scitex 2.8.1__py3-none-any.whl → 2.10.0__py3-none-any.whl

scitex/fts/_fig/_dataclasses/_Theme.py

@@ -0,0 +1,441 @@
+#!/usr/bin/env python3
+# Timestamp: 2025-12-21
+# File: /home/ywatanabe/proj/scitex-code/src/scitex/fts/_fig/_dataclasses/_Theme.py
+
+"""Theme - Visual aesthetics for FTS bundles."""
+
+import json
+from dataclasses import dataclass, field
+from typing import Any, Dict, List, Optional
+
+THEME_VERSION = "1.0.0"
+
+
+@dataclass
+class Colors:
+    """Color palette configuration."""
+
+    palette: List[str] = field(
+        default_factory=lambda: ["#1f77b4", "#ff7f0e", "#2ca02c", "#d62728", "#9467bd"]
+    )
+    primary: Optional[str] = None
+    secondary: Optional[str] = None
+    background: str = "#ffffff"
+    text: str = "#000000"
+    axis: str = "#333333"
+    grid: str = "#e0e0e0"
+
+    def to_dict(self) -> Dict[str, Any]:
+        result = {
+            "palette": self.palette,
+            "background": self.background,
+            "text": self.text,
+            "axis": self.axis,
+            "grid": self.grid,
+        }
+        if self.primary:
+            result["primary"] = self.primary
+        if self.secondary:
+            result["secondary"] = self.secondary
+        return result
+
+    @classmethod
+    def from_dict(cls, data: Any) -> "Colors":
+        # Return if already a Colors instance
+        if isinstance(data, cls):
+            return data
+        if not isinstance(data, dict):
+            return cls()
+        return cls(
+            palette=data.get("palette", ["#1f77b4", "#ff7f0e", "#2ca02c"]),
+            primary=data.get("primary"),
+            secondary=data.get("secondary"),
+            background=data.get("background", "#ffffff"),
+            text=data.get("text", "#000000"),
+            axis=data.get("axis", "#333333"),
+            grid=data.get("grid", "#e0e0e0"),
+        )
+
+
+@dataclass
+class Typography:
+    """Typography configuration."""
+
+    family: str = "sans-serif"
+    size_pt: float = 8.0
+    title_size_pt: float = 10.0
+    label_size_pt: float = 8.0
+    tick_size_pt: float = 7.0
+
+    def to_dict(self) -> Dict[str, Any]:
+        return {
+            "family": self.family,
+            "size_pt": self.size_pt,
+            "title_size_pt": self.title_size_pt,
+            "label_size_pt": self.label_size_pt,
+            "tick_size_pt": self.tick_size_pt,
+        }
+
+    @classmethod
+    def from_dict(cls, data: Any) -> "Typography":
+        # Return if already a Typography instance
+        if isinstance(data, cls):
+            return data
+        if not isinstance(data, dict):
+            return cls()
+        return cls(
+            family=data.get("family", "sans-serif"),
+            size_pt=data.get("size_pt", 8.0),
+            title_size_pt=data.get("title_size_pt", data.get("title_size", 10.0)),
+            label_size_pt=data.get("label_size_pt", data.get("label_size", 8.0)),
+            tick_size_pt=data.get("tick_size_pt", data.get("tick_size", 7.0)),
+        )
+
+
+@dataclass
+class Lines:
+    """Line style configuration."""
+
+    width_pt: float = 1.0
+    style: str = "solid"  # solid, dashed, dotted, dashdot
+
+    def to_dict(self) -> Dict[str, Any]:
+        return {"width_pt": self.width_pt, "style": self.style}
+
+    @classmethod
+    def from_dict(cls, data: Any) -> "Lines":
+        if isinstance(data, cls):
+            return data
+        if not isinstance(data, dict):
+            return cls()
+        return cls(
+            width_pt=data.get("width_pt", 1.0),
+            style=data.get("style", "solid"),
+        )
+
+
+@dataclass
+class Markers:
+    """Marker style configuration."""
+
+    size_pt: float = 4.0
+    symbol: str = "circle"  # circle, square, triangle, cross, diamond
+
+    def to_dict(self) -> Dict[str, Any]:
+        return {"size_pt": self.size_pt, "symbol": self.symbol}
+
+    @classmethod
+    def from_dict(cls, data: Any) -> "Markers":
+        if isinstance(data, cls):
+            return data
+        if not isinstance(data, dict):
+            return cls()
+        return cls(
+            size_pt=data.get("size_pt", 4.0),
+            symbol=data.get("symbol", "circle"),
+        )
+
+
+@dataclass
+class Grid:
+    """Grid line configuration."""
+
+    show: bool = True
+    major_width_pt: float = 0.5
+    minor_width_pt: float = 0.25
+    major_alpha: float = 0.3
+    minor_alpha: float = 0.1
+
+    def to_dict(self) -> Dict[str, Any]:
+        return {
+            "show": self.show,
+            "major_width_pt": self.major_width_pt,
