sequenzo 0.1.17__cp311-cp311-macosx_10_9_universal2.whl → 0.1.19__cp311-cp311-macosx_10_9_universal2.whl

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  1. sequenzo/__init__.py +64 -8
  2. sequenzo/big_data/clara/clara.py +1 -1
  3. sequenzo/big_data/clara/utils/get_weighted_diss.c +155 -155
  4. sequenzo/big_data/clara/utils/get_weighted_diss.cpython-311-darwin.so +0 -0
  5. sequenzo/clustering/KMedoids.py +39 -0
  6. sequenzo/clustering/hierarchical_clustering.py +304 -8
  7. sequenzo/define_sequence_data.py +44 -3
  8. sequenzo/dissimilarity_measures/c_code.cpython-311-darwin.so +0 -0
  9. sequenzo/dissimilarity_measures/get_distance_matrix.py +1 -2
  10. sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +1 -1
  11. sequenzo/dissimilarity_measures/src/DHDdistance.cpp +13 -37
  12. sequenzo/dissimilarity_measures/src/LCPdistance.cpp +13 -37
  13. sequenzo/dissimilarity_measures/src/OMdistance.cpp +12 -47
  14. sequenzo/dissimilarity_measures/src/OMspellDistance.cpp +103 -67
  15. sequenzo/dissimilarity_measures/src/dp_utils.h +160 -0
  16. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_arithmetic.hpp +41 -16
  17. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_complex.hpp +4 -0
  18. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_details.hpp +7 -0
  19. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_logical.hpp +10 -0
  20. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_math.hpp +127 -43
  21. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_memory.hpp +30 -2
  22. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_swizzle.hpp +174 -0
  23. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/common/xsimd_common_trigo.hpp +14 -5
  24. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx.hpp +111 -54
  25. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx2.hpp +131 -9
  26. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512bw.hpp +11 -113
  27. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512dq.hpp +39 -7
  28. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512f.hpp +336 -30
  29. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi.hpp +9 -37
  30. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_avx512vbmi2.hpp +58 -0
  31. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common.hpp +1 -0
  32. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_common_fwd.hpp +35 -2
  33. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_constants.hpp +3 -1
  34. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_emulated.hpp +17 -0
  35. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_avx.hpp +13 -0
  36. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma3_sse.hpp +18 -0
  37. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_fma4.hpp +13 -0
  38. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_isa.hpp +8 -0
  39. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon.hpp +363 -34
  40. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_neon64.hpp +7 -0
  41. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_rvv.hpp +13 -0
  42. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_scalar.hpp +41 -4
  43. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse2.hpp +252 -16
  44. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sse3.hpp +9 -0
  45. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_ssse3.hpp +12 -1
  46. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_sve.hpp +7 -0
  47. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_vsx.hpp +892 -0
  48. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/arch/xsimd_wasm.hpp +78 -1
  49. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_arch.hpp +3 -1
  50. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_config.hpp +13 -2
  51. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_cpuid.hpp +5 -0
  52. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/config/xsimd_inline.hpp +5 -1
  53. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_all_registers.hpp +2 -0
  54. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_api.hpp +64 -1
  55. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_batch.hpp +36 -0
  56. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_rvv_register.hpp +40 -31
  57. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_traits.hpp +8 -0
  58. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/types/xsimd_vsx_register.hpp +77 -0
  59. sequenzo/dissimilarity_measures/src/xsimd/include/xsimd/xsimd.hpp +6 -0
  60. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +155 -155
  61. sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cpython-311-darwin.so +0 -0
  62. sequenzo/dissimilarity_measures/utils/seqconc.c +155 -155
  63. sequenzo/dissimilarity_measures/utils/seqconc.cpython-311-darwin.so +0 -0
  64. sequenzo/dissimilarity_measures/utils/seqdss.c +155 -155
  65. sequenzo/dissimilarity_measures/utils/seqdss.cpython-311-darwin.so +0 -0
  66. sequenzo/dissimilarity_measures/utils/seqdur.c +155 -155
  67. sequenzo/dissimilarity_measures/utils/seqdur.cpython-311-darwin.so +0 -0
  68. sequenzo/dissimilarity_measures/utils/seqlength.c +155 -155
  69. sequenzo/dissimilarity_measures/utils/seqlength.cpython-311-darwin.so +0 -0
  70. sequenzo/multidomain/cat.py +0 -53
  71. sequenzo/multidomain/idcd.py +0 -1
  72. sequenzo/openmp_setup.py +233 -0
  73. sequenzo/sequence_characteristics/__init__.py +4 -0
  74. sequenzo/sequence_characteristics/complexity_index.py +17 -57
  75. sequenzo/sequence_characteristics/overall_cross_sectional_entropy.py +177 -111
  76. sequenzo/sequence_characteristics/plot_characteristics.py +30 -11
  77. sequenzo/sequence_characteristics/simple_characteristics.py +1 -0
  78. sequenzo/sequence_characteristics/state_frequencies_and_entropy_per_sequence.py +9 -3
  79. sequenzo/sequence_characteristics/turbulence.py +47 -67
  80. sequenzo/sequence_characteristics/variance_of_spell_durations.py +19 -9
  81. sequenzo/sequence_characteristics/within_sequence_entropy.py +5 -58
  82. sequenzo/visualization/plot_sequence_index.py +58 -35
  83. sequenzo/visualization/plot_state_distribution.py +57 -36
  84. sequenzo/visualization/plot_transition_matrix.py +21 -22
  85. sequenzo/with_event_history_analysis/__init__.py +35 -0
