scikit-learn-intelex 2025.1.0__py311-none-manylinux_2_28_x86_64.whl

sklearnex/basic_statistics/incremental_basic_statistics.py

@@ -0,0 +1,345 @@
+# ==============================================================================
+# Copyright 2024 Intel Corporation
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+# ==============================================================================
+
+import numpy as np
+from sklearn.base import BaseEstimator
+from sklearn.utils import check_array, gen_batches
+from sklearn.utils.validation import _check_sample_weight
+
+from daal4py.sklearn._n_jobs_support import control_n_jobs
+from daal4py.sklearn._utils import sklearn_check_version
+from onedal.basic_statistics import (
+    IncrementalBasicStatistics as onedal_IncrementalBasicStatistics,
+)
+
+from .._device_offload import dispatch
+from .._utils import IntelEstimator, PatchingConditionsChain
+
+if sklearn_check_version("1.2"):
+    from sklearn.utils._param_validation import Interval, StrOptions
+
+import numbers
+import warnings
+
+if sklearn_check_version("1.6"):
+    from sklearn.utils.validation import validate_data
+else:
+    validate_data = BaseEstimator._validate_data
+
+
+@control_n_jobs(decorated_methods=["partial_fit", "_onedal_finalize_fit"])
+class IncrementalBasicStatistics(IntelEstimator, BaseEstimator):
+    """
+    Calculates basic statistics on the given data, allows for computation when the data are split into
+    batches. The user can use ``partial_fit`` method to provide a single batch of data or use the ``fit`` method to provide
+    the entire dataset.
+
+    Parameters
+    ----------
+    result_options: string or list, default='all'
+        List of statistics to compute
+
+    batch_size : int, default=None
+        The number of samples to use for each batch. Only used when calling
+        ``fit``. If ``batch_size`` is ``None``, then ``batch_size``
+        is inferred from the data and set to ``5 * n_features``.
+
+    Attributes
+    ----------
+        min_ : ndarray of shape (n_features,)
+            Minimum of each feature over all samples.
+
+        max_ : ndarray of shape (n_features,)
+            Maximum of each feature over all samples.
+
+        sum_ : ndarray of shape (n_features,)
+            Sum of each feature over all samples.
+
+        mean_ : ndarray of shape (n_features,)
+            Mean of each feature over all samples.
+
+        variance_ : ndarray of shape (n_features,)
+            Variance of each feature over all samples.
+
+        variation_ : ndarray of shape (n_features,)
+            Variation of each feature over all samples.
+
+        sum_squares_ : ndarray of shape (n_features,)
+            Sum of squares for each feature over all samples.
+
+        standard_deviation_ : ndarray of shape (n_features,)
+            Standard deviation of each feature over all samples.
+
+        sum_squares_centered_ : ndarray of shape (n_features,)
+            Centered sum of squares for each feature over all samples.
+
+        second_order_raw_moment_ : ndarray of shape (n_features,)
+            Second order moment of each feature over all samples.
+
+        n_samples_seen_ : int
+            The number of samples processed by the estimator. Will be reset on
+            new calls to ``fit``, but increments across ``partial_fit`` calls.
+
+        batch_size_ : int
+            Inferred batch size from ``batch_size``.
+
+        n_features_in_ : int
+            Number of features seen during ``fit`` or  ``partial_fit``.
+
+    Note
+    ----
+    Attribute exists only if corresponding result option has been provided.
+
+    Note
+    ----
+    Names of attributes without the trailing underscore are
+    supported currently but deprecated in 2025.1 and will be removed in 2026.0
+
+    Examples
+    --------
+    >>> import numpy as np
+    >>> from sklearnex.basic_statistics import IncrementalBasicStatistics
+    >>> incbs = IncrementalBasicStatistics(batch_size=1)
+    >>> X = np.array([[1, 2], [3, 4]])
+    >>> incbs.partial_fit(X[:1])
+    >>> incbs.partial_fit(X[1:])
+    >>> incbs.sum_
+    np.array([4., 6.])
+    >>> incbs.min_
+    np.array([1., 2.])
+    >>> incbs.fit(X)
+    >>> incbs.sum_
+    np.array([4., 6.])
+    >>> incbs.max_
+    np.array([3., 4.])
