pymodaq 4.4.7__py3-none-any.whl → 5.0.1__py3-none-any.whl

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Files changed (415) hide show
  1. pymodaq/__init__.py +57 -91
  2. pymodaq/control_modules/daq_move.py +64 -46
  3. pymodaq/control_modules/daq_move_ui.py +34 -12
  4. pymodaq/control_modules/daq_viewer.py +55 -30
  5. pymodaq/control_modules/daq_viewer_ui.py +6 -6
  6. pymodaq/control_modules/mocks.py +1 -1
  7. pymodaq/control_modules/move_utility_classes.py +51 -43
  8. pymodaq/control_modules/utils.py +43 -20
  9. pymodaq/control_modules/viewer_utility_classes.py +54 -18
  10. pymodaq/daq_utils/daq_utils.py +6 -0
  11. pymodaq/dashboard.py +639 -323
  12. pymodaq/examples/function_plotter.py +13 -12
  13. pymodaq/examples/tcp_client.py +1 -1
  14. pymodaq/extensions/__init__.py +1 -1
  15. pymodaq/extensions/bayesian/bayesian_optimisation.py +44 -32
  16. pymodaq/extensions/bayesian/utils.py +10 -10
  17. pymodaq/extensions/console.py +7 -6
  18. pymodaq/extensions/daq_logger/__init__.py +1 -0
  19. pymodaq/extensions/{daq_logger.py → daq_logger/daq_logger.py} +30 -30
  20. pymodaq/{utils/db/db_logger → extensions/daq_logger/db}/db_logger.py +16 -15
  21. pymodaq/{utils/db/db_logger → extensions/daq_logger/db}/db_logger_models.py +2 -0
  22. pymodaq/{utils/h5modules → extensions/daq_logger}/h5logging.py +7 -8
  23. pymodaq/extensions/daq_scan.py +42 -34
  24. pymodaq/extensions/daq_scan_ui.py +18 -18
  25. pymodaq/extensions/h5browser.py +2 -3
  26. pymodaq/extensions/pid/__init__.py +4 -2
  27. pymodaq/extensions/pid/daq_move_PID.py +3 -3
  28. pymodaq/extensions/pid/pid_controller.py +59 -50
  29. pymodaq/extensions/pid/utils.py +10 -5
  30. pymodaq/extensions/utils.py +33 -3
  31. pymodaq/post_treatment/load_and_plot.py +10 -7
  32. pymodaq/resources/preset_default.xml +1 -1
  33. pymodaq/updater.py +107 -0
  34. pymodaq/utils/array_manipulation.py +4 -384
  35. pymodaq/utils/calibration_camera.py +12 -9
  36. pymodaq/utils/chrono_timer.py +11 -10
  37. pymodaq/utils/config.py +3 -458
  38. pymodaq/utils/daq_utils.py +9 -715
  39. pymodaq/utils/data.py +17 -2959
  40. pymodaq/utils/enums.py +4 -74
  41. pymodaq/utils/exceptions.py +0 -4
  42. pymodaq/utils/gui_utils/__init__.py +8 -8
  43. pymodaq/utils/gui_utils/loader_utils.py +26 -1
  44. pymodaq/utils/gui_utils/utils.py +8 -162
  45. pymodaq/utils/gui_utils/widgets/lcd.py +6 -109
  46. pymodaq/utils/h5modules/__init__.py +0 -4
  47. pymodaq/utils/h5modules/module_saving.py +9 -8
  48. pymodaq/utils/leco/__init__.py +2 -2
  49. pymodaq/utils/leco/daq_move_LECODirector.py +3 -6
  50. pymodaq/utils/leco/daq_xDviewer_LECODirector.py +5 -5
  51. pymodaq/utils/leco/director_utils.py +2 -2
  52. pymodaq/utils/leco/leco_director.py +3 -3
  53. pymodaq/utils/leco/pymodaq_listener.py +4 -3
  54. pymodaq/utils/leco/utils.py +11 -9
  55. pymodaq/utils/logger.py +4 -76
  56. pymodaq/utils/managers/batchscan_manager.py +16 -19
  57. pymodaq/utils/managers/modules_manager.py +30 -17
  58. pymodaq/utils/managers/overshoot_manager.py +48 -6
  59. pymodaq/utils/managers/preset_manager.py +39 -59
  60. pymodaq/utils/managers/preset_manager_utils.py +28 -22
  61. pymodaq/utils/managers/remote_manager.py +12 -10
  62. pymodaq/utils/math_utils.py +4 -582
  63. pymodaq/utils/messenger.py +4 -64
  64. pymodaq/utils/parameter/__init__.py +6 -9
  65. pymodaq/utils/parameter/utils.py +4 -328
  66. pymodaq/utils/scanner/scan_config.py +1 -1
  67. pymodaq/utils/scanner/scan_factory.py +16 -12
  68. pymodaq/utils/{plotting → scanner}/scan_selector.py +19 -20
  69. pymodaq/utils/scanner/scanner.py +10 -8
  70. pymodaq/utils/scanner/scanners/_1d_scanners.py +8 -5
  71. pymodaq/utils/scanner/scanners/_2d_scanners.py +5 -5
  72. pymodaq/utils/scanner/scanners/sequential.py +8 -8
  73. pymodaq/utils/scanner/scanners/tabular.py +9 -9
  74. pymodaq/utils/scanner/utils.py +6 -4
  75. pymodaq/utils/svg/svg_viewer2D.py +3 -4
  76. pymodaq/utils/tcp_ip/mysocket.py +4 -110
  77. pymodaq/utils/tcp_ip/serializer.py +4 -801
  78. pymodaq/utils/tcp_ip/tcp_server_client.py +15 -13
  79. pymodaq-5.0.1.dist-info/METADATA +242 -0
