pymodaq 5.1.6__py3-none-any.whl

pymodaq/resources/config_template.toml

@@ -0,0 +1,57 @@
+
+[presets]
+default_preset_for_scan = "preset_default"
+default_preset_for_logger = "preset_default"
+default_preset_for_pid = "beam_steering_mock"
+default_preset_for_datamixer = "preset_default"
+
+[actuator]
+ui = 'Simple'  # one of ['Simple', 'Original', 'Binary', ...]
+epsilon_default = 1
+polling_interval_ms = 100  # ms Careful when using TCP/IP connection as you can saturate the connection with too much polling
+polling_timeout_s = 20  # s
+refresh_timeout_ms = 500  # ms
+timeout = 10000  # default duration in ms to wait for data to be acquirred
+siprefix = true  # tell if printing of current value use a SI prefix or not (µ, m, k, M...)
+siprefix_even_without_units = false
+display_units = true # display units in the SpinBoxes
+
+[actuator.allowed_units]
+V = 'V'
+volt = 'volt'
+W = 'W'
+Hz = 'Hz'
+rpm = 'rpm'
+revolutions_per_minute = 'revolutions_per_minute'
+
+[actuator.binary]
+value_1 = 0
+value_2 = 1
+
+[viewer]
+daq_type = 'DAQ0D' #either "DAQ0D", "DAQ1D", "DAQ2D", "DAQND"
+viewer_in_thread = true
+timeout = 10000  # default duration in ms to wait for data to be acquirred
+allow_settings_edition = false
+settings_as_popup = true
+
+[scan]
+scan_in_thread = true
+show_popups = true
+default = "Scan2D"
+Naverage = 1  # minimum is 1
+average_on_top = false
+steps_limit = 1000  # the limit of the number of steps you can set in a given scan
+sort1D = true
+
+[scan.timeflow]
+wait_time = 0
+wait_time_between = 0
+timeout = 10000  # in millisecond
+
+[optimizer]
+    n_iter = 100
+
+    [optimizer.bounds]
+    actuator_min = -10
+    actuator_max = 10

pymodaq/resources/preset_default.xml

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+<Preset type="group" title="Preset" visible="1" removable="0" readonly="0"><filename type="str" title="Filename:" visible="1" removable="0" readonly="0">preset_default</filename><model_settings type="group" title="Model Settings:" visible="0" removable="0" readonly="0" /><Moves type="groupmove" title="Moves:" visible="1" removable="0" readonly="0" addText="Add"><move00 type="group" title="Actuator 00" visible="1" removable="1" readonly="0"><name type="str" title="Name:" visible="1" removable="0" readonly="0">xaxis</name><init type="bool" title="Init?:" visible="1" removable="0" readonly="0">1</init><params type="group" title="Settings:" visible="1" removable="0" readonly="0"><main_settings type="group" title="Main Settings:" visible="1" removable="0" readonly="0"><move_type type="str" title="Actuator type:" visible="1" removable="0" readonly="1">Mock</move_type><module_name type="str" title="Actuator name:" visible="1" removable="0" readonly="1">xaxis</module_name><ui_type type="list" title="UI type:" visible="1" removable="0" readonly="0" limits="['Simple', 'Binary', 'Original', 'Relative']" show_pb="1">str('Original')</ui_type><plugin_config type="bool_push" title="Plugin Config:" visible="1" removable="0" readonly="0" label="Show Config">0</plugin_config><refresh_timeout type="int" title="Refresh value (ms):" visible="1" removable="0" readonly="0">500</refresh_timeout><tcpip type="group" title="TCP/IP options:" visible="1" removable="0" readonly="0"><connect_server type="bool_push" title="Connect to server:" visible="1" removable="0" readonly="0" label="Connect">0</connect_server><tcp_connected type="led" title="Connected?:" visible="1" removable="0" readonly="0">0</tcp_connected><ip_address type="str" title="IP address:" visible="1" removable="0" readonly="0">10.47.0.39</ip_address><port type="int" title="Port:" visible="1" removable="0" readonly="0">6341</port></tcpip><leco type="group" title="LECO options:" visible="1" removable="0" readonly="0"><connect_leco_server type="bool_push" title="Connect:" visible="1" removable="0" readonly="0" label="Connect">0</connect_leco_server><leco_connected type="led" title="Connected?:" visible="1" removable="0" readonly="0">0</leco_connected><leco_name type="str" title="Name" visible="1" removable="0" readonly="0" /><host type="str" title="Host:" visible="1" removable="0" readonly="0">localhost</host><port type="int" title="Port:" visible="1" removable="0" readonly="0">12300</port></leco></main_settings><move_settings type="group" title="Actuator Settings:" visible="1" removable="0" readonly="0"><tau type="int" title="Tau (ms):" visible="1" removable="0" readonly="0">500.0</tau><multiaxes type="group" title="MultiAxes:" visible="1" removable="0" readonly="0"><controller_ID type="int" title="Controller ID:" visible="1" removable="0" readonly="0">9025</controller_ID><multi_status type="list" title="Status:" visible="1" removable="0" readonly="0" limits="['Master', 'Slave']" show_pb="1">str('Master')</multi_status><axis type="list" title="Axis:" visible="1" removable="0" readonly="0" limits="['X', 'Y', 'Theta', 'Power', 'Temp', 'Frequency', 'Speed']" show_pb="1">str('X')</axis></multiaxes><units type="str" title="Units:" visible="1" removable="0" readonly="1" /><epsilon type="float" title="Epsilon:" visible="1" removable="0" readonly="0">1</epsilon><timeout type="int" title="Timeout (s):" visible="1" removable="0" readonly="0">20</timeout><bounds type="group" title="Bounds:" visible="1" removable="0" readonly="0"><is_bounds type="bool" title="Set Bounds:" visible="1" removable="0" readonly="0">0</is_bounds><min_bound type="float" title="Min:" visible="1" removable="0" readonly="0">0</min_bound><max_bound