rapidtide 2.9.6__py3-none-any.whl → 3.1.3__py3-none-any.whl

rapidtide/scripts/{localflow → localflow.py}

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-#   Copyright 2016-2024 Blaise Frederick
+#   Copyright 2016-2025 Blaise Frederick
 #
 #   Licensed under the Apache License, Version 2.0 (the "License");
 #   you may not use this file except in compliance with the License.
@@ -19,5 +19,10 @@
 import rapidtide.workflows.localflow as theworkflow
 import rapidtide.workflows.parser_funcs as pf
 
-if __name__ == "__main__":
+
+def entrypoint():
     pf.generic_init(theworkflow._get_parser, theworkflow.localflow)
+
+
+if __name__ == "__main__":
+    entrypoint()

rapidtide/scripts/{mergequality → mergequality.py}

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-#   Copyright 2016-2024 Blaise Frederick
+#   Copyright 2016-2025 Blaise Frederick
 #
 #   Licensed under the Apache License, Version 2.0 (the "License");
 #   you may not use this file except in compliance with the License.
@@ -19,5 +19,10 @@
 import rapidtide.workflows.mergequality as theworkflow
 import rapidtide.workflows.parser_funcs as pf
 
-if __name__ == "__main__":
+
+def entrypoint():
     pf.generic_init(theworkflow._get_parser, theworkflow.mergequality)
+
+
+if __name__ == "__main__":
+    entrypoint()

rapidtide/scripts/{pairproc → pairproc.py}

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-#   Copyright 2016-2024 Blaise Frederick
+#   Copyright 2016-2025 Blaise Frederick
 #
 #   Licensed under the Apache License, Version 2.0 (the "License");
 #   you may not use this file except in compliance with the License.
@@ -19,5 +19,10 @@
 import rapidtide.workflows.pairproc as theworkflow
 import rapidtide.workflows.parser_funcs as pf
 
-if __name__ == "__main__":
+
+def entrypoint():
     pf.generic_init(theworkflow._get_parser, theworkflow.pairproc)
+
+
+if __name__ == "__main__":
+    entrypoint()

rapidtide/scripts/{pairwisemergenifti → pairwisemergenifti.py}

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-#   Copyright 2016-2024 Blaise Frederick
+#   Copyright 2016-2025 Blaise Frederick
 #
 #   Licensed under the Apache License, Version 2.0 (the "License");
 #   you may not use this file except in compliance with the License.
@@ -19,5 +19,10 @@
 import rapidtide.workflows.pairwisemergenifti as theworkflow
 import rapidtide.workflows.parser_funcs as pf
 
-if __name__ == "__main__":
+
+def entrypoint():
     pf.generic_init(theworkflow._get_parser, theworkflow.pairwisemergenifti)
+
+
+if __name__ == "__main__":
+    entrypoint()

rapidtide/scripts/{physiofreq → physiofreq.py}

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-#   Copyright 2016-2024 Blaise Frederick
+#   Copyright 2016-2025 Blaise Frederick
 #
 #   Licensed under the Apache License, Version 2.0 (the "License");
 #   you may not use this file except in compliance with the License.
@@ -19,5 +19,10 @@
 import rapidtide.workflows.parser_funcs as pf
 import rapidtide.workflows.physiofreq as theworkflow
 
-if __name__ == "__main__":
+
+def entrypoint():
     pf.generic_init(theworkflow._get_parser, theworkflow.physiofreq)
+
+
+if __name__ == "__main__":
+    entrypoint()

rapidtide/scripts/{pixelcomp → pixelcomp.py}

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-#   Copyright 2016-2024 Blaise Frederick
+#   Copyright 2016-2025 Blaise Frederick
 #
 #   Licensed under the Apache License, Version 2.0 (the "License");
 #   you may not use this file except in compliance with the License.
@@ -19,5 +19,10 @@
 import rapidtide.workflows.parser_funcs as pf
 import rapidtide.workflows.pixelcomp as theworkflow
 
-if __name__ == "__main__":
+
+def entrypoint():
     pf.generic_init(theworkflow._get_parser, theworkflow.pixelcomp)
+
+
+if __name__ == "__main__":
+    entrypoint()

rapidtide/scripts/{plethquality → plethquality.py}

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-#   Copyright 2016-2024 Blaise Frederick
+#   Copyright 2016-2025 Blaise Frederick
 #
 #   Licensed under the Apache License, Version 2.0 (the "License");
 #   you may not use this file except in compliance with the License.
@@ -19,5 +19,10 @@
 import rapidtide.workflows.parser_funcs as pf
 import rapidtide.workflows.plethquality as theworkflow
 