  80. pymodaq-5.0.1.dist-info/RECORD +122 -0
  81. {pymodaq-4.4.7.dist-info → pymodaq-5.0.1.dist-info}/WHEEL +1 -1
  82. {pymodaq-4.4.7.dist-info → pymodaq-5.0.1.dist-info}/entry_points.txt +1 -0
  83. pymodaq/examples/custom_app.py +0 -258
  84. pymodaq/examples/custom_viewer.py +0 -112
  85. pymodaq/examples/parameter_ex.py +0 -138
  86. pymodaq/examples/preset_MockCamera.xml +0 -1
  87. pymodaq/post_treatment/daq_measurement/daq_measurement_GUI.py +0 -142
  88. pymodaq/post_treatment/daq_measurement/daq_measurement_GUI.ui +0 -232
  89. pymodaq/post_treatment/daq_measurement/daq_measurement_main.py +0 -391
  90. pymodaq/post_treatment/daq_measurement/process_from_QtDesigner_DAQ_Measurement_GUI.bat +0 -2
  91. pymodaq/post_treatment/process_to_scalar.py +0 -263
  92. pymodaq/resources/QtDesigner_Ressources/Icon_Library/1d.png +0 -0
  93. pymodaq/resources/QtDesigner_Ressources/Icon_Library/2d.png +0 -0
  94. pymodaq/resources/QtDesigner_Ressources/Icon_Library/3d.png +0 -0
  95. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Add2.png +0 -0
  96. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Add_Step.png +0 -0
  97. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Approve.png +0 -0
  98. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Approve_All.png +0 -0
  99. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Browse_Dir_Path.png +0 -0
  100. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Calculator.png +0 -0
  101. pymodaq/resources/QtDesigner_Ressources/Icon_Library/ChnGroup.png +0 -0
  102. pymodaq/resources/QtDesigner_Ressources/Icon_Library/ChnNum.png +0 -0
  103. pymodaq/resources/QtDesigner_Ressources/Icon_Library/ChnText.png +0 -0
  104. pymodaq/resources/QtDesigner_Ressources/Icon_Library/ChnTime.png +0 -0
  105. pymodaq/resources/QtDesigner_Ressources/Icon_Library/ChnWave.png +0 -0
  106. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Close3.png +0 -0
  107. pymodaq/resources/QtDesigner_Ressources/Icon_Library/CollapseAll.png +0 -0
  108. pymodaq/resources/QtDesigner_Ressources/Icon_Library/CollapseAll_32.png +0 -0
  109. pymodaq/resources/QtDesigner_Ressources/Icon_Library/ColorPicker.png +0 -0
  110. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Contract.png +0 -0
  111. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Create.png +0 -0
  112. pymodaq/resources/QtDesigner_Ressources/Icon_Library/DeleteLayer.png +0 -0
  113. pymodaq/resources/QtDesigner_Ressources/Icon_Library/EditOpen.png +0 -0
  114. pymodaq/resources/QtDesigner_Ressources/Icon_Library/EditRedo.png +0 -0
  115. pymodaq/resources/QtDesigner_Ressources/Icon_Library/EditUndo.png +0 -0
  116. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Ellipse.png +0 -0
  117. pymodaq/resources/QtDesigner_Ressources/Icon_Library/EllipseFilled.png +0 -0
  118. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Error.png +0 -0
  119. pymodaq/resources/QtDesigner_Ressources/Icon_Library/ErrorMessage.png +0 -0
  120. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Error_16.png +0 -0
  121. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Exit.png +0 -0
  122. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Expand.png +0 -0
  123. pymodaq/resources/QtDesigner_Ressources/Icon_Library/ExpandAll.png +0 -0
  124. pymodaq/resources/QtDesigner_Ressources/Icon_Library/ExpandAll_32.png +0 -0
  125. pymodaq/resources/QtDesigner_Ressources/Icon_Library/FFT.png +0 -0
  126. pymodaq/resources/QtDesigner_Ressources/Icon_Library/HLM.ico +0 -0
  127. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Help.png +0 -0
  128. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Help_32.png +0 -0
  129. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Histogram.png +0 -0
  130. pymodaq/resources/QtDesigner_Ressources/Icon_Library/LUT_LookUpTable.png +0 -0
  131. pymodaq/resources/QtDesigner_Ressources/Icon_Library/MagnifyingGlass.png +0 -0
  132. pymodaq/resources/QtDesigner_Ressources/Icon_Library/MagnifyingGlass_24.png +0 -0
  133. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Marker.png +0 -0
  134. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Math.png +0 -0
