rapidtide 2.9.5__py3-none-any.whl → 3.1.3__py3-none-any.whl

rapidtide/tests/utils.py

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-#   Copyright 2016-2024 Blaise Frederick
+#   Copyright 2016-2025 Blaise Frederick
 #
 #   Licensed under the Apache License, Version 2.0 (the "License");
 #   you may not use this file except in compliance with the License.
@@ -23,9 +23,10 @@ Utility functions for testing rapidtide.
 import os
 
 import numpy as np
+import numpy.typing as npt
 
 
-def get_rapidtide_root():
+def get_rapidtide_root() -> str:
     """
     Returns the path to the base rapidtide directory, terminated with separator.
     Based on function by Yaroslav Halchenko used in Neurosynth Python package.
@@ -34,7 +35,7 @@ def get_rapidtide_root():
     return os.path.join(thisdir, "..") + os.path.sep
 
 
-def get_scripts_path():
+def get_scripts_path() -> str:
     """
     Returns the path to test datasets, terminated with separator. Test-related
     data are kept in tests folder in "testdata".
@@ -43,7 +44,7 @@ def get_scripts_path():
     return os.path.realpath(os.path.join(get_rapidtide_root(), "scripts")) + os.path.sep
 
 
-def get_test_data_path():
+def get_test_data_path() -> str:
     """
     Returns the path to test datasets, terminated with separator. Test-related
     data are kept in tests folder in "testdata".
@@ -52,7 +53,7 @@ def get_test_data_path():
     return os.path.realpath(os.path.join(get_rapidtide_root(), "tests", "testdata")) + os.path.sep
 
 
-def get_test_target_path():
+def get_test_target_path() -> str:
     """
     Returns the path to test comparison data, terminated with separator. Test-related
     data are kept in tests folder in "testtargets".
@@ -63,7 +64,7 @@ def get_test_target_path():
     )
 
 
-def get_test_temp_path():
+def get_test_temp_path() -> str:
     """
     Returns the path to test temporary directory, terminated with separator.
     Based on function by Yaroslav Halchenko used in Neurosynth Python package.
@@ -71,7 +72,7 @@ def get_test_temp_path():
     return os.path.realpath(os.path.join(get_rapidtide_root(), "tests", "tmp")) + os.path.sep
 
 
-def get_examples_path():
+def get_examples_path() -> str:
     """
     Returns the path to examples src directory, where larger test files live, terminated with separator. Test-related
     data are kept in tests folder in "data".
@@ -83,7 +84,7 @@ def get_examples_path():
     )
 
 
-def create_dir(thedir, debug=False):
+def create_dir(thedir: str, debug: bool = False) -> None:
     # create a directory if it doesn't exist
     try:
         os.makedirs(thedir)
@@ -96,7 +97,7 @@ def create_dir(thedir, debug=False):
             pass
 
 
-def mse(ndarr1, ndarr2):
+def mse(ndarr1: npt.NDArray, ndarr2: npt.NDArray) -> np.floating:
     """
     Compute mean-squared error.
     """

rapidtide/tidepoolTemplate.py

@@ -1,27 +1,11 @@
-#!/usr/bin/env python
 # -*- coding: utf-8 -*-
-#
-#   Copyright 2016-2024 Blaise Frederick
-#
-#   Licensed under the Apache License, Version 2.0 (the "License");
-#   you may not use this file except in compliance with the License.
-#   You may obtain a copy of the License at
-#
-#       http://www.apache.org/licenses/LICENSE-2.0
-#
-#   Unless required by applicable law or agreed to in writing, software
-#   distributed under the License is distributed on an "AS IS" BASIS,
-#   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-#   See the License for the specific language governing permissions and
-#   limitations under the License.
-#
-#
 
 # Form implementation generated from reading ui file 'tidepoolTemplate.ui'
 #
-# Created by: PyQt5 UI code generator 5.12.3
+# Created by: PyQt5 UI code generator 5.15.10
 #
-# WARNING! All changes made in this file will be lost!
+# WARNING: Any manual changes made to this file will be lost when pyuic5 is
+# run again.  Do not edit this file unless you know what you are doing.
 
