rapidtide 2.9.5__py3-none-any.whl → 3.1.3__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (405) hide show
  1. cloud/gmscalc-HCPYA +1 -1
  2. cloud/mount-and-run +2 -0
  3. cloud/rapidtide-HCPYA +3 -3
  4. rapidtide/Colortables.py +538 -38
  5. rapidtide/OrthoImageItem.py +1094 -51
  6. rapidtide/RapidtideDataset.py +1709 -114
  7. rapidtide/__init__.py +0 -8
  8. rapidtide/_version.py +4 -4
  9. rapidtide/calccoherence.py +242 -97
  10. rapidtide/calcnullsimfunc.py +240 -140
  11. rapidtide/calcsimfunc.py +314 -129
  12. rapidtide/correlate.py +1211 -389
  13. rapidtide/data/examples/src/testLD +56 -0
  14. rapidtide/data/examples/src/test_findmaxlag.py +2 -2
  15. rapidtide/data/examples/src/test_mlregressallt.py +32 -17
  16. rapidtide/data/examples/src/testalign +1 -1
  17. rapidtide/data/examples/src/testatlasaverage +35 -7
  18. rapidtide/data/examples/src/testboth +21 -0
  19. rapidtide/data/examples/src/testcifti +11 -0
  20. rapidtide/data/examples/src/testdelayvar +13 -0
  21. rapidtide/data/examples/src/testdlfilt +25 -0
  22. rapidtide/data/examples/src/testfft +35 -0
  23. rapidtide/data/examples/src/testfileorfloat +37 -0
  24. rapidtide/data/examples/src/testfmri +94 -27
  25. rapidtide/data/examples/src/testfuncs +3 -3
  26. rapidtide/data/examples/src/testglmfilt +8 -6
  27. rapidtide/data/examples/src/testhappy +84 -51
  28. rapidtide/data/examples/src/testinitdelay +19 -0
  29. rapidtide/data/examples/src/testmodels +33 -0
  30. rapidtide/data/examples/src/testnewrefine +26 -0
  31. rapidtide/data/examples/src/testnoiseamp +21 -0
  32. rapidtide/data/examples/src/testppgproc +17 -0
  33. rapidtide/data/examples/src/testrefineonly +22 -0
  34. rapidtide/data/examples/src/testretro +26 -13
  35. rapidtide/data/examples/src/testretrolagtcs +16 -0
  36. rapidtide/data/examples/src/testrolloff +11 -0
  37. rapidtide/data/examples/src/testsimdata +45 -28
  38. rapidtide/data/models/model_cnn_pytorch/loss.png +0 -0
  39. rapidtide/data/models/model_cnn_pytorch/loss.txt +1 -0
  40. rapidtide/data/models/model_cnn_pytorch/model.pth +0 -0
  41. rapidtide/data/models/model_cnn_pytorch/model_meta.json +68 -0
  42. rapidtide/data/models/model_cnn_pytorch_fulldata/loss.png +0 -0
  43. rapidtide/data/models/model_cnn_pytorch_fulldata/loss.txt +1 -0
  44. rapidtide/data/models/model_cnn_pytorch_fulldata/model.pth +0 -0
  45. rapidtide/data/models/model_cnn_pytorch_fulldata/model_meta.json +80 -0
  46. rapidtide/data/models/model_cnnbp_pytorch_fullldata/loss.png +0 -0
  47. rapidtide/data/models/model_cnnbp_pytorch_fullldata/loss.txt +1 -0
  48. rapidtide/data/models/model_cnnbp_pytorch_fullldata/model.pth +0 -0
  49. rapidtide/data/models/model_cnnbp_pytorch_fullldata/model_meta.json +138 -0
  50. rapidtide/data/models/model_cnnfft_pytorch_fulldata/loss.png +0 -0
  51. rapidtide/data/models/model_cnnfft_pytorch_fulldata/loss.txt +1 -0
  52. rapidtide/data/models/model_cnnfft_pytorch_fulldata/model.pth +0 -0
  53. rapidtide/data/models/model_cnnfft_pytorch_fulldata/model_meta.json +128 -0
  54. rapidtide/data/models/model_ppgattention_pytorch_w128_fulldata/loss.png +0 -0
  55. rapidtide/data/models/model_ppgattention_pytorch_w128_fulldata/loss.txt +1 -0
  56. rapidtide/data/models/model_ppgattention_pytorch_w128_fulldata/model.pth +0 -0
  57. rapidtide/data/models/model_ppgattention_pytorch_w128_fulldata/model_meta.json +49 -0
  58. rapidtide/data/models/model_revised_tf2/model.keras +0 -0
  59. rapidtide/data/models/{model_serdar → model_revised_tf2}/model_meta.json +1 -1
  60. rapidtide/data/models/model_serdar2_tf2/model.keras +0 -0
  61. rapidtide/data/models/{model_serdar2 → model_serdar2_tf2}/model_meta.json +1 -1
  62. rapidtide/data/models/model_serdar_tf2/model.keras +0 -0
  63. rapidtide/data/models/{model_revised → model_serdar_tf2}/model_meta.json +1 -1
  64. rapidtide/data/reference/HCP1200v2_MTT_2mm.nii.gz +0 -0
  65. rapidtide/data/reference/HCP1200v2_binmask_2mm.nii.gz +0 -0
  66. rapidtide/data/reference/HCP1200v2_csf_2mm.nii.gz +0 -0
  67. rapidtide/data/reference/HCP1200v2_gray_2mm.nii.gz +0 -0
  68. rapidtide/data/reference/HCP1200v2_graylaghist.json +7 -0
  69. rapidtide/data/reference/HCP1200v2_graylaghist.tsv.gz +0 -0
  70. rapidtide/data/reference/HCP1200v2_laghist.json +7 -0
  71. rapidtide/data/reference/HCP1200v2_laghist.tsv.gz +0 -0
  72. rapidtide/data/reference/HCP1200v2_mask_2mm.nii.gz +0 -0
  73. rapidtide/data/reference/HCP1200v2_maxcorr_2mm.nii.gz +0 -0
  74. rapidtide/data/reference/HCP1200v2_maxtime_2mm.nii.gz +0 -0
  75. rapidtide/data/reference/HCP1200v2_maxwidth_2mm.nii.gz +0 -0
  76. rapidtide/data/reference/HCP1200v2_negmask_2mm.nii.gz +0 -0
  77. rapidtide/data/reference/HCP1200v2_timepercentile_2mm.nii.gz +0 -0
  78. rapidtide/data/reference/HCP1200v2_white_2mm.nii.gz +0 -0
  79. rapidtide/data/reference/HCP1200v2_whitelaghist.json +7 -0
  80. rapidtide/data/reference/HCP1200v2_whitelaghist.tsv.gz +0 -0
  81. rapidtide/data/reference/JHU-ArterialTerritoriesNoVent-LVL1-seg2.xml +131 -0
  82. rapidtide/data/reference/JHU-ArterialTerritoriesNoVent-LVL1-seg2_regions.txt +60 -0
  83. rapidtide/data/reference/JHU-ArterialTerritoriesNoVent-LVL1-seg2_space-MNI152NLin6Asym_2mm.nii.gz +0 -0
  84. rapidtide/data/reference/JHU-ArterialTerritoriesNoVent-LVL1_space-MNI152NLin2009cAsym_2mm.nii.gz +0 -0
  85. rapidtide/data/reference/JHU-ArterialTerritoriesNoVent-LVL1_space-MNI152NLin2009cAsym_2mm_mask.nii.gz +0 -0
  86. rapidtide/data/reference/JHU-ArterialTerritoriesNoVent-LVL1_space-MNI152NLin6Asym_2mm_mask.nii.gz +0 -0
  87. rapidtide/data/reference/JHU-ArterialTerritoriesNoVent-LVL2_space-MNI152NLin6Asym_2mm_mask.nii.gz +0 -0
  88. rapidtide/data/reference/MNI152_T1_1mm_Brain_FAST_seg.nii.gz +0 -0
  89. rapidtide/data/reference/MNI152_T1_1mm_Brain_Mask.nii.gz +0 -0
  90. rapidtide/data/reference/MNI152_T1_2mm_Brain_FAST_seg.nii.gz +0 -0
  91. rapidtide/data/reference/MNI152_T1_2mm_Brain_Mask.nii.gz +0 -0
  92. rapidtide/decorators.py +91 -0
  93. rapidtide/dlfilter.py +2553 -414
  94. rapidtide/dlfiltertorch.py +5201 -0
  95. rapidtide/externaltools.py +328 -13
  96. rapidtide/fMRIData_class.py +178 -0
  97. rapidtide/ffttools.py +168 -0
  98. rapidtide/filter.py +2704 -1462
  99. rapidtide/fit.py +2361 -579
  100. rapidtide/genericmultiproc.py +197 -0
  101. rapidtide/happy_supportfuncs.py +3255 -548
  102. rapidtide/helper_classes.py +590 -1181
  103. rapidtide/io.py +2569 -468
  104. rapidtide/linfitfiltpass.py +784 -0
  105. rapidtide/makelaggedtcs.py +267 -97
  106. rapidtide/maskutil.py +555 -25
  107. rapidtide/miscmath.py +867 -137
  108. rapidtide/multiproc.py +217 -44
  109. rapidtide/patchmatch.py +752 -0
  110. rapidtide/peakeval.py +32 -32
  111. rapidtide/ppgproc.py +2205 -0
  112. rapidtide/qualitycheck.py +353 -40
  113. rapidtide/refinedelay.py +854 -0
  114. rapidtide/refineregressor.py +939 -0
  115. rapidtide/resample.py +725 -204
  116. rapidtide/scripts/__init__.py +1 -0
  117. rapidtide/scripts/{adjustoffset → adjustoffset.py} +7 -2
  118. rapidtide/scripts/{aligntcs → aligntcs.py} +7 -2
  119. rapidtide/scripts/{applydlfilter → applydlfilter.py} +7 -2
  120. rapidtide/scripts/applyppgproc.py +28 -0
  121. rapidtide/scripts/{atlasaverage → atlasaverage.py} +7 -2
  122. rapidtide/scripts/{atlastool → atlastool.py} +7 -2
  123. rapidtide/scripts/{calcicc → calcicc.py} +7 -2
  124. rapidtide/scripts/{calctexticc → calctexticc.py} +7 -2
  125. rapidtide/scripts/{calcttest → calcttest.py} +7 -2
  126. rapidtide/scripts/{ccorrica → ccorrica.py} +7 -2
  127. rapidtide/scripts/delayvar.py +28 -0
  128. rapidtide/scripts/{diffrois → diffrois.py} +7 -2
