rapidtide 2.9.6__py3-none-any.whl → 3.1.3__py3-none-any.whl

rapidtide/tests/test_fullrunhappy_v4.py

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-#   Copyright 2016-2024 Blaise Frederick
+#   Copyright 2016-2025 Blaise Frederick
 #
 #   Licensed under the Apache License, Version 2.0 (the "License");
 #   you may not use this file except in compliance with the License.
@@ -24,25 +24,44 @@ import rapidtide.workflows.happy as happy_workflow
 import rapidtide.workflows.happy_parser as happy_parser
 from rapidtide.tests.utils import get_examples_path, get_test_temp_path
 
+try:
+    import tensorflow as tf
+
+    tensorflowexists = True
+except ImportError:
+    tensorflowexists = False
+
+
+def test_fullrunhappy_v4(debug=False, local=False, displayplots=False):
+    # set input and output directories
+    if local:
+        exampleroot = "../data/examples/src"
+        testtemproot = "./tmp"
+    else:
+        exampleroot = get_examples_path()
+        testtemproot = get_test_temp_path()
 
-def test_fullrunhappy_v4(debug=False, displayplots=False):
     # run happy
     inputargs = [
-        os.path.join(get_examples_path(), "sub-HAPPYTEST.nii.gz"),
-        os.path.join(get_examples_path(), "sub-HAPPYTEST.json"),
-        os.path.join(get_test_temp_path(), "happyout4"),
-        "--estmask",
-        os.path.join(get_examples_path(), "sub-HAPPYTEST_smallmask.nii.gz"),
+        os.path.join(exampleroot, "sub-HAPPYTEST.nii.gz"),
+        os.path.join(exampleroot, "sub-HAPPYTEST.json"),
+        os.path.join(testtemproot, "happyout4"),
+        "--estweights",
+        os.path.join(exampleroot, "sub-HAPPYTEST_smallmask.nii.gz"),
         "--projmask",
-        os.path.join(get_examples_path(), "sub-HAPPYTEST_smallmask.nii.gz"),
+        os.path.join(exampleroot, "sub-HAPPYTEST_smallmask.nii.gz"),
         "--mklthreads",
         "-1",
-        "--model",
-        "model_revised",
+        "--useoldvesselmethod",
+        "--motionfile",
+        os.path.join(exampleroot, "sub-HAPPYTEST_mcf.par"),
+        "--aliasedcorrelation",
     ]
+    if tensorflowexists:
+        inputargs.append("--usetensorflow")
     happy_workflow.happy_main(happy_parser.process_args(inputargs=inputargs))
 
 
 if __name__ == "__main__":
     mpl.use("TkAgg")
-    test_fullrunhappy_v4(debug=True, displayplots=True)
+    test_fullrunhappy_v4(debug=True, local=True, displayplots=True)

rapidtide/tests/test_fullrunhappy_v5.py

@@ -0,0 +1,62 @@
+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+#
+#   Copyright 2016-2025 Blaise Frederick
+#
+#   Licensed under the Apache License, Version 2.0 (the "License");
+#   you may not use this file except in compliance with the License.
+#   You may obtain a copy of the License at
+#
+#       http://www.apache.org/licenses/LICENSE-2.0
+#
+#   Unless required by applicable law or agreed to in writing, software
+#   distributed under the License is distributed on an "AS IS" BASIS,
+#   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+#   See the License for the specific language governing permissions and
+#   limitations under the License.
+#
+#
+import os
+
+import matplotlib as mpl
+
+import rapidtide.workflows.happy as happy_workflow
+import rapidtide.workflows.happy_parser as happy_parser
+from rapidtide.tests.utils import get_examples_path, get_test_temp_path
+
+
+def test_fullrunhappy_v4(debug=False, local=False, displayplots=False):
+    # set input and output directories
+    if local:
+        exampleroot = "../data/examples/src"
+        testtemproot = "./tmp"
+    else:
+        exampleroot = get_examples_path()
+        testtemproot = get_test_temp_path()
+
+    # run happy
+    inputargs = [
+        os.path.join(exampleroot, "sub-HAPPYTEST.nii.gz"),
+        os.path.join(exampleroot, "sub-HAPPYTEST.json"),
+        os.path.join(testtemproot, "happyout5"),
+        "--motionfile",
+        os.path.join(exampleroot, "sub-HAPPYTEST_mcf.par"),
+        "--nomotderiv",
+        "--nomotorthogonalize",
+        "--motfiltorder",
+        "2",
+        "--numskip",
+        "5",
+        "--motskip",
+        "5",
+        "--motionhp",
+        "0.01",
+        "--motionlp",
+        "2.0",
+    ]
+    happy_workflow.happy_main(happy_parser.process_args(inputargs=inputargs))
+
+
+if __name__ == "__main__":
+    mpl.use("TkAgg")
+    test_fullrunhappy_v4(debug=True, local=True, displayplots=True)