+    """
+
+    _onedal_incremental_basic_statistics = staticmethod(onedal_IncrementalBasicStatistics)
+
+    if sklearn_check_version("1.2"):
+        _parameter_constraints: dict = {
+            "result_options": [
+                StrOptions(
+                    {
+                        "all",
+                        "min",
+                        "max",
+                        "sum",
+                        "mean",
+                        "variance",
+                        "variation",
+                        "sum_squares",
+                        "standard_deviation",
+                        "sum_squares_centered",
+                        "second_order_raw_moment",
+                    }
+                ),
+                list,
+            ],
+            "batch_size": [Interval(numbers.Integral, 1, None, closed="left"), None],
+        }
+
+    def __init__(self, result_options="all", batch_size=None):
+        if result_options == "all":
+            self.result_options = (
+                self._onedal_incremental_basic_statistics.get_all_result_options()
+            )
+        else:
+            self.result_options = result_options
+        self._need_to_finalize = False
+        self.batch_size = batch_size
+
+    def _onedal_supported(self, method_name, *data):
+        patching_status = PatchingConditionsChain(
+            f"sklearn.basic_statistics.{self.__class__.__name__}.{method_name}"
+        )
+        return patching_status
+
+    _onedal_cpu_supported = _onedal_supported
+    _onedal_gpu_supported = _onedal_supported
+
+    def _get_onedal_result_options(self, options):
+        if isinstance(options, list):
+            onedal_options = "|".join(self.result_options)
+        else:
+            onedal_options = options
+        assert isinstance(onedal_options, str)
+        return options
+
+    def _onedal_finalize_fit(self, queue=None):
+        assert hasattr(self, "_onedal_estimator")
+        self._onedal_estimator.finalize_fit(queue=queue)
+        self._need_to_finalize = False
+
+    def _onedal_partial_fit(self, X, sample_weight=None, queue=None, check_input=True):
+        first_pass = not hasattr(self, "n_samples_seen_") or self.n_samples_seen_ == 0
+
+        if check_input:
+            if sklearn_check_version("1.0"):
+                X = validate_data(
+                    self,
+                    X,
+                    dtype=[np.float64, np.float32],
+                    reset=first_pass,
+                )
+            else:
+                X = check_array(
+                    X,
+                    dtype=[np.float64, np.float32],
+                )
+
+        if sample_weight is not None:
+            sample_weight = _check_sample_weight(sample_weight, X)
+
+        if first_pass:
+            self.n_samples_seen_ = X.shape[0]
+            self.n_features_in_ = X.shape[1]
+        else:
+            self.n_samples_seen_ += X.shape[0]
+
+        onedal_params = {
+            "result_options": self._get_onedal_result_options(self.result_options)
+        }
+        if not hasattr(self, "_onedal_estimator"):
+            self._onedal_estimator = self._onedal_incremental_basic_statistics(
+                **onedal_params
+            )
+        self._onedal_estimator.partial_fit(X, weights=sample_weight, queue=queue)
+        self._need_to_finalize = True
+
+    def _onedal_fit(self, X, sample_weight=None, queue=None):
+        if sklearn_check_version("1.2"):
+            self._validate_params()
+
+        if sklearn_check_version("1.0"):
+            X = validate_data(self, X, dtype=[np.float64, np.float32])
+        else:
+            X = check_array(X, dtype=[np.float64, np.float32])
+
+        if sample_weight is not None:
+            sample_weight = _check_sample_weight(sample_weight, X)
+
+        n_samples, n_features = X.shape
+        if self.batch_size is None:
+            self.batch_size_ = 5 * n_features
+        else:
+            self.batch_size_ = self.batch_size
+
+        self.n_samples_seen_ = 0
+        if hasattr(self, "_onedal_estimator"):
+            self._onedal_estimator._reset()
+
+        for batch in gen_batches(X.shape[0], self.batch_size_):
+            X_batch = X[batch]
+            weights_batch = sample_weight[batch] if sample_weight is not None else None
+            self._onedal_partial_fit(
+                X_batch, weights_batch, queue=queue, check_input=False
+            )
+
+        self.n_features_in_ = X.shape[1]
+
+        self._onedal_finalize_fit(queue=queue)
+
+        return self
+
+    def __getattr__(self, attr):
+        result_options = self.__dict__["result_options"]
+        sattr = attr.removesuffix("_")
+        is_statistic_attr = (
+            isinstance(result_options, str) and (sattr == result_options)
+        ) or (isinstance(result_options, list) and (sattr in result_options))
+        if is_statistic_attr:
+            if self._need_to_finalize:
+                self._onedal_finalize_fit()
+            if sattr == attr:
+                warnings.warn(
+                    "Result attributes without a trailing underscore were deprecated in version 2025.1 and will be removed in 2026.0"
+                )
+            return getattr(self._onedal_estimator, sattr)
+        if attr in self.__dict__:
+            return self.__dict__[attr]
+
+        raise AttributeError(
+            f"'{self.__class__.__name__}' object has no attribute '{attr}'"
+        )
+
+    def partial_fit(self, X, sample_weight=None, check_input=True):
+        """Incremental fit with X. All of X is processed as a single batch.