-if __name__ == "__main__":
+
+def entrypoint():
     pf.generic_init(theworkflow._get_parser, theworkflow.plethquality)
+
+
+if __name__ == "__main__":
+    entrypoint()

rapidtide/scripts/{polyfitim → polyfitim.py}

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-#   Copyright 2016-2024 Blaise Frederick
+#   Copyright 2016-2025 Blaise Frederick
 #
 #   Licensed under the Apache License, Version 2.0 (the "License");
 #   you may not use this file except in compliance with the License.
@@ -19,5 +19,10 @@
 import rapidtide.workflows.parser_funcs as pf
 import rapidtide.workflows.polyfitim as theworkflow
 
-if __name__ == "__main__":
+
+def entrypoint():
     pf.generic_init(theworkflow._get_parser, theworkflow.main)
+
+
+if __name__ == "__main__":
+    entrypoint()

rapidtide/scripts/{proj2flow → proj2flow.py}

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-#   Copyright 2016-2024 Blaise Frederick
+#   Copyright 2016-2025 Blaise Frederick
 #
 #   Licensed under the Apache License, Version 2.0 (the "License");
 #   you may not use this file except in compliance with the License.
@@ -19,5 +19,10 @@
 import rapidtide.workflows.parser_funcs as pf
 import rapidtide.workflows.proj2flow as theworkflow
 
-if __name__ == "__main__":
+
+def entrypoint():
     pf.generic_init(theworkflow._get_parser, theworkflow.proj2flow)
+
+
+if __name__ == "__main__":
+    entrypoint()

rapidtide/scripts/{rankimage → rankimage.py}

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-#   Copyright 2016-2024 Blaise Frederick
+#   Copyright 2016-2025 Blaise Frederick
 #
 #   Licensed under the Apache License, Version 2.0 (the "License");
 #   you may not use this file except in compliance with the License.
@@ -19,5 +19,10 @@
 import rapidtide.workflows.parser_funcs as pf
 import rapidtide.workflows.rankimage as theworkflow
 
-if __name__ == "__main__":
+
+def entrypoint():
     pf.generic_init(theworkflow._get_parser, theworkflow.rankimage)
+
+
+if __name__ == "__main__":
+    entrypoint()

rapidtide/scripts/{rapidtide → rapidtide.py}

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-#   Copyright 2016-2024 Blaise Frederick
+#   Copyright 2016-2025 Blaise Frederick
 #
 #   Licensed under the Apache License, Version 2.0 (the "License");
 #   you may not use this file except in compliance with the License.
@@ -19,5 +19,10 @@
 import rapidtide.workflows.rapidtide as rapidtide_workflow
 import rapidtide.workflows.rapidtide_parser as rapidtide_parser
 
-if __name__ == "__main__":
+
+def entrypoint():
     rapidtide_workflow.rapidtide_main(rapidtide_parser.process_args(inputargs=None))
+
+
+if __name__ == "__main__":
+    entrypoint()

rapidtide/scripts/{rapidtide2std → rapidtide2std.py}

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-#   Copyright 2016-2024 Blaise Frederick
+#   Copyright 2016-2025 Blaise Frederick
 #
 #   Licensed under the Apache License, Version 2.0 (the "License");
 #   you may not use this file except in compliance with the License.
@@ -19,5 +19,10 @@
 import rapidtide.workflows.parser_funcs as pf
 import rapidtide.workflows.rapidtide2std as theworkflow
 
-if __name__ == "__main__":
+
+def entrypoint():
     pf.generic_init(theworkflow._get_parser, theworkflow.rapidtide2std)
+
+
+if __name__ == "__main__":
+    entrypoint()

rapidtide/scripts/{resamplenifti → resamplenifti.py}

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-#   Copyright 2016-2024 Blaise Frederick
+#   Copyright 2016-2025 Blaise Frederick
 #
 #   Licensed under the Apache License, Version 2.0 (the "License");
 #   you may not use this file except in compliance with the License.
@@ -19,5 +19,10 @@
 import rapidtide.workflows.parser_funcs as pf
 import rapidtide.workflows.resamplenifti as theworkflow
 
