scitex 2.8.1__py3-none-any.whl → 2.10.0__py3-none-any.whl

scitex/scholar/docs/to_claude/guidelines/examples/mgmt/BULLETIN_BOARD_EXAMPLE.md

@@ -1,99 +0,0 @@
-<!-- ---
-!-- Timestamp: 2025-09-01 08:05:48
-!-- Author: ywatanabe
-!-- File: /home/ywatanabe/.claude/to_claude/guidelines/examples/mgmt/BULLETIN_BOARD_EXAMPLE.md
-!-- --- -->
-
-# Active Agents
-
--   BulletinBoardOrganizerAgent
--   DebuggerAgent (4 sessions completed)
--   TestDeveloperAgent (ready to implement fixes)
--   SourceDeveloperAgent (ready to implement fixes)
--   TestRunnerAgent (ready to validate fixes)
-
-# STATUS UPDATE
-
-``` yaml
-message:
-  timestamp: 2025-08-28 07:46
-  from:    "DebuggerAgent"
-  to:      "ALL_AGENTS"
-  subject: "DEBUGGING VICTORIES: 4 Sessions Complete"
-  priority: "HIGH"
-  message: "Major fixes identified and documented. Ready for implementation."
-  status: "FIXES_READY"
-```
-
-# DEBUGGING VICTORIES - IMPLEMENTATION READY
-
-## ✅ FIXED: ChunkContainer Attribute Errors
-
--   Fixed 2 test files: test\_~PythonChunker~.py, test\_~ShellChunker~.py
--   Solution: Changed chunk.document~path~ → chunk.document~metadata~.file~path~
-
-## ✅ IDENTIFIED: Missing Fixture Error
-
--   Issue: baseline~generator~ fixture scope problem
--   Solution: Move from class-level to module-level in test~intelligenceperformancesuite~.py
-
-## ✅ ROOT CAUSE: Markdown Chunking Failure
-
--   Issue: ~BaseChunker~.py has overly strict size validation
--   Solution: Relax validation for word boundary optimization
-
-## ✅ DOCUMENTED: OpenAI API Configuration
-
--   Issue: 3 tests need proper mocking setup
--   Solutions: Complete mocking strategy in /tmp/openai~debugreport~.md
--   Details: Mock chain fixes, environment variable handling, function signature updates
-
-# IMPLEMENTATION QUEUE
-
-``` yaml
-message:
-  timestamp: 2025-08-28 07:46
-  from:    "BulletinBoardOrganizerAgent"  
-  to:      "TestDeveloperAgent", "SourceDeveloperAgent"
-  subject: "ACTION_REQUIRED: Implement Identified Fixes"
-  priority: "HIGH"
-  message: "Debug analysis complete. Ready for systematic implementation."
-  action_items:
-    - "✅ Apply ChunkContainer fixes (2 files already identified)"
-    - "🔧 Fix baseline_generator fixture scope in performance tests"
-    - "🔧 Relax _BaseChunker.py size validation logic"
-    - "🔧 Implement OpenAI mock fixes (3 specific tests, solutions documented)"
-    - "🔍 Continue debugging remaining test failures with same methodology"
-```
-
-# CURRENT TEST STATUS
-
--   Source/Test Agreement: 76/76 (100%)
--   Debug Sessions Completed: 4/4 ✅
--   Critical Fixes Identified: 4 major categories
--   Implementation Ready: Yes
-
-# AVAILABLE COMMANDS
-
-\`\`\`bash
-make agreement-coverage \# Check source/test agreement
-make test-full \# Run complete test suite
-make test-changed \# Run tests for changed code only
-make test-watch \# Run tests in watch mode
-\`\`\`
-
-# REFERENCE FILES
-
--   OpenAI Debug Report: /tmp/openai~debugreport~.md
--   ChunkContainer Fix Details: 2 test files identified
--   Performance Test Fix: baseline~generator~ fixture scope issue
--   Chunking Logic Fix: ~BaseChunker~.py validation relaxation needed
-
-# CLEAN BULLETIN BOARD GUIDELINES
-
--   Keep messages under 7 lines
--   Reference external files for detailed logs/data
--   Remove deprecated entries regularly
--   Focus on actionable items and current priorities
-
-<!-- EOF -->

scitex/scholar/docs/to_claude/guidelines/examples/mgmt/PROJECT_DESCRIPTION_EXAMPLE.md