rapidtide/tests/test_fullrunrapidtide_v1.py

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-#   Copyright 2016-2024 Blaise Frederick
+#   Copyright 2016-2025 Blaise Frederick
 #
 #   Licensed under the Apache License, Version 2.0 (the "License");
 #   you may not use this file except in compliance with the License.
@@ -26,26 +26,80 @@ import rapidtide.workflows.rapidtide_parser as rapidtide_parser
 from rapidtide.tests.utils import get_examples_path, get_test_temp_path
 
 
-def test_fullrunrapidtide_v1(debug=False, displayplots=False):
+def test_fullrunrapidtide_v1(debug=False, local=False, displayplots=False):
+    # set input and output directories
+    if local:
+        exampleroot = "../data/examples/src"
+        testtemproot = "./tmp"
+    else:
+        exampleroot = get_examples_path()
+        testtemproot = get_test_temp_path()
+
     # run rapidtide
     inputargs = [
-        os.path.join(get_examples_path(), "sub-RAPIDTIDETEST.nii.gz"),
-        os.path.join(get_test_temp_path(), "sub-RAPIDTIDETEST1"),
+        os.path.join(exampleroot, "sub-RAPIDTIDETEST.nii.gz"),
+        os.path.join(testtemproot, "sub-RAPIDTIDETEST1"),
+        "--spatialfilt",
+        "2",
+        "--simcalcrange",
+        "4",
+        "-1",
+        "--nprocs",
+        "-1",
+        "--passes",
+        "2",
+        "--despecklepasses",
+        "3",
+        "--delaypatchthresh",
+        "4.0",
+    ]
+    rapidtide_workflow.rapidtide_main(rapidtide_parser.process_args(inputargs=inputargs))
+    rapidtide_quality.qualitycheck(os.path.join(testtemproot, "sub-RAPIDTIDETEST1"))
+
+    # test fixval
+    inputargs = [
+        os.path.join(exampleroot, "sub-RAPIDTIDETEST.nii.gz"),
+        os.path.join(testtemproot, "sub-RAPIDTIDETEST1_fixval"),
         "--spatialfilt",
         "2",
-        "--numtozero",
+        "--simcalcrange",
         "4",
+        "-1",
+        "--nprocs",
+        "-1",
+        "--passes",
+        "1",
+        "--despecklepasses",
+        "3",
+        "--nodenoise",
+        "--norefinedelay",
+        "--initialdelay",
+        "0.0",
+    ]
+    rapidtide_workflow.rapidtide_main(rapidtide_parser.process_args(inputargs=inputargs))
+
+    # test fixmap
+    inputargs = [
+        os.path.join(exampleroot, "sub-RAPIDTIDETEST.nii.gz"),
+        os.path.join(testtemproot, "sub-RAPIDTIDETEST1_fixmap"),
+        "--spatialfilt",
+        "2",
+        "--simcalcrange",
+        "4",
+        "-1",
         "--nprocs",
         "-1",
         "--passes",
         "1",
         "--despecklepasses",
         "3",
+        "--nodenoise",
+        "--initialdelay",
+        os.path.join(testtemproot, "sub-RAPIDTIDETEST1_desc-maxtime_map.nii.gz"),
     ]
     rapidtide_workflow.rapidtide_main(rapidtide_parser.process_args(inputargs=inputargs))
-    rapidtide_quality.qualitycheck(os.path.join(get_test_temp_path(), "sub-RAPIDTIDETEST1"))
 
 
 if __name__ == "__main__":
     mpl.use("TkAgg")
-    test_fullrunrapidtide_v1(debug=True, displayplots=True)
+    test_fullrunrapidtide_v1(debug=True, local=True, displayplots=True)

rapidtide/tests/test_fullrunrapidtide_v2.py

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-#   Copyright 2016-2024 Blaise Frederick
+#   Copyright 2016-2025 Blaise Frederick
 #
 #   Licensed under the Apache License, Version 2.0 (the "License");
 #   you may not use this file except in compliance with the License.
@@ -25,27 +25,35 @@ import rapidtide.workflows.rapidtide_parser as rapidtide_parser
 from rapidtide.tests.utils import get_examples_path, get_test_temp_path
 