  129. rapidtide/scripts/{endtidalproc → endtidalproc.py} +7 -2
  130. rapidtide/scripts/{fdica → fdica.py} +7 -2
  131. rapidtide/scripts/{filtnifti → filtnifti.py} +7 -2
  132. rapidtide/scripts/{filttc → filttc.py} +7 -2
  133. rapidtide/scripts/{fingerprint → fingerprint.py} +20 -16
  134. rapidtide/scripts/{fixtr → fixtr.py} +7 -2
  135. rapidtide/scripts/{gmscalc → gmscalc.py} +7 -2
  136. rapidtide/scripts/{happy → happy.py} +7 -2
  137. rapidtide/scripts/{happy2std → happy2std.py} +7 -2
  138. rapidtide/scripts/{happywarp → happywarp.py} +8 -4
  139. rapidtide/scripts/{histnifti → histnifti.py} +7 -2
  140. rapidtide/scripts/{histtc → histtc.py} +7 -2
  141. rapidtide/scripts/{glmfilt → linfitfilt.py} +7 -4
  142. rapidtide/scripts/{localflow → localflow.py} +7 -2
  143. rapidtide/scripts/{mergequality → mergequality.py} +7 -2
  144. rapidtide/scripts/{pairproc → pairproc.py} +7 -2
  145. rapidtide/scripts/{pairwisemergenifti → pairwisemergenifti.py} +7 -2
  146. rapidtide/scripts/{physiofreq → physiofreq.py} +7 -2
  147. rapidtide/scripts/{pixelcomp → pixelcomp.py} +7 -2
  148. rapidtide/scripts/{plethquality → plethquality.py} +7 -2
  149. rapidtide/scripts/{polyfitim → polyfitim.py} +7 -2
  150. rapidtide/scripts/{proj2flow → proj2flow.py} +7 -2
  151. rapidtide/scripts/{rankimage → rankimage.py} +7 -2
  152. rapidtide/scripts/{rapidtide → rapidtide.py} +7 -2
  153. rapidtide/scripts/{rapidtide2std → rapidtide2std.py} +7 -2
  154. rapidtide/scripts/{resamplenifti → resamplenifti.py} +7 -2
  155. rapidtide/scripts/{resampletc → resampletc.py} +7 -2
  156. rapidtide/scripts/retrolagtcs.py +28 -0
  157. rapidtide/scripts/retroregress.py +28 -0
  158. rapidtide/scripts/{roisummarize → roisummarize.py} +7 -2
  159. rapidtide/scripts/{runqualitycheck → runqualitycheck.py} +7 -2
  160. rapidtide/scripts/{showarbcorr → showarbcorr.py} +7 -2
  161. rapidtide/scripts/{showhist → showhist.py} +7 -2
  162. rapidtide/scripts/{showstxcorr → showstxcorr.py} +7 -2
  163. rapidtide/scripts/{showtc → showtc.py} +7 -2
  164. rapidtide/scripts/{showxcorr_legacy → showxcorr_legacy.py} +8 -8
  165. rapidtide/scripts/{showxcorrx → showxcorrx.py} +7 -2
  166. rapidtide/scripts/{showxy → showxy.py} +7 -2
  167. rapidtide/scripts/{simdata → simdata.py} +7 -2
  168. rapidtide/scripts/{spatialdecomp → spatialdecomp.py} +7 -2
  169. rapidtide/scripts/{spatialfit → spatialfit.py} +7 -2
  170. rapidtide/scripts/{spatialmi → spatialmi.py} +7 -2
  171. rapidtide/scripts/{spectrogram → spectrogram.py} +7 -2
  172. rapidtide/scripts/stupidramtricks.py +238 -0
  173. rapidtide/scripts/{synthASL → synthASL.py} +7 -2
  174. rapidtide/scripts/{tcfrom2col → tcfrom2col.py} +7 -2
  175. rapidtide/scripts/{tcfrom3col → tcfrom3col.py} +7 -2
  176. rapidtide/scripts/{temporaldecomp → temporaldecomp.py} +7 -2
  177. rapidtide/scripts/{testhrv → testhrv.py} +1 -1
  178. rapidtide/scripts/{threeD → threeD.py} +7 -2
  179. rapidtide/scripts/{tidepool → tidepool.py} +7 -2
  180. rapidtide/scripts/{variabilityizer → variabilityizer.py} +7 -2
  181. rapidtide/simFuncClasses.py +2113 -0
  182. rapidtide/simfuncfit.py +312 -108
  183. rapidtide/stats.py +579 -247
  184. rapidtide/tests/.coveragerc +27 -6
  185. rapidtide-2.9.5.data/scripts/fdica → rapidtide/tests/cleanposttest +4 -6
  186. rapidtide/tests/happycomp +9 -0
  187. rapidtide/tests/resethappytargets +1 -1
  188. rapidtide/tests/resetrapidtidetargets +1 -1
  189. rapidtide/tests/resettargets +1 -1
  190. rapidtide/tests/runlocaltest +3 -3
  191. rapidtide/tests/showkernels +1 -1
  192. rapidtide/tests/test_aliasedcorrelate.py +4 -4
  193. rapidtide/tests/test_aligntcs.py +1 -1
  194. rapidtide/tests/test_calcicc.py +1 -1
  195. rapidtide/tests/test_cleanregressor.py +184 -0
  196. rapidtide/tests/test_congrid.py +70 -81
  197. rapidtide/tests/test_correlate.py +1 -1
  198. rapidtide/tests/test_corrpass.py +4 -4
  199. rapidtide/tests/test_delayestimation.py +54 -59
  200. rapidtide/tests/test_dlfiltertorch.py +437 -0
  201. rapidtide/tests/test_doresample.py +2 -2
  202. rapidtide/tests/test_externaltools.py +69 -0
  203. rapidtide/tests/test_fastresampler.py +9 -5
  204. rapidtide/tests/test_filter.py +96 -57
  205. rapidtide/tests/test_findmaxlag.py +50 -19
  206. rapidtide/tests/test_fullrunhappy_v1.py +15 -10
  207. rapidtide/tests/test_fullrunhappy_v2.py +19 -13
  208. rapidtide/tests/test_fullrunhappy_v3.py +28 -13
  209. rapidtide/tests/test_fullrunhappy_v4.py +30 -11
  210. rapidtide/tests/test_fullrunhappy_v5.py +62 -0
  211. rapidtide/tests/test_fullrunrapidtide_v1.py +61 -7
  212. rapidtide/tests/test_fullrunrapidtide_v2.py +27 -15
  213. rapidtide/tests/test_fullrunrapidtide_v3.py +28 -8
  214. rapidtide/tests/test_fullrunrapidtide_v4.py +16 -8
  215. rapidtide/tests/test_fullrunrapidtide_v5.py +15 -6
  216. rapidtide/tests/test_fullrunrapidtide_v6.py +142 -0
  217. rapidtide/tests/test_fullrunrapidtide_v7.py +114 -0
  218. rapidtide/tests/test_fullrunrapidtide_v8.py +66 -0
  219. rapidtide/tests/test_getparsers.py +158 -0
  220. rapidtide/tests/test_io.py +59 -18
  221. rapidtide/tests/{test_glmpass.py → test_linfitfiltpass.py} +10 -10
  222. rapidtide/tests/test_mi.py +1 -1
  223. rapidtide/tests/test_miscmath.py +1 -1
  224. rapidtide/tests/test_motionregress.py +5 -5
  225. rapidtide/tests/test_nullcorr.py +6 -9
  226. rapidtide/tests/test_padvec.py +216 -0
  227. rapidtide/tests/test_parserfuncs.py +101 -0
  228. rapidtide/tests/test_phaseanalysis.py +1 -1
  229. rapidtide/tests/test_rapidtideparser.py +59 -53
  230. rapidtide/tests/test_refinedelay.py +296 -0
  231. rapidtide/tests/test_runmisc.py +5 -5
  232. rapidtide/tests/test_sharedmem.py +60 -0
  233. rapidtide/tests/test_simroundtrip.py +132 -0
  234. rapidtide/tests/test_simulate.py +1 -1
  235. rapidtide/tests/test_stcorrelate.py +4 -2
  236. rapidtide/tests/test_timeshift.py +2 -2
  237. rapidtide/tests/test_valtoindex.py +1 -1
  238. rapidtide/tests/test_zRapidtideDataset.py +5 -3
  239. rapidtide/tests/utils.py +10 -9
  240. rapidtide/tidepoolTemplate.py +88 -70
  241. rapidtide/tidepoolTemplate.ui +60 -46
  242. rapidtide/tidepoolTemplate_alt.py +88 -53
  243. rapidtide/tidepoolTemplate_alt.ui +62 -52
  244. rapidtide/tidepoolTemplate_alt_qt6.py +921 -0
  245. rapidtide/tidepoolTemplate_big.py +1125 -0
  246. rapidtide/tidepoolTemplate_big.ui +2386 -0
  247. rapidtide/tidepoolTemplate_big_qt6.py +1129 -0
  248. rapidtide/tidepoolTemplate_qt6.py +793 -0
  249. rapidtide/util.py +1389 -148
  250. rapidtide/voxelData.py +1048 -0
  251. rapidtide/wiener.py +138 -25
  252. rapidtide/wiener2.py +114 -8
  253. rapidtide/workflows/adjustoffset.py +107 -5
  254. rapidtide/workflows/aligntcs.py +86 -3
  255. rapidtide/workflows/applydlfilter.py +231 -89
  256. rapidtide/workflows/applyppgproc.py +540 -0
  257. rapidtide/workflows/atlasaverage.py +309 -48
  258. rapidtide/workflows/atlastool.py +130 -9
  259. rapidtide/workflows/calcSimFuncMap.py +490 -0
  260. rapidtide/workflows/calctexticc.py +202 -10
  261. rapidtide/workflows/ccorrica.py +123 -15
  262. rapidtide/workflows/cleanregressor.py +415 -0
  263. rapidtide/workflows/delayvar.py +1268 -0
  264. rapidtide/workflows/diffrois.py +84 -6
  265. rapidtide/workflows/endtidalproc.py +149 -9
  266. rapidtide/workflows/fdica.py +197 -17
  267. rapidtide/workflows/filtnifti.py +71 -4
  268. rapidtide/workflows/filttc.py +76 -5
  269. rapidtide/workflows/fitSimFuncMap.py +578 -0
  270. rapidtide/workflows/fixtr.py +74 -4
  271. rapidtide/workflows/gmscalc.py +116 -6
  272. rapidtide/workflows/happy.py +1242 -480