+            "minor_width_pt": self.minor_width_pt,
+            "major_alpha": self.major_alpha,
+            "minor_alpha": self.minor_alpha,
+        }
+
+    @classmethod
+    def from_dict(cls, data: Any) -> "Grid":
+        if isinstance(data, cls):
+            return data
+        if isinstance(data, bool):
+            return cls(show=data)
+        if not isinstance(data, dict):
+            return cls()
+        return cls(
+            show=data.get("show", True),
+            major_width_pt=data.get("major_width_pt", 0.5),
+            minor_width_pt=data.get("minor_width_pt", 0.25),
+            major_alpha=data.get("major_alpha", 0.3),
+            minor_alpha=data.get("minor_alpha", 0.1),
+        )
+
+
+@dataclass
+class TraceTheme:
+    """Per-trace theme overrides."""
+
+    trace_id: str
+    color: Optional[str] = None
+    line_width_pt: Optional[float] = None
+    marker_size_pt: Optional[float] = None
+    alpha: Optional[float] = None
+
+    def to_dict(self) -> Dict[str, Any]:
+        result = {"trace_id": self.trace_id}
+        if self.color:
+            result["color"] = self.color
+        if self.line_width_pt is not None:
+            result["line_width_pt"] = self.line_width_pt
+        if self.marker_size_pt is not None:
+            result["marker_size_pt"] = self.marker_size_pt
+        if self.alpha is not None:
+            result["alpha"] = self.alpha
+        return result
+
+    @classmethod
+    def from_dict(cls, data: Any) -> "TraceTheme":
+        if isinstance(data, cls):
+            return data
+        if not isinstance(data, dict):
+            return cls(trace_id="trace_0")
+        return cls(
+            trace_id=data.get("trace_id", "trace_0"),
+            color=data.get("color"),
+            line_width_pt=data.get("line_width_pt"),
+            marker_size_pt=data.get("marker_size_pt"),
+            alpha=data.get("alpha"),
+        )
+
+
+@dataclass
+class FigureTitle:
+    """Figure title configuration for publications."""
+
+    text: str = ""
+    prefix: str = "Figure"
+    number: Optional[int] = None
+    fontsize: Optional[float] = None
+    fontweight: str = "bold"
+
+    def to_dict(self) -> Dict[str, Any]:
+        result = {"text": self.text, "prefix": self.prefix, "fontweight": self.fontweight}
+        if self.number is not None:
+            result["number"] = self.number
+        if self.fontsize is not None:
+            result["fontsize"] = self.fontsize
+        return result
+
+    @classmethod
+    def from_dict(cls, data: Any) -> "FigureTitle":
+        if isinstance(data, cls):
+            return data
+        if not isinstance(data, dict):
+            return cls()
+        return cls(
+            text=data.get("text", ""),
+            prefix=data.get("prefix", "Figure"),
+            number=data.get("number"),
+            fontsize=data.get("fontsize"),
+            fontweight=data.get("fontweight", "bold"),
+        )
+
+
+@dataclass
+class PanelDescription:
+    """Single panel description for captions."""
+
+    label: str
+    description: str
+
+    def to_dict(self) -> Dict[str, Any]:
+        return {"label": self.label, "description": self.description}
+
+    @classmethod
+    def from_dict(cls, data: Any) -> "PanelDescription":
+        if isinstance(data, cls):
+            return data
+        if not isinstance(data, dict):
+            return cls(label="", description="")
+        return cls(
+            label=data.get("label", ""),
+            description=data.get("description", ""),
+        )
+
+
+@dataclass
+class Caption:
+    """Figure caption for publications."""
+
+    text: str = ""
+    panels: List[PanelDescription] = field(default_factory=list)
+
+    def to_dict(self) -> Dict[str, Any]:
+        result = {"text": self.text}
+        if self.panels:
+            result["panels"] = [p.to_dict() for p in self.panels]
+        return result
+
+    @classmethod
+    def from_dict(cls, data: Any) -> "Caption":
+        if isinstance(data, cls):
+            return data
+        if not isinstance(data, dict):
+            return cls()
+        panels = [PanelDescription.from_dict(p) for p in data.get("panels", [])]
+        return cls(text=data.get("text", ""), panels=panels)
+
+
+@dataclass
+class PanelLabels:
+    """Panel label styling (A, B, C, etc.)."""
+
+    style: str = "uppercase"  # uppercase, lowercase, numeric
+    fontsize: float = 12.0
+    fontweight: str = "bold"
+    position: str = "top-left"  # top-left, top-right, bottom-left, bottom-right
+    offset_x: float = 0.02
+    offset_y: float = 0.98
+
