pymodaq 4.4.7__py3-none-any.whl → 5.0.1__py3-none-any.whl

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Files changed (415) hide show
  1. pymodaq/__init__.py +57 -91
  2. pymodaq/control_modules/daq_move.py +64 -46
  3. pymodaq/control_modules/daq_move_ui.py +34 -12
  4. pymodaq/control_modules/daq_viewer.py +55 -30
  5. pymodaq/control_modules/daq_viewer_ui.py +6 -6
  6. pymodaq/control_modules/mocks.py +1 -1
  7. pymodaq/control_modules/move_utility_classes.py +51 -43
  8. pymodaq/control_modules/utils.py +43 -20
  9. pymodaq/control_modules/viewer_utility_classes.py +54 -18
  10. pymodaq/daq_utils/daq_utils.py +6 -0
  11. pymodaq/dashboard.py +639 -323
  12. pymodaq/examples/function_plotter.py +13 -12
  13. pymodaq/examples/tcp_client.py +1 -1
  14. pymodaq/extensions/__init__.py +1 -1
  15. pymodaq/extensions/bayesian/bayesian_optimisation.py +44 -32
  16. pymodaq/extensions/bayesian/utils.py +10 -10
  17. pymodaq/extensions/console.py +7 -6
  18. pymodaq/extensions/daq_logger/__init__.py +1 -0
  19. pymodaq/extensions/{daq_logger.py → daq_logger/daq_logger.py} +30 -30
  20. pymodaq/{utils/db/db_logger → extensions/daq_logger/db}/db_logger.py +16 -15
  21. pymodaq/{utils/db/db_logger → extensions/daq_logger/db}/db_logger_models.py +2 -0
  22. pymodaq/{utils/h5modules → extensions/daq_logger}/h5logging.py +7 -8
  23. pymodaq/extensions/daq_scan.py +42 -34
  24. pymodaq/extensions/daq_scan_ui.py +18 -18
  25. pymodaq/extensions/h5browser.py +2 -3
  26. pymodaq/extensions/pid/__init__.py +4 -2
  27. pymodaq/extensions/pid/daq_move_PID.py +3 -3
  28. pymodaq/extensions/pid/pid_controller.py +59 -50
  29. pymodaq/extensions/pid/utils.py +10 -5
  30. pymodaq/extensions/utils.py +33 -3
  31. pymodaq/post_treatment/load_and_plot.py +10 -7
  32. pymodaq/resources/preset_default.xml +1 -1
  33. pymodaq/updater.py +107 -0
  34. pymodaq/utils/array_manipulation.py +4 -384
  35. pymodaq/utils/calibration_camera.py +12 -9
  36. pymodaq/utils/chrono_timer.py +11 -10
  37. pymodaq/utils/config.py +3 -458
  38. pymodaq/utils/daq_utils.py +9 -715
  39. pymodaq/utils/data.py +17 -2959
  40. pymodaq/utils/enums.py +4 -74
  41. pymodaq/utils/exceptions.py +0 -4
  42. pymodaq/utils/gui_utils/__init__.py +8 -8
  43. pymodaq/utils/gui_utils/loader_utils.py +26 -1
  44. pymodaq/utils/gui_utils/utils.py +8 -162
  45. pymodaq/utils/gui_utils/widgets/lcd.py +6 -109
  46. pymodaq/utils/h5modules/__init__.py +0 -4
  47. pymodaq/utils/h5modules/module_saving.py +9 -8
  48. pymodaq/utils/leco/__init__.py +2 -2
  49. pymodaq/utils/leco/daq_move_LECODirector.py +3 -6
  50. pymodaq/utils/leco/daq_xDviewer_LECODirector.py +5 -5
  51. pymodaq/utils/leco/director_utils.py +2 -2
  52. pymodaq/utils/leco/leco_director.py +3 -3
  53. pymodaq/utils/leco/pymodaq_listener.py +4 -3
  54. pymodaq/utils/leco/utils.py +11 -9
  55. pymodaq/utils/logger.py +4 -76
  56. pymodaq/utils/managers/batchscan_manager.py +16 -19
  57. pymodaq/utils/managers/modules_manager.py +30 -17
  58. pymodaq/utils/managers/overshoot_manager.py +48 -6
  59. pymodaq/utils/managers/preset_manager.py +39 -59
  60. pymodaq/utils/managers/preset_manager_utils.py +28 -22
  61. pymodaq/utils/managers/remote_manager.py +12 -10
  62. pymodaq/utils/math_utils.py +4 -582
  63. pymodaq/utils/messenger.py +4 -64
  64. pymodaq/utils/parameter/__init__.py +6 -9
  65. pymodaq/utils/parameter/utils.py +4 -328
  66. pymodaq/utils/scanner/scan_config.py +1 -1
  67. pymodaq/utils/scanner/scan_factory.py +16 -12
  68. pymodaq/utils/{plotting → scanner}/scan_selector.py +19 -20
  69. pymodaq/utils/scanner/scanner.py +10 -8