  273. rapidtide/workflows/happy2std.py +145 -13
  274. rapidtide/workflows/happy_parser.py +277 -59
  275. rapidtide/workflows/histnifti.py +120 -4
  276. rapidtide/workflows/histtc.py +85 -4
  277. rapidtide/workflows/{glmfilt.py → linfitfilt.py} +128 -14
  278. rapidtide/workflows/localflow.py +329 -29
  279. rapidtide/workflows/mergequality.py +80 -4
  280. rapidtide/workflows/niftidecomp.py +323 -19
  281. rapidtide/workflows/niftistats.py +178 -8
  282. rapidtide/workflows/pairproc.py +99 -5
  283. rapidtide/workflows/pairwisemergenifti.py +86 -3
  284. rapidtide/workflows/parser_funcs.py +1488 -56
  285. rapidtide/workflows/physiofreq.py +139 -12
  286. rapidtide/workflows/pixelcomp.py +211 -9
  287. rapidtide/workflows/plethquality.py +105 -23
  288. rapidtide/workflows/polyfitim.py +159 -19
  289. rapidtide/workflows/proj2flow.py +76 -3
  290. rapidtide/workflows/rankimage.py +115 -8
  291. rapidtide/workflows/rapidtide.py +1833 -1919
  292. rapidtide/workflows/rapidtide2std.py +101 -3
  293. rapidtide/workflows/rapidtide_parser.py +607 -372
  294. rapidtide/workflows/refineDelayMap.py +249 -0
  295. rapidtide/workflows/refineRegressor.py +1215 -0
  296. rapidtide/workflows/regressfrommaps.py +308 -0
  297. rapidtide/workflows/resamplenifti.py +86 -4
  298. rapidtide/workflows/resampletc.py +92 -4
  299. rapidtide/workflows/retrolagtcs.py +442 -0
  300. rapidtide/workflows/retroregress.py +1501 -0
  301. rapidtide/workflows/roisummarize.py +176 -7
  302. rapidtide/workflows/runqualitycheck.py +72 -7
  303. rapidtide/workflows/showarbcorr.py +172 -16
  304. rapidtide/workflows/showhist.py +87 -3
  305. rapidtide/workflows/showstxcorr.py +161 -4
  306. rapidtide/workflows/showtc.py +172 -10
  307. rapidtide/workflows/showxcorrx.py +250 -62
  308. rapidtide/workflows/showxy.py +186 -16
  309. rapidtide/workflows/simdata.py +418 -112
  310. rapidtide/workflows/spatialfit.py +83 -8
  311. rapidtide/workflows/spatialmi.py +252 -29
  312. rapidtide/workflows/spectrogram.py +306 -33
  313. rapidtide/workflows/synthASL.py +157 -6
  314. rapidtide/workflows/tcfrom2col.py +77 -3
  315. rapidtide/workflows/tcfrom3col.py +75 -3
  316. rapidtide/workflows/tidepool.py +3829 -666
  317. rapidtide/workflows/utils.py +45 -19
  318. rapidtide/workflows/utils_doc.py +293 -0
  319. rapidtide/workflows/variabilityizer.py +118 -5
  320. {rapidtide-2.9.5.dist-info → rapidtide-3.1.3.dist-info}/METADATA +30 -223
  321. rapidtide-3.1.3.dist-info/RECORD +393 -0
  322. {rapidtide-2.9.5.dist-info → rapidtide-3.1.3.dist-info}/WHEEL +1 -1
  323. rapidtide-3.1.3.dist-info/entry_points.txt +65 -0
  324. rapidtide-3.1.3.dist-info/top_level.txt +2 -0
  325. rapidtide/calcandfitcorrpairs.py +0 -262
  326. rapidtide/data/examples/src/testoutputsize +0 -45
  327. rapidtide/data/models/model_revised/model.h5 +0 -0
  328. rapidtide/data/models/model_serdar/model.h5 +0 -0
  329. rapidtide/data/models/model_serdar2/model.h5 +0 -0
  330. rapidtide/data/reference/ASPECTS_nlin_asym_09c_2mm.nii.gz +0 -0
  331. rapidtide/data/reference/ASPECTS_nlin_asym_09c_2mm_mask.nii.gz +0 -0
  332. rapidtide/data/reference/ATTbasedFlowTerritories_split_nlin_asym_09c_2mm.nii.gz +0 -0
  333. rapidtide/data/reference/ATTbasedFlowTerritories_split_nlin_asym_09c_2mm_mask.nii.gz +0 -0
  334. rapidtide/data/reference/HCP1200_binmask_2mm_2009c_asym.nii.gz +0 -0
  335. rapidtide/data/reference/HCP1200_lag_2mm_2009c_asym.nii.gz +0 -0
  336. rapidtide/data/reference/HCP1200_mask_2mm_2009c_asym.nii.gz +0 -0
  337. rapidtide/data/reference/HCP1200_negmask_2mm_2009c_asym.nii.gz +0 -0
  338. rapidtide/data/reference/HCP1200_sigma_2mm_2009c_asym.nii.gz +0 -0
  339. rapidtide/data/reference/HCP1200_strength_2mm_2009c_asym.nii.gz +0 -0
  340. rapidtide/glmpass.py +0 -434
  341. rapidtide/refine_factored.py +0 -641
  342. rapidtide/scripts/retroglm +0 -23
  343. rapidtide/workflows/glmfrommaps.py +0 -202
  344. rapidtide/workflows/retroglm.py +0 -643
  345. rapidtide-2.9.5.data/scripts/adjustoffset +0 -23
  346. rapidtide-2.9.5.data/scripts/aligntcs +0 -23
  347. rapidtide-2.9.5.data/scripts/applydlfilter +0 -23
  348. rapidtide-2.9.5.data/scripts/atlasaverage +0 -23
  349. rapidtide-2.9.5.data/scripts/atlastool +0 -23
  350. rapidtide-2.9.5.data/scripts/calcicc +0 -22
  351. rapidtide-2.9.5.data/scripts/calctexticc +0 -23
  352. rapidtide-2.9.5.data/scripts/calcttest +0 -22
  353. rapidtide-2.9.5.data/scripts/ccorrica +0 -23
  354. rapidtide-2.9.5.data/scripts/diffrois +0 -23
  355. rapidtide-2.9.5.data/scripts/endtidalproc +0 -23
  356. rapidtide-2.9.5.data/scripts/filtnifti +0 -23
  357. rapidtide-2.9.5.data/scripts/filttc +0 -23
  358. rapidtide-2.9.5.data/scripts/fingerprint +0 -593
  359. rapidtide-2.9.5.data/scripts/fixtr +0 -23
  360. rapidtide-2.9.5.data/scripts/glmfilt +0 -24
  361. rapidtide-2.9.5.data/scripts/gmscalc +0 -22
  362. rapidtide-2.9.5.data/scripts/happy +0 -25
  363. rapidtide-2.9.5.data/scripts/happy2std +0 -23
  364. rapidtide-2.9.5.data/scripts/happywarp +0 -350
  365. rapidtide-2.9.5.data/scripts/histnifti +0 -23
  366. rapidtide-2.9.5.data/scripts/histtc +0 -23
  367. rapidtide-2.9.5.data/scripts/localflow +0 -23
  368. rapidtide-2.9.5.data/scripts/mergequality +0 -23
  369. rapidtide-2.9.5.data/scripts/pairproc +0 -23
  370. rapidtide-2.9.5.data/scripts/pairwisemergenifti +0 -23
  371. rapidtide-2.9.5.data/scripts/physiofreq +0 -23
  372. rapidtide-2.9.5.data/scripts/pixelcomp +0 -23
  373. rapidtide-2.9.5.data/scripts/plethquality +0 -23
  374. rapidtide-2.9.5.data/scripts/polyfitim +0 -23
  375. rapidtide-2.9.5.data/scripts/proj2flow +0 -23
  376. rapidtide-2.9.5.data/scripts/rankimage +0 -23
  377. rapidtide-2.9.5.data/scripts/rapidtide +0 -23
  378. rapidtide-2.9.5.data/scripts/rapidtide2std +0 -23
  379. rapidtide-2.9.5.data/scripts/resamplenifti +0 -23
  380. rapidtide-2.9.5.data/scripts/resampletc +0 -23
  381. rapidtide-2.9.5.data/scripts/retroglm +0 -23
  382. rapidtide-2.9.5.data/scripts/roisummarize +0 -23
  383. rapidtide-2.9.5.data/scripts/runqualitycheck +0 -23
  384. rapidtide-2.9.5.data/scripts/showarbcorr +0 -23
  385. rapidtide-2.9.5.data/scripts/showhist +0 -23
  386. rapidtide-2.9.5.data/scripts/showstxcorr +0 -23
  387. rapidtide-2.9.5.data/scripts/showtc +0 -23
  388. rapidtide-2.9.5.data/scripts/showxcorr_legacy +0 -536
  389. rapidtide-2.9.5.data/scripts/showxcorrx +0 -23
  390. rapidtide-2.9.5.data/scripts/showxy +0 -23
  391. rapidtide-2.9.5.data/scripts/simdata +0 -23
  392. rapidtide-2.9.5.data/scripts/spatialdecomp +0 -23
  393. rapidtide-2.9.5.data/scripts/spatialfit +0 -23
  394. rapidtide-2.9.5.data/scripts/spatialmi +0 -23
  395. rapidtide-2.9.5.data/scripts/spectrogram +0 -23
  396. rapidtide-2.9.5.data/scripts/synthASL +0 -23
  397. rapidtide-2.9.5.data/scripts/tcfrom2col +0 -23
  398. rapidtide-2.9.5.data/scripts/tcfrom3col +0 -23
  399. rapidtide-2.9.5.data/scripts/temporaldecomp +0 -23
  400. rapidtide-2.9.5.data/scripts/threeD +0 -236
  401. rapidtide-2.9.5.data/scripts/tidepool +0 -23
  402. rapidtide-2.9.5.data/scripts/variabilityizer +0 -23
  403. rapidtide-2.9.5.dist-info/RECORD +0 -357
  404. rapidtide-2.9.5.dist-info/top_level.txt +0 -86
  405. {rapidtide-2.9.5.dist-info → rapidtide-3.1.3.dist-info/licenses}/LICENSE +0 -0
@@ -0,0 +1,793 @@
1
+ # Form implementation generated from reading ui file 'tidepoolTemplate.ui'
2
+ #
3
+ # Created by: PyQt6 UI code generator 6.8.1
4
+ #
5
+ # WARNING: Any manual changes made to this file will be lost when pyuic6 is
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+ # run again. Do not edit this file unless you know what you are doing.