 
 from PyQt5 import QtCore, QtGui, QtWidgets
@@ -59,6 +43,7 @@ class Ui_MainWindow(object):
         self.logOutput.setGeometry(QtCore.QRect(10, 30, 651, 131))
         font = QtGui.QFont()
         font.setFamily("Courier")
+        font.setBold(True)
         self.logOutput.setFont(font)
         self.logOutput.setObjectName("logOutput")
         self.imageData_groupBox = QtWidgets.QGroupBox(self.centralwidget)
@@ -78,10 +63,12 @@ class Ui_MainWindow(object):
         self.label.setWordWrap(True)
         self.label.setObjectName("label")
         self.layoutWidget = QtWidgets.QWidget(self.imageData_groupBox)
-        self.layoutWidget.setGeometry(QtCore.QRect(10, 20, 1073, 286))
+        self.layoutWidget.setGeometry(QtCore.QRect(10, 20, 1074, 286))
         self.layoutWidget.setObjectName("layoutWidget")
         self.largeimage_horizontalLayout = QtWidgets.QHBoxLayout(self.layoutWidget)
-        self.largeimage_horizontalLayout.setSizeConstraint(QtWidgets.QLayout.SetNoConstraint)
+        self.largeimage_horizontalLayout.setSizeConstraint(
+            QtCore.Qt.QLayout.SizeConstraint.SetNoConstraint
+        )
         self.largeimage_horizontalLayout.setContentsMargins(0, 0, 0, 0)
         self.largeimage_horizontalLayout.setObjectName("largeimage_horizontalLayout")
         self.main_graphicsView_ax = GraphicsLayoutWidget(self.layoutWidget)
@@ -95,8 +82,8 @@ class Ui_MainWindow(object):
         self.main_graphicsView_ax.setMinimumSize(QtCore.QSize(256, 256))
         self.main_graphicsView_ax.setMaximumSize(QtCore.QSize(256, 256))
         self.main_graphicsView_ax.setSizeIncrement(QtCore.QSize(1, 1))
-        self.main_graphicsView_ax.setFrameShape(QtWidgets.QFrame.NoFrame)
-        self.main_graphicsView_ax.setAlignment(QtCore.Qt.AlignCenter)
+        self.main_graphicsView_ax.setFrameShape(QtCore.Qt.QFrame.Shape.NoFrame)
+        self.main_graphicsView_ax.setAlignment(QtCore.Qt.Qt.AlignmentFlag.AlignCenter)
         self.main_graphicsView_ax.setObjectName("main_graphicsView_ax")
         self.largeimage_horizontalLayout.addWidget(self.main_graphicsView_ax)
         self.main_graphicsView_cor = GraphicsLayoutWidget(self.layoutWidget)
@@ -110,8 +97,8 @@ class Ui_MainWindow(object):
         self.main_graphicsView_cor.setMinimumSize(QtCore.QSize(256, 256))
         self.main_graphicsView_cor.setMaximumSize(QtCore.QSize(256, 256))
         self.main_graphicsView_cor.setSizeIncrement(QtCore.QSize(1, 1))
-        self.main_graphicsView_cor.setFrameShape(QtWidgets.QFrame.NoFrame)
-        self.main_graphicsView_cor.setAlignment(QtCore.Qt.AlignCenter)
+        self.main_graphicsView_cor.setFrameShape(QtCore.Qt.QFrame.Shape.NoFrame)
+        self.main_graphicsView_cor.setAlignment(QtCore.Qt.Qt.AlignmentFlag.AlignCenter)
         self.main_graphicsView_cor.setObjectName("main_graphicsView_cor")
         self.largeimage_horizontalLayout.addWidget(self.main_graphicsView_cor)
         self.main_graphicsView_sag = GraphicsLayoutWidget(self.layoutWidget)
@@ -125,8 +112,8 @@ class Ui_MainWindow(object):
         self.main_graphicsView_sag.setMinimumSize(QtCore.QSize(256, 256))
         self.main_graphicsView_sag.setMaximumSize(QtCore.QSize(256, 256))
         self.main_graphicsView_sag.setSizeIncrement(QtCore.QSize(1, 1))
-        self.main_graphicsView_sag.setFrameShape(QtWidgets.QFrame.NoFrame)