 
-def test_fullrunrapidtide_v2(debug=False, displayplots=False):
+def test_fullrunrapidtide_v2(debug=False, local=False, displayplots=False):
+    # set input and output directories
+    if local:
+        exampleroot = "../data/examples/src"
+        testtemproot = "./tmp"
+    else:
+        exampleroot = get_examples_path()
+        testtemproot = get_test_temp_path()
+
     # run rapidtide
     inputargs = [
-        os.path.join(get_examples_path(), "sub-RAPIDTIDETEST.nii.gz"),
-        os.path.join(get_test_temp_path(), "sub-RAPIDTIDETEST2"),
+        os.path.join(exampleroot, "sub-RAPIDTIDETEST.nii.gz"),
+        os.path.join(testtemproot, "sub-RAPIDTIDETEST2"),
         "--tincludemask",
-        os.path.join(get_examples_path(), "tmask3.txt"),
+        os.path.join(exampleroot, "tmask3.txt"),
         "--corrmask",
-        os.path.join(get_examples_path(), "sub-RAPIDTIDETEST_restrictedmask.nii.gz"),
+        os.path.join(exampleroot, "sub-RAPIDTIDETEST_restrictedmask.nii.gz"),
         "--globalmeaninclude",
-        os.path.join(get_examples_path(), "sub-RAPIDTIDETEST_brainmask.nii.gz"),
+        os.path.join(exampleroot, "sub-RAPIDTIDETEST_brainmask.nii.gz"),
         "--globalmeanexclude",
-        os.path.join(get_examples_path(), "sub-RAPIDTIDETEST_nullmask.nii.gz"),
+        os.path.join(exampleroot, "sub-RAPIDTIDETEST_nullmask.nii.gz"),
         "--refineinclude",
-        os.path.join(get_examples_path(), "sub-RAPIDTIDETEST_brainmask.nii.gz"),
+        os.path.join(exampleroot, "sub-RAPIDTIDETEST_brainmask.nii.gz"),
         "--refineexclude",
-        os.path.join(get_examples_path(), "sub-RAPIDTIDETEST_nullmask.nii.gz"),
+        os.path.join(exampleroot, "sub-RAPIDTIDETEST_nullmask.nii.gz"),
         "--offsetinclude",
-        os.path.join(get_examples_path(), "sub-RAPIDTIDETEST_brainmask.nii.gz"),
+        os.path.join(exampleroot, "sub-RAPIDTIDETEST_brainmask.nii.gz"),
         "--offsetexclude",
-        os.path.join(get_examples_path(), "sub-RAPIDTIDETEST_nullmask.nii.gz"),
+        os.path.join(exampleroot, "sub-RAPIDTIDETEST_nullmask.nii.gz"),
         "--spatialfilt",
         "-1",
         "--savelags",
@@ -56,9 +64,11 @@ def test_fullrunrapidtide_v2(debug=False, displayplots=False):
         "-1",
         "--saveintermediatemaps",
         "--bipolar",
+        "--norefinedelay",
         "--outputlevel",
         "max",
         "--calccoherence",
+        "--cleanrefined",
         "--dispersioncalc",
         "--nprocs",
         "1",
@@ -73,7 +83,9 @@ def test_fullrunrapidtide_v2(debug=False, displayplots=False):
         "--refineprenorm",
         "var",
         "--motionfile",
-        os.path.join(get_examples_path(), "fakemotion.par"),
+        os.path.join(exampleroot, "fakemotion.par"),
+        "--denoisesourcefile",
+        os.path.join(exampleroot, "sub-RAPIDTIDETEST.nii.gz"),
     ]
     if debug:
         print(inputargs)
@@ -82,4 +94,4 @@ def test_fullrunrapidtide_v2(debug=False, displayplots=False):
 