  70. pymodaq/utils/scanner/scanners/_1d_scanners.py +8 -5
  71. pymodaq/utils/scanner/scanners/_2d_scanners.py +5 -5
  72. pymodaq/utils/scanner/scanners/sequential.py +8 -8
  73. pymodaq/utils/scanner/scanners/tabular.py +9 -9
  74. pymodaq/utils/scanner/utils.py +6 -4
  75. pymodaq/utils/svg/svg_viewer2D.py +3 -4
  76. pymodaq/utils/tcp_ip/mysocket.py +4 -110
  77. pymodaq/utils/tcp_ip/serializer.py +4 -801
  78. pymodaq/utils/tcp_ip/tcp_server_client.py +15 -13
  79. pymodaq-5.0.1.dist-info/METADATA +242 -0
  80. pymodaq-5.0.1.dist-info/RECORD +122 -0
  81. {pymodaq-4.4.7.dist-info → pymodaq-5.0.1.dist-info}/WHEEL +1 -1
  82. {pymodaq-4.4.7.dist-info → pymodaq-5.0.1.dist-info}/entry_points.txt +1 -0
  83. pymodaq/examples/custom_app.py +0 -258
  84. pymodaq/examples/custom_viewer.py +0 -112
  85. pymodaq/examples/parameter_ex.py +0 -138
  86. pymodaq/examples/preset_MockCamera.xml +0 -1
  87. pymodaq/post_treatment/daq_measurement/daq_measurement_GUI.py +0 -142
  88. pymodaq/post_treatment/daq_measurement/daq_measurement_GUI.ui +0 -232
  89. pymodaq/post_treatment/daq_measurement/daq_measurement_main.py +0 -391
  90. pymodaq/post_treatment/daq_measurement/process_from_QtDesigner_DAQ_Measurement_GUI.bat +0 -2
  91. pymodaq/post_treatment/process_to_scalar.py +0 -263
  92. pymodaq/resources/QtDesigner_Ressources/Icon_Library/1d.png +0 -0
  93. pymodaq/resources/QtDesigner_Ressources/Icon_Library/2d.png +0 -0
  94. pymodaq/resources/QtDesigner_Ressources/Icon_Library/3d.png +0 -0
  95. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Add2.png +0 -0
  96. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Add_Step.png +0 -0
  97. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Approve.png +0 -0
  98. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Approve_All.png +0 -0
  99. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Browse_Dir_Path.png +0 -0
  100. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Calculator.png +0 -0
  101. pymodaq/resources/QtDesigner_Ressources/Icon_Library/ChnGroup.png +0 -0
  102. pymodaq/resources/QtDesigner_Ressources/Icon_Library/ChnNum.png +0 -0
  103. pymodaq/resources/QtDesigner_Ressources/Icon_Library/ChnText.png +0 -0
  104. pymodaq/resources/QtDesigner_Ressources/Icon_Library/ChnTime.png +0 -0
  105. pymodaq/resources/QtDesigner_Ressources/Icon_Library/ChnWave.png +0 -0
  106. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Close3.png +0 -0
  107. pymodaq/resources/QtDesigner_Ressources/Icon_Library/CollapseAll.png +0 -0
  108. pymodaq/resources/QtDesigner_Ressources/Icon_Library/CollapseAll_32.png +0 -0
  109. pymodaq/resources/QtDesigner_Ressources/Icon_Library/ColorPicker.png +0 -0
  110. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Contract.png +0 -0
  111. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Create.png +0 -0
  112. pymodaq/resources/QtDesigner_Ressources/Icon_Library/DeleteLayer.png +0 -0
  113. pymodaq/resources/QtDesigner_Ressources/Icon_Library/EditOpen.png +0 -0
  114. pymodaq/resources/QtDesigner_Ressources/Icon_Library/EditRedo.png +0 -0
  115. pymodaq/resources/QtDesigner_Ressources/Icon_Library/EditUndo.png +0 -0
  116. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Ellipse.png +0 -0
  117. pymodaq/resources/QtDesigner_Ressources/Icon_Library/EllipseFilled.png +0 -0
  118. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Error.png +0 -0
  119. pymodaq/resources/QtDesigner_Ressources/Icon_Library/ErrorMessage.png +0 -0
  120. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Error_16.png +0 -0
  121. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Exit.png +0 -0