+
+        Parameters
+        ----------
+        X : array-like of shape (n_samples, n_features)
+            Data for compute, where ``n_samples`` is the number of samples and
+            ``n_features`` is the number of features.
+
+        y : Ignored
+            Not used, present for API consistency by convention.
+
+        sample_weight : array-like of shape (n_samples,), default=None
+            Weights for compute weighted statistics, where ``n_samples`` is the number of samples.
+
+        check_input : bool, default=True
+            Run ``check_array`` on X.
+
+        Returns
+        -------
+        self : object
+            Returns the instance itself.
+        """
+        dispatch(
+            self,
+            "partial_fit",
+            {
+                "onedal": self.__class__._onedal_partial_fit,
+                "sklearn": None,
+            },
+            X,
+            sample_weight,
+            check_input=check_input,
+        )
+        return self
+
+    def fit(self, X, y=None, sample_weight=None):
+        """Calculate statistics of X using minibatches of size batch_size.
+
+        Parameters
+        ----------
+        X : array-like of shape (n_samples, n_features)
+            Data for compute, where ``n_samples`` is the number of samples and
+            ``n_features`` is the number of features.
+
+        y : Ignored
+            Not used, present for API consistency by convention.
+
+        sample_weight : array-like of shape (n_samples,), default=None
+            Weights for compute weighted statistics, where ``n_samples`` is the number of samples.
+
+        Returns
+        -------
+        self : object
+            Returns the instance itself.
+        """
+        dispatch(
+            self,
+            "fit",
+            {
+                "onedal": self.__class__._onedal_fit,
+                "sklearn": None,
+            },
+            X,
+            sample_weight,
+        )
+        return self

sklearnex/basic_statistics/tests/test_basic_statistics.py

@@ -0,0 +1,270 @@
+# ==============================================================================
+# Copyright 2023 Intel Corporation
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+# ==============================================================================
+
+import numpy as np
+import pytest
+from numpy.testing import assert_allclose
+
+from daal4py.sklearn._utils import daal_check_version
+from onedal.basic_statistics.tests.test_basic_statistics import (
+    expected_max,
+    expected_mean,
+    expected_sum,
+    options_and_tests,
+)
+from onedal.tests.utils._dataframes_support import (
+    _convert_to_dataframe,
+    get_dataframes_and_queues,
+)
+from sklearnex.basic_statistics import BasicStatistics
+
+
+@pytest.mark.parametrize("dataframe,queue", get_dataframes_and_queues())
+def test_sklearnex_import_basic_statistics(dataframe, queue):
+    X = np.array([[0, 0], [1, 1]])
+    X_df = _convert_to_dataframe(X, sycl_queue=queue, target_df=dataframe)
+
+    weights = np.array([1, 0.5])
+    weights_df = _convert_to_dataframe(weights, sycl_queue=queue, target_df=dataframe)
+
+    result = BasicStatistics().fit(X_df)
+
+    expected_mean = np.array([0.5, 0.5])
+    expected_min = np.array([0, 0])
+    expected_max = np.array([1, 1])
+
+    assert_allclose(expected_mean, result.mean)
+    assert_allclose(expected_max, result.max)
+    assert_allclose(expected_min, result.min)
+
+    result = BasicStatistics().fit(X_df, sample_weight=weights_df)
+
+    expected_weighted_mean = np.array([0.25, 0.25])
+    expected_weighted_min = np.array([0, 0])
+    expected_weighted_max = np.array([0.5, 0.5])
+
+    assert_allclose(expected_weighted_mean, result.mean)
+    assert_allclose(expected_weighted_min, result.min)
+    assert_allclose(expected_weighted_max, result.max)
+
+
+@pytest.mark.parametrize("dataframe,queue", get_dataframes_and_queues())
+@pytest.mark.parametrize("weighted", [True, False])