 if __name__ == "__main__":
     mpl.use("TkAgg")
-    test_fullrunrapidtide_v2(debug=True, displayplots=True)
+    test_fullrunrapidtide_v2(debug=True, local=True, displayplots=True)

rapidtide/tests/test_fullrunrapidtide_v3.py

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-#   Copyright 2016-2024 Blaise Frederick
+#   Copyright 2016-2025 Blaise Frederick
 #
 #   Licensed under the Apache License, Version 2.0 (the "License");
 #   you may not use this file except in compliance with the License.
@@ -22,16 +22,25 @@ import matplotlib as mpl
 
 import rapidtide.workflows.rapidtide as rapidtide_workflow
 import rapidtide.workflows.rapidtide_parser as rapidtide_parser
+import rapidtide.workflows.retroregress as rapidtide_retroregress
 from rapidtide.tests.utils import get_examples_path, get_test_temp_path
 
 
-def test_fullrunrapidtide_v3(debug=False, displayplots=False):
+def test_fullrunrapidtide_v3(debug=False, local=False, displayplots=False):
+    # set input and output directories
+    if local:
+        exampleroot = "../data/examples/src"
+        testtemproot = "./tmp"
+    else:
+        exampleroot = get_examples_path()
+        testtemproot = get_test_temp_path()
+
     # run rapidtide
     inputargs = [
-        os.path.join(get_examples_path(), "sub-RAPIDTIDETEST.nii.gz"),
-        os.path.join(get_test_temp_path(), "sub-RAPIDTIDETEST3"),
+        os.path.join(exampleroot, "sub-RAPIDTIDETEST.nii.gz"),
+        os.path.join(testtemproot, "sub-RAPIDTIDETEST3"),
         "--corrmask",
-        os.path.join(get_examples_path(), "sub-RAPIDTIDETEST_restrictedmask.nii.gz:1"),
+        os.path.join(exampleroot, "sub-RAPIDTIDETEST_restrictedmask.nii.gz:1"),
         "--maxpasses",
         "2",
         "--numnull",
@@ -40,11 +49,12 @@ def test_fullrunrapidtide_v3(debug=False, displayplots=False):
         "pca",
         "--convergencethresh",
         "0.5",
-        "--noglm",
+        "--nodenoise",
         "--nprocs",
         "-1",
         "--similaritymetric",
         "mutualinfo",
+        "--norefinedelay",
         "--dpoutput",
         "--spcalculation",
         "--simcalcrange",
@@ -59,7 +69,7 @@ def test_fullrunrapidtide_v3(debug=False, displayplots=False):
         "R",
         "--regressor",
         os.path.join(
-            get_examples_path(),
+            exampleroot,
             "sub-RAPIDTIDETEST_desc-oversampledmovingregressor_timeseries.json:pass3",
         ),
     ]
@@ -67,7 +77,17 @@ def test_fullrunrapidtide_v3(debug=False, displayplots=False):
     #    "--cleanrefined",
     rapidtide_workflow.rapidtide_main(rapidtide_parser.process_args(inputargs=inputargs))
 
+    inputargs = [
+        os.path.join(exampleroot, "sub-RAPIDTIDETEST.nii.gz"),
+        os.path.join(testtemproot, "sub-RAPIDTIDETEST3"),
+        "--alternateoutput",
+        os.path.join(testtemproot, "onlyregressors"),
+        "--outputlevel",
+        "onlyregressors",
+    ]
+    rapidtide_retroregress.retroregress(rapidtide_retroregress.process_args(inputargs=inputargs))
+
 
 if __name__ == "__main__":
     mpl.use("TkAgg")
-    test_fullrunrapidtide_v3(debug=True, displayplots=True)
+    test_fullrunrapidtide_v3(debug=True, local=True, displayplots=True)

rapidtide/tests/test_fullrunrapidtide_v4.py

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-#   Copyright 2016-2024 Blaise Frederick
+#   Copyright 2016-2025 Blaise Frederick
 #
 #   Licensed under the Apache License, Version 2.0 (the "License");
 #   you may not use this file except in compliance with the License.
@@ -25,18 +25,26 @@ import rapidtide.workflows.rapidtide_parser as rapidtide_parser
 from rapidtide.tests.utils import get_examples_path, get_test_temp_path
 