  122. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Expand.png +0 -0
  123. pymodaq/resources/QtDesigner_Ressources/Icon_Library/ExpandAll.png +0 -0
  124. pymodaq/resources/QtDesigner_Ressources/Icon_Library/ExpandAll_32.png +0 -0
  125. pymodaq/resources/QtDesigner_Ressources/Icon_Library/FFT.png +0 -0
  126. pymodaq/resources/QtDesigner_Ressources/Icon_Library/HLM.ico +0 -0
  127. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Help.png +0 -0
  128. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Help_32.png +0 -0
  129. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Histogram.png +0 -0
  130. pymodaq/resources/QtDesigner_Ressources/Icon_Library/LUT_LookUpTable.png +0 -0
  131. pymodaq/resources/QtDesigner_Ressources/Icon_Library/MagnifyingGlass.png +0 -0
  132. pymodaq/resources/QtDesigner_Ressources/Icon_Library/MagnifyingGlass_24.png +0 -0
  133. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Marker.png +0 -0
  134. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Math.png +0 -0
  135. pymodaq/resources/QtDesigner_Ressources/Icon_Library/MeasurementStudio_32.png +0 -0
  136. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Move.png +0 -0
  137. pymodaq/resources/QtDesigner_Ressources/Icon_Library/MoveDown.png +0 -0
  138. pymodaq/resources/QtDesigner_Ressources/Icon_Library/MoveUp.png +0 -0
  139. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Multiply.png +0 -0
  140. pymodaq/resources/QtDesigner_Ressources/Icon_Library/NewFile.png +0 -0
  141. pymodaq/resources/QtDesigner_Ressources/Icon_Library/NewLayer.png +0 -0
  142. pymodaq/resources/QtDesigner_Ressources/Icon_Library/New_File.png +0 -0
  143. pymodaq/resources/QtDesigner_Ressources/Icon_Library/New_Folder.png +0 -0
  144. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Open.png +0 -0
  145. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Open_1D.png +0 -0
  146. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Open_2D.png +0 -0
  147. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Open_File.png +0 -0
  148. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Open_File_32.png +0 -0
  149. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Open_sim.png +0 -0
  150. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Options.png +0 -0
  151. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Oscilloscope.png +0 -0
  152. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Oscilloscope_16.png +0 -0
  153. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Pass.png +0 -0
  154. pymodaq/resources/QtDesigner_Ressources/Icon_Library/RGB.png +0 -0
  155. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Rectangle.png +0 -0
  156. pymodaq/resources/QtDesigner_Ressources/Icon_Library/RectangleFilled.png +0 -0
  157. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Redo.png +0 -0
  158. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Refresh.png +0 -0
  159. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Refresh2.png +0 -0
  160. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Refresh_32.png +0 -0
  161. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Region.png +0 -0
  162. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Rendezvous.png +0 -0
  163. pymodaq/resources/QtDesigner_Ressources/Icon_Library/SELECT.png +0 -0
  164. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Save.png +0 -0
  165. pymodaq/resources/QtDesigner_Ressources/Icon_Library/SaveAll.png +0 -0
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  167. pymodaq/resources/QtDesigner_Ressources/Icon_Library/SaveAs.png +0 -0