+@pytest.mark.parametrize("dtype", [np.float32, np.float64])
+def test_multiple_options_on_gold_data(dataframe, queue, weighted, dtype):
+    X = np.array([[0, 0], [1, 1]])
+    X = X.astype(dtype=dtype)
+    X_df = _convert_to_dataframe(X, sycl_queue=queue, target_df=dataframe)
+    if weighted:
+        weights = np.array([1, 0.5])
+        weights = weights.astype(dtype=dtype)
+        weights_df = _convert_to_dataframe(weights, sycl_queue=queue, target_df=dataframe)
+    basicstat = BasicStatistics()
+
+    if weighted:
+        result = basicstat.fit(X_df, sample_weight=weights_df)
+    else:
+        result = basicstat.fit(X_df)
+
+    if weighted:
+        expected_weighted_mean = np.array([0.25, 0.25])
+        expected_weighted_min = np.array([0, 0])
+        expected_weighted_max = np.array([0.5, 0.5])
+        assert_allclose(expected_weighted_mean, result.mean)
+        assert_allclose(expected_weighted_max, result.max)
+        assert_allclose(expected_weighted_min, result.min)
+    else:
+        expected_mean = np.array([0.5, 0.5])
+        expected_min = np.array([0, 0])
+        expected_max = np.array([1, 1])
+        assert_allclose(expected_mean, result.mean)
+        assert_allclose(expected_max, result.max)
+        assert_allclose(expected_min, result.min)
+
+
+@pytest.mark.parametrize("dataframe,queue", get_dataframes_and_queues())
+@pytest.mark.parametrize("option", options_and_tests)
+@pytest.mark.parametrize("row_count", [100, 1000])
+@pytest.mark.parametrize("column_count", [10, 100])
+@pytest.mark.parametrize("weighted", [True, False])
+@pytest.mark.parametrize("dtype", [np.float32, np.float64])
+def test_single_option_on_random_data(
+    dataframe, queue, option, row_count, column_count, weighted, dtype
+):
+    result_option, function, tols = option
+    fp32tol, fp64tol = tols
+    seed = 77
+    gen = np.random.default_rng(seed)
+    X = gen.uniform(low=-0.3, high=+0.7, size=(row_count, column_count))
+    X = X.astype(dtype=dtype)
+    X_df = _convert_to_dataframe(X, sycl_queue=queue, target_df=dataframe)
+    if weighted:
+        weights = gen.uniform(low=-0.5, high=1.0, size=row_count)
+        weights = weights.astype(dtype=dtype)
+        weights_df = _convert_to_dataframe(weights, sycl_queue=queue, target_df=dataframe)
+    basicstat = BasicStatistics(result_options=result_option)
+
+    if weighted:
+        result = basicstat.fit(X_df, sample_weight=weights_df)
+    else:
+        result = basicstat.fit(X_df)
+
+    res = getattr(result, result_option)
+    if weighted:
+        weighted_data = np.diag(weights) @ X
+        gtr = function(weighted_data)
+    else:
+        gtr = function(X)
+
+    tol = fp32tol if res.dtype == np.float32 else fp64tol
+    assert_allclose(gtr, res, atol=tol)
+
+
+@pytest.mark.parametrize("dataframe,queue", get_dataframes_and_queues())
+@pytest.mark.parametrize("row_count", [100, 1000])
+@pytest.mark.parametrize("column_count", [10, 100])
+@pytest.mark.parametrize("weighted", [True, False])
+@pytest.mark.parametrize("dtype", [np.float32, np.float64])
+def test_multiple_options_on_random_data(
+    dataframe, queue, row_count, column_count, weighted, dtype
+):
+    seed = 77
+    gen = np.random.default_rng(seed)
+    X = gen.uniform(low=-0.3, high=+0.7, size=(row_count, column_count))
+    X = X.astype(dtype=dtype)
+    X_df = _convert_to_dataframe(X, sycl_queue=queue, target_df=dataframe)
+    if weighted:
+        weights = gen.uniform(low=-0.5, high=1.0, size=row_count)
+        weights = weights.astype(dtype=dtype)
+        weights_df = _convert_to_dataframe(weights, sycl_queue=queue, target_df=dataframe)
+    basicstat = BasicStatistics(result_options=["mean", "max", "sum"])
+
+    if weighted:
+        result = basicstat.fit(X_df, sample_weight=weights_df)
+    else:
+        result = basicstat.fit(X_df)
+
+    res_mean, res_max, res_sum = result.mean, result.max, result.sum
+    if weighted:
+        weighted_data = np.diag(weights) @ X