type="float" title="Max:" visible="1" removable="0" readonly="0">1</max_bound></bounds><scaling type="group" title="Scaling:" visible="1" removable="0" readonly="0"><use_scaling type="bool" title="Use scaling:" visible="1" removable="0" readonly="0">0</use_scaling><scaling type="float" title="Scaling factor:" visible="1" removable="0" readonly="0">1.0</scaling><offset type="float" title="Offset factor:" visible="1" removable="0" readonly="0">0.0</offset></scaling></move_settings></params></move00><move01 type="group" title="Actuator 01" visible="1" removable="1" readonly="0"><name type="str" title="Name:" visible="1" removable="0" readonly="0">Yaxis</name><init type="bool" title="Init?:" visible="1" removable="0" readonly="0">1</init><params type="group" title="Settings:" visible="1" removable="0" readonly="0"><main_settings type="group" title="Main Settings:" visible="1" removable="0" readonly="0"><move_type type="str" title="Actuator type:" visible="1" removable="0" readonly="1">Mock</move_type><module_name type="str" title="Actuator name:" visible="1" removable="0" readonly="1">Yaxis</module_name><ui_type type="list" title="UI type:" visible="1" removable="0" readonly="0" limits="['Simple', 'Binary', 'Original', 'Relative']" show_pb="1">str('Original')</ui_type><plugin_config type="bool_push" title="Plugin Config:" visible="1" removable="0" readonly="0" label="Show Config">0</plugin_config><refresh_timeout type="int" title="Refresh value (ms):" visible="1" removable="0" readonly="0">500</refresh_timeout><tcpip type="group" title="TCP/IP options:" visible="1" removable="0" readonly="0"><connect_server type="bool_push" title="Connect to server:" visible="1" removable="0" readonly="0" label="Connect">0</connect_server><tcp_connected type="led" title="Connected?:" visible="1" removable="0" readonly="0">0</tcp_connected><ip_address type="str" title="IP address:" visible="1" removable="0" readonly="0">10.47.0.39</ip_address><port type="int" title="Port:" visible="1" removable="0" readonly="0">6341</port></tcpip><leco type="group" title="LECO options:" visible="1" removable="0" readonly="0"><connect_leco_server type="bool_push" title="Connect:" visible="1" removable="0" readonly="0" label="Connect">0</connect_leco_server><leco_connected type="led" title="Connected?:" visible="1" removable="0" readonly="0">0</leco_connected><leco_name type="str" title="Name" visible="1" removable="0" readonly="0" /><host type="str" title="Host:" visible="1" removable="0" readonly="0">localhost</host><port type="int" title="Port:" visible="1" removable="0" readonly="0">12300</port></leco></main_settings><move_settings type="group" title="Actuator Settings:" visible="1" removable="0" readonly="0"><tau type="int" title="Tau (ms):" visible="1" removable="0" readonly="0">500.0</tau><multiaxes type="group" title="MultiAxes:" visible="1" removable="0" readonly="0"><controller_ID type="int" title="Controller ID:" visible="1" removable="0" readonly="0">1495</controller_ID><multi_status type="list" title="Status:" visible="1" removable="0" readonly="0" limits="['Master', 'Slave']" show_pb="1">str('Master')</multi_status><axis type="list" title="Axis:" visible="1" removable="0" readonly="0" limits="['X', 'Y', 'Theta', 'Power', 'Temp', 'Frequency', 'Speed']" show_pb="1">str('X')</axis></multiaxes><units type="str" title="Units:" visible="1" removable="0" readonly="1" /><epsilon type="float" title="Epsilon:" visible="1" removable="0" readonly="0">1</epsilon><timeout type="int" title="Timeout (s):" visible="1" removable="0" readonly="0">20</timeout><bounds type="group" title="Bounds:" visible="1" removable="0" readonly="0"><is_bounds type="bool" title="Set Bounds:" visible="1" removable="0" readonly="0">0</is_bounds><min_bound type="float" title="Min:" visible="1" removable="0" readonly="0">0</min_bound><max_bound type="float" title="Max:" visible="1" removable="0" readonly="0">1</max_bound></bounds><scaling type="group" title="Scaling:" visible="1" removable="0" readonly="0"><use_scaling type="bool" title="Use scaling:" visible="1" removable="0" readonly="0">0</use_scaling><scaling type="float" title="Scaling factor:" visible="1" removable="0" readonly="0">1.0</scaling><offset type="float" title="Offset factor:" visible="1" removable="0" readonly="0">0.0</offset></scaling></move_settings></params></move01></Moves><Detectors type="groupdet" title="Detectors:" visible="1" removable="0" readonly="0" addText="Add"><det00 type="group" title="Det 00" visible="1" removable="1" readonly="0"><name type="str" title="Name:" visible="1" removable="0" readonly="0">Det 0D</name><init type="bool" title="Init?:" visible="1" removable="0" readonly="0">1</init><params type="group" title="Settings:" visible="1" removable="0" readonly="0"><main_settings type="group" title="Main Settings:" visible="1" removable="0" readonly="0"><DAQ_type type="list" title="DAQ type:" visible="1" removable="0" readonly="1" limits="['DAQ0D', 'DAQ1D', 'DAQ2D', 'DAQND']" show_pb="1">str('DAQ0D')</DAQ_type><detector_type type="str" title="Detector type:" visible="1" removable="0" readonly="1">Mock</detector_type><module_name type="str" title="Detector Name:" visible="1" removable="0" readonly="1">Det 0D</module_name><plugin_config type="bool_push" title="Plugin Config:" visible="1" removable="0" readonly="0" label="Show Config">0</plugin_config><show_data type="bool" title="Show data and