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  170. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Save_32.png +0 -0
  171. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Search.png +0 -0
  172. pymodaq/resources/QtDesigner_Ressources/Icon_Library/SelectPolygon.png +0 -0
  173. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Select_24.png +0 -0
  174. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Settings.png +0 -0
  175. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Snap&Save.png +0 -0
  176. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Snapshot.png +0 -0
  177. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Snapshot2.png +0 -0
  178. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Snapshot2_16.png +0 -0
  179. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Snapshot2_32.png +0 -0
  180. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Spreadsheet.png +0 -0
  181. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Statistics.png +0 -0
  182. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Statistics2.png +0 -0
  183. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Status.png +0 -0
  184. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Subtract.png +0 -0
  185. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Vision.png +0 -0
  186. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Volts.png +0 -0
  187. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Wait2.png +0 -0
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  189. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Zoom_in.png +0 -0
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  195. pymodaq/resources/QtDesigner_Ressources/Icon_Library/autoscale.png +0 -0
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  201. pymodaq/resources/QtDesigner_Ressources/Icon_Library/cartesian.png +0 -0
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  203. pymodaq/resources/QtDesigner_Ressources/Icon_Library/clear_ROI.png +0 -0
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  269. pymodaq/resources/QtDesigner_Ressources/Icon_Library/pole_zero.png +0 -0
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  271. pymodaq/resources/QtDesigner_Ressources/Icon_Library/powerSwitch.png +0 -0
  272. pymodaq/resources/QtDesigner_Ressources/Icon_Library/powerSwitch_16.png +0 -0
  273. pymodaq/resources/QtDesigner_Ressources/Icon_Library/print2.png +0 -0
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  275. pymodaq/resources/QtDesigner_Ressources/Icon_Library/properties.png +0 -0
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  278. pymodaq/resources/QtDesigner_Ressources/Icon_Library/random.png +0 -0
  279. pymodaq/resources/QtDesigner_Ressources/Icon_Library/read2.png +0 -0
  280. pymodaq/resources/QtDesigner_Ressources/Icon_Library/red_light.png +0 -0
  281. pymodaq/resources/QtDesigner_Ressources/Icon_Library/remove.png +0 -0
  282. pymodaq/resources/QtDesigner_Ressources/Icon_Library/reset.png +0 -0
  283. pymodaq/resources/QtDesigner_Ressources/Icon_Library/rgb_icon.png +0 -0
  284. pymodaq/resources/QtDesigner_Ressources/Icon_Library/robot.png +0 -0
  285. pymodaq/resources/QtDesigner_Ressources/Icon_Library/rotation2.png +0 -0
  286. pymodaq/resources/QtDesigner_Ressources/Icon_Library/run2.png +0 -0
  287. pymodaq/resources/QtDesigner_Ressources/Icon_Library/run_all.png +0 -0
  288. pymodaq/resources/QtDesigner_Ressources/Icon_Library/saturation.png +0 -0
  289. pymodaq/resources/QtDesigner_Ressources/Icon_Library/saveTree.png +0 -0
  290. pymodaq/resources/QtDesigner_Ressources/Icon_Library/save_ROI.png +0 -0
