scitex 2.17.3__py3-none-any.whl → 2.17.4__py3-none-any.whl

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Files changed (57) hide show
  1. scitex/_dev/_dashboard/_routes.py +13 -0
  2. scitex/_dev/_dashboard/_scripts.py +144 -23
  3. scitex/_dev/_dashboard/_styles.py +90 -0
  4. scitex/_dev/_dashboard/_templates.py +14 -1
  5. scitex/_dev/_rtd.py +122 -0
  6. scitex/_dev/_ssh.py +38 -8
  7. scitex/dev/plt/data/mpl/PLOTTING_FUNCTIONS.yaml +90 -0
  8. scitex/dev/plt/data/mpl/PLOTTING_SIGNATURES.yaml +1571 -0
  9. scitex/dev/plt/data/mpl/PLOTTING_SIGNATURES_DETAILED.yaml +6262 -0
  10. scitex/dev/plt/data/mpl/SIGNATURES_FLATTENED.yaml +1274 -0
  11. scitex/dev/plt/data/mpl/dir_ax.txt +459 -0
  12. scitex/scholar/_mcp/crossref_handlers.py +45 -7
  13. scitex/scholar/_mcp/openalex_handlers.py +45 -7
  14. scitex/scholar/config/default.yaml +2 -0
  15. scitex/scholar/data/.gitkeep +0 -0
  16. scitex/scholar/data/README.md +44 -0
  17. scitex/scholar/data/bib_files/bibliography.bib +1952 -0
  18. scitex/scholar/data/bib_files/neurovista.bib +277 -0
  19. scitex/scholar/data/bib_files/neurovista_enriched.bib +441 -0
  20. scitex/scholar/data/bib_files/neurovista_enriched_enriched.bib +441 -0
  21. scitex/scholar/data/bib_files/neurovista_processed.bib +338 -0
  22. scitex/scholar/data/bib_files/openaccess.bib +89 -0
  23. scitex/scholar/data/bib_files/pac-seizure_prediction_enriched.bib +2178 -0
  24. scitex/scholar/data/bib_files/pac.bib +698 -0
  25. scitex/scholar/data/bib_files/pac_enriched.bib +1061 -0
  26. scitex/scholar/data/bib_files/pac_processed.bib +0 -0
  27. scitex/scholar/data/bib_files/pac_titles.txt +75 -0
  28. scitex/scholar/data/bib_files/paywalled.bib +98 -0
  29. scitex/scholar/data/bib_files/related-papers-by-coauthors.bib +58 -0
  30. scitex/scholar/data/bib_files/related-papers-by-coauthors_enriched.bib +87 -0
  31. scitex/scholar/data/bib_files/seizure_prediction.bib +694 -0
  32. scitex/scholar/data/bib_files/seizure_prediction_processed.bib +0 -0
  33. scitex/scholar/data/bib_files/test_complete_enriched.bib +437 -0
  34. scitex/scholar/data/bib_files/test_final_enriched.bib +437 -0
  35. scitex/scholar/data/bib_files/test_seizure.bib +46 -0
  36. scitex/scholar/data/impact_factor/JCR_IF_2022.xlsx +0 -0
  37. scitex/scholar/data/impact_factor/JCR_IF_2024.db +0 -0
  38. scitex/scholar/data/impact_factor/JCR_IF_2024.xlsx +0 -0
  39. scitex/scholar/data/impact_factor/JCR_IF_2024_v01.db +0 -0
  40. scitex/scholar/data/impact_factor.db +0 -0
  41. scitex/scholar/local_dbs/__init__.py +5 -1
  42. scitex/scholar/local_dbs/export.py +93 -0
  43. scitex/scholar/local_dbs/unified.py +505 -0
  44. scitex/scholar/metadata_engines/ScholarEngine.py +11 -0
  45. scitex/scholar/metadata_engines/individual/OpenAlexLocalEngine.py +346 -0
  46. scitex/scholar/metadata_engines/individual/__init__.py +1 -0
  47. {scitex-2.17.3.dist-info → scitex-2.17.4.dist-info}/METADATA +1 -1
  48. {scitex-2.17.3.dist-info → scitex-2.17.4.dist-info}/RECORD +51 -22
  49. scitex/scholar/url_finder/.tmp/open_url/KNOWN_RESOLVERS.py +0 -462
  50. scitex/scholar/url_finder/.tmp/open_url/README.md +0 -223
  51. scitex/scholar/url_finder/.tmp/open_url/_DOIToURLResolver.py +0 -694
  52. scitex/scholar/url_finder/.tmp/open_url/_OpenURLResolver.py +0 -1160
  53. scitex/scholar/url_finder/.tmp/open_url/_ResolverLinkFinder.py +0 -344
  54. scitex/scholar/url_finder/.tmp/open_url/__init__.py +0 -24
  55. {scitex-2.17.3.dist-info → scitex-2.17.4.dist-info}/WHEEL +0 -0
  56. {scitex-2.17.3.dist-info → scitex-2.17.4.dist-info}/entry_points.txt +0 -0
  57. {scitex-2.17.3.dist-info → scitex-2.17.4.dist-info}/licenses/LICENSE +0 -0
@@ -0,0 +1,44 @@
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+ # Scholar Data Directory
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+
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+ User-provided data files. This directory is gitignored.
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+
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+ ## Structure
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+
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+ ```
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+ data/
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+ └── impact_factor/
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+ ├── JCR_IF_2024.xlsx # JCR Excel file (user-provided)
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+ ├── JCR_IF_2024.db # SQLite database (generated)
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+ └── impact_factor.db -> JCR_IF_2024.db (symlink to active DB)
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+ ```
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+
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+ ## Important
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+
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+ - **Data NOT included in git**: This directory is gitignored
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+ - **User responsibility**: Users must provide their own JCR data
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+ - **Licensing**: Users must ensure proper licensing for any data
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+
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+ ## Adding JCR Data
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+
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+ 1. Obtain JCR Excel file from Clarivate or authorized source
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+ 2. Place in `src/scitex/scholar/data/impact_factor/JCR_IF_YYYY.xlsx`
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+ 3. Build database (optional - will auto-build if needed):
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+ ```python
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+ from scitex.scholar.impact_factor.jcr import build_database
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+ build_database("JCR_IF_2024.xlsx")
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+ ```
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+
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+ ## File Naming Convention
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+
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+ - Excel: `JCR_IF_YYYY.xlsx` (e.g., JCR_IF_2024.xlsx)
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+ - Database: `JCR_IF_YYYY.db` (e.g., JCR_IF_2024.db)
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+ - Symlink: `impact_factor.db` → points to current year DB
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+
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+ ## Legal Notice
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+
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+ JCR data is proprietary (Clarivate Analytics). Users are responsible for:
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+ - Obtaining data through authorized channels
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+ - Compliance with licensing terms
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+ - Not distributing data files
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+
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+ We provide only the code to use the data, not the data itself.