
630
- template <typename T>
631
- struct indices_statically_known_to_increase_impl {
632
- static EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE bool run() {
633
- return false;
634
- }
635
- };
636
-
637
- template <typename T>
638
- struct index_statically_eq_impl {
639
- static EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE bool run(Index, Index) {
640
- return false;
641
- }
642
- };
643
-
644
- template <typename T>
645
- struct index_statically_ne_impl {
646
- static EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE bool run(Index, Index) {
647
- return false;
648
- }
649
- };
650
-
651
- template <typename T>
652
- struct index_statically_gt_impl {
653
- static EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE bool run(Index, Index) {
654
- return false;
655
- }
656
- };
657
-
658
- template <typename T>
659
- struct index_statically_lt_impl {
660
- static EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE bool run(Index, Index) {
661
- return false;
662
- }
663
- };
664
-
665
- template <typename Tx>
666
- struct index_pair_first_statically_eq_impl {
667
- static EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE bool run(Index, Index) {
668
- return false;
669
- }
670
- };
671
-
672
- template <typename Tx>
673
- struct index_pair_second_statically_eq_impl {
674
- static EIGEN_DEVICE_FUNC EIGEN_ALWAYS_INLINE bool run(Index, Index) {
675
- return false;
676
- }
677
- };
678
-
679
-
680
-
681
- } // end namespace internal
682
- } // end namespace Eigen
683
-
684
- #endif
685
-
686
-
687
- namespace Eigen {
688
- namespace internal {
689
- template <typename T>
690
- static EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR bool index_known_statically(Index i) {
691
- return index_known_statically_impl<T>::run(i);
692
- }
693
-
694
- template <typename T>
695
- static EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR bool all_indices_known_statically() {
696
- return all_indices_known_statically_impl<T>::run();
697
- }
698
-
699
- template <typename T>
700
- static EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR bool indices_statically_known_to_increase() {
701
- return indices_statically_known_to_increase_impl<T>::run();
702
- }
703
-
704
- template <typename T>
705
- static EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR bool index_statically_eq(Index i, Index value) {
706
- return index_statically_eq_impl<T>::run(i, value);
707
- }
708
-
709
- template <typename T>
710
- static EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR bool index_statically_ne(Index i, Index value) {
711
- return index_statically_ne_impl<T>::run(i, value);
712
- }
713
-
714
- template <typename T>
715
- static EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR bool index_statically_gt(Index i, Index value) {
716
- return index_statically_gt_impl<T>::run(i, value);
717
- }
718
-
719
- template <typename T>
720
- static EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR bool index_statically_lt(Index i, Index value) {
721
- return index_statically_lt_impl<T>::run(i, value);
722
- }
723
-
724
- template <typename T>
725
- static EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR bool index_pair_first_statically_eq(Index i, Index value) {
726
- return index_pair_first_statically_eq_impl<T>::run(i, value);
727
- }
728
-
729
- template <typename T>
730
- static EIGEN_DEVICE_FUNC EIGEN_CONSTEXPR bool index_pair_second_statically_eq(Index i, Index value) {
731
- return index_pair_second_statically_eq_impl<T>::run(i, value);
732
- }
733
-
734
- } // end namespace internal
735
- } // end namespace Eigen
736
-
737
-
738
- #endif // EIGEN_CXX11_TENSOR_TENSOR_INDEX_LIST_H