  291. pymodaq/resources/QtDesigner_Ressources/Icon_Library/scale_horizontally.png +0 -0
  292. pymodaq/resources/QtDesigner_Ressources/Icon_Library/scale_vertically.png +0 -0
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  303. pymodaq/resources/QtDesigner_Ressources/Icon_Library/start.png +0 -0
  304. pymodaq/resources/QtDesigner_Ressources/Icon_Library/status_cancelled.png +0 -0
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  308. pymodaq/resources/QtDesigner_Ressources/Icon_Library/stop_all.png +0 -0
  309. pymodaq/resources/QtDesigner_Ressources/Icon_Library/sum.png +0 -0
  310. pymodaq/resources/QtDesigner_Ressources/Icon_Library/surfacePlot.png +0 -0
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  315. pymodaq/resources/QtDesigner_Ressources/Icon_Library/utility_small.png +0 -0
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  317. pymodaq/resources/QtDesigner_Ressources/Icon_Library/verify.png +0 -0
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  326. pymodaq/resources/QtDesigner_Ressources/QtDesigner_ressources.bat +0 -2
  327. pymodaq/resources/QtDesigner_Ressources/QtDesigner_ressources.qrc +0 -238
  328. pymodaq/resources/QtDesigner_Ressources/QtDesigner_ressources_rc.py +0 -127453
  329. pymodaq/resources/QtDesigner_Ressources/__init__.py +0 -0
  330. pymodaq/resources/QtDesigner_Ressources/credit.rst +0 -7
  331. pymodaq/resources/QtDesigner_Ressources/icons.svg +0 -142
  332. pymodaq/resources/VERSION +0 -2
  333. pymodaq/resources/config_template.toml +0 -96
  334. pymodaq/resources/triangulation_data.npy +0 -0
  335. pymodaq/utils/abstract/__init__.py +0 -48
  336. pymodaq/utils/db/__init__.py +0 -0
  337. pymodaq/utils/db/db_logger/__init__.py +0 -0
  338. pymodaq/utils/factory.py +0 -82
  339. pymodaq/utils/gui_utils/custom_app.py +0 -133
  340. pymodaq/utils/gui_utils/dock.py +0 -107
  341. pymodaq/utils/gui_utils/file_io.py +0 -94
  342. pymodaq/utils/gui_utils/layout.py +0 -34
  343. pymodaq/utils/gui_utils/list_picker.py +0 -38
  344. pymodaq/utils/gui_utils/widgets/__init__.py +0 -5
  345. pymodaq/utils/gui_utils/widgets/label.py +0 -24
  346. pymodaq/utils/gui_utils/widgets/push.py +0 -149
  347. pymodaq/utils/gui_utils/widgets/qled.py +0 -62
  348. pymodaq/utils/gui_utils/widgets/spinbox.py +0 -24
  349. pymodaq/utils/gui_utils/widgets/table.py +0 -263
  350. pymodaq/utils/gui_utils/widgets/tree_layout.py +0 -188
  351. pymodaq/utils/gui_utils/widgets/tree_toml.py +0 -110
  352. pymodaq/utils/h5modules/backends.py +0 -1022
  353. pymodaq/utils/h5modules/browsing.py +0 -627
  354. pymodaq/utils/h5modules/data_saving.py +0 -1107
  355. pymodaq/utils/h5modules/exporter.py +0 -119
  356. pymodaq/utils/h5modules/exporters/__init__.py +0 -0
  357. pymodaq/utils/h5modules/exporters/base.py +0 -111
  358. pymodaq/utils/h5modules/exporters/flimj.py +0 -63
  359. pymodaq/utils/h5modules/exporters/hyperspy.py +0 -143
  360. pymodaq/utils/h5modules/saving.py +0 -866
  361. pymodaq/utils/h5modules/utils.py +0 -115
  362. pymodaq/utils/managers/action_manager.py +0 -489
  363. pymodaq/utils/managers/parameter_manager.py +0 -279
  364. pymodaq/utils/managers/roi_manager.py +0 -740
  365. pymodaq/utils/parameter/ioxml.py +0 -545
  366. pymodaq/utils/parameter/pymodaq_ptypes/__init__.py +0 -38
  367. pymodaq/utils/parameter/pymodaq_ptypes/bool.py +0 -31
  368. pymodaq/utils/parameter/pymodaq_ptypes/date.py +0 -126
  369. pymodaq/utils/parameter/pymodaq_ptypes/filedir.py +0 -143
  370. pymodaq/utils/parameter/pymodaq_ptypes/itemselect.py +0 -265
  371. pymodaq/utils/parameter/pymodaq_ptypes/led.py +0 -44