-        self.main_graphicsView_sag.setAlignment(QtCore.Qt.AlignCenter)
+        self.main_graphicsView_sag.setFrameShape(QtCore.Qt.QFrame.Shape.NoFrame)
+        self.main_graphicsView_sag.setAlignment(QtCore.Qt.Qt.AlignmentFlag.AlignCenter)
         self.main_graphicsView_sag.setObjectName("main_graphicsView_sag")
         self.largeimage_horizontalLayout.addWidget(self.main_graphicsView_sag)
         self.graphicsView_colorbar = GraphicsView(self.layoutWidget)
@@ -143,13 +130,15 @@ class Ui_MainWindow(object):
         self.graphicsView_colorbar.setObjectName("graphicsView_colorbar")
         self.largeimage_horizontalLayout.addWidget(self.graphicsView_colorbar)
         self.verticalLayout_3 = QtWidgets.QVBoxLayout()
-        self.verticalLayout_3.setSizeConstraint(QtWidgets.QLayout.SetMaximumSize)
+        self.verticalLayout_3.setSizeConstraint(QtCore.Qt.QLayout.SizeConstraint.SetMaximumSize)
         self.verticalLayout_3.setContentsMargins(-1, 5, -1, 5)
         self.verticalLayout_3.setSpacing(0)
         self.verticalLayout_3.setObjectName("verticalLayout_3")
         self.dispmax_doubleSpinBox = QtWidgets.QDoubleSpinBox(self.layoutWidget)
         self.dispmax_doubleSpinBox.setAlignment(
-            QtCore.Qt.AlignRight | QtCore.Qt.AlignTrailing | QtCore.Qt.AlignVCenter
+            QtCore.Qt.Qt.AlignmentFlag.AlignRight
+            | QtCore.Qt.Qt.AlignmentFlag.AlignTrailing
+            | QtCore.Qt.Qt.AlignmentFlag.AlignVCenter
         )
         self.dispmax_doubleSpinBox.setDecimals(3)
         self.dispmax_doubleSpinBox.setObjectName("dispmax_doubleSpinBox")
@@ -174,9 +163,15 @@ class Ui_MainWindow(object):
             20, 40, QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Expanding
         )
         self.verticalLayout_3.addItem(spacerItem1)
+        self.transparency_checkBox = QtWidgets.QCheckBox(self.layoutWidget)
+        self.transparency_checkBox.setChecked(False)
+        self.transparency_checkBox.setObjectName("transparency_checkBox")
+        self.verticalLayout_3.addWidget(self.transparency_checkBox)
         self.dispmin_doubleSpinBox = QtWidgets.QDoubleSpinBox(self.layoutWidget)
         self.dispmin_doubleSpinBox.setAlignment(
-            QtCore.Qt.AlignRight | QtCore.Qt.AlignTrailing | QtCore.Qt.AlignVCenter
+            QtCore.Qt.Qt.AlignmentFlag.AlignRight
+            | QtCore.Qt.Qt.AlignmentFlag.AlignTrailing
+            | QtCore.Qt.Qt.AlignmentFlag.AlignVCenter
         )
         self.dispmin_doubleSpinBox.setDecimals(3)
         self.dispmin_doubleSpinBox.setObjectName("dispmin_doubleSpinBox")
@@ -207,13 +202,13 @@ class Ui_MainWindow(object):
         self.thermal_radioButton.setObjectName("thermal_radioButton")
         self.colormap_buttonGroup.addButton(self.thermal_radioButton)
         self.colormap_verticalLayout.addWidget(self.thermal_radioButton)
-        self.GYR_radioButton = QtWidgets.QRadioButton(self.layoutWidget)
+        self.plasma_radioButton = QtWidgets.QRadioButton(self.layoutWidget)
         font = QtGui.QFont()
         font.setPointSize(10)
-        self.GYR_radioButton.setFont(font)
-        self.GYR_radioButton.setObjectName("GYR_radioButton")
-        self.colormap_buttonGroup.addButton(self.GYR_radioButton)
-        self.colormap_verticalLayout.addWidget(self.GYR_radioButton)