  135. pymodaq/resources/QtDesigner_Ressources/Icon_Library/MeasurementStudio_32.png +0 -0
  136. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Move.png +0 -0
  137. pymodaq/resources/QtDesigner_Ressources/Icon_Library/MoveDown.png +0 -0
  138. pymodaq/resources/QtDesigner_Ressources/Icon_Library/MoveUp.png +0 -0
  139. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Multiply.png +0 -0
  140. pymodaq/resources/QtDesigner_Ressources/Icon_Library/NewFile.png +0 -0
  141. pymodaq/resources/QtDesigner_Ressources/Icon_Library/NewLayer.png +0 -0
  142. pymodaq/resources/QtDesigner_Ressources/Icon_Library/New_File.png +0 -0
  143. pymodaq/resources/QtDesigner_Ressources/Icon_Library/New_Folder.png +0 -0
  144. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Open.png +0 -0
  145. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Open_1D.png +0 -0
  146. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Open_2D.png +0 -0
  147. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Open_File.png +0 -0
  148. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Open_File_32.png +0 -0
  149. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Open_sim.png +0 -0
  150. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Options.png +0 -0
  151. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Oscilloscope.png +0 -0
  152. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Oscilloscope_16.png +0 -0
  153. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Pass.png +0 -0
  154. pymodaq/resources/QtDesigner_Ressources/Icon_Library/RGB.png +0 -0
  155. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Rectangle.png +0 -0
  156. pymodaq/resources/QtDesigner_Ressources/Icon_Library/RectangleFilled.png +0 -0
  157. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Redo.png +0 -0
  158. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Refresh.png +0 -0
  159. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Refresh2.png +0 -0
  160. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Refresh_32.png +0 -0
  161. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Region.png +0 -0
  162. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Rendezvous.png +0 -0
  163. pymodaq/resources/QtDesigner_Ressources/Icon_Library/SELECT.png +0 -0
  164. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Save.png +0 -0
  165. pymodaq/resources/QtDesigner_Ressources/Icon_Library/SaveAll.png +0 -0
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  167. pymodaq/resources/QtDesigner_Ressources/Icon_Library/SaveAs.png +0 -0
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  170. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Save_32.png +0 -0
  171. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Search.png +0 -0
  172. pymodaq/resources/QtDesigner_Ressources/Icon_Library/SelectPolygon.png +0 -0
  173. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Select_24.png +0 -0
  174. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Settings.png +0 -0
  175. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Snap&Save.png +0 -0
  176. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Snapshot.png +0 -0
  177. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Snapshot2.png +0 -0
  178. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Snapshot2_16.png +0 -0
  179. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Snapshot2_32.png +0 -0
  180. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Spreadsheet.png +0 -0
  181. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Statistics.png +0 -0
  182. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Statistics2.png +0 -0
  183. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Status.png +0 -0
  184. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Subtract.png +0 -0
  185. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Vision.png +0 -0
  186. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Volts.png +0 -0
  187. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Wait2.png +0 -0
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  189. pymodaq/resources/QtDesigner_Ressources/Icon_Library/Zoom_in.png +0 -0