7
+
8
+
9
+ from PyQt6 import QtCore, QtGui, QtWidgets
10
+
11
+
12
+ class Ui_MainWindow(object):
13
+ def setupUi(self, MainWindow):
14
+ MainWindow.setObjectName("MainWindow")
15
+ MainWindow.resize(1129, 909)
16
+ sizePolicy = QtWidgets.QSizePolicy(
17
+ QtWidgets.QSizePolicy.Policy.MinimumExpanding,
18
+ QtWidgets.QSizePolicy.Policy.MinimumExpanding,
19
+ )
20
+ sizePolicy.setHorizontalStretch(1)
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+ sizePolicy.setVerticalStretch(1)
22
+ sizePolicy.setHeightForWidth(MainWindow.sizePolicy().hasHeightForWidth())
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+ MainWindow.setSizePolicy(sizePolicy)
24
+ MainWindow.setMinimumSize(QtCore.QSize(256, 256))
25
+ MainWindow.setMaximumSize(QtCore.QSize(1400, 16777215))
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+ MainWindow.setSizeIncrement(QtCore.QSize(1, 1))
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+ self.centralwidget = QtWidgets.QWidget(parent=MainWindow)
28
+ self.centralwidget.setObjectName("centralwidget")
29
+ self.logOutput_groupBox = QtWidgets.QGroupBox(parent=self.centralwidget)
30
+ self.logOutput_groupBox.setGeometry(QtCore.QRect(440, 520, 671, 171))
31
+ sizePolicy = QtWidgets.QSizePolicy(
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+ QtWidgets.QSizePolicy.Policy.Expanding, QtWidgets.QSizePolicy.Policy.Expanding
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+ )
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+ sizePolicy.setHorizontalStretch(0)
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+ sizePolicy.setVerticalStretch(0)
36
+ sizePolicy.setHeightForWidth(self.logOutput_groupBox.sizePolicy().hasHeightForWidth())
37
+ self.logOutput_groupBox.setSizePolicy(sizePolicy)
38
+ self.logOutput_groupBox.setMinimumSize(QtCore.QSize(100, 100))
39
+ self.logOutput_groupBox.setMaximumSize(QtCore.QSize(700, 283))
40
+ self.logOutput_groupBox.setObjectName("logOutput_groupBox")
41
+ self.logOutput = QtWidgets.QTextEdit(parent=self.logOutput_groupBox)
42
+ self.logOutput.setGeometry(QtCore.QRect(10, 30, 651, 131))
43
+ font = QtGui.QFont()
44
+ font.setFamily("Courier")
45
+ font.setBold(True)
46
+ self.logOutput.setFont(font)
47
+ self.logOutput.setObjectName("logOutput")
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+ self.imageData_groupBox = QtWidgets.QGroupBox(parent=self.centralwidget)
49
+ self.imageData_groupBox.setGeometry(QtCore.QRect(10, 0, 1100, 312))
50
+ sizePolicy = QtWidgets.QSizePolicy(
51
+ QtWidgets.QSizePolicy.Policy.MinimumExpanding, QtWidgets.QSizePolicy.Policy.Preferred
52
+ )
53
+ sizePolicy.setHorizontalStretch(0)
54
+ sizePolicy.setVerticalStretch(0)
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+ sizePolicy.setHeightForWidth(self.imageData_groupBox.sizePolicy().hasHeightForWidth())
56
+ self.imageData_groupBox.setSizePolicy(sizePolicy)
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+ self.imageData_groupBox.setMinimumSize(QtCore.QSize(1100, 100))
58
+ self.imageData_groupBox.setMaximumSize(QtCore.QSize(1100, 312))
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+ self.imageData_groupBox.setObjectName("imageData_groupBox")
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+ self.label = QtWidgets.QLabel(parent=self.imageData_groupBox)
61
+ self.label.setGeometry(QtCore.QRect(10, 520, 521, 16))
62
+ self.label.setWordWrap(True)
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+ self.label.setObjectName("label")
64
+ self.layoutWidget = QtWidgets.QWidget(parent=self.imageData_groupBox)
65
+ self.layoutWidget.setGeometry(QtCore.QRect(10, 20, 1074, 286))
66
+ self.layoutWidget.setObjectName("layoutWidget")
67
+ self.largeimage_horizontalLayout = QtWidgets.QHBoxLayout(self.layoutWidget)
68
+ self.largeimage_horizontalLayout.setSizeConstraint(
69
+ QtWidgets.QLayout.SizeConstraint.SetNoConstraint
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+ )
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+ self.largeimage_horizontalLayout.setContentsMargins(0, 0, 0, 0)
72
+ self.largeimage_horizontalLayout.setObjectName("largeimage_horizontalLayout")
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+ self.main_graphicsView_ax = GraphicsLayoutWidget(parent=self.layoutWidget)
74
+ sizePolicy = QtWidgets.QSizePolicy(
75
+ QtWidgets.QSizePolicy.Policy.MinimumExpanding,
76
+ QtWidgets.QSizePolicy.Policy.MinimumExpanding,
77
+ )
78
+ sizePolicy.setHorizontalStretch(0)
79
+ sizePolicy.setVerticalStretch(0)
80
+ sizePolicy.setHeightForWidth(self.main_graphicsView_ax.sizePolicy().hasHeightForWidth())
81
+ self.main_graphicsView_ax.setSizePolicy(sizePolicy)
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+ self.main_graphicsView_ax.setMinimumSize(QtCore.QSize(256, 256))
83
+ self.main_graphicsView_ax.setMaximumSize(QtCore.QSize(256, 256))
84
+ self.main_graphicsView_ax.setSizeIncrement(QtCore.QSize(1, 1))
85
+ self.main_graphicsView_ax.setFrameShape(QtWidgets.QFrame.Shape.NoFrame)
86
+ self.main_graphicsView_ax.setAlignment(QtCore.Qt.AlignmentFlag.AlignCenter)
87
+ self.main_graphicsView_ax.setObjectName("main_graphicsView_ax")
88
+ self.largeimage_horizontalLayout.addWidget(self.main_graphicsView_ax)
89
+ self.main_graphicsView_cor = GraphicsLayoutWidget(parent=self.layoutWidget)
90
+ sizePolicy = QtWidgets.QSizePolicy(
91
+ QtWidgets.QSizePolicy.Policy.MinimumExpanding,
92
+ QtWidgets.QSizePolicy.Policy.MinimumExpanding,
93
+ )
94
+ sizePolicy.setHorizontalStretch(0)
95
+ sizePolicy.setVerticalStretch(0)
96
+ sizePolicy.setHeightForWidth(self.main_graphicsView_cor.sizePolicy().hasHeightForWidth())
97
+ self.main_graphicsView_cor.setSizePolicy(sizePolicy)
98
+ self.main_graphicsView_cor.setMinimumSize(QtCore.QSize(256, 256))
99
+ self.main_graphicsView_cor.setMaximumSize(QtCore.QSize(256, 256))
100
+ self.main_graphicsView_cor.setSizeIncrement(QtCore.QSize(1, 1))
101
+ self.main_graphicsView_cor.setFrameShape(QtWidgets.QFrame.Shape.NoFrame)
102
+ self.main_graphicsView_cor.setAlignment(QtCore.Qt.AlignmentFlag.AlignCenter)
103
+ self.main_graphicsView_cor.setObjectName("main_graphicsView_cor")
104
+ self.largeimage_horizontalLayout.addWidget(self.main_graphicsView_cor)
105
+ self.main_graphicsView_sag = GraphicsLayoutWidget(parent=self.layoutWidget)
106
+ sizePolicy = QtWidgets.QSizePolicy(
107
+ QtWidgets.QSizePolicy.Policy.MinimumExpanding,
108
+ QtWidgets.QSizePolicy.Policy.MinimumExpanding,
109
+ )
110
+ sizePolicy.setHorizontalStretch(0)
111
+ sizePolicy.setVerticalStretch(0)
112
+ sizePolicy.setHeightForWidth(self.main_graphicsView_sag.sizePolicy().hasHeightForWidth())
113
+ self.main_graphicsView_sag.setSizePolicy(sizePolicy)
114
+ self.main_graphicsView_sag.setMinimumSize(QtCore.QSize(256, 256))
115
+ self.main_graphicsView_sag.setMaximumSize(QtCore.QSize(256, 256))
116
+ self.main_graphicsView_sag.setSizeIncrement(QtCore.QSize(1, 1))
117
+ self.main_graphicsView_sag.setFrameShape(QtWidgets.QFrame.Shape.NoFrame)
118
+ self.main_graphicsView_sag.setAlignment(QtCore.Qt.AlignmentFlag.AlignCenter)
119
+ self.main_graphicsView_sag.setObjectName("main_graphicsView_sag")
120
+ self.largeimage_horizontalLayout.addWidget(self.main_graphicsView_sag)
121
+ self.graphicsView_colorbar = GraphicsView(parent=self.layoutWidget)
122
+ sizePolicy = QtWidgets.QSizePolicy(
123
+ QtWidgets.QSizePolicy.Policy.MinimumExpanding,
124
+ QtWidgets.QSizePolicy.Policy.MinimumExpanding,
125
+ )
126
+ sizePolicy.setHorizontalStretch(0)
127
+ sizePolicy.setVerticalStretch(0)
128
+ sizePolicy.setHeightForWidth(self.graphicsView_colorbar.sizePolicy().hasHeightForWidth())
129
+ self.graphicsView_colorbar.setSizePolicy(sizePolicy)
130
+ self.graphicsView_colorbar.setMinimumSize(QtCore.QSize(30, 128))
131
+ self.graphicsView_colorbar.setMaximumSize(QtCore.QSize(25, 256))
132
+ self.graphicsView_colorbar.setSizeIncrement(QtCore.QSize(1, 1))
133
+ self.graphicsView_colorbar.setObjectName("graphicsView_colorbar")
134
+ self.largeimage_horizontalLayout.addWidget(self.graphicsView_colorbar)
135
+ self.verticalLayout_3 = QtWidgets.QVBoxLayout()
136
+ self.verticalLayout_3.setSizeConstraint(QtWidgets.QLayout.SizeConstraint.SetMaximumSize)
137
+ self.verticalLayout_3.setContentsMargins(-1, 5, -1, 5)
138
+ self.verticalLayout_3.setSpacing(0)
139
+ self.verticalLayout_3.setObjectName("verticalLayout_3")
140
+ self.dispmax_doubleSpinBox = QtWidgets.QDoubleSpinBox(parent=self.layoutWidget)
141
+ self.dispmax_doubleSpinBox.setAlignment(
142
+ QtCore.Qt.AlignmentFlag.AlignRight
143
+ | QtCore.Qt.AlignmentFlag.AlignTrailing
144
+ | QtCore.Qt.AlignmentFlag.AlignVCenter
145
+ )
146
+ self.dispmax_doubleSpinBox.setDecimals(3)
147
+ self.dispmax_doubleSpinBox.setObjectName("dispmax_doubleSpinBox")
148
+ self.verticalLayout_3.addWidget(self.dispmax_doubleSpinBox)
149
+ spacerItem = QtWidgets.QSpacerItem(
150
+ 20, 40, QtWidgets.QSizePolicy.Policy.Minimum, QtWidgets.QSizePolicy.Policy.Expanding
151
+ )
152
+ self.verticalLayout_3.addItem(spacerItem)
153
+ self.resetDispLimits_Button = QtWidgets.QPushButton(parent=self.layoutWidget)
154
+ self.resetDispLimits_Button.setObjectName("resetDispLimits_Button")
155
+ self.verticalLayout_3.addWidget(self.resetDispLimits_Button)
156
+ self.resetDispSmart_Button = QtWidgets.QPushButton(parent=self.layoutWidget)
157
+ self.resetDispSmart_Button.setObjectName("resetDispSmart_Button")
158
+ self.verticalLayout_3.addWidget(self.resetDispSmart_Button)