  372. pymodaq/utils/parameter/pymodaq_ptypes/list.py +0 -150
  373. pymodaq/utils/parameter/pymodaq_ptypes/numeric.py +0 -18
  374. pymodaq/utils/parameter/pymodaq_ptypes/pixmap.py +0 -175
  375. pymodaq/utils/parameter/pymodaq_ptypes/slide.py +0 -166
  376. pymodaq/utils/parameter/pymodaq_ptypes/table.py +0 -135
  377. pymodaq/utils/parameter/pymodaq_ptypes/tableview.py +0 -149
  378. pymodaq/utils/parameter/pymodaq_ptypes/text.py +0 -142
  379. pymodaq/utils/plotting/__init__.py +0 -0
  380. pymodaq/utils/plotting/data_viewers/__init__.py +0 -10
  381. pymodaq/utils/plotting/data_viewers/base.py +0 -286
  382. pymodaq/utils/plotting/data_viewers/viewer.py +0 -275
  383. pymodaq/utils/plotting/data_viewers/viewer0D.py +0 -298
  384. pymodaq/utils/plotting/data_viewers/viewer1D.py +0 -826
  385. pymodaq/utils/plotting/data_viewers/viewer1Dbasic.py +0 -231
  386. pymodaq/utils/plotting/data_viewers/viewer2D.py +0 -1118
  387. pymodaq/utils/plotting/data_viewers/viewer2D_basic.py +0 -146
  388. pymodaq/utils/plotting/data_viewers/viewerND.py +0 -800
  389. pymodaq/utils/plotting/gant_chart.py +0 -123
  390. pymodaq/utils/plotting/image_viewer.py +0 -97
  391. pymodaq/utils/plotting/items/__init__.py +0 -0
  392. pymodaq/utils/plotting/items/axis_scaled.py +0 -93
  393. pymodaq/utils/plotting/items/crosshair.py +0 -94
  394. pymodaq/utils/plotting/items/image.py +0 -388
  395. pymodaq/utils/plotting/navigator.py +0 -353
  396. pymodaq/utils/plotting/plotter/plotter.py +0 -94
  397. pymodaq/utils/plotting/plotter/plotters/__init__.py +0 -0
  398. pymodaq/utils/plotting/plotter/plotters/matplotlib_plotters.py +0 -134
  399. pymodaq/utils/plotting/plotter/plotters/qt_plotters.py +0 -78
  400. pymodaq/utils/plotting/utils/__init__.py +0 -0
  401. pymodaq/utils/plotting/utils/axes_viewer.py +0 -88
  402. pymodaq/utils/plotting/utils/filter.py +0 -585
  403. pymodaq/utils/plotting/utils/lineout.py +0 -226
  404. pymodaq/utils/plotting/utils/plot_utils.py +0 -579
  405. pymodaq/utils/plotting/utils/signalND.py +0 -1347
  406. pymodaq/utils/plotting/widgets.py +0 -76
  407. pymodaq/utils/qvariant.py +0 -12
  408. pymodaq/utils/slicing.py +0 -63
  409. pymodaq/utils/units.py +0 -216
  410. pymodaq-4.4.7.dist-info/METADATA +0 -163
  411. pymodaq-4.4.7.dist-info/RECORD +0 -446
  412. /pymodaq/{post_treatment/daq_analysis → daq_utils}/__init__.py +0 -0
  413. /pymodaq/{utils/abstract/logger.py → extensions/daq_logger/abstract.py} +0 -0
  414. /pymodaq/{post_treatment/daq_measurement → extensions/daq_logger/db}/__init__.py +0 -0
  415. {pymodaq-4.4.7.dist-info → pymodaq-5.0.1.dist-info}/licenses/LICENSE +0 -0
@@ -1,226 +0,0 @@
1
- # -*- coding: utf-8 -*-
2
- """
3
- Created the 03/11/2022
4
-
5
- @author: Sebastien Weber
6
- """
7
- from collections import OrderedDict
8
- from pyqtgraph import PlotCurveItem
9
- from qtpy.QtCore import QObject, Signal, Slot
10
- from pymodaq.utils.plotting.utils.plot_utils import Data0DWithHistory
11
- from pymodaq.utils.managers.roi_manager import ROIManager
12
- from pymodaq.utils.plotting.items.crosshair import Crosshair
13
- from pymodaq.utils.logger import set_logger, get_module_name
14
- import pymodaq.utils.daq_utils as utils
15
- from pymodaq.utils.logger import set_logger, get_module_name
16
- from pymodaq.utils.data import DataCalculated
17
-
18
- logger = set_logger(get_module_name(__file__))
19
- IMAGE_TYPES = ['red', 'green', 'blue']
20
- COLOR_LIST = list(utils.plot_colors)
21
- COLORS_DICT = dict(red=(255, 0, 0), green=(0, 255, 0), blue=(0, 0, 255), spread=(128, 128, 128))
22
-
23
-
24