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  195. pymodaq/resources/QtDesigner_Ressources/Icon_Library/autoscale.png +0 -0
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  201. pymodaq/resources/QtDesigner_Ressources/Icon_Library/cartesian.png +0 -0
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  203. pymodaq/resources/QtDesigner_Ressources/Icon_Library/clear_ROI.png +0 -0
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  267. pymodaq/resources/QtDesigner_Ressources/Icon_Library/play.png +0 -0
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  269. pymodaq/resources/QtDesigner_Ressources/Icon_Library/pole_zero.png +0 -0
  270. pymodaq/resources/QtDesigner_Ressources/Icon_Library/powerMeter.png +0 -0
  271. pymodaq/resources/QtDesigner_Ressources/Icon_Library/powerSwitch.png +0 -0
  272. pymodaq/resources/QtDesigner_Ressources/Icon_Library/powerSwitch_16.png +0 -0
  273. pymodaq/resources/QtDesigner_Ressources/Icon_Library/print2.png +0 -0
  274. pymodaq/resources/QtDesigner_Ressources/Icon_Library/print2_32.png +0 -0
  275. pymodaq/resources/QtDesigner_Ressources/Icon_Library/properties.png +0 -0
  276. pymodaq/resources/QtDesigner_Ressources/Icon_Library/r_icon.png +0 -0
  277. pymodaq/resources/QtDesigner_Ressources/Icon_Library/radiocontrolbutton.png +0 -0
  278. pymodaq/resources/QtDesigner_Ressources/Icon_Library/random.png +0 -0
  279. pymodaq/resources/QtDesigner_Ressources/Icon_Library/read2.png +0 -0
  280. pymodaq/resources/QtDesigner_Ressources/Icon_Library/red_light.png +0 -0
  281. pymodaq/resources/QtDesigner_Ressources/Icon_Library/remove.png +0 -0
  282. pymodaq/resources/QtDesigner_Ressources/Icon_Library/reset.png +0 -0
  283. pymodaq/resources/QtDesigner_Ressources/Icon_Library/rgb_icon.png +0 -0
  284. pymodaq/resources/QtDesigner_Ressources/Icon_Library/robot.png +0 -0
  285. pymodaq/resources/QtDesigner_Ressources/Icon_Library/rotation2.png +0 -0
  286. pymodaq/resources/QtDesigner_Ressources/Icon_Library/run2.png +0 -0
  287. pymodaq/resources/QtDesigner_Ressources/Icon_Library/run_all.png +0 -0
  288. pymodaq/resources/QtDesigner_Ressources/Icon_Library/saturation.png +0 -0
  289. pymodaq/resources/QtDesigner_Ressources/Icon_Library/saveTree.png +0 -0
  290. pymodaq/resources/QtDesigner_Ressources/Icon_Library/save_ROI.png +0 -0
  291. pymodaq/resources/QtDesigner_Ressources/Icon_Library/scale_horizontally.png +0 -0
  292. pymodaq/resources/QtDesigner_Ressources/Icon_Library/scale_vertically.png +0 -0
  293. pymodaq/resources/QtDesigner_Ressources/Icon_Library/search2.png +0 -0
  294. pymodaq/resources/QtDesigner_Ressources/Icon_Library/select2.png +0 -0
  295. pymodaq/resources/QtDesigner_Ressources/Icon_Library/select_all.png +0 -0
  296. pymodaq/resources/QtDesigner_Ressources/Icon_Library/select_all2.png +0 -0
  297. pymodaq/resources/QtDesigner_Ressources/Icon_Library/select_none.png +0 -0
  298. pymodaq/resources/QtDesigner_Ressources/Icon_Library/sequence.png +0 -0
  299. pymodaq/resources/QtDesigner_Ressources/Icon_Library/sequence2.png +0 -0
  300. pymodaq/resources/QtDesigner_Ressources/Icon_Library/snap.png +0 -0
  301. pymodaq/resources/QtDesigner_Ressources/Icon_Library/sort_ascend.png +0 -0
  302. pymodaq/resources/QtDesigner_Ressources/Icon_Library/spectrumAnalyzer.png +0 -0
  303. pymodaq/resources/QtDesigner_Ressources/Icon_Library/start.png +0 -0
  304. pymodaq/resources/QtDesigner_Ressources/Icon_Library/status_cancelled.png +0 -0
  305. pymodaq/resources/QtDesigner_Ressources/Icon_Library/stop.png +0 -0
  306. pymodaq/resources/QtDesigner_Ressources/Icon_Library/stop2.png +0 -0
  307. pymodaq/resources/QtDesigner_Ressources/Icon_Library/stop3.png +0 -0
  308. pymodaq/resources/QtDesigner_Ressources/Icon_Library/stop_all.png +0 -0
  309. pymodaq/resources/QtDesigner_Ressources/Icon_Library/sum.png +0 -0
  310. pymodaq/resources/QtDesigner_Ressources/Icon_Library/surfacePlot.png +0 -0
  311. pymodaq/resources/QtDesigner_Ressources/Icon_Library/target.png +0 -0
  312. pymodaq/resources/QtDesigner_Ressources/Icon_Library/tree.png +0 -0