+    def to_dict(self) -> Dict[str, Any]:
+        return {
+            "style": self.style,
+            "fontsize": self.fontsize,
+            "fontweight": self.fontweight,
+            "position": self.position,
+            "offset_x": self.offset_x,
+            "offset_y": self.offset_y,
+        }
+
+    @classmethod
+    def from_dict(cls, data: Any) -> "PanelLabels":
+        if isinstance(data, cls):
+            return data
+        if not isinstance(data, dict):
+            return cls()
+        return cls(
+            style=data.get("style", "uppercase"),
+            fontsize=data.get("fontsize", 12.0),
+            fontweight=data.get("fontweight", "bold"),
+            position=data.get("position", "top-left"),
+            offset_x=data.get("offset_x", 0.02),
+            offset_y=data.get("offset_y", 0.98),
+        )
+
+
+@dataclass
+class Theme:
+    """Complete theme specification for an FTS bundle.
+
+    Stored in canonical/theme.json.
+    """
+
+    # Core mode
+    mode: str = "light"  # "light" | "dark"
+
+    # Styling components
+    colors: Colors = field(default_factory=Colors)
+    typography: Typography = field(default_factory=Typography)
+    lines: Lines = field(default_factory=Lines)
+    markers: Markers = field(default_factory=Markers)
+    grid: Grid = field(default_factory=Grid)
+
+    # Per-trace overrides
+    traces: List[TraceTheme] = field(default_factory=list)
+
+    # Publication metadata
+    preset: Optional[str] = None  # nature, science, cell, ieee, acs, minimal, presentation
+    figure_title: Optional[FigureTitle] = None
+    caption: Optional[Caption] = None
+    panel_labels: Optional[PanelLabels] = None
+
+    # Alias for typography (for convenience)
+    fonts: Optional[Typography] = None
+
+    # Schema metadata
+    schema_name: str = "fts.theme"
+    schema_version: str = THEME_VERSION
+
+    def to_dict(self) -> Dict[str, Any]:
+        result = {
+            "mode": self.mode,
+            "colors": self.colors.to_dict(),
+            "typography": self.typography.to_dict(),
+            "lines": self.lines.to_dict(),
+            "markers": self.markers.to_dict(),
+            "grid": self.grid.to_dict(),
+        }
+        if self.traces:
+            result["traces"] = [t.to_dict() for t in self.traces]
+        if self.preset:
+            result["preset"] = self.preset
+        if self.figure_title:
+            result["figure_title"] = self.figure_title.to_dict()
+        if self.caption:
+            result["caption"] = self.caption.to_dict()
+        if self.panel_labels:
+            result["panel_labels"] = self.panel_labels.to_dict()
+        return result
+
+    def to_json(self, indent: int = 2) -> str:
+        return json.dumps(self.to_dict(), indent=indent)
+
+    @classmethod
+    def from_dict(cls, data: Dict[str, Any]) -> "Theme":
+        # Handle fonts as alias for typography
+        typography_data = data.get("typography", {})
+        fonts_data = data.get("fonts")
+        if fonts_data and not typography_data:
+            typography_data = fonts_data
+
+        # Parse figure_title
+        figure_title = None
+        if "figure_title" in data and data["figure_title"]:
+            figure_title = FigureTitle.from_dict(data["figure_title"])
+
+        # Parse caption
+        caption = None
+        if "caption" in data and data["caption"]:
+            caption = Caption.from_dict(data["caption"])
+
+        # Parse panel_labels
+        panel_labels = None
+        if "panel_labels" in data and data["panel_labels"]:
+            panel_labels = PanelLabels.from_dict(data["panel_labels"])
+
+        return cls(
+            mode=data.get("mode", "light"),
+            colors=Colors.from_dict(data.get("colors", {})),
+            typography=Typography.from_dict(typography_data),
+            lines=Lines.from_dict(data.get("lines", {})),
+            markers=Markers.from_dict(data.get("markers", {})),
+            grid=Grid.from_dict(data.get("grid", {})),
+            traces=[TraceTheme.from_dict(t) for t in data.get("traces", [])],
+            preset=data.get("preset"),
+            figure_title=figure_title,
+            caption=caption,
+            panel_labels=panel_labels,
+        )
+
+    @classmethod
+    def from_json(cls, json_str: str) -> "Theme":
+        return cls.from_dict(json.loads(json_str))
+
+
+__all__ = [
+    "THEME_VERSION",
+    "Colors",
+    "Typography",
+    "Lines",
+    "Markers",
+    "Grid",
+    "TraceTheme",
+    "FigureTitle",
+    "PanelDescription",
+    "Caption",
+    "PanelLabels",
+    "Theme",
+]
+
+# EOF