+        self.plasma_radioButton.setFont(font)
+        self.plasma_radioButton.setObjectName("plasma_radioButton")
+        self.colormap_buttonGroup.addButton(self.plasma_radioButton)
+        self.colormap_verticalLayout.addWidget(self.plasma_radioButton)
         self.rainbow_radioButton = QtWidgets.QRadioButton(self.layoutWidget)
         font = QtGui.QFont()
         font.setPointSize(10)
@@ -267,13 +262,13 @@ class Ui_MainWindow(object):
         self.median_radioButton.setObjectName("median_radioButton")
         self.stats_buttonGroup.addButton(self.median_radioButton)
         self.aspects_verticalLayout.addWidget(self.median_radioButton)
-        self.robustmean_radioButton = QtWidgets.QRadioButton(self.layoutWidget)
+        self.CoV_radioButton = QtWidgets.QRadioButton(self.layoutWidget)
         font = QtGui.QFont()
         font.setPointSize(10)
-        self.robustmean_radioButton.setFont(font)
-        self.robustmean_radioButton.setObjectName("robustmean_radioButton")
-        self.stats_buttonGroup.addButton(self.robustmean_radioButton)
-        self.aspects_verticalLayout.addWidget(self.robustmean_radioButton)
+        self.CoV_radioButton.setFont(font)
+        self.CoV_radioButton.setObjectName("CoV_radioButton")
+        self.stats_buttonGroup.addButton(self.CoV_radioButton)
+        self.aspects_verticalLayout.addWidget(self.CoV_radioButton)
         self.std_radioButton = QtWidgets.QRadioButton(self.layoutWidget)
         font = QtGui.QFont()
         font.setPointSize(10)
@@ -320,8 +315,8 @@ class Ui_MainWindow(object):
         self.overlay_graphicsView_01.setSizePolicy(sizePolicy)
         self.overlay_graphicsView_01.setMinimumSize(QtCore.QSize(198, 64))
         self.overlay_graphicsView_01.setMaximumSize(QtCore.QSize(198, 64))
-        self.overlay_graphicsView_01.setFrameShape(QtWidgets.QFrame.NoFrame)
-        self.overlay_graphicsView_01.setAlignment(QtCore.Qt.AlignCenter)
+        self.overlay_graphicsView_01.setFrameShape(QtCore.Qt.QFrame.Shape.NoFrame)
+        self.overlay_graphicsView_01.setAlignment(QtCore.Qt.Qt.AlignmentFlag.AlignCenter)
         self.overlay_graphicsView_01.setObjectName("overlay_graphicsView_01")
         self.overlay_radioButton_01 = QtWidgets.QRadioButton(self.overlays_groupBox)
         self.overlay_radioButton_01.setGeometry(QtCore.QRect(10, 90, 151, 20))
@@ -380,8 +375,8 @@ class Ui_MainWindow(object):
         self.overlay_graphicsView_04.setSizePolicy(sizePolicy)
         self.overlay_graphicsView_04.setMinimumSize(QtCore.QSize(192, 64))
         self.overlay_graphicsView_04.setMaximumSize(QtCore.QSize(192, 64))
-        self.overlay_graphicsView_04.setFrameShape(QtWidgets.QFrame.NoFrame)
-        self.overlay_graphicsView_04.setAlignment(QtCore.Qt.AlignCenter)
+        self.overlay_graphicsView_04.setFrameShape(QtCore.Qt.QFrame.Shape.NoFrame)
+        self.overlay_graphicsView_04.setAlignment(QtCore.Qt.Qt.AlignmentFlag.AlignCenter)
         self.overlay_graphicsView_04.setObjectName("overlay_graphicsView_04")
         self.overlay_graphicsView_06 = GraphicsLayoutWidget(self.overlays_groupBox)
         self.overlay_graphicsView_06.setGeometry(QtCore.QRect(220, 200, 192, 64))
@@ -394,8 +389,8 @@ class Ui_MainWindow(object):
         self.overlay_graphicsView_06.setSizePolicy(sizePolicy)
         self.overlay_graphicsView_06.setMinimumSize(QtCore.QSize(192, 64))