process:" visible="1" removable="0" readonly="0">1</show_data><refresh_time type="float" title="Refresh time (ms):" visible="1" removable="0" readonly="0">50.0</refresh_time><Naverage type="int" title="Naverage" visible="1" removable="0" readonly="0">1</Naverage><show_averaging type="bool" title="Show averaging:" visible="1" removable="0" readonly="0">0</show_averaging><live_averaging type="bool" title="Live averaging:" visible="1" removable="0" readonly="0">0</live_averaging><N_live_averaging type="int" title="N Live aver.:" visible="0" removable="0" readonly="0">0</N_live_averaging><wait_time type="int" title="Wait time (ms):" visible="1" removable="0" readonly="0">0</wait_time><continuous_saving_opt type="bool" title="Continuous saving:" visible="1" removable="0" readonly="0">0</continuous_saving_opt><tcpip type="group" title="TCP/IP options:" visible="1" removable="0" readonly="0"><connect_server type="bool_push" title="Connect to server:" visible="1" removable="0" readonly="0" label="Connect">0</connect_server><tcp_connected type="led" title="Connected?:" visible="1" removable="0" readonly="0">0</tcp_connected><ip_address type="str" title="IP address:" visible="1" removable="0" readonly="0">10.47.0.39</ip_address><port type="int" title="Port:" visible="1" removable="0" readonly="0">6341</port></tcpip><leco type="group" title="LECO options:" visible="1" removable="0" readonly="0"><connect_leco_server type="bool_push" title="Connect:" visible="1" removable="0" readonly="0" label="Connect">0</connect_leco_server><leco_connected type="led" title="Connected?:" visible="1" removable="0" readonly="0">0</leco_connected><leco_name type="str" title="Name" visible="1" removable="0" readonly="0" /><host type="str" title="Host:" visible="1" removable="0" readonly="0">localhost</host><port type="int" title="Port:" visible="1" removable="0" readonly="0">12300</port></leco><overshoot type="group" title="Overshoot options:" visible="1" removable="0" readonly="0"><stop_overshoot type="bool" title="Overshoot:" visible="1" removable="0" readonly="0">0</stop_overshoot><overshoot_value type="float" title="Overshoot value:" visible="1" removable="0" readonly="0">0</overshoot_value></overshoot><axes type="group" title="Axis options:" visible="1" removable="0" readonly="0"><use_calib type="list" title="Use calibration?:" visible="1" removable="0" readonly="0" limits="['None']" show_pb="1">str('None')</use_calib><xaxis type="group" title="X axis:" visible="1" removable="0" readonly="0"><xlabel type="str" title="Label:" visible="1" removable="0" readonly="0">x axis</xlabel><xunits type="str" title="Units:" visible="1" removable="0" readonly="0">pxls</xunits><xoffset type="float" title="Offset:" visible="1" removable="0" readonly="0">0.0</xoffset><xscaling type="float" title="Scaling" visible="1" removable="0" readonly="0">1.0</xscaling></xaxis><yaxis type="group" title="Y axis:" visible="1" removable="0" readonly="0"><ylabel type="str" title="Label:" visible="1" removable="0" readonly="0">y axis</ylabel><yunits type="str" title="Units:" visible="1" removable="0" readonly="0">pxls</yunits><yoffset type="float" title="Offset:" visible="1" removable="0" readonly="0">0.0</yoffset><yscaling type="float" title="Scaling" visible="1" removable="0" readonly="0">1.0</yscaling></yaxis></axes></main_settings><detector_settings type="group" title="Detector Settings" visible="1" removable="0" readonly="0"><controller_status type="list" title="Controller Status:" visible="1" removable="0" readonly="0" limits="['Master', 'Slave']" show_pb="1">str('Master')</controller_status><controller_ID type="int" title="Controller ID:" visible="1" removable="0" readonly="0">5553</controller_ID><wait_time type="int" title="Wait time (ms)" visible="1" removable="0" readonly="0">100</wait_time><sep_viewers type="bool" title="Separated viewers" visible="1" removable="0" readonly="0">0</sep_viewers><lcd type="bool" title="Show in LCD" visible="1" removable="0" readonly="0">0</lcd><Mock1 type="group" title="Mock1" visible="1" removable="0" readonly="0"><Npts type="int" title="Npts" visible="1" removable="0" readonly="0">200</Npts><Amp type="int" title="Amp" visible="1" removable="0" readonly="0">20</Amp><x0 type="float" title="x0" visible="1" removable="0" readonly="0">50</x0><dx type="float" title="dx" visible="1" removable="0" readonly="0">20</dx><n type="int" title="n" visible="1" removable="0" readonly="0">1</n><amp_noise type="float" title="amp_noise" visible="1" removable="0" readonly="0">0.1</amp_noise></Mock1><Mock2 type="group" title="Mock2" visible="1" removable="0" readonly="0"><Npts type="int" title="Npts" visible="1" removable="0" readonly="0">200</Npts><Amp type="int" title="Amp" visible="1" removable="0" readonly="0">10</Amp><x0 type="float" title="x0" visible="1" removable="0" readonly="0">100</x0><dx type="float" title="dx" visible="1" removable="0" readonly="0">30</dx><n type="int" title="n" visible="1" removable="0" readonly="0">2</n><amp_noise type="float" title="amp_noise" visible="1" removable="0" readonly="0">0.1</amp_noise></Mock2></detector_settings></params></det00><det01 type="group" title="Det 01" visible="1" removable="1" readonly="0"><name type="str" title="Name:" visible="1" removable="0" readonly="0">Det 1D</name><init type="bool" title="Init?:" visible="1" removable="0" readonly="0">1</init><params type="group" title="Settings:" visible="1" removable="0" readonly="0"><main_settings type="group" title="Main