+        gtr_mean, gtr_max, gtr_sum = (
+            expected_mean(weighted_data),
+            expected_max(weighted_data),
+            expected_sum(weighted_data),
+        )
+    else:
+        gtr_mean, gtr_max, gtr_sum = (
+            expected_mean(X),
+            expected_max(X),
+            expected_sum(X),
+        )
+
+    tol = 5e-4 if res_mean.dtype == np.float32 else 1e-7
+    assert_allclose(gtr_mean, res_mean, atol=tol)
+    assert_allclose(gtr_max, res_max, atol=tol)
+    assert_allclose(gtr_sum, res_sum, atol=tol)
+
+
+@pytest.mark.parametrize("dataframe,queue", get_dataframes_and_queues())
+@pytest.mark.parametrize("row_count", [100, 1000])
+@pytest.mark.parametrize("column_count", [10, 100])
+@pytest.mark.parametrize("weighted", [True, False])
+@pytest.mark.parametrize("dtype", [np.float32, np.float64])
+def test_all_option_on_random_data(
+    dataframe, queue, row_count, column_count, weighted, dtype
+):
+    seed = 77
+    gen = np.random.default_rng(seed)
+    X = gen.uniform(low=-0.3, high=+0.7, size=(row_count, column_count))
+    X = X.astype(dtype=dtype)
+    X_df = _convert_to_dataframe(X, sycl_queue=queue, target_df=dataframe)
+    if weighted:
+        weights = gen.uniform(low=-0.5, high=+1.0, size=row_count)
+        weights = weights.astype(dtype=dtype)
+        weights_df = _convert_to_dataframe(weights, sycl_queue=queue, target_df=dataframe)
+    basicstat = BasicStatistics(result_options="all")
+
+    if weighted:
+        result = basicstat.fit(X_df, sample_weight=weights_df)
+    else:
+        result = basicstat.fit(X_df)
+
+    if weighted:
+        weighted_data = np.diag(weights) @ X
+
+    for option in options_and_tests:
+        result_option, function, tols = option
+        fp32tol, fp64tol = tols
+        res = getattr(result, result_option)
+        if weighted:
+            gtr = function(weighted_data)
+        else:
+            gtr = function(X)
+        tol = fp32tol if res.dtype == np.float32 else fp64tol
+        assert_allclose(gtr, res, atol=tol)
+
+
+@pytest.mark.parametrize("dataframe,queue", get_dataframes_and_queues())
+@pytest.mark.parametrize("option", options_and_tests)
+@pytest.mark.parametrize("data_size", [100, 1000])
+@pytest.mark.parametrize("weighted", [True, False])
+@pytest.mark.parametrize("dtype", [np.float32, np.float64])
+def test_1d_input_on_random_data(dataframe, queue, option, data_size, weighted, dtype):
+    result_option, function, tols = option
+    fp32tol, fp64tol = tols
+    seed = 77
+    gen = np.random.default_rng(seed)
+    X = gen.uniform(low=-0.3, high=+0.7, size=data_size)
+    X = X.astype(dtype=dtype)
+    X_df = _convert_to_dataframe(X, sycl_queue=queue, target_df=dataframe)
+    if weighted:
+        weights = gen.uniform(low=-0.5, high=1.0, size=data_size)
+        weights = weights.astype(dtype=dtype)
+        weights_df = _convert_to_dataframe(weights, sycl_queue=queue, target_df=dataframe)
+    basicstat = BasicStatistics(result_options=result_option)
+
+    if weighted:
+        result = basicstat.fit(X_df, sample_weight=weights_df)
+    else:
+        result = basicstat.fit(X_df)
+
+    res = getattr(result, result_option)
+    if weighted:
+        weighted_data = weights * X
+        gtr = function(weighted_data)
+    else:
+        gtr = function(X)
+
+    tol = fp32tol if res.dtype == np.float32 else fp64tol
+    assert_allclose(gtr, res, atol=tol)
+
+
+def test_warning():
+    basicstat = BasicStatistics("all")
+    data = np.array([0, 1])
+
+    basicstat.fit(data)
+    for i in basicstat._onedal_estimator.get_all_result_options():
+        with pytest.warns(
+            UserWarning,
+            match="Result attributes without a trailing underscore were deprecated in version 2025.1 and will be removed in 2026.0",
+        ) as warn_record:
+            getattr(basicstat, i)
+
+        if daal_check_version((2026, "P", 0)):
+            assert len(warn_record) == 0, i
+        else:
+            assert len(warn_record) == 1, i