- def curve_item_factory(pen='red'):
25
- """
26
- Create a PlotCurveItem with the given pen
27
- Parameters
28
- ----------
29
- pen: any type of arguments accepted by pyqtgraph.function.mkColor or one of the COLORS_DICT key
30
-
31
- Returns
32
- -------
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- PlotCurveItem
34
- """
35
- if isinstance(pen, str):
36
- if pen in COLORS_DICT:
37
- pen = COLORS_DICT[pen]
38
- return PlotCurveItem(pen=pen)
39
-
40
-
41
- class LineoutPlotter(QObject):
42
- """Base class to manage and display data filtered out into lineouts (1D, 0D)
43
-
44
- Should be inherited and subclass some methods as appropriate
45
-
46
- Parameters
47
- ----------
48
- graph_widgets: OrderedDict
49
- Includes plotwidgets to display data
50
- roi_manager:
51
- The ROIManager to create ROIs and manage their properties
52
- crosshair:
53
- The Crosshair object
54
- """
55
-
56
- roi_changed = Signal(dict)
57
- crosshair_lineout_plotted = Signal(dict)
58
- roi_lineout_plotted = Signal(dict)
59
-
60
- lineout_widgets = ['int'] # should be reimplemented see viewer2D
61
-
62
- def __init__(self, graph_widgets: OrderedDict, roi_manager: ROIManager, crosshair: Crosshair):
63
- super().__init__()
64
-
65
- self._roi_manager = roi_manager
66
- self._crosshair = crosshair
67
-
68
- self._lineout_widgets = graph_widgets['lineouts']
69
-
70
- self.integrated_data = Data0DWithHistory()
71
-
72
- self._roi_curves = OrderedDict()
73
- self._crosshair_curves = OrderedDict()
74
- self._data_integrated = []
75
-
76
- self.setup_crosshair()
77
-
78
- self._roi_manager.new_ROI_signal.connect(self.add_ROI)
79
- self._roi_manager.remove_ROI_signal.connect(self.remove_ROI)
80
- self._roi_manager.roi_value_changed.connect(self.update_roi)
81
-
82
- def plot_roi_lineouts(self, roi_dicts):
83
- self.integrated_data.add_datas({roi_key: roi_dicts[roi_key].int_data for roi_key in roi_dicts})
84
-
85
- # for roi_key, lineout_data in roi_dicts.items():
86
- # if roi_key in self._roi_curves:
87
- # self._roi_curves[roi_key]['int'].setData(self.integrated_data.xaxis,
88
- # self.integrated_data.datas[roi_key])
89
- # self.plot_other_lineouts(roi_dicts)
90
- #
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- # logger.debug('roi lineouts plotted')
92
- # self.roi_lineout_plotted.emit(roi_dicts)
93
-
94
- def plot_other_lineouts(self, roi_dicts):
95
- raise NotImplementedError
96
-
97
- def plot_crosshair_lineouts(self, crosshair_dict):
98
- self.plot_other_crosshair_lineouts(crosshair_dict)
99
-
100
- logger.debug('crosshair lineouts plotted')
101
- self.crosshair_lineout_plotted.emit(crosshair_dict)
102
-
103
- def plot_other_crosshair_lineouts(self, crosshair_dict):
104
- raise NotImplementedError
105
-
106
- def get_lineout_widget(self, name):
107
- if name not in self.lineout_widgets:
108
- raise KeyError(f'The lineout_widget reference should be within {self.lineout_widgets} not {name}')
109
- return self._lineout_widgets[name]
110
-
111
- @Slot(str, tuple)
112
- def update_roi(self, roi_key, param_changed):
113
- param, param_value = param_changed
114
-
115
- if param.name() == 'Color':
116
- if roi_key in self._roi_curves:
117
- for curve in self._roi_curves[roi_key].values():
118
- curve.setPen(param_value)
119
-
120
- self.roi_changed.emit(self._roi_manager.ROIs)
121
-
122
- @Slot(str)
123
- def remove_ROI(self, roi_name):
124
- index = int(roi_name.split('_')[1])
125
- self.remove_roi_lineout_items(index)
126
- self.roi_changed.emit(self._roi_manager.ROIs)
127
-
128
- @Slot(int, str)
129
- def add_ROI(self, newindex, roi_type):
130
- item = self._roi_manager.get_roi_from_index(newindex)