         self.overlay_graphicsView_06.setMaximumSize(QtCore.QSize(192, 64))
-        self.overlay_graphicsView_06.setFrameShape(QtWidgets.QFrame.NoFrame)
-        self.overlay_graphicsView_06.setAlignment(QtCore.Qt.AlignCenter)
+        self.overlay_graphicsView_06.setFrameShape(QtCore.Qt.QFrame.Shape.NoFrame)
+        self.overlay_graphicsView_06.setAlignment(QtCore.Qt.Qt.AlignmentFlag.AlignCenter)
         self.overlay_graphicsView_06.setObjectName("overlay_graphicsView_06")
         self.overlay_graphicsView_03 = GraphicsLayoutWidget(self.overlays_groupBox)
         self.overlay_graphicsView_03.setGeometry(QtCore.QRect(220, 115, 192, 64))
@@ -408,8 +403,8 @@ class Ui_MainWindow(object):
         self.overlay_graphicsView_03.setSizePolicy(sizePolicy)
         self.overlay_graphicsView_03.setMinimumSize(QtCore.QSize(192, 64))
         self.overlay_graphicsView_03.setMaximumSize(QtCore.QSize(192, 64))
-        self.overlay_graphicsView_03.setFrameShape(QtWidgets.QFrame.NoFrame)
-        self.overlay_graphicsView_03.setAlignment(QtCore.Qt.AlignCenter)
+        self.overlay_graphicsView_03.setFrameShape(QtCore.Qt.QFrame.Shape.NoFrame)
+        self.overlay_graphicsView_03.setAlignment(QtCore.Qt.Qt.AlignmentFlag.AlignCenter)
         self.overlay_graphicsView_03.setObjectName("overlay_graphicsView_03")
         self.overlay_graphicsView_08 = GraphicsLayoutWidget(self.overlays_groupBox)
         self.overlay_graphicsView_08.setGeometry(QtCore.QRect(220, 285, 192, 64))
@@ -422,8 +417,8 @@ class Ui_MainWindow(object):
         self.overlay_graphicsView_08.setSizePolicy(sizePolicy)
         self.overlay_graphicsView_08.setMinimumSize(QtCore.QSize(192, 64))
         self.overlay_graphicsView_08.setMaximumSize(QtCore.QSize(192, 64))
-        self.overlay_graphicsView_08.setFrameShape(QtWidgets.QFrame.NoFrame)
-        self.overlay_graphicsView_08.setAlignment(QtCore.Qt.AlignCenter)
+        self.overlay_graphicsView_08.setFrameShape(QtCore.Qt.QFrame.Shape.NoFrame)
+        self.overlay_graphicsView_08.setAlignment(QtCore.Qt.Qt.AlignmentFlag.AlignCenter)
         self.overlay_graphicsView_08.setObjectName("overlay_graphicsView_08")
         self.overlay_graphicsView_05 = GraphicsLayoutWidget(self.overlays_groupBox)
         self.overlay_graphicsView_05.setGeometry(QtCore.QRect(10, 200, 192, 64))
@@ -436,8 +431,8 @@ class Ui_MainWindow(object):
         self.overlay_graphicsView_05.setSizePolicy(sizePolicy)
         self.overlay_graphicsView_05.setMinimumSize(QtCore.QSize(192, 64))
         self.overlay_graphicsView_05.setMaximumSize(QtCore.QSize(192, 64))
-        self.overlay_graphicsView_05.setFrameShape(QtWidgets.QFrame.NoFrame)
-        self.overlay_graphicsView_05.setAlignment(QtCore.Qt.AlignCenter)
+        self.overlay_graphicsView_05.setFrameShape(QtCore.Qt.QFrame.Shape.NoFrame)
+        self.overlay_graphicsView_05.setAlignment(QtCore.Qt.Qt.AlignmentFlag.AlignCenter)
         self.overlay_graphicsView_05.setObjectName("overlay_graphicsView_05")
         self.overlay_graphicsView_02 = GraphicsLayoutWidget(self.overlays_groupBox)
         self.overlay_graphicsView_02.setGeometry(QtCore.QRect(220, 30, 192, 64))
@@ -450,8 +445,8 @@ class Ui_MainWindow(object):
         self.overlay_graphicsView_02.setSizePolicy(sizePolicy)