  313. pymodaq/resources/QtDesigner_Ressources/Icon_Library/updateTree.png +0 -0
  314. pymodaq/resources/QtDesigner_Ressources/Icon_Library/utility2.png +0 -0
  315. pymodaq/resources/QtDesigner_Ressources/Icon_Library/utility_small.png +0 -0
  316. pymodaq/resources/QtDesigner_Ressources/Icon_Library/vector.png +0 -0
  317. pymodaq/resources/QtDesigner_Ressources/Icon_Library/verify.png +0 -0
  318. pymodaq/resources/QtDesigner_Ressources/Icon_Library/video.png +0 -0
  319. pymodaq/resources/QtDesigner_Ressources/Icon_Library/wait.png +0 -0
  320. pymodaq/resources/QtDesigner_Ressources/Icon_Library/waterfallPlot.png +0 -0
  321. pymodaq/resources/QtDesigner_Ressources/Icon_Library/watershed.png +0 -0
  322. pymodaq/resources/QtDesigner_Ressources/Icon_Library/yellow_light.png +0 -0
  323. pymodaq/resources/QtDesigner_Ressources/Icon_Library/zip_file.png +0 -0
  324. pymodaq/resources/QtDesigner_Ressources/Icon_Library/zoomAuto.png +0 -0
  325. pymodaq/resources/QtDesigner_Ressources/Icon_Library/zoomReset.png +0 -0
  326. pymodaq/resources/QtDesigner_Ressources/QtDesigner_ressources.bat +0 -2
  327. pymodaq/resources/QtDesigner_Ressources/QtDesigner_ressources.qrc +0 -238
  328. pymodaq/resources/QtDesigner_Ressources/QtDesigner_ressources_rc.py +0 -127453
  329. pymodaq/resources/QtDesigner_Ressources/__init__.py +0 -0
  330. pymodaq/resources/QtDesigner_Ressources/credit.rst +0 -7
  331. pymodaq/resources/QtDesigner_Ressources/icons.svg +0 -142
  332. pymodaq/resources/VERSION +0 -2
  333. pymodaq/resources/config_template.toml +0 -96
  334. pymodaq/resources/triangulation_data.npy +0 -0
  335. pymodaq/utils/abstract/__init__.py +0 -48
  336. pymodaq/utils/db/__init__.py +0 -0
  337. pymodaq/utils/db/db_logger/__init__.py +0 -0
  338. pymodaq/utils/factory.py +0 -82
  339. pymodaq/utils/gui_utils/custom_app.py +0 -133
  340. pymodaq/utils/gui_utils/dock.py +0 -107
  341. pymodaq/utils/gui_utils/file_io.py +0 -94
  342. pymodaq/utils/gui_utils/layout.py +0 -34
  343. pymodaq/utils/gui_utils/list_picker.py +0 -38
  344. pymodaq/utils/gui_utils/widgets/__init__.py +0 -5
  345. pymodaq/utils/gui_utils/widgets/label.py +0 -24
  346. pymodaq/utils/gui_utils/widgets/push.py +0 -149
  347. pymodaq/utils/gui_utils/widgets/qled.py +0 -62
  348. pymodaq/utils/gui_utils/widgets/spinbox.py +0 -24
  349. pymodaq/utils/gui_utils/widgets/table.py +0 -263
  350. pymodaq/utils/gui_utils/widgets/tree_layout.py +0 -188
  351. pymodaq/utils/gui_utils/widgets/tree_toml.py +0 -110
  352. pymodaq/utils/h5modules/backends.py +0 -1022
  353. pymodaq/utils/h5modules/browsing.py +0 -627
  354. pymodaq/utils/h5modules/data_saving.py +0 -1107
  355. pymodaq/utils/h5modules/exporter.py +0 -119
  356. pymodaq/utils/h5modules/exporters/__init__.py +0 -0
  357. pymodaq/utils/h5modules/exporters/base.py +0 -111
  358. pymodaq/utils/h5modules/exporters/flimj.py +0 -63
  359. pymodaq/utils/h5modules/exporters/hyperspy.py +0 -143
  360. pymodaq/utils/h5modules/saving.py +0 -866
  361. pymodaq/utils/h5modules/utils.py +0 -115
  362. pymodaq/utils/managers/action_manager.py +0 -489
  363. pymodaq/utils/managers/parameter_manager.py +0 -279
  364. pymodaq/utils/managers/roi_manager.py +0 -740
  365. pymodaq/utils/parameter/ioxml.py +0 -545
  366. pymodaq/utils/parameter/pymodaq_ptypes/__init__.py +0 -38
  367. pymodaq/utils/parameter/pymodaq_ptypes/bool.py +0 -31
  368. pymodaq/utils/parameter/pymodaq_ptypes/date.py +0 -126
  369. pymodaq/utils/parameter/pymodaq_ptypes/filedir.py +0 -143
  370. pymodaq/utils/parameter/pymodaq_ptypes/itemselect.py +0 -265
  371. pymodaq/utils/parameter/pymodaq_ptypes/led.py +0 -44
  372. pymodaq/utils/parameter/pymodaq_ptypes/list.py +0 -150
  373. pymodaq/utils/parameter/pymodaq_ptypes/numeric.py +0 -18
  374. pymodaq/utils/parameter/pymodaq_ptypes/pixmap.py +0 -175
  375. pymodaq/utils/parameter/pymodaq_ptypes/slide.py +0 -166
  376. pymodaq/utils/parameter/pymodaq_ptypes/table.py +0 -135
  377. pymodaq/utils/parameter/pymodaq_ptypes/tableview.py +0 -149
  378. pymodaq/utils/parameter/pymodaq_ptypes/text.py +0 -142
  379. pymodaq/utils/plotting/__init__.py +0 -0