-if __name__ == "__main__":
+
+def entrypoint():
     pf.generic_init(theworkflow._get_parser, theworkflow.resamplenifti)
+
+
+if __name__ == "__main__":
+    entrypoint()

rapidtide/scripts/{resampletc → resampletc.py}

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-#   Copyright 2016-2024 Blaise Frederick
+#   Copyright 2016-2025 Blaise Frederick
 #
 #   Licensed under the Apache License, Version 2.0 (the "License");
 #   you may not use this file except in compliance with the License.
@@ -19,5 +19,10 @@
 import rapidtide.workflows.parser_funcs as pf
 import rapidtide.workflows.resampletc as theworkflow
 
-if __name__ == "__main__":
+
+def entrypoint():
     pf.generic_init(theworkflow._get_parser, theworkflow.resampletc)
+
+
+if __name__ == "__main__":
+    entrypoint()

rapidtide/scripts/retrolagtcs.py

@@ -0,0 +1,28 @@
+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+#
+#   Copyright 2016-2025 Blaise Frederick
+#
+#   Licensed under the Apache License, Version 2.0 (the "License");
+#   you may not use this file except in compliance with the License.
+#   You may obtain a copy of the License at
+#
+#       http://www.apache.org/licenses/LICENSE-2.0
+#
+#   Unless required by applicable law or agreed to in writing, software
+#   distributed under the License is distributed on an "AS IS" BASIS,
+#   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+#   See the License for the specific language governing permissions and
+#   limitations under the License.
+#
+#
+import rapidtide.workflows.parser_funcs as pf
+import rapidtide.workflows.retrolagtcs as theworkflow
+
+
+def entrypoint():
+    pf.generic_init(theworkflow._get_parser, theworkflow.retrolagtcs)
+
+
+if __name__ == "__main__":
+    entrypoint()

rapidtide/scripts/retroregress.py

@@ -0,0 +1,28 @@
+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+#
+#   Copyright 2016-2025 Blaise Frederick
+#
+#   Licensed under the Apache License, Version 2.0 (the "License");
+#   you may not use this file except in compliance with the License.
+#   You may obtain a copy of the License at
+#
+#       http://www.apache.org/licenses/LICENSE-2.0
+#
+#   Unless required by applicable law or agreed to in writing, software
+#   distributed under the License is distributed on an "AS IS" BASIS,
+#   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+#   See the License for the specific language governing permissions and
+#   limitations under the License.
+#
+#
+import rapidtide.workflows.parser_funcs as pf
+import rapidtide.workflows.retroregress as theworkflow
+
+
+def entrypoint():
+    pf.generic_init(theworkflow._get_parser, theworkflow.retroregress)
+
+
+if __name__ == "__main__":
+    entrypoint()

rapidtide/scripts/{roisummarize → roisummarize.py}

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-#   Copyright 2016-2024 Blaise Frederick
+#   Copyright 2016-2025 Blaise Frederick
 #
 #   Licensed under the Apache License, Version 2.0 (the "License");
 #   you may not use this file except in compliance with the License.
@@ -19,5 +19,10 @@
 import rapidtide.workflows.parser_funcs as pf
 import rapidtide.workflows.roisummarize as theworkflow
 
-if __name__ == "__main__":
+
+def entrypoint():
     pf.generic_init(theworkflow._get_parser, theworkflow.roisummarize)
+
+
+if __name__ == "__main__":
+    entrypoint()

rapidtide/scripts/{runqualitycheck → runqualitycheck.py}

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-#   Copyright 2016-2024 Blaise Frederick
+#   Copyright 2016-2025 Blaise Frederick
 #
 #   Licensed under the Apache License, Version 2.0 (the "License");
 #   you may not use this file except in compliance with the License.
@@ -19,5 +19,10 @@
 import rapidtide.workflows.parser_funcs as pf
 import rapidtide.workflows.runqualitycheck as theworkflow
 
-if __name__ == "__main__":
+
+def entrypoint():
     pf.generic_init(theworkflow._get_parser, theworkflow.runqualitycheck)
+
+
+if __name__ == "__main__":
+    entrypoint()

rapidtide/scripts/{showarbcorr → showarbcorr.py}

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-#   Copyright 2016-2024 Blaise Frederick
+#   Copyright 2016-2025 Blaise Frederick
 #
 #   Licensed under the Apache License, Version 2.0 (the "License");
 #   you may not use this file except in compliance with the License.
@@ -19,5 +19,10 @@
 import rapidtide.workflows.parser_funcs as pf
 import rapidtide.workflows.showarbcorr as theworkflow
 