  86. sequenzo/with_event_history_analysis/sequence_analysis_multi_state_model.py +850 -0
  87. sequenzo/with_event_history_analysis/sequence_history_analysis.py +283 -0
  88. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/METADATA +48 -14
  89. sequenzo-0.1.19.dist-info/RECORD +215 -0
  90. sequenzo/dissimilarity_measures/setup.py +0 -35
  91. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LDLT.h +0 -688
  92. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT.h +0 -558
  93. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Cholesky/LLT_LAPACKE.h +0 -99
  94. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/CholmodSupport/CholmodSupport.h +0 -682
  95. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h +0 -346
  96. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h +0 -462
  97. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h +0 -91
  98. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h +0 -622
  99. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h +0 -418
  100. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h +0 -226
  101. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h +0 -374
  102. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h +0 -158
  103. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealQZ.h +0 -657
  104. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur.h +0 -558
  105. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h +0 -77
  106. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h +0 -904
  107. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h +0 -87
  108. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h +0 -561
  109. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AlignedBox.h +0 -486
  110. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/AngleAxis.h +0 -247
  111. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/EulerAngles.h +0 -114
  112. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Homogeneous.h +0 -501
  113. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Hyperplane.h +0 -282
  114. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/OrthoMethods.h +0 -235
  115. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/ParametrizedLine.h +0 -232
  116. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Quaternion.h +0 -870
  117. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Rotation2D.h +0 -199
  118. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/RotationBase.h +0 -206
  119. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Scaling.h +0 -188
  120. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Transform.h +0 -1563
  121. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Translation.h +0 -202
  122. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/Umeyama.h +0 -166
  123. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Geometry/arch/Geometry_SIMD.h +0 -168
  124. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/BlockHouseholder.h +0 -110
  125. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/Householder.h +0 -176
  126. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Householder/HouseholderSequence.h +0 -545
  127. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h +0 -226
  128. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h +0 -212
  129. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h +0 -229
  130. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h +0 -394
  131. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h +0 -453
  132. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h +0 -444
  133. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h +0 -198
  134. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h +0 -117
  135. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Jacobi/Jacobi.h +0 -483
  136. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/KLUSupport/KLUSupport.h +0 -358
  137. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/Determinant.h +0 -117
  138. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/FullPivLU.h +0 -877
  139. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/InverseImpl.h +0 -432
  140. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU.h +0 -624
  141. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/PartialPivLU_LAPACKE.h +0 -83
  142. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/LU/arch/InverseSize4.h +0 -351
  143. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/MetisSupport/MetisSupport.h +0 -137
  144. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Amd.h +0 -435
  145. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Eigen_Colamd.h +0 -1863
  146. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/OrderingMethods/Ordering.h +0 -153
  147. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PaStiXSupport/PaStiXSupport.h +0 -678
  148. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/PardisoSupport/PardisoSupport.h +0 -545
  149. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h +0 -674
  150. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h +0 -97
  151. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/CompleteOrthogonalDecomposition.h +0 -635
  152. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h +0 -713
  153. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR.h +0 -434
  154. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/QR/HouseholderQR_LAPACKE.h +0 -68
  155. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h +0 -335
  156. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/BDCSVD.h +0 -1366
  157. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD.h +0 -812
  158. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/JacobiSVD_LAPACKE.h +0 -91
  159. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/SVDBase.h +0 -376
  160. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h +0 -414
  161. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky.h +0 -697
  162. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h +0 -174
  163. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/AmbiVector.h +0 -378
  164. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/CompressedStorage.h +0 -274
  165. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h +0 -352
  166. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/MappedSparseMatrix.h +0 -67