159
+ self.saveDisp_Button = QtWidgets.QPushButton(parent=self.layoutWidget)
160
+ self.saveDisp_Button.setObjectName("saveDisp_Button")
161
+ self.verticalLayout_3.addWidget(self.saveDisp_Button)
162
+ self.setMask_Button = QtWidgets.QPushButton(parent=self.layoutWidget)
163
+ self.setMask_Button.setObjectName("setMask_Button")
164
+ self.verticalLayout_3.addWidget(self.setMask_Button)
165
+ spacerItem1 = QtWidgets.QSpacerItem(
166
+ 20, 40, QtWidgets.QSizePolicy.Policy.Minimum, QtWidgets.QSizePolicy.Policy.Expanding
167
+ )
168
+ self.verticalLayout_3.addItem(spacerItem1)
169
+ self.transparency_checkBox = QtWidgets.QCheckBox(parent=self.layoutWidget)
170
+ self.transparency_checkBox.setChecked(False)
171
+ self.transparency_checkBox.setObjectName("transparency_checkBox")
172
+ self.verticalLayout_3.addWidget(self.transparency_checkBox)
173
+ self.dispmin_doubleSpinBox = QtWidgets.QDoubleSpinBox(parent=self.layoutWidget)
174
+ self.dispmin_doubleSpinBox.setAlignment(
175
+ QtCore.Qt.AlignmentFlag.AlignRight
176
+ | QtCore.Qt.AlignmentFlag.AlignTrailing
177
+ | QtCore.Qt.AlignmentFlag.AlignVCenter
178
+ )
179
+ self.dispmin_doubleSpinBox.setDecimals(3)
180
+ self.dispmin_doubleSpinBox.setObjectName("dispmin_doubleSpinBox")
181
+ self.verticalLayout_3.addWidget(self.dispmin_doubleSpinBox)
182
+ self.largeimage_horizontalLayout.addLayout(self.verticalLayout_3)
183
+ self.verticalLayout_2 = QtWidgets.QVBoxLayout()
184
+ self.verticalLayout_2.setSpacing(0)
185
+ self.verticalLayout_2.setObjectName("verticalLayout_2")
186
+ self.colormap_verticalLayout = QtWidgets.QVBoxLayout()
187
+ self.colormap_verticalLayout.setObjectName("colormap_verticalLayout")
188
+ self.label_2 = QtWidgets.QLabel(parent=self.layoutWidget)
189
+ self.label_2.setMaximumSize(QtCore.QSize(16777215, 14))
190
+ self.label_2.setObjectName("label_2")
191
+ self.colormap_verticalLayout.addWidget(self.label_2)
192
+ self.gray_radioButton = QtWidgets.QRadioButton(parent=self.layoutWidget)
193
+ font = QtGui.QFont()
194
+ font.setPointSize(10)
195
+ self.gray_radioButton.setFont(font)
196
+ self.gray_radioButton.setObjectName("gray_radioButton")
197
+ self.colormap_buttonGroup = QtWidgets.QButtonGroup(MainWindow)
198
+ self.colormap_buttonGroup.setObjectName("colormap_buttonGroup")
199
+ self.colormap_buttonGroup.addButton(self.gray_radioButton)
200
+ self.colormap_verticalLayout.addWidget(self.gray_radioButton)
201
+ self.thermal_radioButton = QtWidgets.QRadioButton(parent=self.layoutWidget)
202
+ font = QtGui.QFont()
203
+ font.setPointSize(10)
204
+ self.thermal_radioButton.setFont(font)
205
+ self.thermal_radioButton.setObjectName("thermal_radioButton")
206
+ self.colormap_buttonGroup.addButton(self.thermal_radioButton)
207
+ self.colormap_verticalLayout.addWidget(self.thermal_radioButton)
208
+ self.plasma_radioButton = QtWidgets.QRadioButton(parent=self.layoutWidget)
209
+ font = QtGui.QFont()
210
+ font.setPointSize(10)
211
+ self.plasma_radioButton.setFont(font)
212
+ self.plasma_radioButton.setObjectName("plasma_radioButton")
213
+ self.colormap_buttonGroup.addButton(self.plasma_radioButton)
214
+ self.colormap_verticalLayout.addWidget(self.plasma_radioButton)
215
+ self.rainbow_radioButton = QtWidgets.QRadioButton(parent=self.layoutWidget)
216
+ font = QtGui.QFont()
217
+ font.setPointSize(10)
218
+ self.rainbow_radioButton.setFont(font)
219
+ self.rainbow_radioButton.setObjectName("rainbow_radioButton")
220
+ self.colormap_buttonGroup.addButton(self.rainbow_radioButton)
221
+ self.colormap_verticalLayout.addWidget(self.rainbow_radioButton)
222
+ self.viridis_radioButton = QtWidgets.QRadioButton(parent=self.layoutWidget)
223
+ font = QtGui.QFont()
224
+ font.setPointSize(10)
225
+ self.viridis_radioButton.setFont(font)
226
+ self.viridis_radioButton.setObjectName("viridis_radioButton")
227
+ self.colormap_buttonGroup.addButton(self.viridis_radioButton)
228
+ self.colormap_verticalLayout.addWidget(self.viridis_radioButton)
229
+ self.turbo_radioButton = QtWidgets.QRadioButton(parent=self.layoutWidget)
230
+ font = QtGui.QFont()
231
+ font.setPointSize(10)
232
+ self.turbo_radioButton.setFont(font)
233
+ self.turbo_radioButton.setObjectName("turbo_radioButton")
234
+ self.colormap_buttonGroup.addButton(self.turbo_radioButton)
235
+ self.colormap_verticalLayout.addWidget(self.turbo_radioButton)
236
+ self.aspects_verticalLayout = QtWidgets.QVBoxLayout()
237
+ self.aspects_verticalLayout.setSpacing(0)
238
+ self.aspects_verticalLayout.setObjectName("aspects_verticalLayout")
239
+ self.summary_Label = QtWidgets.QLabel(parent=self.layoutWidget)
240
+ self.summary_Label.setMaximumSize(QtCore.QSize(16777215, 14))
241
+ self.summary_Label.setObjectName("summary_Label")
242
+ self.aspects_verticalLayout.addWidget(self.summary_Label)
243
+ self.raw_radioButton = QtWidgets.QRadioButton(parent=self.layoutWidget)
244
+ font = QtGui.QFont()
245
+ font.setPointSize(10)
246
+ self.raw_radioButton.setFont(font)
247
+ self.raw_radioButton.setChecked(True)
248
+ self.raw_radioButton.setObjectName("raw_radioButton")
249
+ self.stats_buttonGroup = QtWidgets.QButtonGroup(MainWindow)
250
+ self.stats_buttonGroup.setObjectName("stats_buttonGroup")
251
+ self.stats_buttonGroup.addButton(self.raw_radioButton)
252
+ self.aspects_verticalLayout.addWidget(self.raw_radioButton)
253
+ self.mean_radioButton = QtWidgets.QRadioButton(parent=self.layoutWidget)
254
+ font = QtGui.QFont()
255
+ font.setPointSize(10)
256
+ self.mean_radioButton.setFont(font)
257
+ self.mean_radioButton.setChecked(False)
258
+ self.mean_radioButton.setObjectName("mean_radioButton")
259
+ self.stats_buttonGroup.addButton(self.mean_radioButton)
260
+ self.aspects_verticalLayout.addWidget(self.mean_radioButton)
261
+ self.median_radioButton = QtWidgets.QRadioButton(parent=self.layoutWidget)
262
+ font = QtGui.QFont()
263
+ font.setPointSize(10)
264
+ self.median_radioButton.setFont(font)
265
+ self.median_radioButton.setObjectName("median_radioButton")
266
+ self.stats_buttonGroup.addButton(self.median_radioButton)
267
+ self.aspects_verticalLayout.addWidget(self.median_radioButton)
268
+ self.CoV_radioButton = QtWidgets.QRadioButton(parent=self.layoutWidget)
269
+ font = QtGui.QFont()
270
+ font.setPointSize(10)
271
+ self.CoV_radioButton.setFont(font)
272
+ self.CoV_radioButton.setObjectName("CoV_radioButton")
273
+ self.stats_buttonGroup.addButton(self.CoV_radioButton)
274
+ self.aspects_verticalLayout.addWidget(self.CoV_radioButton)
275
+ self.std_radioButton = QtWidgets.QRadioButton(parent=self.layoutWidget)
276
+ font = QtGui.QFont()
277
+ font.setPointSize(10)
278
+ self.std_radioButton.setFont(font)
279
+ self.std_radioButton.setObjectName("std_radioButton")
280
+ self.stats_buttonGroup.addButton(self.std_radioButton)
281
+ self.aspects_verticalLayout.addWidget(self.std_radioButton)
282
+ self.MAD_radioButton = QtWidgets.QRadioButton(parent=self.layoutWidget)
283
+ font = QtGui.QFont()
284
+ font.setPointSize(10)
285
+ self.MAD_radioButton.setFont(font)
286
+ self.MAD_radioButton.setObjectName("MAD_radioButton")
287
+ self.stats_buttonGroup.addButton(self.MAD_radioButton)
288
+ self.aspects_verticalLayout.addWidget(self.MAD_radioButton)
289
+ self.colormap_verticalLayout.addLayout(self.aspects_verticalLayout)
290
+ self.verticalLayout_2.addLayout(self.colormap_verticalLayout)
291
+ self.largeimage_horizontalLayout.addLayout(self.verticalLayout_2)
292
+ self.overlays_groupBox = QtWidgets.QGroupBox(parent=self.centralwidget)
293
+ self.overlays_groupBox.setGeometry(QtCore.QRect(10, 315, 421, 376))
294
+ sizePolicy = QtWidgets.QSizePolicy(
295
+ QtWidgets.QSizePolicy.Policy.Minimum, QtWidgets.QSizePolicy.Policy.Preferred
296
+ )
297
+ sizePolicy.setHorizontalStretch(0)
298
+ sizePolicy.setVerticalStretch(0)
299
+ sizePolicy.setHeightForWidth(self.overlays_groupBox.sizePolicy().hasHeightForWidth())
300
+ self.overlays_groupBox.setSizePolicy(sizePolicy)
301
+ self.overlays_groupBox.setMinimumSize(QtCore.QSize(230, 0))
302
+ self.overlays_groupBox.setMaximumSize(QtCore.QSize(16777215, 683))
303
+ self.overlays_groupBox.setObjectName("overlays_groupBox")
304
+ self.overlay_radioButton_05 = QtWidgets.QRadioButton(parent=self.overlays_groupBox)
305
+ self.overlay_radioButton_05.setGeometry(QtCore.QRect(10, 260, 151, 20))
306
+ font = QtGui.QFont()
307
+ font.setPointSize(10)
308
+ self.overlay_radioButton_05.setFont(font)
309
+ self.overlay_radioButton_05.setObjectName("overlay_radioButton_05")
310
+ self.overlay_graphicsView_01 = GraphicsLayoutWidget(parent=self.overlays_groupBox)
311
+ self.overlay_graphicsView_01.setGeometry(QtCore.QRect(10, 30, 198, 64))
312
+ sizePolicy = QtWidgets.QSizePolicy(
313
+ QtWidgets.QSizePolicy.Policy.Preferred, QtWidgets.QSizePolicy.Policy.Preferred
314
+ )
315
+ sizePolicy.setHorizontalStretch(0)
316
+ sizePolicy.setVerticalStretch(0)
317
+ sizePolicy.setHeightForWidth(self.overlay_graphicsView_01.sizePolicy().hasHeightForWidth())
318
+ self.overlay_graphicsView_01.setSizePolicy(sizePolicy)
319
+ self.overlay_graphicsView_01.setMinimumSize(QtCore.QSize(198, 64))
320
+ self.overlay_graphicsView_01.setMaximumSize(QtCore.QSize(198, 64))
321
+ self.overlay_graphicsView_01.setFrameShape(QtWidgets.QFrame.Shape.NoFrame)
322
+ self.overlay_graphicsView_01.setAlignment(QtCore.Qt.AlignmentFlag.AlignCenter)
323
+ self.overlay_graphicsView_01.setObjectName("overlay_graphicsView_01")