-if __name__ == "__main__":
+
+def entrypoint():
     pf.generic_init(theworkflow._get_parser, theworkflow.showarbcorr)
+
+
+if __name__ == "__main__":
+    entrypoint()

rapidtide/scripts/{showhist → showhist.py}

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-#   Copyright 2016-2024 Blaise Frederick
+#   Copyright 2016-2025 Blaise Frederick
 #
 #   Licensed under the Apache License, Version 2.0 (the "License");
 #   you may not use this file except in compliance with the License.
@@ -19,5 +19,10 @@
 import rapidtide.workflows.parser_funcs as pf
 import rapidtide.workflows.showhist as theworkflow
 
-if __name__ == "__main__":
+
+def entrypoint():
     pf.generic_init(theworkflow._get_parser, theworkflow.showhist)
+
+
+if __name__ == "__main__":
+    entrypoint()

rapidtide/scripts/{showstxcorr → showstxcorr.py}

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-#   Copyright 2016-2024 Blaise Frederick
+#   Copyright 2016-2025 Blaise Frederick
 #
 #   Licensed under the Apache License, Version 2.0 (the "License");
 #   you may not use this file except in compliance with the License.
@@ -19,5 +19,10 @@
 import rapidtide.workflows.parser_funcs as pf
 import rapidtide.workflows.showstxcorr as theworkflow
 
-if __name__ == "__main__":
+
+def entrypoint():
     pf.generic_init(theworkflow._get_parser, theworkflow.showstxcorr)
+
+
+if __name__ == "__main__":
+    entrypoint()

rapidtide/scripts/{showtc → showtc.py}

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-#   Copyright 2016-2024 Blaise Frederick
+#   Copyright 2016-2025 Blaise Frederick
 #
 #   Licensed under the Apache License, Version 2.0 (the "License");
 #   you may not use this file except in compliance with the License.
@@ -19,5 +19,10 @@
 import rapidtide.workflows.parser_funcs as pf
 import rapidtide.workflows.showtc as theworkflow
 
-if __name__ == "__main__":
+
+def entrypoint():
     pf.generic_init(theworkflow._get_parser, theworkflow.showtc)
+
+
+if __name__ == "__main__":
+    entrypoint()

rapidtide/scripts/{showxcorr_legacy → showxcorr_legacy.py}

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-#   Copyright 2016-2024 Blaise Frederick
+#   Copyright 2016-2025 Blaise Frederick
 #
 #   Licensed under the Apache License, Version 2.0 (the "License");
 #   you may not use this file except in compliance with the License.
@@ -79,7 +79,7 @@ def getNullDistributionData(
         corrlist[i] = theshuffledxcorr_trim[argmax(theshuffledxcorr_trim)]
 
         # find and tabulate correlation coefficient at 0 lag
-        corrlist_pear[i] = pearsonr(filteredindata, filteredshuffleddata)[0]
+        corrlist_pear[i] = pearsonr(filteredindata, filteredshuffleddata).statistic
 
         # progress
         # tide_util.progressbar(i + 1, numreps, label='Percent complete')
@@ -455,7 +455,7 @@ def main():
 
     # report the pearson correlation
     if showpearson and verbose:
-        print("Pearson_R:\t", thepxcorr[0])
+        print("Pearson_R:\t", thepxcorr.statistic)
         if estimate_significance:
             for idx, percentile in enumerate(thepercentiles):
                 print(
@@ -467,7 +467,7 @@ def main():
         print("")
 
     if debug:
-        print(thepxcorr)
+        print(thepxcorr.statistic, thepxcorr.pvalue)
 