  167. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseAssign.h +0 -270
  168. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseBlock.h +0 -571
  169. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseColEtree.h +0 -206
  170. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCompressedBase.h +0 -370
  171. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseBinaryOp.h +0 -722
  172. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseCwiseUnaryOp.h +0 -150
  173. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDenseProduct.h +0 -342
  174. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDiagonalProduct.h +0 -138
  175. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseDot.h +0 -98
  176. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseFuzzy.h +0 -29
  177. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMap.h +0 -305
  178. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrix.h +0 -1518
  179. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseMatrixBase.h +0 -398
  180. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparsePermutation.h +0 -178
  181. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseProduct.h +0 -181
  182. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRedux.h +0 -49
  183. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseRef.h +0 -397
  184. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSelfAdjointView.h +0 -659
  185. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSolverBase.h +0 -124
  186. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseSparseProductWithPruning.h +0 -198
  187. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTranspose.h +0 -92
  188. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseTriangularView.h +0 -189
  189. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseUtil.h +0 -186
  190. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseVector.h +0 -478
  191. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/SparseView.h +0 -254
  192. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseCore/TriangularSolver.h +0 -315
  193. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU.h +0 -923
  194. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLUImpl.h +0 -66
  195. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Memory.h +0 -226
  196. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Structs.h +0 -110
  197. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h +0 -375
  198. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_Utils.h +0 -80
  199. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_bmod.h +0 -181
  200. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_column_dfs.h +0 -179
  201. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h +0 -107
  202. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_gemm_kernel.h +0 -280
  203. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h +0 -126
  204. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_kernel_bmod.h +0 -130
  205. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_bmod.h +0 -223
  206. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_panel_dfs.h +0 -258
  207. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pivotL.h +0 -137
  208. sequenzo/dissimilarity_measures/src/eigen/Eigen/src/SparseLU/SparseLU_pruneL.h +0 -136
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  403. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/HipVectorCompatibility.h +0 -67
  404. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsArrayAPI.h +0 -167
  405. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsBFloat16.h +0 -58
  406. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsFunctors.h +0 -330
  407. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsHalf.h +0 -58
  408. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsImpl.h +0 -2045
  409. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/SpecialFunctionsPacketMath.h +0 -79
  410. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/BesselFunctions.h +0 -46
  411. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX/SpecialFunctions.h +0 -16
  412. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/BesselFunctions.h +0 -46
  413. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/AVX512/SpecialFunctions.h +0 -16
  414. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/GPU/SpecialFunctions.h +0 -369
  415. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/BesselFunctions.h +0 -54
  416. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/SpecialFunctions/arch/NEON/SpecialFunctions.h +0 -34
  417. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/Spline.h +0 -507
  418. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFitting.h +0 -431
  419. sequenzo/dissimilarity_measures/src/eigen/unsupported/Eigen/src/Splines/SplineFwd.h +0 -93
  420. sequenzo-0.1.17.dist-info/RECORD +0 -537
  421. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/WHEEL +0 -0
  422. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/licenses/LICENSE +0 -0
  423. {sequenzo-0.1.17.dist-info → sequenzo-0.1.19.dist-info}/top_level.txt +0 -0
@@ -1,456 +0,0 @@
1
- // This file is part of Eigen, a lightweight C++ template library
2
- // for linear algebra.
3
- //
4
- // Copyright (C) 2015 Benoit Steiner <benoit.steiner.goog@gmail.com>
5
- //
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- // This Source Code Form is subject to the terms of the Mozilla
7
- // Public License v. 2.0. If a copy of the MPL was not distributed
8
- // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9
-
10
- #ifndef EIGEN_CXX11_TENSOR_TENSOR_CONVERSION_H
11
- #define EIGEN_CXX11_TENSOR_TENSOR_CONVERSION_H
12
-
13
- namespace Eigen {
14
-
15
- /** \class TensorConversionOp
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- * \ingroup CXX11_Tensor_Module
17
- *
18
- * \brief Tensor conversion class. This class makes it possible to vectorize
19
- * type casting operations when the number of scalars per packet in the source
20
- * and the destination type differ
21
- */
22
- namespace internal {
23
- template<typename TargetType, typename XprType>
24
- struct traits<TensorConversionOp<TargetType, XprType> >
25
- {
26
- // Type promotion to handle the case where the types of the lhs and the rhs are different.