Settings:" visible="1" removable="0" readonly="0"><DAQ_type type="list" title="DAQ type:" visible="1" removable="0" readonly="1" limits="['DAQ0D', 'DAQ1D', 'DAQ2D', 'DAQND']" show_pb="1">str('DAQ1D')</DAQ_type><detector_type type="str" title="Detector type:" visible="1" removable="0" readonly="1">Mock</detector_type><module_name type="str" title="Detector Name:" visible="1" removable="0" readonly="1">Det 1D</module_name><plugin_config type="bool_push" title="Plugin Config:" visible="1" removable="0" readonly="0" label="Show Config">0</plugin_config><show_data type="bool" title="Show data and process:" visible="1" removable="0" readonly="0">1</show_data><refresh_time type="float" title="Refresh time (ms):" visible="1" removable="0" readonly="0">50.0</refresh_time><Naverage type="int" title="Naverage" visible="1" removable="0" readonly="0">1</Naverage><show_averaging type="bool" title="Show averaging:" visible="1" removable="0" readonly="0">0</show_averaging><live_averaging type="bool" title="Live averaging:" visible="1" removable="0" readonly="0">0</live_averaging><N_live_averaging type="int" title="N Live aver.:" visible="0" removable="0" readonly="0">0</N_live_averaging><wait_time type="int" title="Wait time (ms):" visible="1" removable="0" readonly="0">0</wait_time><continuous_saving_opt type="bool" title="Continuous saving:" visible="1" removable="0" readonly="0">0</continuous_saving_opt><tcpip type="group" title="TCP/IP options:" visible="1" removable="0" readonly="0"><connect_server type="bool_push" title="Connect to server:" visible="1" removable="0" readonly="0" label="Connect">0</connect_server><tcp_connected type="led" title="Connected?:" visible="1" removable="0" readonly="0">0</tcp_connected><ip_address type="str" title="IP address:" visible="1" removable="0" readonly="0">10.47.0.39</ip_address><port type="int" title="Port:" visible="1" removable="0" readonly="0">6341</port></tcpip><leco type="group" title="LECO options:" visible="1" removable="0" readonly="0"><connect_leco_server type="bool_push" title="Connect:" visible="1" removable="0" readonly="0" label="Connect">0</connect_leco_server><leco_connected type="led" title="Connected?:" visible="1" removable="0" readonly="0">0</leco_connected><leco_name type="str" title="Name" visible="1" removable="0" readonly="0" /><host type="str" title="Host:" visible="1" removable="0" readonly="0">localhost</host><port type="int" title="Port:" visible="1" removable="0" readonly="0">12300</port></leco><overshoot type="group" title="Overshoot options:" visible="1" removable="0" readonly="0"><stop_overshoot type="bool" title="Overshoot:" visible="1" removable="0" readonly="0">0</stop_overshoot><overshoot_value type="float" title="Overshoot value:" visible="1" removable="0" readonly="0">0</overshoot_value></overshoot><axes type="group" title="Axis options:" visible="1" removable="0" readonly="0"><use_calib type="list" title="Use calibration?:" visible="1" removable="0" readonly="0" limits="['None']" show_pb="1">str('None')</use_calib><xaxis type="group" title="X axis:" visible="1" removable="0" readonly="0"><xlabel type="str" title="Label:" visible="1" removable="0" readonly="0">x axis</xlabel><xunits type="str" title="Units:" visible="1" removable="0" readonly="0">pxls</xunits><xoffset type="float" title="Offset:" visible="1" removable="0" readonly="0">0.0</xoffset><xscaling type="float" title="Scaling" visible="1" removable="0" readonly="0">1.0</xscaling></xaxis><yaxis type="group" title="Y axis:" visible="1" removable="0" readonly="0"><ylabel type="str" title="Label:" visible="1" removable="0" readonly="0">y axis</ylabel><yunits type="str" title="Units:" visible="1" removable="0" readonly="0">pxls</yunits><yoffset type="float" title="Offset:" visible="1" removable="0" readonly="0">0.0</yoffset><yscaling type="float" title="Scaling" visible="1" removable="0" readonly="0">1.0</yscaling></yaxis></axes></main_settings><detector_settings type="group" title="Detector Settings" visible="1" removable="0" readonly="0"><controller_status type="list" title="Controller Status:" visible="1" removable="0" readonly="0" limits="['Master', 'Slave']" show_pb="1">str('Master')</controller_status><controller_ID type="int" title="Controller ID:" visible="1" removable="0" readonly="0">2407</controller_ID><rolling type="int" title="Rolling?:" visible="1" removable="0" readonly="0">0</rolling><multi type="bool" title="Multi Channels?:" visible="1" removable="0" readonly="0">0</multi><Mock1 type="group" title="Mock1:" visible="1" removable="0" readonly="0"><Amp type="int" title="Amp:" visible="1" removable="0" readonly="0">20</Amp><x0 type="float" title="x0:" visible="1" removable="0" readonly="0">500</x0><dx type="float" title="dx:" visible="1" removable="0" readonly="0">0.3</dx><n type="int" title="n:" visible="1" removable="0" readonly="0">1</n><amp_noise type="float" title="noise:" visible="1" removable="0" readonly="0">0.1</amp_noise></Mock1><Mock2 type="group" title="Mock2:" visible="1" removable="0" readonly="0"><Amp type="int" title="Amp?:" visible="1" removable="0" readonly="0">10</Amp><x0 type="float" title="x0:" visible="1" removable="0" readonly="0">520</x0><dx type="float" title="dx:" visible="1" removable="0" readonly="0">0.7</dx><n type="int" title="n:" visible="1" removable="0" readonly="0">2</n><amp_noise type="float" title="noise:" visible="1" removable="0" readonly="0">0.1</amp_noise></Mock2><x_axis