         self.overlay_graphicsView_02.setMinimumSize(QtCore.QSize(192, 64))
         self.overlay_graphicsView_02.setMaximumSize(QtCore.QSize(192, 64))
-        self.overlay_graphicsView_02.setFrameShape(QtWidgets.QFrame.NoFrame)
-        self.overlay_graphicsView_02.setAlignment(QtCore.Qt.AlignCenter)
+        self.overlay_graphicsView_02.setFrameShape(QtCore.Qt.QFrame.Shape.NoFrame)
+        self.overlay_graphicsView_02.setAlignment(QtCore.Qt.Qt.AlignmentFlag.AlignCenter)
         self.overlay_graphicsView_02.setObjectName("overlay_graphicsView_02")
         self.overlay_graphicsView_07 = GraphicsLayoutWidget(self.overlays_groupBox)
         self.overlay_graphicsView_07.setGeometry(QtCore.QRect(10, 285, 192, 64))
@@ -464,8 +459,8 @@ class Ui_MainWindow(object):
         self.overlay_graphicsView_07.setSizePolicy(sizePolicy)
         self.overlay_graphicsView_07.setMinimumSize(QtCore.QSize(192, 64))
         self.overlay_graphicsView_07.setMaximumSize(QtCore.QSize(192, 64))
-        self.overlay_graphicsView_07.setFrameShape(QtWidgets.QFrame.NoFrame)
-        self.overlay_graphicsView_07.setAlignment(QtCore.Qt.AlignCenter)
+        self.overlay_graphicsView_07.setFrameShape(QtCore.Qt.QFrame.Shape.NoFrame)
+        self.overlay_graphicsView_07.setAlignment(QtCore.Qt.Qt.AlignmentFlag.AlignCenter)
         self.overlay_graphicsView_07.setObjectName("overlay_graphicsView_07")
         self.overlay_graphicsView_01.raise_()
         self.overlay_radioButton_01.raise_()
@@ -517,7 +512,9 @@ class Ui_MainWindow(object):
         self.pixnumX_doubleSpinBox = QtWidgets.QDoubleSpinBox(self.mainimagedata_groupBox)
         self.pixnumX_doubleSpinBox.setGeometry(QtCore.QRect(30, 30, 67, 24))
         self.pixnumX_doubleSpinBox.setAlignment(
-            QtCore.Qt.AlignRight | QtCore.Qt.AlignTrailing | QtCore.Qt.AlignVCenter
+            QtCore.Qt.Qt.AlignmentFlag.AlignRight
+            | QtCore.Qt.Qt.AlignmentFlag.AlignTrailing
+            | QtCore.Qt.Qt.AlignmentFlag.AlignVCenter
         )
         self.pixnumX_doubleSpinBox.setDecimals(0)
         self.pixnumX_doubleSpinBox.setObjectName("pixnumX_doubleSpinBox")
@@ -530,7 +527,9 @@ class Ui_MainWindow(object):
         self.coordX_doubleSpinBox = QtWidgets.QDoubleSpinBox(self.mainimagedata_groupBox)
         self.coordX_doubleSpinBox.setGeometry(QtCore.QRect(100, 30, 67, 24))
         self.coordX_doubleSpinBox.setAlignment(
-            QtCore.Qt.AlignRight | QtCore.Qt.AlignTrailing | QtCore.Qt.AlignVCenter
+            QtCore.Qt.Qt.AlignmentFlag.AlignRight
+            | QtCore.Qt.Qt.AlignmentFlag.AlignTrailing
+            | QtCore.Qt.Qt.AlignmentFlag.AlignVCenter
         )
         self.coordX_doubleSpinBox.setDecimals(3)
         self.coordX_doubleSpinBox.setObjectName("coordX_doubleSpinBox")
@@ -543,28 +542,36 @@ class Ui_MainWindow(object):
         self.pixnumY_doubleSpinBox = QtWidgets.QDoubleSpinBox(self.mainimagedata_groupBox)
         self.pixnumY_doubleSpinBox.setGeometry(QtCore.QRect(30, 55, 67, 24))
         self.pixnumY_doubleSpinBox.setAlignment(
-            QtCore.Qt.AlignRight | QtCore.Qt.AlignTrailing | QtCore.Qt.AlignVCenter
+            QtCore.Qt.Qt.AlignmentFlag.AlignRight
+            | QtCore.Qt.Qt.AlignmentFlag.AlignTrailing
+            | QtCore.Qt.Qt.AlignmentFlag.AlignVCenter
         )
         self.pixnumY_doubleSpinBox.setDecimals(0)