scitex/fts/_fig/_dataclasses/_TraceEncoding.py

@@ -0,0 +1,52 @@
+#!/usr/bin/env python3
+# Timestamp: 2025-12-20
+# File: /home/ywatanabe/proj/scitex-code/src/scitex/fsb/_dataclasses/TraceEncoding.py
+
+"""TraceEncoding - Encoding for a single trace/data series."""
+
+from dataclasses import dataclass
+from typing import Any, Dict, Optional
+
+from ._ChannelEncoding import ChannelEncoding
+
+
+@dataclass
+class TraceEncoding:
+    """Encoding specification for a single trace/data series."""
+
+    trace_id: str
+    data_ref: Optional[str] = None  # Path to data file within bundle
+    x: Optional[ChannelEncoding] = None
+    y: Optional[ChannelEncoding] = None
+    color: Optional[ChannelEncoding] = None
+    size: Optional[ChannelEncoding] = None
+    group: Optional[ChannelEncoding] = None
+    label: Optional[ChannelEncoding] = None
+
+    def to_dict(self) -> Dict[str, Any]:
+        result = {"trace_id": self.trace_id}
+        if self.data_ref:
+            result["data_ref"] = self.data_ref
+        for channel in ["x", "y", "color", "size", "group", "label"]:
+            enc = getattr(self, channel)
+            if enc:
+                result[channel] = enc.to_dict()
+        return result
+
+    @classmethod
+    def from_dict(cls, data: Dict[str, Any]) -> "TraceEncoding":
+        return cls(
+            trace_id=data.get("trace_id", "trace_0"),
+            data_ref=data.get("data_ref"),
+            x=ChannelEncoding.from_dict(data["x"]) if "x" in data else None,
+            y=ChannelEncoding.from_dict(data["y"]) if "y" in data else None,
+            color=ChannelEncoding.from_dict(data["color"]) if "color" in data else None,
+            size=ChannelEncoding.from_dict(data["size"]) if "size" in data else None,
+            group=ChannelEncoding.from_dict(data["group"]) if "group" in data else None,
+            label=ChannelEncoding.from_dict(data["label"]) if "label" in data else None,
+        )
+
+
+__all__ = ["TraceEncoding"]
+
+# EOF