  380. pymodaq/utils/plotting/data_viewers/__init__.py +0 -10
  381. pymodaq/utils/plotting/data_viewers/base.py +0 -286
  382. pymodaq/utils/plotting/data_viewers/viewer.py +0 -275
  383. pymodaq/utils/plotting/data_viewers/viewer0D.py +0 -298
  384. pymodaq/utils/plotting/data_viewers/viewer1D.py +0 -826
  385. pymodaq/utils/plotting/data_viewers/viewer1Dbasic.py +0 -231
  386. pymodaq/utils/plotting/data_viewers/viewer2D.py +0 -1118
  387. pymodaq/utils/plotting/data_viewers/viewer2D_basic.py +0 -146
  388. pymodaq/utils/plotting/data_viewers/viewerND.py +0 -800
  389. pymodaq/utils/plotting/gant_chart.py +0 -123
  390. pymodaq/utils/plotting/image_viewer.py +0 -97
  391. pymodaq/utils/plotting/items/__init__.py +0 -0
  392. pymodaq/utils/plotting/items/axis_scaled.py +0 -93
  393. pymodaq/utils/plotting/items/crosshair.py +0 -94
  394. pymodaq/utils/plotting/items/image.py +0 -388
  395. pymodaq/utils/plotting/navigator.py +0 -353
  396. pymodaq/utils/plotting/plotter/plotter.py +0 -94
  397. pymodaq/utils/plotting/plotter/plotters/__init__.py +0 -0
  398. pymodaq/utils/plotting/plotter/plotters/matplotlib_plotters.py +0 -134
  399. pymodaq/utils/plotting/plotter/plotters/qt_plotters.py +0 -78
  400. pymodaq/utils/plotting/utils/__init__.py +0 -0
  401. pymodaq/utils/plotting/utils/axes_viewer.py +0 -88
  402. pymodaq/utils/plotting/utils/filter.py +0 -585
  403. pymodaq/utils/plotting/utils/lineout.py +0 -226
  404. pymodaq/utils/plotting/utils/plot_utils.py +0 -579
  405. pymodaq/utils/plotting/utils/signalND.py +0 -1347
  406. pymodaq/utils/plotting/widgets.py +0 -76
  407. pymodaq/utils/qvariant.py +0 -12
  408. pymodaq/utils/slicing.py +0 -63
  409. pymodaq/utils/units.py +0 -216
  410. pymodaq-4.4.7.dist-info/METADATA +0 -163
  411. pymodaq-4.4.7.dist-info/RECORD +0 -446
  412. /pymodaq/{post_treatment/daq_analysis → daq_utils}/__init__.py +0 -0
  413. /pymodaq/{utils/abstract/logger.py → extensions/daq_logger/abstract.py} +0 -0
  414. /pymodaq/{post_treatment/daq_measurement → extensions/daq_logger/db}/__init__.py +0 -0
  415. {pymodaq-4.4.7.dist-info → pymodaq-5.0.1.dist-info}/licenses/LICENSE +0 -0
@@ -1,188 +0,0 @@
1
- from qtpy import QtWidgets, QtCore, QtGui
2
- from qtpy.QtCore import QObject, Signal, QLocale
3
- import sys
4
-
5
-
6
- class TreeLayout(QObject):
7
- """
8
- qtpy class object based on QtreeWidget
9
- The function populate_tree has to be used in order to populate the tree with structure as nested lists of dicts
10
-
11
- """
12
- status_sig = Signal(str)
13
- item_clicked_sig = Signal(object)
14
- item_double_clicked_sig = Signal(object)
15
-
16
- def __init__(self, parent=None, col_counts=1, labels=None):
17
-
18
- super().__init__()
19
-
20
- if parent is None:
21
- parent = QtWidgets.QWidget()
22
- self.parent = parent
23
-
24
- self.setupUi()
25
-
26
- self.tree.setColumnCount(col_counts)
27
- if labels is not None:
28
- self.tree.setHeaderLabels(labels)
29
-
30
- self.open_tree_pb.clicked.connect(self.expand_all)
31
- self.close_tree_pb.clicked.connect(self.collapse_all)
32
- self.open_tree_selected_pb.clicked.connect(self.open_tree_selection)
33
-
34
- self.tree.itemClicked.connect(self.item_clicked_sig.emit)
35
- self.tree.itemDoubleClicked.connect(self.item_double_clicked_sig.emit)
36
-
37
- def _current_text(self, col_index: int = 2):
38
- return self.tree.currentItem().text(col_index)
39
-
40
- def current_node_path(self):
41
- return self._current_text(2)
42
-
43
- def expand_all(self):
44
- self.tree.expandAll()
45
-
46
- def collapse_all(self):
47
- self.tree.collapseAll()
48
-
49
- @property
50
- def treewidget(self):
51
- return self.tree
52
-
53
- def setupUi(self):
54
- vlayout = QtWidgets.QVBoxLayout()
55
- hlayout = QtWidgets.QHBoxLayout()
56
-
57
- self.tree = CustomTree()
58
- vlayout.addWidget(self.tree)
59
-
60
- iconopen = QtGui.QIcon()
61
- iconopen.addPixmap(QtGui.QPixmap(":/icons/Icon_Library/tree.png"), QtGui.QIcon.Normal,
62
- QtGui.QIcon.Off)
63
- self.open_tree_pb = QtWidgets.QPushButton('Open Tree')
64
- self.open_tree_pb.setIcon(iconopen)
65
-
66
- iconopensel = QtGui.QIcon()
67