         self.pixnumY_doubleSpinBox.setObjectName("pixnumY_doubleSpinBox")
         self.coordY_doubleSpinBox = QtWidgets.QDoubleSpinBox(self.mainimagedata_groupBox)
         self.coordY_doubleSpinBox.setGeometry(QtCore.QRect(100, 55, 67, 24))
         self.coordY_doubleSpinBox.setAlignment(
-            QtCore.Qt.AlignRight | QtCore.Qt.AlignTrailing | QtCore.Qt.AlignVCenter
+            QtCore.Qt.Qt.AlignmentFlag.AlignRight
+            | QtCore.Qt.Qt.AlignmentFlag.AlignTrailing
+            | QtCore.Qt.Qt.AlignmentFlag.AlignVCenter
         )
         self.coordY_doubleSpinBox.setDecimals(3)
         self.coordY_doubleSpinBox.setObjectName("coordY_doubleSpinBox")
         self.pixnumZ_doubleSpinBox = QtWidgets.QDoubleSpinBox(self.mainimagedata_groupBox)
         self.pixnumZ_doubleSpinBox.setGeometry(QtCore.QRect(30, 80, 67, 24))
         self.pixnumZ_doubleSpinBox.setAlignment(
-            QtCore.Qt.AlignRight | QtCore.Qt.AlignTrailing | QtCore.Qt.AlignVCenter
+            QtCore.Qt.Qt.AlignmentFlag.AlignRight
+            | QtCore.Qt.Qt.AlignmentFlag.AlignTrailing
+            | QtCore.Qt.Qt.AlignmentFlag.AlignVCenter
         )
         self.pixnumZ_doubleSpinBox.setDecimals(0)
         self.pixnumZ_doubleSpinBox.setObjectName("pixnumZ_doubleSpinBox")
         self.coordZ_doubleSpinBox = QtWidgets.QDoubleSpinBox(self.mainimagedata_groupBox)
         self.coordZ_doubleSpinBox.setGeometry(QtCore.QRect(100, 80, 67, 24))
         self.coordZ_doubleSpinBox.setAlignment(
-            QtCore.Qt.AlignRight | QtCore.Qt.AlignTrailing | QtCore.Qt.AlignVCenter
+            QtCore.Qt.Qt.AlignmentFlag.AlignRight
+            | QtCore.Qt.Qt.AlignmentFlag.AlignTrailing
+            | QtCore.Qt.Qt.AlignmentFlag.AlignVCenter
         )
         self.coordZ_doubleSpinBox.setDecimals(3)
         self.coordZ_doubleSpinBox.setObjectName("coordZ_doubleSpinBox")
@@ -577,14 +584,18 @@ class Ui_MainWindow(object):
         self.coordT_doubleSpinBox = QtWidgets.QDoubleSpinBox(self.mainimagedata_groupBox)
         self.coordT_doubleSpinBox.setGeometry(QtCore.QRect(100, 130, 67, 24))
         self.coordT_doubleSpinBox.setAlignment(
-            QtCore.Qt.AlignRight | QtCore.Qt.AlignTrailing | QtCore.Qt.AlignVCenter
+            QtCore.Qt.Qt.AlignmentFlag.AlignRight
+            | QtCore.Qt.Qt.AlignmentFlag.AlignTrailing
+            | QtCore.Qt.Qt.AlignmentFlag.AlignVCenter
         )
         self.coordT_doubleSpinBox.setDecimals(3)
         self.coordT_doubleSpinBox.setObjectName("coordT_doubleSpinBox")
         self.pixnumT_doubleSpinBox = QtWidgets.QDoubleSpinBox(self.mainimagedata_groupBox)
         self.pixnumT_doubleSpinBox.setGeometry(QtCore.QRect(30, 130, 67, 24))
         self.pixnumT_doubleSpinBox.setAlignment(
-            QtCore.Qt.AlignRight | QtCore.Qt.AlignTrailing | QtCore.Qt.AlignVCenter
+            QtCore.Qt.Qt.AlignmentFlag.AlignRight
+            | QtCore.Qt.Qt.AlignmentFlag.AlignTrailing
+            | QtCore.Qt.Qt.AlignmentFlag.AlignVCenter
         )
         self.pixnumT_doubleSpinBox.setDecimals(0)
         self.pixnumT_doubleSpinBox.setObjectName("pixnumT_doubleSpinBox")
@@ -593,7 +604,7 @@ class Ui_MainWindow(object):
         self.label_3.setObjectName("label_3")
         self.TimeSlider = QtWidgets.QSlider(self.mainimagedata_groupBox)
         self.TimeSlider.setGeometry(QtCore.QRect(10, 165, 261, 22))