27
- typedef TargetType Scalar;
28
- typedef typename traits<XprType>::StorageKind StorageKind;
29
- typedef typename traits<XprType>::Index Index;
30
- typedef typename XprType::Nested Nested;
31
- typedef typename remove_reference<Nested>::type _Nested;
32
- static const int NumDimensions = traits<XprType>::NumDimensions;
33
- static const int Layout = traits<XprType>::Layout;
34
- enum { Flags = 0 };
35
- typedef typename TypeConversion<Scalar, typename traits<XprType>::PointerType>::type PointerType;
36
- };
37
-
38
- template<typename TargetType, typename XprType>
39
- struct eval<TensorConversionOp<TargetType, XprType>, Eigen::Dense>
40
- {
41
- typedef const TensorConversionOp<TargetType, XprType>& type;
42
- };
43
-
44
- template<typename TargetType, typename XprType>
45
- struct nested<TensorConversionOp<TargetType, XprType>, 1, typename eval<TensorConversionOp<TargetType, XprType> >::type>
46
- {
47
- typedef TensorConversionOp<TargetType, XprType> type;
48
- };
49
-
50
- } // end namespace internal
51
-
52
-
53
- template <typename TensorEvaluator, typename SrcPacket, typename TgtPacket, int SrcCoeffRatio, int TgtCoeffRatio>
54
- struct PacketConverter;
55
-
56
- template <typename TensorEvaluator, typename SrcPacket, typename TgtPacket>
57
- struct PacketConverter<TensorEvaluator, SrcPacket, TgtPacket, 1, 1> {
58
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
59
- PacketConverter(const TensorEvaluator& impl)
60
- : m_impl(impl) {}
61
-
62
- template<int LoadMode, typename Index>
63
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TgtPacket packet(Index index) const {
64
- return internal::pcast<SrcPacket, TgtPacket>(m_impl.template packet<LoadMode>(index));
65
- }
66
-
67
- private:
68
- const TensorEvaluator& m_impl;
69
- };
70
-
71
-
72
- template <typename TensorEvaluator, typename SrcPacket, typename TgtPacket>
73
- struct PacketConverter<TensorEvaluator, SrcPacket, TgtPacket, 2, 1> {
74
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
75
- PacketConverter(const TensorEvaluator& impl)
76
- : m_impl(impl) {}
77
-
78
- template<int LoadMode, typename Index>
79
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TgtPacket packet(Index index) const {
80
- const int SrcPacketSize = internal::unpacket_traits<SrcPacket>::size;
81
-
82
- SrcPacket src1 = m_impl.template packet<LoadMode>(index);
83
- SrcPacket src2 = m_impl.template packet<LoadMode>(index + SrcPacketSize);
84
- TgtPacket result = internal::pcast<SrcPacket, TgtPacket>(src1, src2);
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- return result;
86
- }
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-
88
- private:
89
- const TensorEvaluator& m_impl;
90
- };
91
-
92
- template <typename TensorEvaluator, typename SrcPacket, typename TgtPacket>
93
- struct PacketConverter<TensorEvaluator, SrcPacket, TgtPacket, 4, 1> {
94
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
95
- PacketConverter(const TensorEvaluator& impl)
96
- : m_impl(impl) {}
97
-
98
- template<int LoadMode, typename Index>
99
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TgtPacket packet(Index index) const {
100
- const int SrcPacketSize = internal::unpacket_traits<SrcPacket>::size;
101
-
102
- SrcPacket src1 = m_impl.template packet<LoadMode>(index);
103
- SrcPacket src2 = m_impl.template packet<LoadMode>(index + SrcPacketSize);
104
- SrcPacket src3 = m_impl.template packet<LoadMode>(index + 2 * SrcPacketSize);
105
- SrcPacket src4 = m_impl.template packet<LoadMode>(index + 3 * SrcPacketSize);
106
- TgtPacket result = internal::pcast<SrcPacket, TgtPacket>(src1, src2, src3, src4);
107
- return result;
108
- }
109
-
110
- private:
111
- const TensorEvaluator& m_impl;
112
- };
113
-
114
- template <typename TensorEvaluator, typename SrcPacket, typename TgtPacket>
115
- struct PacketConverter<TensorEvaluator, SrcPacket, TgtPacket, 8, 1> {
116