scitex/fts/_fig/_dataclasses/__init__.py

@@ -0,0 +1,47 @@
+#!/usr/bin/env python3
+# Timestamp: 2025-12-21
+# File: /home/ywatanabe/proj/scitex-code/src/scitex/fts/_fig/_dataclasses/__init__.py
+
+"""Figure-specific dataclasses for FTS."""
+
+from ._ChannelEncoding import ChannelEncoding
+from ._Encoding import ENCODING_VERSION, AxesConfig, Encoding
+from ._Theme import (
+    THEME_VERSION,
+    Caption,
+    Colors,
+    FigureTitle,
+    Grid,
+    Lines,
+    Markers,
+    PanelDescription,
+    PanelLabels,
+    Theme,
+    TraceTheme,
+    Typography,
+)
+from ._TraceEncoding import TraceEncoding
+
+__all__ = [
+    # Encoding
+    "ENCODING_VERSION",
+    "AxesConfig",
+    "ChannelEncoding",
+    "TraceEncoding",
+    "Encoding",
+    # Theme
+    "THEME_VERSION",
+    "Colors",
+    "Typography",
+    "Lines",
+    "Markers",
+    "Grid",
+    "TraceTheme",
+    "FigureTitle",
+    "PanelDescription",
+    "Caption",
+    "PanelLabels",
+    "Theme",
+]
+
+# EOF

scitex/fts/_fig/_editor/__init__.py

@@ -0,0 +1,14 @@
+#!/usr/bin/env python3
+# Timestamp: 2025-12-20
+# File: /home/ywatanabe/proj/scitex-code/src/scitex/fsb/_fig/editor/__init__.py
+
+"""FTS Figure Editor - Interactive GUI for editing figure styles."""
+
+from ._cui import edit, save_manual_overrides
+
+__all__ = [
+    "edit",
+    "save_manual_overrides",
+]
+
+# EOF

scitex/fts/_fig/_editor/_cui/__init__.py

@@ -0,0 +1,33 @@
+#!/usr/bin/env python3
+# Timestamp: 2025-12-20
+# File: /home/ywatanabe/proj/scitex-code/src/scitex/fsb/_fig/editor/cui/__init__.py
+
+"""CUI module for launching visual figure editors."""
+
+from ._backend_detector import detect_best_backend, print_available_backends
+from ._bundle_resolver import (
+    resolve_figz_bundle,
+    resolve_layered_pltz_bundle,
+    resolve_pltz_bundle,
+    resolve_stx_bundle,
+)
+from ._editor_launcher import edit
+from ._manual_handler import compute_file_hash, save_manual_overrides
+from ._panel_loader import load_panel_data
+from ._path_resolver import resolve_figure_paths
+
+__all__ = [
+    "edit",
+    "detect_best_backend",
+    "print_available_backends",
+    "resolve_figure_paths",
+    "resolve_pltz_bundle",
+    "resolve_figz_bundle",
+    "resolve_layered_pltz_bundle",
+    "resolve_stx_bundle",
+    "load_panel_data",
+    "compute_file_hash",
+    "save_manual_overrides",
+]
+
+# EOF

scitex/fts/_fig/_editor/_cui/_backend_detector.py

@@ -0,0 +1,39 @@
+#!/usr/bin/env python3
+# Timestamp: 2025-12-20
+# File: /home/ywatanabe/proj/scitex-code/src/scitex/fsb/_fig/_editor/_cui/_backend_detector.py
+
+"""Backend detection for figure editor (Flask only)."""
+
+__all__ = ["print_available_backends", "detect_best_backend"]
+
+
+def print_available_backends() -> None:
+    """Print Flask backend availability."""
+    print("\n" + "=" * 50)
+    print("SciTeX Visual Editor")
+    print("=" * 50)
+
+    try:
+        import flask
+
+        print(f"  Flask: [OK] {flask.__version__}")
+    except ImportError:
+        print("  Flask: [NOT INSTALLED]")
+        print("\nInstall: pip install flask")
+
+    print("=" * 50 + "\n")
+
+
+def detect_best_backend() -> str:
+    """Return Flask as the only supported backend."""
+    try:
+        import flask
+
+        return "flask"
+    except ImportError:
+        raise ImportError(
+            "Flask is required for the editor. Install with: pip install flask"
+        )
+
+
+# EOF