@@ -1,96 +0,0 @@
-# Project Name
-
-semantic-graph
-
-# Purpose
-
-A sophisticated semantic search engine package that migrates and enhances the complete document MCP server functionality into a clean, pip-installable Python package. The system provides comprehensive document understanding, chunking, vector search, and knowledge graph capabilities.
-
-# Migration Context
-
-This project migrates sophisticated functionality from ~doc~-mcp-server/ which contains a complete document MCP server implementation with:
-
--   Multi-format document chunking (Markdown, Python, Shell, Text)
--   ChromaDB vector database integration
--   Knowledge graph construction and querying
--   Multiple search strategies (semantic, keyword, hybrid)
--   Comprehensive type system with dataclasses
--   Advanced utilities for caching, file operations, and text processing
-
-# Key Features
-
-## Core Search Engine
-
--   Multi-strategy search: semantic, keyword, hybrid, and knowledge graph-based
--   ChromaDB vector database integration with optimized indexing
--   Configurable similarity thresholds and result ranking
-
-## Document Processing & Chunking
-
--   Multi-format support: Markdown, Python, Shell scripts, plain text
--   Specialized chunkers with format-aware parsing (BaseChunker, MarkdownChunker, PythonChunker, ShellChunker, TextChunker)
--   Configurable chunk size and overlap strategies
--   Metadata extraction and preservation (ChunkMetadata with document paths, types, relationships)
-
-## Knowledge Graph Integration
-
--   Entity relationship mapping from document content
--   Graph-based search and discovery
--   Semantic relationship analysis
--   Cross-document connection identification
-
-## MCP Server Capabilities
-
--   Full MCP protocol implementation for document management
--   Resource-based document access
--   Tool-based search and indexing operations
--   Claude Code integration support
--   FastMCP 2.0 compliance
-
-## Advanced Utilities
-
--   Intelligent caching system with TTL management
--   File system utilities with recursive processing
--   Text preprocessing and normalization
--   Performance monitoring and optimization
-
-# Architecture Migration Strategy
-
-Migrating from ~doc~-mcp-server structure to semantic-graph while:
-
--   Preserving all existing capabilities and performance
--   Following established naming conventions (underscore prefixes, verb~object~ methods)
--   Maintaining comprehensive test coverage
--   Supporting both library and MCP server usage modes
--   Ensuring clean domain separation (chunkers/, db/, search/, graph/, config/)
--   Integrating PriorityConfig for centralized configuration management with precedence resolution
-
-# Target Users
-
--   Developers building document search applications
--   Research teams requiring semantic document retrieval
--   Organizations implementing knowledge management systems
--   AI application developers needing document understanding
--   Claude Code users wanting document MCP server functionality
-
-# Success Criteria
-
--   Complete migration of ~doc~-mcp-server functionality with zero capability loss
--   Clean package architecture following user philosophy patterns
--   Comprehensive test suite with \>90% coverage maintained
--   Performance parity or improvement over original implementation
--   Seamless MCP server integration with Claude Code
--   Clear API documentation and usage examples
-
-## Migration Phases
-
-1.  \[PENDING\] Architecture agreement and directory structure design
-2.  \[PENDING\] Core types and configuration migration
-3.  \[PENDING\] Chunking system migration with all specialized chunkers
-4.  \[PENDING\] Database layer migration (ChromaVectorDBManager)
-5.  \[PENDING\] Search engine and knowledge graph migration
-6.  \[PENDING\] MCP server implementation migration
-7.  \[PENDING\] Utilities and helper functions migration
-8.  \[PENDING\] Comprehensive test suite migration and validation
-9.  \[PENDING\] CLI interface and usage examples
-10. \[PENDING\] Documentation and deployment preparation