     if verbose:
         if uselabel:
@@ -497,7 +497,7 @@ def main():
                         "xcorr_R(P=0.05)",
                         "xcorr_maxdelay",
                     )
-                print(thelabel, thepxcorr[0], pearpcts_fit[0], R, pcts_fit[0], -maxdelay)
+                print(thelabel, thepxcorr.statistic, pearpcts_fit[0], R, pcts_fit[0], -maxdelay)
             else:
                 if labelline:
                     print(
@@ -507,7 +507,7 @@ def main():
                         "xcorr_R(P=0.05)",
                         "xcorr_maxdelay",
                     )
-                print(thepxcorr[0], pearpcts_fit[0], R, pcts_fit[0], -maxdelay)
+                print(thepxcorr.statistic, pearpcts_fit[0], R, pcts_fit[0], -maxdelay)
         else:
             if uselabel:
                 if labelline:
@@ -518,11 +518,11 @@ def main():
                         "xcorr_R",
                         "xcorr_maxdelay",
                     )
-                print(thelabel, thepxcorr[0], thepxcorr[1], R, -maxdelay)
+                print(thelabel, thepxcorr.statistic, thepxcorr.pvalue, R, -maxdelay)
             else:
                 if labelline:
                     print("pearson_r\tpearson_p\txcorr_R\txcorr_t\txcorr_maxdelay")
-                print(thepxcorr[0], "\t", thepxcorr[1], "\t", R, "\t", -maxdelay)
+                print(thepxcorr.statistic, "\t", thepxcorr.pvalue, "\t", R, "\t", -maxdelay)
 
     if displayplots:
         fig = figure()

rapidtide/scripts/{showxcorrx → showxcorrx.py}

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-#   Copyright 2016-2024 Blaise Frederick
+#   Copyright 2016-2025 Blaise Frederick
 #
 #   Licensed under the Apache License, Version 2.0 (the "License");
 #   you may not use this file except in compliance with the License.
@@ -19,5 +19,10 @@
 import rapidtide.workflows.parser_funcs as pf
 import rapidtide.workflows.showxcorrx as theworkflow
 
-if __name__ == "__main__":
+
+def entrypoint():
     pf.generic_init(theworkflow._get_parser, theworkflow.showxcorrx)
+
+
+if __name__ == "__main__":
+    entrypoint()

rapidtide/scripts/{showxy → showxy.py}

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-#   Copyright 2016-2024 Blaise Frederick
+#   Copyright 2016-2025 Blaise Frederick
 #
 #   Licensed under the Apache License, Version 2.0 (the "License");
 #   you may not use this file except in compliance with the License.
@@ -19,5 +19,10 @@
 import rapidtide.workflows.parser_funcs as pf
 import rapidtide.workflows.showxy as theworkflow
 
-if __name__ == "__main__":
+
+def entrypoint():
     pf.generic_init(theworkflow._get_parser, theworkflow.showxy)
+
+
+if __name__ == "__main__":
+    entrypoint()

rapidtide/scripts/{simdata → simdata.py}

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-#   Copyright 2016-2024 Blaise Frederick
+#   Copyright 2016-2025 Blaise Frederick
 #
 #   Licensed under the Apache License, Version 2.0 (the "License");
 #   you may not use this file except in compliance with the License.
@@ -19,5 +19,10 @@
 import rapidtide.workflows.parser_funcs as pf
 import rapidtide.workflows.simdata as theworkflow
 
-if __name__ == "__main__":
+
+def entrypoint():
     pf.generic_init(theworkflow._get_parser, theworkflow.simdata)
+
+
+if __name__ == "__main__":
+    entrypoint()

rapidtide/scripts/{spatialdecomp → spatialdecomp.py}

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-#   Copyright 2016-2024 Blaise Frederick
+#   Copyright 2016-2025 Blaise Frederick
 #
 #   Licensed under the Apache License, Version 2.0 (the "License");
 #   you may not use this file except in compliance with the License.
@@ -19,5 +19,10 @@
 import rapidtide.workflows.niftidecomp as theworkflow
 import rapidtide.workflows.parser_funcs as pf
 
-if __name__ == "__main__":
+
+def entrypoint():
     pf.generic_init(theworkflow._get_parser_spatial, theworkflow.main_spatial)
+
+
+if __name__ == "__main__":
+    entrypoint()

rapidtide/scripts/{spatialfit → spatialfit.py}

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-#   Copyright 2016-2024 Blaise Frederick
+#   Copyright 2016-2025 Blaise Frederick
 #
 #   Licensed under the Apache License, Version 2.0 (the "License");
 #   you may not use this file except in compliance with the License.
@@ -19,5 +19,10 @@
 import rapidtide.workflows.parser_funcs as pf
 import rapidtide.workflows.spatialfit as theworkflow
 
-if __name__ == "__main__":
+
+def entrypoint():
     pf.generic_init(theworkflow._get_parser, theworkflow.spatialfit)
+
+
+if __name__ == "__main__":
+    entrypoint()