- iconopensel.addPixmap(QtGui.QPixmap(":/icons/Icon_Library/tree.png"), QtGui.QIcon.Normal,
68
- QtGui.QIcon.Off)
69
- self.open_tree_selected_pb = QtWidgets.QPushButton('Open Selected')
70
- self.open_tree_selected_pb.setIcon(iconopensel)
71
-
72
- iconclose = QtGui.QIcon()
73
- iconclose.addPixmap(QtGui.QPixmap(":/icons/Icon_Library/CollapseAll.png"), QtGui.QIcon.Normal,
74
- QtGui.QIcon.Off)
75
- self.close_tree_pb = QtWidgets.QPushButton('Close Tree')
76
- self.close_tree_pb.setIcon(iconclose)
77
-
78
- hlayout.addWidget(self.open_tree_pb)
79
- hlayout.addWidget(self.open_tree_selected_pb)
80
- hlayout.addWidget(self.close_tree_pb)
81
-
82
- vlayout.addLayout(hlayout)
83
-
84
- self.parent.setLayout(vlayout)
85
-
86
- def open_tree_selection(self):
87
- self.tree_open_children(self.tree.selectedIndexes()[0])
88
-
89
- def tree_open_children(self, item_index):
90
- try:
91
- if not (item_index.isValid()):
92
- return
93
-
94
- self.tree.expand(item_index)
95
- except Exception as e:
96
- self.status_sig.emit(str(e))
97
-
98
- def tree_open_parents(self, item_index):
99
- try:
100
- if not (item_index.isValid()):
101
- return
102
- flag = True
103
- empty = QtCore.QModelIndex()
104
- parent = item_index
105
- while flag:
106
- parent = parent.parent()
107
- if parent != empty:
108
- self.tree.expand(parent)
109
- else:
110
- flag = False
111
- break
112
- except Exception as e:
113
- self.status_sig.emit(str(e))
114
-
115
- def populate_tree(self, data_dict):
116
- try:
117
- parents = []
118
- for data in data_dict:
119
- str_list = [str(data['name'])]
120
- if 'filename' in data.keys():
121
- str_list.append(data['filename'])
122
- if 'info' in data.keys():
123
- str_list.append(data['info'])
124
- parent = QtWidgets.QTreeWidgetItem(str_list)
125
- Items = self.populate_sub_tree(data['contents'])
126
- parent.addChildren(Items)
127
- parents.append(parent)
128
-
129
- self.tree.addTopLevelItems(parents)
130
- except Exception as e:
131
- self.status_sig.emit(str(e))
132
-
133
- def populate_sub_tree(self, datas):
134
- try:
135
- parents = []
136
- for data in datas:
137
- str_list = [str(data['name'])]
138
- if 'filename' in data.keys():
139
- str_list.append(data['filename'])
140
- if 'info' in data.keys():
141
- str_list.append(data['info'])
142
- parent = QtWidgets.QTreeWidgetItem(str_list)
143
- if 'contents' in data.keys():
144
- if type(data['contents']) == list:
145
- Items = self.populate_sub_tree(data['contents'])
146
- parent.addChildren(Items)
147
- parents.append(parent)
148
- return parents
149
- except Exception as e:
150
- self.status_sig.emit(str(e))
151
- return parents
152
-
153
-
154
- class CustomTree(QtWidgets.QTreeWidget):
155
-
156
- def __init__(self, parent=None):
157
- super().__init__(parent)
158
- self.setContextMenuPolicy(QtCore.Qt.ActionsContextMenu)
159
-
160
-
161
- if __name__ == '__main__':
162
-
163
-
164
- app = QtWidgets.QApplication(sys.argv)
165
- Form = QtWidgets.QWidget()
166
- prog = TreeLayout(Form, col_counts=2, labels=["Material", "File"])
167
-
168
- # example of actions to add to the tree widget in order to show a context menu
169
- detector_action = QtWidgets.QAction("Grab from camera", None)
170
- prog.tree.addAction(detector_action)
171
- ########################
172
-
173
- Form.show()
174
- data = [dict(name='papa', contents=[
175
- dict(name='fiston', contents=[dict(name='subfiston', contents='baby', filename='Cest pas sorcier')]),
176
- dict(name='fiston1', contents=[dict(name='subfiston', contents='baby', filename='Cest pas malin')]),
177
- dict(name='fiston2', contents=[dict(name='subfiston', contents='baby', filename='Cest pas normal')])]),
178
- dict(name='maman', contents=[dict(name='fistone', contents=[dict(name='subfistone', contents='baby')])])]
179
- prog.populate_tree(data)
180
- # filename='C:\\Data\\2019\\20190220\\Dataset_20190220_004\\Dataset_20190220_004.h5'
181
- # import tables
182
- # h5_file = tables.open_file(filename, mode = "a")
183
- # for node in h5_file.walk_nodes():
184
- # print(node)
185
- # base_node = h5_file.root
186
- # base_tree_item, pixmap_items = h5tree_to_QTree(h5_file, base_node)
187