131
- item.sigRegionChangeFinished.connect(lambda: self.roi_changed.emit(self._roi_manager.ROIs))
132
- item_param = self._roi_manager.settings.child('ROIs', 'ROI_{:02d}'.format(newindex))
133
- color = item_param.child('Color').value()
134
-
135
- #self.add_roi_lineout_items(newindex, color)
136
- self.roi_changed.emit(self._roi_manager.ROIs)
137
-
138
- def add_roi_lineout_items(self, index, pen):
139
- """
140
- Add specifics lineouts generated from ROIs
141
- Parameters
142
- ----------
143
- index: (int) index of the ROI generating these lineouts
144
- pen: (str, tuple) any argument able to generate a QPen, see pyqtgraph.functions.mkPen
145
- """
146
- self._roi_curves[f'ROI_{index:02d}'] = \
147
- {curv_key: curve_item_factory(pen) for curv_key in self.lineout_widgets}
148
- self.add_lineout_items(*self._roi_curves[f'ROI_{index:02d}'].values())
149
-
150
- def remove_roi_lineout_items(self, index):
151
- """
152
- Remove specifics lineouts generated from ROI referenced by a unique integer
153
- Parameters
154
- ----------
155
- index: (int) index of the ROI generating these lineouts
156
- """
157
- items = self._roi_curves.pop(f'ROI_{index:02d}')
158
- self.remove_lineout_items(*items.values())
159
-
160
- def add_lineout_items(self, *curve_items):
161
- """
162
- Add Curve items sequentially to lineouts widgets: (hor, ver and int)
163
- Parameters
164
- ----------
165
- curve_items: (PlotCurveItem) at most 3 of them
166
- """
167
- for ind, curve_item in enumerate(curve_items):
168
- self.get_lineout_widget(self.lineout_widgets[ind]).addItem(curve_item)
169
-
170
- def remove_lineout_items(self, *curve_items):
171
- """
172
- Remove Curve items sequentially to lineouts widgets: (hor, ver and int)
173
- Parameters
174
- ----------
175
- curve_items: (PlotCurveItem) at most 3 of them
176
- """
177
-
178
- for ind, curve_item in enumerate(curve_items):
179
- self.get_lineout_widget(self.lineout_widgets[ind]).removeItem(curve_item)
180
-
181
- @Slot(bool)
182
- def roi_clicked(self, isroichecked=True):
183
- self._roi_manager.roiwidget.setVisible(isroichecked)
184
-
185
- for k, roi in self._roi_manager.ROIs.items():
186
- roi.setVisible(isroichecked)
187
- for item in self.get_roi_curves_triplet()[k].values():
188
- item.setVisible(isroichecked)
189
-
190
- @Slot(bool)
191
- def crosshair_clicked(self, iscrosshairchecked=True):
192
- for image_key in IMAGE_TYPES:
193
- self.show_crosshair_curves(image_key, iscrosshairchecked)
194
-
195
- def get_roi_curves_triplet(self):
196
- """
197
- Get the dictionary (one key by ROI) containing dicts with ROI PlotCurveItem
198
-
199
- Example:
200
- --------
201
- >>> roi_dict_triplet = self.get_roi_cruves_triplet()
202
- >>> hor_curve = roi_dict_triplet['ROI_00']['hor'] # where 'hor' is an entry of self.lineout_widgets
203
- """
204
- return self._roi_curves
205
-
206
- def get_crosshair_curves_triplet(self):
207
- """
208
- Get the dictionary (one key by ImageItem, see IMAGE_TYPES) containing dicts with PlotCurveItem
209
-
210
- Example:
211
- --------
212
- >>> crosshair_dict_triplet = self.get_crosshair_curves_triplet()
213
- >>> hor_curve = crosshair_dict_triplet['blue']['hor'] # where 'hor' is an entry of self.lineout_widgets
214
- """
215
- return self._crosshair_curves
216
-
217
- def get_crosshair_curve_triplet(self, curve_name):
218
- return self._crosshair_curves[curve_name]
219
-
220
- def setup_crosshair(self):
221
- """to reimplement if needed"""
222
- pass
223
-
224
- def show_crosshair_curves(self, curve_key, show=True):
225
- """to reimplement if needed"""
226
- pass