 
-def test_fullrunrapidtide_v4(debug=False, displayplots=False):
+def test_fullrunrapidtide_v4(debug=False, local=False, displayplots=False):
+    # set input and output directories
+    if local:
+        exampleroot = "../data/examples/src"
+        testtemproot = "./tmp"
+    else:
+        exampleroot = get_examples_path()
+        testtemproot = get_test_temp_path()
+
     # run rapidtide
     inputargs = [
-        os.path.join(get_examples_path(), "sub-NIRSRAPIDTIDETEST.txt"),
-        os.path.join(get_test_temp_path(), "sub-NIRSRAPIDTIDETEST4"),
+        os.path.join(exampleroot, "sub-NIRSRAPIDTIDETEST.txt"),
+        os.path.join(testtemproot, "sub-NIRSRAPIDTIDETEST4"),
         "--globalmeaninclude",
-        os.path.join(get_examples_path(), "sub-NIRSRAPIDTIDETEST_mask.txt"),
+        os.path.join(exampleroot, "sub-NIRSRAPIDTIDETEST_mask.txt"),
         "--nirs",
         "--datatstep",
         "0.2560",
-        "--globalmaskmethod",
-        "variance",
+        "--dataiszeromean",
+        "--norefinedelay",
         "--despecklepasses",
         "0",
         "--numnull",
@@ -58,4 +66,4 @@ def test_fullrunrapidtide_v4(debug=False, displayplots=False):
 
 if __name__ == "__main__":
     mpl.use("TkAgg")
-    test_fullrunrapidtide_v4(debug=True, displayplots=True)
+    test_fullrunrapidtide_v4(debug=True, local=True, displayplots=True)

rapidtide/tests/test_fullrunrapidtide_v5.py

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-#   Copyright 2016-2024 Blaise Frederick
+#   Copyright 2016-2025 Blaise Frederick
 #
 #   Licensed under the Apache License, Version 2.0 (the "License");
 #   you may not use this file except in compliance with the License.
@@ -25,18 +25,27 @@ import rapidtide.workflows.rapidtide_parser as rapidtide_parser
 from rapidtide.tests.utils import get_examples_path, get_test_temp_path
 
 
-def test_fullrunrapidtide_v5(debug=False, displayplots=False):
+def test_fullrunrapidtide_v5(debug=False, local=False, displayplots=False):
+    # set input and output directories
+    if local:
+        exampleroot = "../data/examples/src"
+        testtemproot = "./tmp"
+    else:
+        exampleroot = get_examples_path()
+        testtemproot = get_test_temp_path()
+
     # run rapidtide
     inputargs = [
-        os.path.join(get_examples_path(), "sub-RAPIDTIDETEST_cifti.ptseries.nii"),
-        os.path.join(get_test_temp_path(), "sub-RAPIDTIDETEST5"),
+        os.path.join(exampleroot, "sub-RAPIDTIDETEST_cifti.ptseries.nii"),
+        os.path.join(testtemproot, "sub-RAPIDTIDETEST5"),
         "--nprocs",
         "-1",
         "--passes",
         "2",
         "--numnull",
-        "0",
+        "10000",
         "--pickleft",
+        "--norefinedelay",
         "--refineprenorm",
         "None",
     ]
@@ -45,4 +54,4 @@ def test_fullrunrapidtide_v5(debug=False, displayplots=False):
 
 if __name__ == "__main__":
     mpl.use("TkAgg")
-    test_fullrunrapidtide_v5(debug=True, displayplots=True)
+    test_fullrunrapidtide_v5(debug=True, local=True, displayplots=True)