324
+ self.overlay_radioButton_01 = QtWidgets.QRadioButton(parent=self.overlays_groupBox)
325
+ self.overlay_radioButton_01.setGeometry(QtCore.QRect(10, 90, 151, 20))
326
+ font = QtGui.QFont()
327
+ font.setPointSize(10)
328
+ self.overlay_radioButton_01.setFont(font)
329
+ self.overlay_radioButton_01.setObjectName("overlay_radioButton_01")
330
+ self.overlay_radioButton_02 = QtWidgets.QRadioButton(parent=self.overlays_groupBox)
331
+ self.overlay_radioButton_02.setGeometry(QtCore.QRect(220, 90, 151, 20))
332
+ font = QtGui.QFont()
333
+ font.setPointSize(10)
334
+ self.overlay_radioButton_02.setFont(font)
335
+ self.overlay_radioButton_02.setObjectName("overlay_radioButton_02")
336
+ self.overlay_radioButton_03 = QtWidgets.QRadioButton(parent=self.overlays_groupBox)
337
+ self.overlay_radioButton_03.setGeometry(QtCore.QRect(220, 175, 151, 20))
338
+ font = QtGui.QFont()
339
+ font.setPointSize(10)
340
+ self.overlay_radioButton_03.setFont(font)
341
+ self.overlay_radioButton_03.setObjectName("overlay_radioButton_03")
342
+ self.overlay_radioButton_04 = QtWidgets.QRadioButton(parent=self.overlays_groupBox)
343
+ self.overlay_radioButton_04.setGeometry(QtCore.QRect(10, 175, 151, 20))
344
+ font = QtGui.QFont()
345
+ font.setPointSize(10)
346
+ self.overlay_radioButton_04.setFont(font)
347
+ self.overlay_radioButton_04.setObjectName("overlay_radioButton_04")
348
+ self.corrout_radioButton = QtWidgets.QRadioButton(parent=self.overlays_groupBox)
349
+ self.corrout_radioButton.setGeometry(QtCore.QRect(10, 490, 151, 20))
350
+ self.corrout_radioButton.setChecked(True)
351
+ self.corrout_radioButton.setObjectName("corrout_radioButton")
352
+ self.overlay_radioButton_06 = QtWidgets.QRadioButton(parent=self.overlays_groupBox)
353
+ self.overlay_radioButton_06.setGeometry(QtCore.QRect(220, 260, 151, 20))
354
+ font = QtGui.QFont()
355
+ font.setPointSize(10)
356
+ self.overlay_radioButton_06.setFont(font)
357
+ self.overlay_radioButton_06.setObjectName("overlay_radioButton_06")
358
+ self.overlay_radioButton_07 = QtWidgets.QRadioButton(parent=self.overlays_groupBox)
359
+ self.overlay_radioButton_07.setGeometry(QtCore.QRect(10, 345, 151, 20))
360
+ font = QtGui.QFont()
361
+ font.setPointSize(10)
362
+ self.overlay_radioButton_07.setFont(font)
363
+ self.overlay_radioButton_07.setObjectName("overlay_radioButton_07")
364
+ self.overlay_radioButton_08 = QtWidgets.QRadioButton(parent=self.overlays_groupBox)
365
+ self.overlay_radioButton_08.setGeometry(QtCore.QRect(220, 345, 151, 20))
366
+ font = QtGui.QFont()
367
+ font.setPointSize(10)
368
+ self.overlay_radioButton_08.setFont(font)
369
+ self.overlay_radioButton_08.setObjectName("overlay_radioButton_08")
370
+ self.overlay_graphicsView_04 = GraphicsLayoutWidget(parent=self.overlays_groupBox)
371
+ self.overlay_graphicsView_04.setGeometry(QtCore.QRect(10, 115, 192, 64))
372
+ sizePolicy = QtWidgets.QSizePolicy(
373
+ QtWidgets.QSizePolicy.Policy.Preferred, QtWidgets.QSizePolicy.Policy.Preferred
374
+ )
375
+ sizePolicy.setHorizontalStretch(0)
376
+ sizePolicy.setVerticalStretch(0)
377
+ sizePolicy.setHeightForWidth(self.overlay_graphicsView_04.sizePolicy().hasHeightForWidth())
378
+ self.overlay_graphicsView_04.setSizePolicy(sizePolicy)
379
+ self.overlay_graphicsView_04.setMinimumSize(QtCore.QSize(192, 64))
380
+ self.overlay_graphicsView_04.setMaximumSize(QtCore.QSize(192, 64))
381
+ self.overlay_graphicsView_04.setFrameShape(QtWidgets.QFrame.Shape.NoFrame)
382
+ self.overlay_graphicsView_04.setAlignment(QtCore.Qt.AlignmentFlag.AlignCenter)
383
+ self.overlay_graphicsView_04.setObjectName("overlay_graphicsView_04")
384
+ self.overlay_graphicsView_06 = GraphicsLayoutWidget(parent=self.overlays_groupBox)
385
+ self.overlay_graphicsView_06.setGeometry(QtCore.QRect(220, 200, 192, 64))
386
+ sizePolicy = QtWidgets.QSizePolicy(
387
+ QtWidgets.QSizePolicy.Policy.Preferred, QtWidgets.QSizePolicy.Policy.Preferred
388
+ )
389
+ sizePolicy.setHorizontalStretch(0)
390
+ sizePolicy.setVerticalStretch(0)
391
+ sizePolicy.setHeightForWidth(self.overlay_graphicsView_06.sizePolicy().hasHeightForWidth())
392
+ self.overlay_graphicsView_06.setSizePolicy(sizePolicy)
393
+ self.overlay_graphicsView_06.setMinimumSize(QtCore.QSize(192, 64))
394
+ self.overlay_graphicsView_06.setMaximumSize(QtCore.QSize(192, 64))
395
+ self.overlay_graphicsView_06.setFrameShape(QtWidgets.QFrame.Shape.NoFrame)
396
+ self.overlay_graphicsView_06.setAlignment(QtCore.Qt.AlignmentFlag.AlignCenter)
397
+ self.overlay_graphicsView_06.setObjectName("overlay_graphicsView_06")
398
+ self.overlay_graphicsView_03 = GraphicsLayoutWidget(parent=self.overlays_groupBox)
399
+ self.overlay_graphicsView_03.setGeometry(QtCore.QRect(220, 115, 192, 64))
400
+ sizePolicy = QtWidgets.QSizePolicy(
401
+ QtWidgets.QSizePolicy.Policy.Preferred, QtWidgets.QSizePolicy.Policy.Preferred
402
+ )
403
+ sizePolicy.setHorizontalStretch(0)
404
+ sizePolicy.setVerticalStretch(0)
405
+ sizePolicy.setHeightForWidth(self.overlay_graphicsView_03.sizePolicy().hasHeightForWidth())
406
+ self.overlay_graphicsView_03.setSizePolicy(sizePolicy)
407
+ self.overlay_graphicsView_03.setMinimumSize(QtCore.QSize(192, 64))
408
+ self.overlay_graphicsView_03.setMaximumSize(QtCore.QSize(192, 64))
409
+ self.overlay_graphicsView_03.setFrameShape(QtWidgets.QFrame.Shape.NoFrame)
410
+ self.overlay_graphicsView_03.setAlignment(QtCore.Qt.AlignmentFlag.AlignCenter)
411
+ self.overlay_graphicsView_03.setObjectName("overlay_graphicsView_03")
412
+ self.overlay_graphicsView_08 = GraphicsLayoutWidget(parent=self.overlays_groupBox)
413
+ self.overlay_graphicsView_08.setGeometry(QtCore.QRect(220, 285, 192, 64))
414
+ sizePolicy = QtWidgets.QSizePolicy(
415
+ QtWidgets.QSizePolicy.Policy.Preferred, QtWidgets.QSizePolicy.Policy.Preferred
416
+ )
417
+ sizePolicy.setHorizontalStretch(0)
418
+ sizePolicy.setVerticalStretch(0)
419
+ sizePolicy.setHeightForWidth(self.overlay_graphicsView_08.sizePolicy().hasHeightForWidth())
420
+ self.overlay_graphicsView_08.setSizePolicy(sizePolicy)
421
+ self.overlay_graphicsView_08.setMinimumSize(QtCore.QSize(192, 64))
422
+ self.overlay_graphicsView_08.setMaximumSize(QtCore.QSize(192, 64))
423
+ self.overlay_graphicsView_08.setFrameShape(QtWidgets.QFrame.Shape.NoFrame)
424
+ self.overlay_graphicsView_08.setAlignment(QtCore.Qt.AlignmentFlag.AlignCenter)
425
+ self.overlay_graphicsView_08.setObjectName("overlay_graphicsView_08")
426
+ self.overlay_graphicsView_05 = GraphicsLayoutWidget(parent=self.overlays_groupBox)
427
+ self.overlay_graphicsView_05.setGeometry(QtCore.QRect(10, 200, 192, 64))
428
+ sizePolicy = QtWidgets.QSizePolicy(
429
+ QtWidgets.QSizePolicy.Policy.Preferred, QtWidgets.QSizePolicy.Policy.Preferred
430
+ )
431
+ sizePolicy.setHorizontalStretch(0)
432
+ sizePolicy.setVerticalStretch(0)
433
+ sizePolicy.setHeightForWidth(self.overlay_graphicsView_05.sizePolicy().hasHeightForWidth())
434
+ self.overlay_graphicsView_05.setSizePolicy(sizePolicy)
435
+ self.overlay_graphicsView_05.setMinimumSize(QtCore.QSize(192, 64))
436
+ self.overlay_graphicsView_05.setMaximumSize(QtCore.QSize(192, 64))
437
+ self.overlay_graphicsView_05.setFrameShape(QtWidgets.QFrame.Shape.NoFrame)
438
+ self.overlay_graphicsView_05.setAlignment(QtCore.Qt.AlignmentFlag.AlignCenter)
439
+ self.overlay_graphicsView_05.setObjectName("overlay_graphicsView_05")
440
+ self.overlay_graphicsView_02 = GraphicsLayoutWidget(parent=self.overlays_groupBox)
441
+ self.overlay_graphicsView_02.setGeometry(QtCore.QRect(220, 30, 192, 64))
442
+ sizePolicy = QtWidgets.QSizePolicy(
443
+ QtWidgets.QSizePolicy.Policy.Preferred, QtWidgets.QSizePolicy.Policy.Preferred
444
+ )
445
+ sizePolicy.setHorizontalStretch(0)
446
+ sizePolicy.setVerticalStretch(0)
447
+ sizePolicy.setHeightForWidth(self.overlay_graphicsView_02.sizePolicy().hasHeightForWidth())
448
+ self.overlay_graphicsView_02.setSizePolicy(sizePolicy)
449
+ self.overlay_graphicsView_02.setMinimumSize(QtCore.QSize(192, 64))
450
+ self.overlay_graphicsView_02.setMaximumSize(QtCore.QSize(192, 64))
451
+ self.overlay_graphicsView_02.setFrameShape(QtWidgets.QFrame.Shape.NoFrame)
452
+ self.overlay_graphicsView_02.setAlignment(QtCore.Qt.AlignmentFlag.AlignCenter)
453
+ self.overlay_graphicsView_02.setObjectName("overlay_graphicsView_02")
454
+ self.overlay_graphicsView_07 = GraphicsLayoutWidget(parent=self.overlays_groupBox)
455
+ self.overlay_graphicsView_07.setGeometry(QtCore.QRect(10, 285, 192, 64))
456
+ sizePolicy = QtWidgets.QSizePolicy(
457
+ QtWidgets.QSizePolicy.Policy.Preferred, QtWidgets.QSizePolicy.Policy.Preferred
458
+ )
459
+ sizePolicy.setHorizontalStretch(0)
460
+ sizePolicy.setVerticalStretch(0)
461
+ sizePolicy.setHeightForWidth(self.overlay_graphicsView_07.sizePolicy().hasHeightForWidth())
462
+ self.overlay_graphicsView_07.setSizePolicy(sizePolicy)
463
+ self.overlay_graphicsView_07.setMinimumSize(QtCore.QSize(192, 64))
464
+ self.overlay_graphicsView_07.setMaximumSize(QtCore.QSize(192, 64))
465
+ self.overlay_graphicsView_07.setFrameShape(QtWidgets.QFrame.Shape.NoFrame)
466
+ self.overlay_graphicsView_07.setAlignment(QtCore.Qt.AlignmentFlag.AlignCenter)
467
+ self.overlay_graphicsView_07.setObjectName("overlay_graphicsView_07")
468
+ self.overlay_graphicsView_01.raise_()
469
+ self.overlay_radioButton_01.raise_()
470
+ self.overlay_radioButton_02.raise_()
471