type="group" title="xaxis:" visible="1" removable="0" readonly="0"><Npts type="int" title="Npts:" visible="1" removable="0" readonly="0">513</Npts><x0 type="float" title="x0:" visible="1" removable="0" readonly="0">515</x0><dx type="float" title="dx:" visible="1" removable="0" readonly="0">0.1</dx></x_axis></detector_settings></params></det01><det02 type="group" title="Det 02" visible="1" removable="1" readonly="0"><name type="str" title="Name:" visible="1" removable="0" readonly="0">Det 2D</name><init type="bool" title="Init?:" visible="1" removable="0" readonly="0">1</init><params type="group" title="Settings:" visible="1" removable="0" readonly="0"><main_settings type="group" title="Main Settings:" visible="1" removable="0" readonly="0"><DAQ_type type="list" title="DAQ type:" visible="1" removable="0" readonly="1" limits="['DAQ0D', 'DAQ1D', 'DAQ2D', 'DAQND']" show_pb="1">str('DAQ2D')</DAQ_type><detector_type type="str" title="Detector type:" visible="1" removable="0" readonly="1">Mock</detector_type><module_name type="str" title="Detector Name:" visible="1" removable="0" readonly="1">Det 2D</module_name><plugin_config type="bool_push" title="Plugin Config:" visible="1" removable="0" readonly="0" label="Show Config">0</plugin_config><show_data type="bool" title="Show data and process:" visible="1" removable="0" readonly="0">1</show_data><refresh_time type="float" title="Refresh time (ms):" visible="1" removable="0" readonly="0">50.0</refresh_time><Naverage type="int" title="Naverage" visible="1" removable="0" readonly="0">1</Naverage><show_averaging type="bool" title="Show averaging:" visible="1" removable="0" readonly="0">0</show_averaging><live_averaging type="bool" title="Live 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pymodaq/resources/setup_plugin.py

@@ -0,0 +1,73 @@
+from setuptools import setup as realsetup
+from setuptools import find_packages
+import toml
+from pathlib import Path
+
+
+def setup(path: Path):
+    config = toml.load(path.joinpath('plugin_info.toml'))
+    SHORT_PLUGIN_NAME = config['plugin-info']['SHORT_PLUGIN_NAME']
+    PLUGIN_NAME = f"pymodaq_plugins_{SHORT_PLUGIN_NAME}"
+
+    if not SHORT_PLUGIN_NAME.isidentifier():
+        raise ValueError("'SHORT_PLUGIN_NAME = %s' is not a valid python identifier." % SHORT_PLUGIN_NAME)
+
+    with open(str(path.joinpath(f'src/{PLUGIN_NAME}/resources/VERSION')), 'r') as fvers:
+        version = fvers.read().strip()
+
+
+    with open(path.joinpath('README.rst')) as fd:
+        long_description = fd.read()
+
+    setupOpts = dict(
+        name=PLUGIN_NAME,
+        description=config['plugin-info']['description'],
+        long_description=long_description,
+        long_description_content_type='text/x-rst',
+        license=config['plugin-info']['license'],
+        url=config['plugin-info']['package-url'],
+        author=config['plugin-info']['author'],
+        author_email=config['plugin-info']['author-email'],
+        classifiers=[
+            "Programming Language :: Python :: 3",
+            "Development Status :: 5 - Production/Stable",
+            "Environment :: Other Environment",
+            "Intended Audience :: Science/Research",
+            "Topic :: Scientific/Engineering :: Human Machine Interfaces",
+            "Topic :: Scientific/Engineering :: Visualization",
+            "License :: OSI Approved :: MIT License",
+            "Operating System :: OS Independent",
+            "Topic :: Software Development :: Libraries :: Python Modules",
+            "Topic :: Software Development :: User Interfaces",
+        ], )
+
+
+    entrypoints = {}
+    if 'features' in config:
+        if config['features'].get('instruments', False):
+            entrypoints['pymodaq.instruments'] = f'{SHORT_PLUGIN_NAME} = {PLUGIN_NAME}'
+        if config['features'].get('extensions', False):
+            entrypoints['pymodaq.extensions'] = f'{SHORT_PLUGIN_NAME} = {PLUGIN_NAME}'
+        if config['features'].get('pid_models', False):  # deprecated use 'models'
+            entrypoints['pymodaq.pid_models'] = f'{SHORT_PLUGIN_NAME} = {PLUGIN_NAME}'
+        if config['features'].get('models', False):
+            entrypoints['pymodaq.models'] = f'{SHORT_PLUGIN_NAME} = {PLUGIN_NAME}'
+        if config['features'].get('h5exporters', False):
+            entrypoints['pymodaq.h5exporters'] = f'{SHORT_PLUGIN_NAME} = {PLUGIN_NAME}'
+        if config['features'].get('scanners', False):
+            entrypoints['pymodaq.scanners'] = f'{SHORT_PLUGIN_NAME} = {PLUGIN_NAME}'
+    else:
+        entrypoints['pymodaq.instrument'] = f'{SHORT_PLUGIN_NAME} = {PLUGIN_NAME}'
+
+    entrypoints['pymodaq.plugins'] = f'{SHORT_PLUGIN_NAME} = {PLUGIN_NAME}'  # generic plugin, usefull for the plugin manager
+
+    realsetup(
+        version=version,
+        packages=find_packages(where='./src'),
+        package_dir={'': 'src'},
+        include_package_data=True,
+        entry_points=entrypoints,
+        install_requires=['toml', ]+config['plugin-install']['packages-required'],
+        **setupOpts
+    )
+

pymodaq/utils/array_manipulation.py

@@ -0,0 +1,6 @@
+from pymodaq_utils.array_manipulation import *
+
+from pymodaq_utils.warnings import deprecation_msg
+
+deprecation_msg('Importing array_manipulation stuff from pymodaq is deprecated in pymodaq>5.0.0,'
+                'please use the pymodaq_utils.array_manipulation module')

pymodaq/utils/calibration_camera.py

@@ -0,0 +1,180 @@
+import os