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
117
- PacketConverter(const TensorEvaluator& impl)
118
- : m_impl(impl) {}
119
-
120
- template<int LoadMode, typename Index>
121
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TgtPacket packet(Index index) const {
122
- const int SrcPacketSize = internal::unpacket_traits<SrcPacket>::size;
123
-
124
- SrcPacket src1 = m_impl.template packet<LoadMode>(index);
125
- SrcPacket src2 = m_impl.template packet<LoadMode>(index + 1 * SrcPacketSize);
126
- SrcPacket src3 = m_impl.template packet<LoadMode>(index + 2 * SrcPacketSize);
127
- SrcPacket src4 = m_impl.template packet<LoadMode>(index + 3 * SrcPacketSize);
128
- SrcPacket src5 = m_impl.template packet<LoadMode>(index + 4 * SrcPacketSize);
129
- SrcPacket src6 = m_impl.template packet<LoadMode>(index + 5 * SrcPacketSize);
130
- SrcPacket src7 = m_impl.template packet<LoadMode>(index + 6 * SrcPacketSize);
131
- SrcPacket src8 = m_impl.template packet<LoadMode>(index + 7 * SrcPacketSize);
132
- TgtPacket result = internal::pcast<SrcPacket, TgtPacket>(src1, src2, src3, src4, src5, src6, src7, src8);
133
- return result;
134
- }
135
-
136
- private:
137
- const TensorEvaluator& m_impl;
138
- };
139
-
140
- template <typename TensorEvaluator, typename SrcPacket, typename TgtPacket, int TgtCoeffRatio>
141
- struct PacketConverter<TensorEvaluator, SrcPacket, TgtPacket, 1, TgtCoeffRatio> {
142
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
143
- PacketConverter(const TensorEvaluator& impl)
144
- : m_impl(impl), m_maxIndex(impl.dimensions().TotalSize()) {}
145
-
146
- template<int LoadMode, typename Index>
147
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TgtPacket packet(Index index) const {
148
- const int SrcPacketSize = internal::unpacket_traits<SrcPacket>::size;
149
- // Only call m_impl.packet() when we have direct access to the underlying data. This
150
- // ensures that we don't compute the subexpression twice. We may however load some
151
- // coefficients twice, but in practice this doesn't negatively impact performance.
152
- if (m_impl.data() && (index + SrcPacketSize < m_maxIndex)) {
153
- // Force unaligned memory loads since we can't ensure alignment anymore
154
- return internal::pcast<SrcPacket, TgtPacket>(m_impl.template packet<Unaligned>(index));
155
- } else {
156
- const int TgtPacketSize = internal::unpacket_traits<TgtPacket>::size;
157
- typedef typename internal::unpacket_traits<SrcPacket>::type SrcType;
158
- typedef typename internal::unpacket_traits<TgtPacket>::type TgtType;
159
- internal::scalar_cast_op<SrcType, TgtType> converter;
160
- EIGEN_ALIGN_MAX typename internal::unpacket_traits<TgtPacket>::type values[TgtPacketSize];
161
- EIGEN_UNROLL_LOOP
162
- for (int i = 0; i < TgtPacketSize; ++i) {
163
- values[i] = converter(m_impl.coeff(index+i));
164
- }
165
- TgtPacket rslt = internal::pload<TgtPacket>(values);
166
- return rslt;
167
- }
168
- }
169
-
170
- private:
171
- const TensorEvaluator& m_impl;
172
- const typename TensorEvaluator::Index m_maxIndex;
173
- };
174
-
175
- template<typename TargetType, typename XprType>
176
- class TensorConversionOp : public TensorBase<TensorConversionOp<TargetType, XprType>, ReadOnlyAccessors>
177
- {
178
- public:
179
- typedef typename internal::traits<TensorConversionOp>::Scalar Scalar;
180
- typedef typename internal::traits<TensorConversionOp>::StorageKind StorageKind;
181
- typedef typename internal::traits<TensorConversionOp>::Index Index;
182
- typedef typename internal::nested<TensorConversionOp>::type Nested;
183
- typedef Scalar CoeffReturnType;
184
- typedef typename NumTraits<Scalar>::Real RealScalar;
185
-
186
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorConversionOp(const XprType& xpr)
187
- : m_xpr(xpr) {}
188
-
189
- EIGEN_DEVICE_FUNC
190
- const typename internal::remove_all<typename XprType::Nested>::type&
191