+ self.overlay_radioButton_03.raise_()
472
+ self.overlay_radioButton_04.raise_()
473
+ self.corrout_radioButton.raise_()
474
+ self.overlay_radioButton_05.raise_()
475
+ self.overlay_radioButton_06.raise_()
476
+ self.overlay_radioButton_07.raise_()
477
+ self.overlay_radioButton_08.raise_()
478
+ self.overlay_graphicsView_04.raise_()
479
+ self.overlay_graphicsView_06.raise_()
480
+ self.overlay_graphicsView_03.raise_()
481
+ self.overlay_graphicsView_08.raise_()
482
+ self.overlay_graphicsView_05.raise_()
483
+ self.overlay_graphicsView_02.raise_()
484
+ self.overlay_graphicsView_07.raise_()
485
+ self.histogram_groupBox = QtWidgets.QGroupBox(parent=self.centralwidget)
486
+ self.histogram_groupBox.setGeometry(QtCore.QRect(440, 315, 381, 201))
487
+ sizePolicy = QtWidgets.QSizePolicy(
488
+ QtWidgets.QSizePolicy.Policy.Expanding, QtWidgets.QSizePolicy.Policy.Expanding
489
+ )
490
+ sizePolicy.setHorizontalStretch(0)
491
+ sizePolicy.setVerticalStretch(0)
492
+ sizePolicy.setHeightForWidth(self.histogram_groupBox.sizePolicy().hasHeightForWidth())
493
+ self.histogram_groupBox.setSizePolicy(sizePolicy)
494
+ self.histogram_groupBox.setMinimumSize(QtCore.QSize(100, 100))
495
+ self.histogram_groupBox.setMaximumSize(QtCore.QSize(500, 1000))
496
+ self.histogram_groupBox.setObjectName("histogram_groupBox")
497
+ self.histogram_graphicsView = GraphicsLayoutWidget(parent=self.histogram_groupBox)
498
+ self.histogram_graphicsView.setGeometry(QtCore.QRect(10, 30, 361, 161))
499
+ sizePolicy = QtWidgets.QSizePolicy(
500
+ QtWidgets.QSizePolicy.Policy.Expanding, QtWidgets.QSizePolicy.Policy.MinimumExpanding
501
+ )
502
+ sizePolicy.setHorizontalStretch(0)
503
+ sizePolicy.setVerticalStretch(0)
504
+ sizePolicy.setHeightForWidth(self.histogram_graphicsView.sizePolicy().hasHeightForWidth())
505
+ self.histogram_graphicsView.setSizePolicy(sizePolicy)
506
+ self.histogram_graphicsView.setMinimumSize(QtCore.QSize(0, 100))
507
+ self.histogram_graphicsView.setMaximumSize(QtCore.QSize(1000, 1000))
508
+ self.histogram_graphicsView.setObjectName("histogram_graphicsView")
509
+ self.mainimagedata_groupBox = QtWidgets.QGroupBox(parent=self.centralwidget)
510
+ self.mainimagedata_groupBox.setGeometry(QtCore.QRect(830, 315, 281, 201))
511
+ self.mainimagedata_groupBox.setObjectName("mainimagedata_groupBox")
512
+ self.label_4 = QtWidgets.QLabel(parent=self.mainimagedata_groupBox)
513
+ self.label_4.setGeometry(QtCore.QRect(10, 35, 16, 16))
514
+ self.label_4.setObjectName("label_4")
515
+ self.pixnumX_doubleSpinBox = QtWidgets.QDoubleSpinBox(parent=self.mainimagedata_groupBox)
516
+ self.pixnumX_doubleSpinBox.setGeometry(QtCore.QRect(30, 30, 67, 24))
517
+ self.pixnumX_doubleSpinBox.setAlignment(
518
+ QtCore.Qt.AlignmentFlag.AlignRight
519
+ | QtCore.Qt.AlignmentFlag.AlignTrailing
520
+ | QtCore.Qt.AlignmentFlag.AlignVCenter
521
+ )
522
+ self.pixnumX_doubleSpinBox.setDecimals(0)
523
+ self.pixnumX_doubleSpinBox.setObjectName("pixnumX_doubleSpinBox")
524
+ self.label_7 = QtWidgets.QLabel(parent=self.mainimagedata_groupBox)
525
+ self.label_7.setGeometry(QtCore.QRect(30, 20, 56, 13))
526
+ font = QtGui.QFont()
527
+ font.setPointSize(11)
528
+ self.label_7.setFont(font)
529
+ self.label_7.setObjectName("label_7")
530
+ self.coordX_doubleSpinBox = QtWidgets.QDoubleSpinBox(parent=self.mainimagedata_groupBox)
531
+ self.coordX_doubleSpinBox.setGeometry(QtCore.QRect(100, 30, 67, 24))
532
+ self.coordX_doubleSpinBox.setAlignment(
533
+ QtCore.Qt.AlignmentFlag.AlignRight
534
+ | QtCore.Qt.AlignmentFlag.AlignTrailing
535
+ | QtCore.Qt.AlignmentFlag.AlignVCenter
536
+ )
537
+ self.coordX_doubleSpinBox.setDecimals(3)
538
+ self.coordX_doubleSpinBox.setObjectName("coordX_doubleSpinBox")
539
+ self.label_9 = QtWidgets.QLabel(parent=self.mainimagedata_groupBox)
540
+ self.label_9.setGeometry(QtCore.QRect(100, 20, 56, 13))
541
+ font = QtGui.QFont()
542
+ font.setPointSize(11)
543
+ self.label_9.setFont(font)
544
+ self.label_9.setObjectName("label_9")
545
+ self.pixnumY_doubleSpinBox = QtWidgets.QDoubleSpinBox(parent=self.mainimagedata_groupBox)
546
+ self.pixnumY_doubleSpinBox.setGeometry(QtCore.QRect(30, 55, 67, 24))
547
+ self.pixnumY_doubleSpinBox.setAlignment(
548
+ QtCore.Qt.AlignmentFlag.AlignRight
549
+ | QtCore.Qt.AlignmentFlag.AlignTrailing
550
+ | QtCore.Qt.AlignmentFlag.AlignVCenter
551
+ )
552
+ self.pixnumY_doubleSpinBox.setDecimals(0)
553
+ self.pixnumY_doubleSpinBox.setObjectName("pixnumY_doubleSpinBox")
554
+ self.coordY_doubleSpinBox = QtWidgets.QDoubleSpinBox(parent=self.mainimagedata_groupBox)
555
+ self.coordY_doubleSpinBox.setGeometry(QtCore.QRect(100, 55, 67, 24))
556
+ self.coordY_doubleSpinBox.setAlignment(
557
+ QtCore.Qt.AlignmentFlag.AlignRight
558
+ | QtCore.Qt.AlignmentFlag.AlignTrailing
559
+ | QtCore.Qt.AlignmentFlag.AlignVCenter
560
+ )
561
+ self.coordY_doubleSpinBox.setDecimals(3)
562
+ self.coordY_doubleSpinBox.setObjectName("coordY_doubleSpinBox")
563
+ self.pixnumZ_doubleSpinBox = QtWidgets.QDoubleSpinBox(parent=self.mainimagedata_groupBox)
564
+ self.pixnumZ_doubleSpinBox.setGeometry(QtCore.QRect(30, 80, 67, 24))
565
+ self.pixnumZ_doubleSpinBox.setAlignment(
566
+ QtCore.Qt.AlignmentFlag.AlignRight
567
+ | QtCore.Qt.AlignmentFlag.AlignTrailing
568
+ | QtCore.Qt.AlignmentFlag.AlignVCenter
569
+ )
570
+ self.pixnumZ_doubleSpinBox.setDecimals(0)
571
+ self.pixnumZ_doubleSpinBox.setObjectName("pixnumZ_doubleSpinBox")
572
+ self.coordZ_doubleSpinBox = QtWidgets.QDoubleSpinBox(parent=self.mainimagedata_groupBox)
573
+ self.coordZ_doubleSpinBox.setGeometry(QtCore.QRect(100, 80, 67, 24))
574
+ self.coordZ_doubleSpinBox.setAlignment(
575
+ QtCore.Qt.AlignmentFlag.AlignRight
576
+ | QtCore.Qt.AlignmentFlag.AlignTrailing
577
+ | QtCore.Qt.AlignmentFlag.AlignVCenter
578
+ )
579
+ self.coordZ_doubleSpinBox.setDecimals(3)
580
+ self.coordZ_doubleSpinBox.setObjectName("coordZ_doubleSpinBox")
581
+ self.label_6 = QtWidgets.QLabel(parent=self.mainimagedata_groupBox)
582
+ self.label_6.setGeometry(QtCore.QRect(10, 60, 16, 16))
583
+ self.label_6.setObjectName("label_6")
584
+ self.label_8 = QtWidgets.QLabel(parent=self.mainimagedata_groupBox)
585
+ self.label_8.setGeometry(QtCore.QRect(10, 85, 16, 16))
586
+ self.label_8.setObjectName("label_8")
587
+ self.coordT_doubleSpinBox = QtWidgets.QDoubleSpinBox(parent=self.mainimagedata_groupBox)
588
+ self.coordT_doubleSpinBox.setGeometry(QtCore.QRect(100, 130, 67, 24))
589
+ self.coordT_doubleSpinBox.setAlignment(
590
+ QtCore.Qt.AlignmentFlag.AlignRight
591
+ | QtCore.Qt.AlignmentFlag.AlignTrailing
592
+ | QtCore.Qt.AlignmentFlag.AlignVCenter
593
+ )
594
+ self.coordT_doubleSpinBox.setDecimals(3)
595
+ self.coordT_doubleSpinBox.setObjectName("coordT_doubleSpinBox")
596
+ self.pixnumT_doubleSpinBox = QtWidgets.QDoubleSpinBox(parent=self.mainimagedata_groupBox)
597
+ self.pixnumT_doubleSpinBox.setGeometry(QtCore.QRect(30, 130, 67, 24))
598
+ self.pixnumT_doubleSpinBox.setAlignment(
599
+ QtCore.Qt.AlignmentFlag.AlignRight
600
+ | QtCore.Qt.AlignmentFlag.AlignTrailing
601
+ | QtCore.Qt.AlignmentFlag.AlignVCenter
602
+ )
603
+ self.pixnumT_doubleSpinBox.setDecimals(0)
604
+ self.pixnumT_doubleSpinBox.setObjectName("pixnumT_doubleSpinBox")
605
+ self.label_3 = QtWidgets.QLabel(parent=self.mainimagedata_groupBox)
606
+ self.label_3.setGeometry(QtCore.QRect(10, 135, 16, 16))
607
+ self.label_3.setObjectName("label_3")
608
+ self.TimeSlider = QtWidgets.QSlider(parent=self.mainimagedata_groupBox)
609
+ self.TimeSlider.setGeometry(QtCore.QRect(10, 165, 261, 22))
610
+ self.TimeSlider.setOrientation(QtCore.Qt.Orientation.Horizontal)
611
+ self.TimeSlider.setObjectName("TimeSlider")
612
+ self.label_10 = QtWidgets.QLabel(parent=self.mainimagedata_groupBox)
613
+ self.label_10.setGeometry(QtCore.QRect(30, 120, 56, 13))
614
+ font = QtGui.QFont()
615
+ font.setPointSize(11)
616
+ self.label_10.setFont(font)
617
+ self.label_10.setObjectName("label_10")
618
+ self.label_11 = QtWidgets.QLabel(parent=self.mainimagedata_groupBox)
619
+ self.label_11.setGeometry(QtCore.QRect(100, 120, 56, 13))
620
+ font = QtGui.QFont()
621
+ font.setPointSize(11)
622
+ self.label_11.setFont(font)
623
+ self.label_11.setObjectName("label_11")
624
+ self.runMovieButton = QtWidgets.QPushButton(parent=self.mainimagedata_groupBox)
625
+ self.runMovieButton.setGeometry(QtCore.QRect(170, 127, 110, 32))
626
+ self.runMovieButton.setObjectName("runMovieButton")
627
+ self.regressor_groupBox = QtWidgets.QGroupBox(parent=self.centralwidget)
628
+ self.regressor_groupBox.setGeometry(QtCore.QRect(10, 690, 1101, 181))
629
+ sizePolicy = QtWidgets.QSizePolicy(
630
+ QtWidgets.QSizePolicy.Policy.Expanding, QtWidgets.QSizePolicy.Policy.Expanding
631
+ )
632
+ sizePolicy.setHorizontalStretch(0)
633
+ sizePolicy.setVerticalStretch(0)
634
+ sizePolicy.setHeightForWidth(self.regressor_groupBox.sizePolicy().hasHeightForWidth())
635
+ self.regressor_groupBox.setSizePolicy(sizePolicy)
636
+ self.regressor_groupBox.setMinimumSize(QtCore.QSize(100, 100))
637
+ self.regressor_groupBox.setMaximumSize(QtCore.QSize(1500, 1000))
638
+ self.regressor_groupBox.setObjectName("regressor_groupBox")
639
+ self.regressorspectrum_graphicsView = GraphicsLayoutWidget(parent=self.regressor_groupBox)
640
+ self.regressorspectrum_graphicsView.setGeometry(QtCore.QRect(490, 23, 472, 131))
641
+ sizePolicy = QtWidgets.QSizePolicy(
642