+import sys
+
+from qtpy import QtWidgets
+from qtpy.QtCore import Qt, QObject
+
+from pymodaq_utils.config import get_set_local_dir
+
+from pymodaq_gui.parameter import ioxml
+from pymodaq_gui.parameter import ParameterTree, Parameter
+from pymodaq_gui.plotting.data_viewers.viewer2D import Viewer2D
+from pymodaq_gui.h5modules.browsing import browse_data
+
+from pymodaq.post_treatment.daq_measurement.daq_measurement_main import DAQ_Measurement
+
+
+local_path = get_set_local_dir()
+calib_path = os.path.join(local_path, 'camera_calibrations')
+if not os.path.isdir(calib_path):
+    os.makedirs(calib_path)
+
+
+class CalibrationCamera(QtWidgets.QWidget, QObject):
+    def __init__(self, parent=None, h5filepath=None):
+
+        
+        super(CalibrationCamera, self).__init__()
+        if parent is None:
+            parent = QtWidgets.QWidget()
+
+        self.parent = parent
+        self.setupUI()
+        self.fname = None
+        self.node_path = None
+
+        self.viewer2D.get_action('histo').trigger()
+        self.viewer2D.get_action('roi').trigger()
+
+        self.meas_module.ui.measurement_type_combo.setCurrentText('Sinus')
+        QtWidgets.QApplication.processEvents()
+        self.meas_module.ui.measure_subtype_combo.setCurrentText('dx')
+
+    def setupUI(self):
+
+        params = [{'title': 'Load data:', 'name': 'Load data', 'type': 'action', },
+                  {'title': 'Set Measurement:', 'name': 'Do measurement', 'type': 'action', },
+                  {'title': 'Calib from:', 'name': 'calib_from', 'type': 'list', 'limits': ['Hlineout', 'Vlineout'], },
+                  {'title': 'X axis:', 'name': 'xaxis', 'type': 'group', 'children': [
+                      {'title': 'Units:', 'name': 'xunits', 'type': 'str', 'value': "µm"},
+                      {'title': 'dx (units):', 'name': 'dx_units', 'type': 'float', 'value': 0, },
+                      {'title': 'dx from fit:', 'name': 'dx_fit', 'type': 'float', 'value': 0, },
+                      {'title': 'x Offset:', 'name': 'xoffset', 'type': 'float', 'value': 0., 'readonly': False}, ]},
+                  {'title': 'Y axis:', 'name': 'yaxis', 'type': 'group', 'children': [
+                      {'title': 'Units:', 'name': 'yunits', 'type': 'str', 'value': "µm"},
+                      {'title': 'dy (units):', 'name': 'dy_units', 'type': 'float', 'value': 0., },
+                      {'title': 'dy from fit:', 'name': 'dy_fit', 'type': 'float', 'value': 0., },
+                      {'title': 'y Offset:', 'name': 'yoffset', 'type': 'float', 'value': 0., 'readonly': False}, ]},
+                  {'title': 'Save calib:', 'name': 'Save data', 'type': 'action', },
+                  {'title': 'Data Saved:', 'name': 'data_saved', 'type': 'led', 'value': False, 'readonly': True},
+                  {'title': 'File path:', 'name': 'filepath', 'type': 'text', 'value': '', 'readonly': True},
+                  ]
+
+        layout = QtWidgets.QHBoxLayout()
+        self.parent.setLayout(layout)
+
+        splitter_H = QtWidgets.QSplitter(Qt.Horizontal)
+
+        splitter = QtWidgets.QSplitter(Qt.Vertical)
+
+        widg2D = QtWidgets.QWidget()
+        self.viewer2D = Viewer2D(widg2D)
+        self.viewer2D.title = 'calib'
+        self.viewer2D.get_action('autolevels').trigger()
+
+        splitter.addWidget(widg2D)
+
+        widg_meas = QtWidgets.QWidget()
+        self.meas_module = DAQ_Measurement(widg_meas)
+        splitter.addWidget(widg_meas)
+
+        self.settings_tree = ParameterTree()
+        self.settings = Parameter.create(name='Settings', type='group', children=params)
+        self.settings_tree.setParameters(self.settings, showTop=False)
+        self.settings.sigTreeStateChanged.connect(self.parameter_tree_changed)
+
+        self.settings.child(('Load data')).sigActivated.connect(self.load_data)
+        self.settings.child(('Save data')).sigActivated.connect(self.save_data)
+        self.settings.child(('Do measurement')).sigActivated.connect(self.update_data_meas)
+
+        splitter_H.addWidget(self.settings_tree)
+        splitter_H.addWidget(splitter)
+
+        layout.addWidget(splitter_H)
+
+    def update_data_meas(self):
+        if self.settings.child(('calib_from')).value() == 'Hlineout':
+            xdata = self.viewer2D.data_to_export['data1D']['calib_Hlineout_ROI_00']['x_axis']
+            ydata = self.viewer2D.data_to_export['data1D']['calib_Hlineout_ROI_00']['data']
+        else:
+            xdata = self.viewer2D.data_to_export['data1D']['calib_Vlineout_ROI_00']['x_axis']
+            ydata = self.viewer2D.data_to_export['data1D']['calib_Vlineout_ROI_00']['data']
+
+        self.meas_module.update_data(xdata, ydata)
+
+    def load_data(self):
+        self.data, self.fname, self.node_path = browse_data(ret_all=True)
+        if self.data is not None:
+            self.settings.child('xaxis', 'xoffset').setValue((-self.data.shape[1] / 2))
+            self.settings.child('yaxis', 'yoffset').setValue((-self.data.shape[0] / 2))
+            self.viewer2D.setImage(self.data)
+            self.viewer2D.get_action('histo').trigger()
+            self.viewer2D.get_action('roi').trigger()
+            QtWidgets.QApplication.processEvents()
+
+    def save_data(self):
+        params = [{'title': 'Axis options:', 'name': 'axes', 'type': 'group', 'visible': False, 'expanded': False,
+                   'children': [