rapidtide/tests/test_fullrunrapidtide_v6.py

@@ -0,0 +1,142 @@
+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+#
+#   Copyright 2016-2025 Blaise Frederick
+#
+#   Licensed under the Apache License, Version 2.0 (the "License");
+#   you may not use this file except in compliance with the License.
+#   You may obtain a copy of the License at
+#
+#       http://www.apache.org/licenses/LICENSE-2.0
+#
+#   Unless required by applicable law or agreed to in writing, software
+#   distributed under the License is distributed on an "AS IS" BASIS,
+#   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+#   See the License for the specific language governing permissions and
+#   limitations under the License.
+#
+#
+import os
+
+import matplotlib as mpl
+
+import rapidtide.io as tide_io
+import rapidtide.workflows.rapidtide as rapidtide_workflow
+import rapidtide.workflows.rapidtide_parser as rapidtide_parser
+import rapidtide.workflows.retroregress as rapidtide_retroregress
+from rapidtide.tests.utils import get_examples_path, get_test_temp_path
+
+
+def test_fullrunrapidtide_v6(debug=False, local=False, displayplots=False):
+    # set input and output directories
+    if local:
+        exampleroot = "../data/examples/src"
+        testtemproot = "./tmp"
+    else:
+        exampleroot = get_examples_path()
+        testtemproot = get_test_temp_path()
+
+    # run rapidtide
+    inputargs = [
+        os.path.join(exampleroot, "sub-RAPIDTIDETEST.nii.gz"),
+        os.path.join(testtemproot, "sub-RAPIDTIDETEST6"),
+        "--spatialfilt",
+        "2",
+        "--simcalcrange",
+        "4",
+        "-1",
+        "--nprocs",
+        "-1",
+        "--passes",
+        "1",
+        "--despecklepasses",
+        "3",
+        "--regressderivs",
+        "0",
+        "--delaypatchthresh",
+        "4.0",
+        "--outputlevel",
+        "max",
+    ]
+    rapidtide_workflow.rapidtide_main(rapidtide_parser.process_args(inputargs=inputargs))
+
+    inputargs = [
+        os.path.join(exampleroot, "sub-RAPIDTIDETEST.nii.gz"),
+        os.path.join(testtemproot, "sub-RAPIDTIDETEST6"),
+        "--alternateoutput",
+        os.path.join(testtemproot, "2deriv"),
+        "--nprocs",
+        "-1",
+        "--regressderivs",
+        "2",
+        "--makepseudofile",
+        "--outputlevel",
+        "max",
+    ]
+    rapidtide_retroregress.retroregress(rapidtide_retroregress.process_args(inputargs=inputargs))
+
+    inputargs = [
+        os.path.join(exampleroot, "sub-RAPIDTIDETEST.nii.gz"),
+        os.path.join(testtemproot, "sub-RAPIDTIDETEST6"),
+        "--alternateoutput",
+        os.path.join(testtemproot, "1deriv_refined_corrected"),
+        "--nprocs",
+        "1",
+        "--regressderivs",
+        "1",
+        "--makepseudofile",
+        "--outputlevel",
+        "max",
+        "--nofilterwithrefineddelay",
+    ]
+    rapidtide_retroregress.retroregress(rapidtide_retroregress.process_args(inputargs=inputargs))
+
+    inputargs = [
+        os.path.join(exampleroot, "sub-RAPIDTIDETEST.nii.gz"),
+        os.path.join(testtemproot, "sub-RAPIDTIDETEST6"),
+        "--alternateoutput",
+        os.path.join(testtemproot, "concordance"),
+        "--nprocs",
+        "-1",
+        "--regressderivs",
+        "0",
+        "--delaypatchthresh",
+        "4.0",
+        "--outputlevel",
+        "max",
+    ]
+    rapidtide_retroregress.retroregress(rapidtide_retroregress.process_args(inputargs=inputargs))
+
+    absthresh = 1e-10
+    msethresh = 1e-12
+    spacetolerance = 1e-3
+    for map in [
+        "regressderivratios",
+        "medfiltregressderivratios",
+        "filteredregressderivratios",
+        "maxtimerefined",
+        "lfofilterInbandVarianceBefore",
+        "lfofilterInbandVarianceAfter",
+        "lfofilterInbandVarianceChange",
+        "lfofilterCoeff",
+        "lfofilterMean",
+        "lfofilterNorm",
+        "lfofilterR2",
+        "lfofilterR",
+    ]:
+        print(f"Testing map={map}")
+        filename1 = os.path.join(testtemproot, f"sub-RAPIDTIDETEST6_desc-{map}_map.nii.gz")
+        filename2 = os.path.join(testtemproot, f"concordance_desc-{map}_map.nii.gz")
+        assert tide_io.checkniftifilematch(
+            filename1,
+            filename2,
+            absthresh=absthresh,
+            msethresh=msethresh,
+            spacetolerance=spacetolerance,
+            debug=debug,
+        )
+
+
+if __name__ == "__main__":
+    mpl.use("TkAgg")
+    test_fullrunrapidtide_v6(debug=True, local=True, displayplots=True)