+ QtWidgets.QSizePolicy.Policy.MinimumExpanding, QtWidgets.QSizePolicy.Policy.Preferred
643
+ )
644
+ sizePolicy.setHorizontalStretch(0)
645
+ sizePolicy.setVerticalStretch(0)
646
+ sizePolicy.setHeightForWidth(
647
+ self.regressorspectrum_graphicsView.sizePolicy().hasHeightForWidth()
648
+ )
649
+ self.regressorspectrum_graphicsView.setSizePolicy(sizePolicy)
650
+ self.regressorspectrum_graphicsView.setMinimumSize(QtCore.QSize(100, 100))
651
+ self.regressorspectrum_graphicsView.setMaximumSize(QtCore.QSize(1000, 1000))
652
+ self.regressorspectrum_graphicsView.setSizeIncrement(QtCore.QSize(1, 1))
653
+ self.regressorspectrum_graphicsView.setObjectName("regressorspectrum_graphicsView")
654
+ self.regressortimecourse_graphicsView = GraphicsLayoutWidget(
655
+ parent=self.regressor_groupBox
656
+ )
657
+ self.regressortimecourse_graphicsView.setEnabled(True)
658
+ self.regressortimecourse_graphicsView.setGeometry(QtCore.QRect(10, 23, 472, 131))
659
+ sizePolicy = QtWidgets.QSizePolicy(
660
+ QtWidgets.QSizePolicy.Policy.MinimumExpanding, QtWidgets.QSizePolicy.Policy.Preferred
661
+ )
662
+ sizePolicy.setHorizontalStretch(0)
663
+ sizePolicy.setVerticalStretch(0)
664
+ sizePolicy.setHeightForWidth(
665
+ self.regressortimecourse_graphicsView.sizePolicy().hasHeightForWidth()
666
+ )
667
+ self.regressortimecourse_graphicsView.setSizePolicy(sizePolicy)
668
+ self.regressortimecourse_graphicsView.setMinimumSize(QtCore.QSize(100, 100))
669
+ self.regressortimecourse_graphicsView.setMaximumSize(QtCore.QSize(1000, 1000))
670
+ self.regressortimecourse_graphicsView.setSizeIncrement(QtCore.QSize(1, 1))
671
+ self.regressortimecourse_graphicsView.setObjectName("regressortimecourse_graphicsView")
672
+ self.processingstage_groupBox = QtWidgets.QGroupBox(parent=self.regressor_groupBox)
673
+ self.processingstage_groupBox.setGeometry(QtCore.QRect(979, 14, 120, 151))
674
+ self.processingstage_groupBox.setObjectName("processingstage_groupBox")
675
+ self.verticalLayoutWidget = QtWidgets.QWidget(parent=self.processingstage_groupBox)
676
+ self.verticalLayoutWidget.setGeometry(QtCore.QRect(10, 25, 101, 115))
677
+ self.verticalLayoutWidget.setObjectName("verticalLayoutWidget")
678
+ self.verticalLayout = QtWidgets.QVBoxLayout(self.verticalLayoutWidget)
679
+ self.verticalLayout.setContentsMargins(0, 0, 0, 0)
680
+ self.verticalLayout.setObjectName("verticalLayout")
681
+ self.prefilt_radioButton = QtWidgets.QRadioButton(parent=self.verticalLayoutWidget)
682
+ self.prefilt_radioButton.setChecked(True)
683
+ self.prefilt_radioButton.setObjectName("prefilt_radioButton")
684
+ self.verticalLayout.addWidget(self.prefilt_radioButton)
685
+ self.postfilt_radioButton = QtWidgets.QRadioButton(parent=self.verticalLayoutWidget)
686
+ self.postfilt_radioButton.setChecked(False)
687
+ self.postfilt_radioButton.setObjectName("postfilt_radioButton")
688
+ self.verticalLayout.addWidget(self.postfilt_radioButton)
689
+ self.pass1_radioButton = QtWidgets.QRadioButton(parent=self.verticalLayoutWidget)
690
+ self.pass1_radioButton.setObjectName("pass1_radioButton")
691
+ self.verticalLayout.addWidget(self.pass1_radioButton)
692
+ self.pass2_radioButton = QtWidgets.QRadioButton(parent=self.verticalLayoutWidget)
693
+ self.pass2_radioButton.setObjectName("pass2_radioButton")
694
+ self.verticalLayout.addWidget(self.pass2_radioButton)
695
+ self.pass3_radioButton = QtWidgets.QRadioButton(parent=self.verticalLayoutWidget)
696
+ self.pass3_radioButton.setObjectName("pass3_radioButton")
697
+ self.verticalLayout.addWidget(self.pass3_radioButton)
698
+ self.pass4_radioButton = QtWidgets.QRadioButton(parent=self.verticalLayoutWidget)
699
+ self.pass4_radioButton.setObjectName("pass4_radioButton")
700
+ self.verticalLayout.addWidget(self.pass4_radioButton)
701
+ self.label_5 = QtWidgets.QLabel(parent=self.regressor_groupBox)
702
+ self.label_5.setGeometry(QtCore.QRect(160, 155, 161, 16))
703
+ self.label_5.setAlignment(QtCore.Qt.AlignmentFlag.AlignCenter)
704
+ self.label_5.setObjectName("label_5")
705
+ self.label_12 = QtWidgets.QLabel(parent=self.regressor_groupBox)
706
+ self.label_12.setGeometry(QtCore.QRect(660, 155, 131, 16))
707
+ self.label_12.setAlignment(QtCore.Qt.AlignmentFlag.AlignCenter)
708
+ self.label_12.setObjectName("label_12")
709
+ MainWindow.setCentralWidget(self.centralwidget)
710
+ self.menubar = QtWidgets.QMenuBar(parent=MainWindow)
711
+ self.menubar.setGeometry(QtCore.QRect(0, 0, 1129, 24))
712
+ self.menubar.setObjectName("menubar")
713
+ MainWindow.setMenuBar(self.menubar)
714
+ self.statusbar = QtWidgets.QStatusBar(parent=MainWindow)
715
+ self.statusbar.setObjectName("statusbar")
716
+ MainWindow.setStatusBar(self.statusbar)
717
+ self.actionQuit = QtGui.QAction(parent=MainWindow)
718
+ self.actionQuit.setObjectName("actionQuit")
719
+
720
+ self.retranslateUi(MainWindow)
721
+ QtCore.QMetaObject.connectSlotsByName(MainWindow)
722
+
723
+ def retranslateUi(self, MainWindow):
724
+ _translate = QtCore.QCoreApplication.translate
725
+ MainWindow.setWindowTitle(_translate("MainWindow", "MainWindow"))
726
+ self.logOutput_groupBox.setTitle(_translate("MainWindow", "Information"))
727
+ self.imageData_groupBox.setTitle(_translate("MainWindow", "Image Data"))
728
+ self.label.setText(
729
+ _translate(
730
+ "MainWindow",
731
+ "Click in image to position ROI. Drag right or left to increase or decrease the ROI size",
732
+ )
733
+ )
734
+ self.resetDispLimits_Button.setText(_translate("MainWindow", "Full Range"))
735
+ self.resetDispSmart_Button.setText(_translate("MainWindow", "Smart"))
736
+ self.saveDisp_Button.setText(_translate("MainWindow", "Save"))
737
+ self.setMask_Button.setText(_translate("MainWindow", "No mask"))
738
+ self.transparency_checkBox.setToolTip(
739
+ _translate(
740
+ "MainWindow",
741
+ "With transparency on, map values outside the range limits are not displayed.",
742
+ )
743
+ )
744
+ self.transparency_checkBox.setText(_translate("MainWindow", "Transparency"))
745
+ self.label_2.setText(_translate("MainWindow", "Colormap"))
746
+ self.gray_radioButton.setText(_translate("MainWindow", "Gray"))
747
+ self.thermal_radioButton.setText(_translate("MainWindow", "Thermal"))
748
+ self.plasma_radioButton.setText(_translate("MainWindow", "Plasma"))
749
+ self.rainbow_radioButton.setText(_translate("MainWindow", "Rainbow"))
750
+ self.viridis_radioButton.setText(_translate("MainWindow", "Viridis"))
751
+ self.turbo_radioButton.setText(_translate("MainWindow", "Turbo"))
752
+ self.summary_Label.setText(_translate("MainWindow", "Region summaries"))
753
+ self.raw_radioButton.setText(_translate("MainWindow", "Raw data"))
754
+ self.mean_radioButton.setText(_translate("MainWindow", "Mean"))
755
+ self.median_radioButton.setText(_translate("MainWindow", "Median"))
756
+ self.CoV_radioButton.setText(_translate("MainWindow", "CoV"))
757
+ self.std_radioButton.setText(_translate("MainWindow", "Std dev"))
758
+ self.MAD_radioButton.setText(_translate("MainWindow", "MAD"))
759
+ self.overlays_groupBox.setTitle(_translate("MainWindow", "Overlays"))
760
+ self.overlay_radioButton_05.setText(_translate("MainWindow", "Mask"))
761
+ self.overlay_radioButton_01.setText(_translate("MainWindow", "Lag times"))
762
+ self.overlay_radioButton_02.setText(_translate("MainWindow", "Correlation strength"))
763
+ self.overlay_radioButton_03.setText(_translate("MainWindow", "MTT"))
764
+ self.overlay_radioButton_04.setText(_translate("MainWindow", "R2"))
765
+ self.corrout_radioButton.setText(_translate("MainWindow", "Correlation function"))
766
+ self.overlay_radioButton_06.setText(_translate("MainWindow", "Mask"))
767
+ self.overlay_radioButton_07.setText(_translate("MainWindow", "Mask"))
768
+ self.overlay_radioButton_08.setText(_translate("MainWindow", "Mask"))
769
+ self.histogram_groupBox.setTitle(_translate("MainWindow", "Overlay Histogram"))
770
+ self.mainimagedata_groupBox.setTitle(_translate("MainWindow", "Location"))
771
+ self.label_4.setText(_translate("MainWindow", "X"))
772
+ self.label_7.setText(_translate("MainWindow", "Voxel"))
773
+ self.label_9.setText(_translate("MainWindow", "mm"))
774
+ self.label_6.setText(_translate("MainWindow", "Y"))
775
+ self.label_8.setText(_translate("MainWindow", "Z"))
776
+ self.label_3.setText(_translate("MainWindow", "T"))
777
+ self.label_10.setText(_translate("MainWindow", "Timepoint"))
778
+ self.label_11.setText(_translate("MainWindow", "seconds"))
779
+ self.runMovieButton.setText(_translate("MainWindow", "Start Movie"))
780
+ self.regressor_groupBox.setTitle(_translate("MainWindow", "Probe regressor"))
781
+ self.processingstage_groupBox.setTitle(_translate("MainWindow", "Processing stage"))
782
+ self.prefilt_radioButton.setText(_translate("MainWindow", "Prefilt"))
783
+ self.postfilt_radioButton.setText(_translate("MainWindow", "Postfilt"))
784
+ self.pass1_radioButton.setText(_translate("MainWindow", "Pass 1"))
785
+ self.pass2_radioButton.setText(_translate("MainWindow", "Pass 2"))
786
+ self.pass3_radioButton.setText(_translate("MainWindow", "Pass 3"))
787
+ self.pass4_radioButton.setText(_translate("MainWindow", "Pass 4"))
788
+ self.label_5.setText(_translate("MainWindow", "Timecourse (seconds)"))
789
+ self.label_12.setText(_translate("MainWindow", "Power spectrum (Hz)"))
790
+ self.actionQuit.setText(_translate("MainWindow", "Quit"))
791
+
792
+
793
+ from pyqtgraph import GraphicsLayoutWidget, GraphicsView