- # prog.ui.Tree.addTopLevelItem(base_tree_item)
188
- sys.exit(app.exec_())
@@ -1,110 +0,0 @@
1
- # -*- coding: utf-8 -*-
2
- """
3
- Created the 19/10/2023
4
-
5
- @author: Sebastien Weber
6
- """
7
- import datetime
8
-
9
- from qtpy import QtWidgets, QtCore
10
- from qtpy.QtCore import QObject
11
-
12
- from pymodaq.utils.parameter import ParameterTree, Parameter
13
- from pymodaq.utils.config import Config, create_toml_from_dict
14
-
15
-
16
- class TreeFromToml(QObject):
17
- """ Create a ParameterTree from a configuration file"""
18
-
19
- def __init__(self, config: Config = None, capitalize=True):
20
- super().__init__()
21
-
22
- if config is None:
23
- config = Config()
24
- self._config = config
25
- params = [{'title': 'Config path', 'name': 'config_path', 'type': 'str',
26
- 'value': str(self._config.config_path),
27
- 'readonly': True}]
28
- params.extend(self.dict_to_param(config.to_dict(), capitalize=capitalize))
29
-
30
- self.settings = Parameter.create(title='settings', name='settings', type='group',
31
- children=params)
32
- self.settings_tree = ParameterTree()
33
- self.settings_tree.setParameters(self.settings, showTop=False)
34
-
35
- def show_dialog(self) -> bool:
36
-
37
- self.dialog = QtWidgets.QDialog()
38
- self.dialog.setWindowTitle('Please enter new configuration values!')
39
- self.dialog.setLayout(QtWidgets.QVBoxLayout())
40
- buttonBox = QtWidgets.QDialogButtonBox(parent=self.dialog)
41
-
42
- buttonBox.addButton('Save', buttonBox.AcceptRole)
43
- buttonBox.accepted.connect(self.dialog.accept)
44
- buttonBox.addButton('Cancel', buttonBox.RejectRole)
45
- buttonBox.rejected.connect(self.dialog.reject)
46
-
47
- self.dialog.layout().addWidget(self.settings_tree)
48
- self.dialog.layout().addWidget(buttonBox)
49
- self.dialog.setWindowTitle('Configuration entries')
50
- res = self.dialog.exec()
51
-
52
- if res == self.dialog.Accepted:
53
- with open(self._config.config_path, 'w') as f:
54
- config_dict = self.param_to_dict(self.settings)
55
- config_dict.pop('config_path')
56
- create_toml_from_dict(config_dict, self._config.config_path)
57
- return res
58
-
59
- @classmethod
60
- def param_to_dict(cls, param: Parameter) -> dict:
61
- config = dict()
62
- for child in param.children():
63
- if 'group' in child.opts['type']:
64
- config[child.name()] = cls.param_to_dict(child)
65
- else:
66
- if child.opts['type'] == 'datetime':
67
- config[child.name()] = datetime.fromtimestamp(
68
- child.value().toSecsSinceEpoch()) # convert QDateTime to python datetime
69
- elif child.opts['type'] == 'date':
70
- qdt = QtCore.QDateTime()
71
- qdt.setDate(child.value())
72
- pdt = datetime.fromtimestamp(qdt.toSecsSinceEpoch())
73
- config[child.name()] = pdt.date()
74
- elif child.opts['type'] == 'list':
75
- config[child.name()] = child.opts['limits']
76
- else:
77
- config[child.name()] = child.value()
78
- return config
79
-
80
- @classmethod
81
- def dict_to_param(cls, config: dict, capitalize=True) -> Parameter:
82
- params = []
83
- for key in config:
84
- if isinstance(config[key], dict):
85
- params.append({'title': f'{key.capitalize() if capitalize else key}:',
86
- 'name': key, 'type': 'group',
87
- 'children': cls.dict_to_param(config[key], capitalize=capitalize),
88
- 'expanded': 'user' in key.lower() or 'general' in key.lower()})
89
- else:
90
- param = {'title': f'{key.capitalize() if capitalize else key}:',
91
- 'name': key, 'value': config[key]}
92
- if isinstance(config[key], float):
93
- param['type'] = 'float'
94
- elif isinstance(config[key], bool): # placed before int because a bool is an instance of int
95
- param['type'] = 'bool'
96
- elif isinstance(config[key], int):
97
- param['type'] = 'int'
98
- elif isinstance(config[key], datetime.datetime):
99
- param['type'] = 'datetime'
100
- elif isinstance(config[key], datetime.date):
101
- param['type'] = 'date'
102
- elif isinstance(config[key], str):
103
- param['type'] = 'str'
104
- elif isinstance(config[key], list):
105
- param['type'] = 'list'
106
- param['limits'] = config[key]
107
- param['value'] = config[key][0]
108
- param['show_pb'] = True
109
- params.append(param)
110
- return params