+                       {'title': 'X axis:', 'name': 'xaxis', 'type': 'group', 'children': [
+                           {'title': 'Label:', 'name': 'xlabel', 'type': 'str', 'value': "x axis"},
+                           {'title': 'Units:', 'name': 'xunits', 'type': 'str',
+                            'value': self.settings.child('xaxis', 'xunits').value()},
+                           {'title': 'Offset:', 'name': 'xoffset', 'type': 'float', 'default': 0.,
+                            'value': self.settings.child('xaxis', 'xoffset').value()},
+
+                           {'title': 'Scaling', 'name': 'xscaling', 'type': 'float', 'default': 1.,
+                            'value': self.settings.child('xaxis', 'dx_units').value() / self.settings.child('xaxis',
+                                                                                                            'dx_fit').value()},
+                       ]},
+                       {'title': 'Y axis:', 'name': 'yaxis', 'type': 'group', 'children': [
+                           {'title': 'Label:', 'name': 'ylabel', 'type': 'str', 'value': "x axis"},
+                           {'title': 'Units:', 'name': 'yunits', 'type': 'str',
+                            'value': self.settings.child('yaxis', 'yunits').value()},
+                           {'title': 'Offset:', 'name': 'yoffset', 'type': 'float', 'default': 0.,
+                            'value': self.settings.child('yaxis', 'yoffset').value()},
+                           {'title': 'Scaling', 'name': 'yscaling', 'type': 'float', 'default': 1.,
+                            'value': self.settings.child('yaxis', 'dy_units').value() / self.settings.child('yaxis',
+                                                                                                            'dy_fit').value()},
+                       ]},
+                   ]}, ]
+        param_obj = Parameter.create(name='Axes_Settings', type='group', children=params)
+        ioxml.parameter_to_xml_file(param_obj,
+                                    os.path.join(calib_path, os.path.split(self.fname)[1]))
+        self.settings.child(('data_saved')).setValue(True)
+        self.settings.child(('filepath')).setValue(os.path.join(calib_path, os.path.split(self.fname)[1]))
+
+    def parameter_tree_changed(self, param, changes):
+        """
+
+        """
+        for param, change, data in changes:
+            path = self.settings.childPath(param)
+            if path is not None:
+                childName = '.'.join(path)
+            else:
+                childName = param.name()
+            if change == 'childAdded':
+                pass
+
+            elif change == 'value':
+                if param.name() == 'calib_from':
+                    self.update_data_meas()
+                elif param.name() == 'dx_fit':
+                    scaling = self.settings.child('xaxis', 'dx_units').value() / param.value()
+                    self.settings.child('xaxis', 'xoffset').setValue(-scaling * self.data.shape[1] / 2)
+                elif param.name() == 'dy_fit':
+                    scaling = self.settings.child('yaxis', 'dy_units').value() / param.value()
+                    self.settings.child('yaxis', 'yoffset').setValue(-scaling * self.data.shape[0] / 2)
+
+                self.settings.child(('data_saved')).setValue(False)
+
+            elif change == 'parent':
+                pass
+
+
+if __name__ == '__main__':
+    app = QtWidgets.QApplication(sys.argv)
+    win = QtWidgets.QWidget()
+    prog = CalibrationCamera(win)
+    win.show()
+    sys.exit(app.exec_())

pymodaq/utils/chrono_timer.py

@@ -0,0 +1,203 @@
+import time
+from datetime import timedelta
+import sys
+
+from qtpy import QtGui, QtWidgets
+from qtpy.QtCore import Qt, QObject, QTimer
+
+
+from pymodaq_gui.utils.dock import DockArea, Dock
+
+
+class PushButtonShortcut(QtWidgets.QPushButton):
+
+    def __init__(self, *args, shortcut=None, shortcut_widget=None, **kwargs):
+        super().__init__(*args, **kwargs)
+        self.shortcut = None
+        if shortcut_widget is None:
+            shortcut_widget = self
+        if shortcut is not None:
+            self.shortcut = QtWidgets.QShortcut(QtGui.QKeySequence(shortcut), shortcut_widget)
+            self.shortcut.activated.connect(self.click_button)
+
+    def click_button(self):
+        self.click()
+
+
+class ChronoTimer(QObject):
+
+    def __init__(self, parent, duration=None):
+        """
+
+        :param parent:
+        :param Nteams:
+        :param duration: (dict) containing optional keys : days, minutes, seconds, hours, weeks, milliseconds, microseconds
+        """
+        super().__init__()
+        self.area = parent
+        if duration is None:
+            self.type = 'chrono'
+            self.duration = timedelta()
+        else:
+            self.type = 'timer'
+            self.duration = timedelta(**duration)  # seconds
+        self.displayed_time = 0  # in seconds
+        self.started = False
+        self.timer = QTimer()
+        self.timer.setInterval(100)
+        self.timer.timeout.connect(self.display_time)
+
+        self.setup_ui()
+
+    def setup_ui(self):
+
+        self.dock_chrono_timer = Dock(self.type.capitalize())
+        self.area.addDock(self.dock_chrono_timer)
+        self.dock_chrono_timer.float()
+
+        widget_chrono_timer = QtWidgets.QWidget()
+        self.dock_chrono_timer.addWidget(widget_chrono_timer)
+