- expression() const { return m_xpr; }
192
-
193
- protected:
194
- typename XprType::Nested m_xpr;
195
- };
196
-
197
- template <bool SameType, typename Eval, typename EvalPointerType> struct ConversionSubExprEval {
198
- static EIGEN_STRONG_INLINE bool run(Eval& impl, EvalPointerType) {
199
- impl.evalSubExprsIfNeeded(NULL);
200
- return true;
201
- }
202
- };
203
-
204
- template <typename Eval, typename EvalPointerType> struct ConversionSubExprEval<true, Eval, EvalPointerType> {
205
- static EIGEN_STRONG_INLINE bool run(Eval& impl, EvalPointerType data) {
206
- return impl.evalSubExprsIfNeeded(data);
207
- }
208
- };
209
-
210
- #ifdef EIGEN_USE_THREADS
211
- template <bool SameType, typename Eval, typename EvalPointerType,
212
- typename EvalSubExprsCallback>
213
- struct ConversionSubExprEvalAsync {
214
- static EIGEN_STRONG_INLINE void run(Eval& impl, EvalPointerType, EvalSubExprsCallback done) {
215
- impl.evalSubExprsIfNeededAsync(nullptr, std::move(done));
216
- }
217
- };
218
-
219
- template <typename Eval, typename EvalPointerType,
220
- typename EvalSubExprsCallback>
221
- struct ConversionSubExprEvalAsync<true, Eval, EvalPointerType,
222
- EvalSubExprsCallback> {
223
- static EIGEN_STRONG_INLINE void run(Eval& impl, EvalPointerType data, EvalSubExprsCallback done) {
224
- impl.evalSubExprsIfNeededAsync(data, std::move(done));
225
- }
226
- };
227
- #endif
228
-
229
- namespace internal {
230
-
231
- template <typename SrcType, typename TargetType, bool IsSameT>
232
- struct CoeffConv {
233
- template <typename ArgType, typename Device>
234
- static EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TargetType run(const TensorEvaluator<ArgType, Device>& impl, Index index) {
235
- internal::scalar_cast_op<SrcType, TargetType> converter;
236
- return converter(impl.coeff(index));
237
- }
238
- };
239
-
240
- template <typename SrcType, typename TargetType>
241
- struct CoeffConv<SrcType, TargetType, true> {
242
- template <typename ArgType, typename Device>
243
- static EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TargetType run(const TensorEvaluator<ArgType, Device>& impl, Index index) {
244
- return impl.coeff(index);
245
- }
246
- };
247
-
248
- template <typename SrcPacket, typename TargetPacket, int LoadMode, bool ActuallyVectorize, bool IsSameT>
249
- struct PacketConv {
250
- typedef typename internal::unpacket_traits<SrcPacket>::type SrcType;
251
- typedef typename internal::unpacket_traits<TargetPacket>::type TargetType;
252
-
253
- static const int PacketSize = internal::unpacket_traits<TargetPacket>::size;
254
-
255
- template <typename ArgType, typename Device>
256
- static EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TargetPacket run(const TensorEvaluator<ArgType, Device>& impl, Index index) {
257
- internal::scalar_cast_op<SrcType, TargetType> converter;
258
- EIGEN_ALIGN_MAX typename internal::remove_const<TargetType>::type values[PacketSize];
259
- EIGEN_UNROLL_LOOP
260
- for (int i = 0; i < PacketSize; ++i) {
261
- values[i] = converter(impl.coeff(index+i));
262
- }
263
- TargetPacket rslt = internal::pload<TargetPacket>(values);
264
- return rslt;
265
- }
266
- };
267
-
268
- template <typename SrcPacket, typename TargetPacket, int LoadMode, bool IsSameT>
269
- struct PacketConv<SrcPacket, TargetPacket, LoadMode, true, IsSameT> {
270
- typedef typename internal::unpacket_traits<SrcPacket>::type SrcType;
271
- typedef typename internal::unpacket_traits<TargetPacket>::type TargetType;
272
-
273
- template <typename ArgType, typename Device>
274
- static EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TargetPacket run(const TensorEvaluator<ArgType, Device>& impl, Index index) {
275
- const int SrcCoeffRatio = internal::type_casting_traits<SrcType, TargetType>::SrcCoeffRatio;
276
- const int TgtCoeffRatio = internal::type_casting_traits<SrcType, TargetType>::TgtCoeffRatio;
277