-        self.TimeSlider.setOrientation(QtCore.Qt.Horizontal)
+        self.TimeSlider.setOrientation(QtCore.Qt.Qt.Orientation.Horizontal)
         self.TimeSlider.setObjectName("TimeSlider")
         self.label_10 = QtWidgets.QLabel(self.mainimagedata_groupBox)
         self.label_10.setGeometry(QtCore.QRect(30, 120, 56, 13))
@@ -684,15 +695,15 @@ class Ui_MainWindow(object):
         self.verticalLayout.addWidget(self.pass4_radioButton)
         self.label_5 = QtWidgets.QLabel(self.regressor_groupBox)
         self.label_5.setGeometry(QtCore.QRect(160, 155, 161, 16))
-        self.label_5.setAlignment(QtCore.Qt.AlignCenter)
+        self.label_5.setAlignment(QtCore.Qt.Qt.AlignmentFlag.AlignCenter)
         self.label_5.setObjectName("label_5")
         self.label_12 = QtWidgets.QLabel(self.regressor_groupBox)
         self.label_12.setGeometry(QtCore.QRect(660, 155, 131, 16))
-        self.label_12.setAlignment(QtCore.Qt.AlignCenter)
+        self.label_12.setAlignment(QtCore.Qt.Qt.AlignmentFlag.AlignCenter)
         self.label_12.setObjectName("label_12")
         MainWindow.setCentralWidget(self.centralwidget)
         self.menubar = QtWidgets.QMenuBar(MainWindow)
-        self.menubar.setGeometry(QtCore.QRect(0, 0, 1129, 22))
+        self.menubar.setGeometry(QtCore.QRect(0, 0, 1129, 24))
         self.menubar.setObjectName("menubar")
         MainWindow.setMenuBar(self.menubar)
         self.statusbar = QtWidgets.QStatusBar(MainWindow)
@@ -719,10 +730,17 @@ class Ui_MainWindow(object):
         self.resetDispSmart_Button.setText(_translate("MainWindow", "Smart"))
         self.saveDisp_Button.setText(_translate("MainWindow", "Save"))
         self.setMask_Button.setText(_translate("MainWindow", "No mask"))
+        self.transparency_checkBox.setToolTip(
+            _translate(
+                "MainWindow",
+                "With transparency on, map values outside the range limits are not displayed.",
+            )
+        )
+        self.transparency_checkBox.setText(_translate("MainWindow", "Transparency"))
         self.label_2.setText(_translate("MainWindow", "Colormap"))
         self.gray_radioButton.setText(_translate("MainWindow", "Gray"))
         self.thermal_radioButton.setText(_translate("MainWindow", "Thermal"))
-        self.GYR_radioButton.setText(_translate("MainWindow", "GYR"))
+        self.plasma_radioButton.setText(_translate("MainWindow", "Plasma"))
         self.rainbow_radioButton.setText(_translate("MainWindow", "Rainbow"))
         self.viridis_radioButton.setText(_translate("MainWindow", "Viridis"))
         self.turbo_radioButton.setText(_translate("MainWindow", "Turbo"))
@@ -730,7 +748,7 @@ class Ui_MainWindow(object):
         self.raw_radioButton.setText(_translate("MainWindow", "Raw data"))
         self.mean_radioButton.setText(_translate("MainWindow", "Mean"))
         self.median_radioButton.setText(_translate("MainWindow", "Median"))
-        self.robustmean_radioButton.setText(_translate("MainWindow", "Robust mean"))
+        self.CoV_radioButton.setText(_translate("MainWindow", "CoV"))
         self.std_radioButton.setText(_translate("MainWindow", "Std dev"))
         self.MAD_radioButton.setText(_translate("MainWindow", "MAD"))
         self.overlays_groupBox.setTitle(_translate("MainWindow", "Overlays"))