+        self.layout_lcd = QtWidgets.QVBoxLayout()
+        widget_chrono_timer.setLayout(self.layout_lcd)
+
+        self.dock_chrono_timer.setAutoFillBackground(True)
+        palette = self.dock_chrono_timer.palette()
+        palette.setColor(palette.Window, QtGui.QColor(0, 0, 0))
+        self.dock_chrono_timer.setPalette(palette)
+
+        self.time_lcd = QtWidgets.QLCDNumber(8)
+        self.set_lcd_color(self.time_lcd, 'red')
+        self.layout_lcd.addWidget(self.time_lcd)
+
+        hours, minutes, seconds = self.get_times(self.duration)
+
+        self.time_lcd.display(
+            '{:02d}:{:02d}:{:02d}'.format(hours, minutes, seconds))
+
+        self.dock_controls = Dock('Chrono/Timer Controls')
+        self.area.addDock(self.dock_controls)
+        self.dock_controls.setOrientation('vertical', True)
+        self.dock_controls.setMaximumHeight(150)
+
+        self.widget_controls = QtWidgets.QWidget()
+        self.controls_layout = QtWidgets.QVBoxLayout()
+        self.widget_controls.setLayout(self.controls_layout)
+
+        hor_layout = QtWidgets.QHBoxLayout()
+        hor_widget = QtWidgets.QWidget()
+        hor_widget.setLayout(hor_layout)
+
+        self.controls_layout.addWidget(hor_widget)
+
+        icon = QtGui.QIcon()
+        icon.addPixmap(QtGui.QPixmap("icons:run2.png"), QtGui.QIcon.Normal,
+                       QtGui.QIcon.Off)
+        self.start_pb = PushButtonShortcut(icon, 'Start',
+                                           shortcut='Home', shortcut_widget=self.area)
+        self.start_pb.clicked.connect(self.start)
+        self.start_pb.setToolTip('home ("début") key shorcut')
+
+        hor_layout.addWidget(self.start_pb)
+
+        icon = QtGui.QIcon()
+        icon.addPixmap(QtGui.QPixmap("icons:pause.png"), QtGui.QIcon.Normal,
+                       QtGui.QIcon.Off)
+        self.pause_pb = PushButtonShortcut(icon, 'Pause',
+                                           shortcut='Ctrl+p', shortcut_widget=self.area)
+        self.pause_pb.setCheckable(True)
+        self.pause_pb.setToolTip("Ctrl+p key shortcut")
+        self.pause_pb.clicked.connect(self.pause)
+        hor_layout.addWidget(self.pause_pb)
+
+        icon = QtGui.QIcon()
+        icon.addPixmap(QtGui.QPixmap("icons:Refresh2.png"), QtGui.QIcon.Normal,
+                       QtGui.QIcon.Off)
+        self.reset_pb = PushButtonShortcut(icon, 'Reset',
+                                           shortcut='F5', shortcut_widget=self.area)
+        self.reset_pb.setToolTip('F5 key shortcut')
+        self.reset_pb.clicked.connect(self.reset)
+        hor_layout.addWidget(self.reset_pb)
+
+        self.dock_controls.addWidget(self.widget_controls)
+
+    def get_times(self, duration):
+        seconds = int(duration.total_seconds() % 60)
+        total_minutes = duration.total_seconds() // 60
+        minutes = int(total_minutes % 60)
+        hours = int(total_minutes // 60)
+
+        return hours, minutes, seconds
+
+    def get_elapsed_time(self):
+        return time.perf_counter() - self.ini_time
+
+    def display_time(self):
+        elapsed_time = self.get_elapsed_time()
+        if self.type == 'timer':
+            display_timedelta = self.duration - timedelta(seconds=elapsed_time)
+        else:
+            display_timedelta = self.duration + timedelta(seconds=elapsed_time)
+
+        self.displayed_time = display_timedelta.total_seconds()
+        if display_timedelta.total_seconds() <= 0:
+            self.reset()
+            return
+        else:
+            hours, minutes, seconds = self.get_times(display_timedelta)
+
+            self.time_lcd.display(
+                '{:02d}:{:02d}:{:02d}'.format(hours, minutes, seconds))
+            QtWidgets.QApplication.processEvents()
+
+    def start(self):
+        self.ini_time = time.perf_counter()
+        self.timer.start()
+        self.started = True
+        self.start_pb.setEnabled(False)
+
+    def pause(self):
+        if self.pause_pb.isChecked():
+            self.started = False
+            self.timer.stop()
+            self.paused_time = time.perf_counter()
+        else:
+            elapsed_pause_time = time.perf_counter() - self.paused_time
+            self.ini_time += elapsed_pause_time
+            self.timer.start()
+            self.started = True
+
+    def reset(self):
+        if self.pause_pb.isChecked():
+            self.pause_pb.setChecked(False)
+            QtWidgets.QApplication.processEvents()
+        self.timer.stop()
+        self.start_pb.setEnabled(True)
+        self.started = False
+        hours, minutes, seconds = self.get_times(self.duration)
+        self.time_lcd.display(
+            '{:02d}:{:02d}:{:02d}'.format(hours, minutes, seconds))
+
+    def set_lcd_color(self, lcd, color):
+        palette = lcd.palette()
+        # lcd.setPalette(QtGui.QPalette(Qt.red))
+        if hasattr(Qt, color):
+            palette.setBrush(palette.WindowText, getattr(Qt, color))
+            palette.setColor(palette.Window, QtGui.QColor(0, 0, 0))
+        lcd.setPalette(palette)
+
+
+if __name__ == '__main__':
+    app = QtWidgets.QApplication(sys.argv)
+
+    form = QtWidgets.QWidget()
+    win = QtWidgets.QMainWindow()
+    win.setVisible(False)
+    area = DockArea()
+    win.setCentralWidget(area)
+    win.setWindowTitle('Chrono Timer')
+
+    # prog = ChronoTimer(area, dict(hours=1, minutes=0, seconds=0))
+    prog = ChronoTimer(area)
+    win.show()
+    sys.exit(app.exec_())