- PacketConverter<TensorEvaluator<ArgType, Device>, SrcPacket, TargetPacket,
278
- SrcCoeffRatio, TgtCoeffRatio> converter(impl);
279
- return converter.template packet<LoadMode>(index);
280
- }
281
- };
282
-
283
- template <typename SrcPacket, typename TargetPacket, int LoadMode>
284
- struct PacketConv<SrcPacket, TargetPacket, LoadMode, /*ActuallyVectorize=*/false, /*IsSameT=*/true> {
285
- typedef typename internal::unpacket_traits<TargetPacket>::type TargetType;
286
- static const int PacketSize = internal::unpacket_traits<TargetPacket>::size;
287
-
288
- template <typename ArgType, typename Device>
289
- static EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TargetPacket run(const TensorEvaluator<ArgType, Device>& impl, Index index) {
290
- EIGEN_ALIGN_MAX typename internal::remove_const<TargetType>::type values[PacketSize];
291
- for (int i = 0; i < PacketSize; ++i) values[i] = impl.coeff(index+i);
292
- return internal::pload<TargetPacket>(values);
293
- }
294
- };
295
-
296
- template <typename SrcPacket, typename TargetPacket, int LoadMode>
297
- struct PacketConv<SrcPacket, TargetPacket, LoadMode, /*ActuallyVectorize=*/true, /*IsSameT=*/true> {
298
- template <typename ArgType, typename Device>
299
- static EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TargetPacket run(const TensorEvaluator<ArgType, Device>& impl, Index index) {
300
- return impl.template packet<LoadMode>(index);
301
- }
302
- };
303
-
304
- } // namespace internal
305
-
306
- // Eval as rvalue
307
- template<typename TargetType, typename ArgType, typename Device>
308
- struct TensorEvaluator<const TensorConversionOp<TargetType, ArgType>, Device>
309
- {
310
- typedef TensorConversionOp<TargetType, ArgType> XprType;
311
- typedef typename XprType::Index Index;
312
- typedef typename TensorEvaluator<ArgType, Device>::Dimensions Dimensions;
313
- typedef TargetType Scalar;
314
- typedef TargetType CoeffReturnType;
315
- typedef typename internal::remove_all<typename internal::traits<ArgType>::Scalar>::type SrcType;
316
- typedef typename PacketType<CoeffReturnType, Device>::type PacketReturnType;
317
- typedef typename PacketType<SrcType, Device>::type PacketSourceType;
318
- static const int PacketSize = PacketType<CoeffReturnType, Device>::size;
319
- static const bool IsSameType = internal::is_same<TargetType, SrcType>::value;
320
- typedef StorageMemory<CoeffReturnType, Device> Storage;
321
- typedef typename Storage::Type EvaluatorPointerType;
322
-
323
- enum {
324
- IsAligned = false,
325
- PacketAccess =
326
- #ifndef EIGEN_USE_SYCL
327
- true,
328
- #else
329
- TensorEvaluator<ArgType, Device>::PacketAccess &
330
- internal::type_casting_traits<SrcType, TargetType>::VectorizedCast,
331
- #endif
332
- BlockAccess = TensorEvaluator<ArgType, Device>::BlockAccess,
333
- PreferBlockAccess = TensorEvaluator<ArgType, Device>::PreferBlockAccess,
334
- Layout = TensorEvaluator<ArgType, Device>::Layout,
335
- RawAccess = false
336
- };
337
-
338
- static const int NumDims = internal::array_size<Dimensions>::value;
339
-
340
- //===- Tensor block evaluation strategy (see TensorBlock.h) -------------===//
341
- typedef internal::TensorBlockDescriptor<NumDims, Index> TensorBlockDesc;
342
- typedef internal::TensorBlockScratchAllocator<Device> TensorBlockScratch;
343
-
344
- typedef typename TensorEvaluator<const ArgType, Device>::TensorBlock
345
- ArgTensorBlock;
346
-
347
- struct TensorConversionOpBlockFactory {
348
- template <typename ArgXprType>
349
- struct XprType {
350
- typedef TensorConversionOp<TargetType, const ArgXprType> type;
351
- };
352
-
353
- template <typename ArgXprType>
354
- typename XprType<ArgXprType>::type expr(const ArgXprType& expr) const {
355
- return typename XprType<ArgXprType>::type(expr);
356
- }
357
- };
358
-
359
- typedef internal::TensorUnaryExprBlock<TensorConversionOpBlockFactory,
360
- ArgTensorBlock>
361
- TensorBlock;
362
- //===--------------------------------------------------------------------===//
363
-
364
- EIGEN_STRONG_INLINE TensorEvaluator(const XprType& op, const Device& device)
365
- : m_impl(op.expression(), device)
366
- {
367
- }
368
-
369
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Dimensions& dimensions() const { return m_impl.dimensions(); }
370
-
371
- EIGEN_STRONG_INLINE bool evalSubExprsIfNeeded(EvaluatorPointerType data)
372
- {
373
- return ConversionSubExprEval<IsSameType, TensorEvaluator<ArgType, Device>, EvaluatorPointerType>::run(m_impl, data);
374
- }
375
-
376
- #ifdef EIGEN_USE_THREADS
377
- template <typename EvalSubExprsCallback>
378
- EIGEN_STRONG_INLINE void evalSubExprsIfNeededAsync(
379
- EvaluatorPointerType data, EvalSubExprsCallback done) {
380
- ConversionSubExprEvalAsync<IsSameType, TensorEvaluator<ArgType, Device>,
381
- EvaluatorPointerType,
382
- EvalSubExprsCallback>::run(m_impl, data, std::move(done));
383
- }
384
- #endif
385
-
386
- EIGEN_STRONG_INLINE void cleanup()
387
- {
388
- m_impl.cleanup();
389
- }
390
-
391
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE CoeffReturnType coeff(Index index) const
392
- {
393
- return internal::CoeffConv<SrcType, TargetType, IsSameType>::run(m_impl,index);
394
- }
395
-
396
- template<int LoadMode>
397
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE PacketReturnType
398
- packet(Index index) const {
399
- // If we are not going to do the cast, we just need to check that base
400
- // TensorEvaluator has packet access. Otherwise we also need to make sure,
401
- // that we have an implementation of vectorized cast.
402
- const bool Vectorizable =
403
- IsSameType
404
- ? TensorEvaluator<ArgType, Device>::PacketAccess
405
- : int(TensorEvaluator<ArgType, Device>::PacketAccess) &
406
- int(internal::type_casting_traits<SrcType, TargetType>::VectorizedCast);
407
-
408
- return internal::PacketConv<PacketSourceType, PacketReturnType, LoadMode,
409
- Vectorizable, IsSameType>::run(m_impl, index);
410
- }
411
-
412
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorOpCost
413
- costPerCoeff(bool vectorized) const {
414
- const double cast_cost = TensorOpCost::CastCost<SrcType, TargetType>();
415
- if (vectorized) {
416
- const double SrcCoeffRatio =
417
- internal::type_casting_traits<SrcType, TargetType>::SrcCoeffRatio;
418
- const double TgtCoeffRatio =
419
- internal::type_casting_traits<SrcType, TargetType>::TgtCoeffRatio;
420
- return m_impl.costPerCoeff(vectorized) * (SrcCoeffRatio / PacketSize) +
421
- TensorOpCost(0, 0, TgtCoeffRatio * (cast_cost / PacketSize));
422
- } else {
423
- return m_impl.costPerCoeff(vectorized) + TensorOpCost(0, 0, cast_cost);
424
- }
425
- }
426
-
427
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE
428
- internal::TensorBlockResourceRequirements getResourceRequirements() const {
429
- return m_impl.getResourceRequirements();
430
- }
431
-
432
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE TensorBlock
433
- block(TensorBlockDesc& desc, TensorBlockScratch& scratch,
434
- bool /*root_of_expr_ast*/ = false) const {
435
- return TensorBlock(m_impl.block(desc, scratch),
436
- TensorConversionOpBlockFactory());
437
- }
438
-
439
- EIGEN_DEVICE_FUNC EvaluatorPointerType data() const { return NULL; }
440
-
441
- /// required by sycl in order to extract the sycl accessor
442
- const TensorEvaluator<ArgType, Device>& impl() const { return m_impl; }
443
- #ifdef EIGEN_USE_SYCL
444
- // binding placeholder accessors to a command group handler for SYCL
445
- EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void bind(cl::sycl::handler &cgh) const {
446
- m_impl.bind(cgh);
447
- }
448
- #endif
449
-
450
- protected:
451
- TensorEvaluator<ArgType, Device> m_impl;
452
- };
453
-
454
- } // end namespace Eigen
455
-
456
- #endif // EIGEN_CXX11_TENSOR_TENSOR_CONVERSION_H