pymodaq 4.2.3__py3-none-any.whl → 5.0.0__py3-none-any.whl
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- pymodaq/__init__.py +30 -23
- pymodaq/control_modules/daq_move.py +27 -14
- pymodaq/control_modules/daq_move_ui.py +33 -16
- pymodaq/control_modules/daq_viewer.py +38 -28
- pymodaq/control_modules/daq_viewer_ui.py +6 -6
- pymodaq/control_modules/mocks.py +1 -1
- pymodaq/control_modules/move_utility_classes.py +19 -10
- pymodaq/control_modules/utils.py +18 -12
- pymodaq/control_modules/viewer_utility_classes.py +13 -4
- pymodaq/dashboard.py +166 -118
- pymodaq/examples/custom_app.py +13 -16
- pymodaq/examples/custom_viewer.py +7 -7
- pymodaq/examples/function_plotter.py +13 -12
- pymodaq/examples/parameter_ex.py +50 -25
- pymodaq/examples/tcp_client.py +1 -1
- pymodaq/extensions/__init__.py +1 -1
- pymodaq/extensions/bayesian/bayesian_optimisation.py +15 -12
- pymodaq/extensions/bayesian/utils.py +10 -10
- pymodaq/extensions/console.py +10 -13
- pymodaq/extensions/{daq_logger.py → daq_logger/daq_logger.py} +36 -56
- pymodaq/{utils/db/db_logger → extensions/daq_logger/db}/db_logger.py +16 -15
- pymodaq/{utils/db/db_logger → extensions/daq_logger/db}/db_logger_models.py +2 -0
- pymodaq/{utils/h5modules → extensions/daq_logger}/h5logging.py +7 -8
- pymodaq/extensions/daq_scan.py +153 -247
- pymodaq/extensions/daq_scan_ui.py +11 -9
- pymodaq/extensions/h5browser.py +8 -8
- pymodaq/extensions/pid/__init__.py +6 -3
- pymodaq/extensions/pid/daq_move_PID.py +4 -2
- pymodaq/extensions/pid/pid_controller.py +15 -12
- pymodaq/extensions/pid/utils.py +10 -5
- pymodaq/extensions/utils.py +5 -3
- pymodaq/post_treatment/load_and_plot.py +10 -7
- pymodaq/resources/preset_default.xml +1 -1
- pymodaq/utils/array_manipulation.py +4 -384
- pymodaq/utils/calibration_camera.py +12 -9
- pymodaq/utils/chrono_timer.py +7 -5
- pymodaq/utils/config.py +3 -450
- pymodaq/utils/daq_utils.py +6 -664
- pymodaq/utils/data.py +9 -2774
- pymodaq/utils/exceptions.py +0 -4
- pymodaq/utils/gui_utils/__init__.py +8 -8
- pymodaq/utils/gui_utils/loader_utils.py +38 -0
- pymodaq/utils/gui_utils/utils.py +6 -138
- pymodaq/utils/h5modules/__init__.py +0 -4
- pymodaq/utils/h5modules/module_saving.py +15 -8
- pymodaq/utils/leco/__init__.py +2 -2
- pymodaq/utils/leco/daq_move_LECODirector.py +2 -2
- pymodaq/utils/leco/daq_xDviewer_LECODirector.py +2 -2
- pymodaq/utils/leco/director_utils.py +2 -2
- pymodaq/utils/leco/leco_director.py +3 -3
- pymodaq/utils/leco/pymodaq_listener.py +2 -2
- pymodaq/utils/leco/utils.py +1 -1
- pymodaq/utils/logger.py +4 -76
- pymodaq/utils/managers/batchscan_manager.py +16 -19
- pymodaq/utils/managers/modules_manager.py +10 -7
- pymodaq/utils/managers/overshoot_manager.py +3 -5
- pymodaq/utils/managers/preset_manager.py +37 -15
- pymodaq/utils/managers/preset_manager_utils.py +11 -9
- pymodaq/utils/managers/remote_manager.py +12 -10
- pymodaq/utils/math_utils.py +4 -572
- pymodaq/utils/parameter/__init__.py +4 -11
- pymodaq/utils/parameter/utils.py +4 -299
- pymodaq/utils/scanner/scan_config.py +1 -1
- pymodaq/utils/scanner/scan_factory.py +16 -12
- pymodaq/utils/{plotting → scanner}/scan_selector.py +19 -20
- pymodaq/utils/scanner/scanner.py +10 -8
- pymodaq/utils/scanner/scanners/_1d_scanners.py +8 -5
- pymodaq/utils/scanner/scanners/_2d_scanners.py +5 -5
- pymodaq/utils/scanner/scanners/sequential.py +8 -8
- pymodaq/utils/scanner/scanners/tabular.py +9 -9
- pymodaq/utils/scanner/utils.py +6 -4
- pymodaq/utils/svg/svg_viewer2D.py +3 -4
- pymodaq/utils/tcp_ip/serializer.py +64 -16
- pymodaq/utils/tcp_ip/tcp_server_client.py +10 -8
- {pymodaq-4.2.3.dist-info → pymodaq-5.0.0.dist-info}/METADATA +5 -3
- pymodaq-5.0.0.dist-info/RECORD +123 -0
- {pymodaq-4.2.3.dist-info → pymodaq-5.0.0.dist-info}/WHEEL +1 -1
- pymodaq/post_treatment/process_to_scalar.py +0 -263
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/1d.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/2d.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/3d.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Add2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Add_Step.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Approve.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Approve_All.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Browse_Dir_Path.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Calculator.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/ChnGroup.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/ChnNum.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/ChnText.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/ChnTime.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/ChnWave.png +0 -0
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- pymodaq/resources/QtDesigner_Ressources/Icon_Library/EditRedo.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/EditUndo.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Ellipse.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/EllipseFilled.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Error.png +0 -0
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- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Error_16.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Exit.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Expand.png +0 -0
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- pymodaq/resources/QtDesigner_Ressources/Icon_Library/FFT.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/HLM.ico +0 -0
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- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Help_32.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Histogram.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/LUT_LookUpTable.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/MagnifyingGlass.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/MagnifyingGlass_24.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Marker.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Math.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/MeasurementStudio_32.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Move.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/MoveDown.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/MoveUp.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Multiply.png +0 -0
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- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Open_2D.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Open_File.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Open_File_32.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Open_sim.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Options.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Oscilloscope.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Oscilloscope_16.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Pass.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/RGB.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Rectangle.png +0 -0
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- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Refresh.png +0 -0
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- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Region.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Rendezvous.png +0 -0
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- pymodaq/resources/QtDesigner_Ressources/Icon_Library/SaveAs.png +0 -0
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- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Search.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/SelectPolygon.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Select_24.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Settings.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Snap&Save.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Snapshot.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Snapshot2.png +0 -0
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- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Zoom_out.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Zoom_to_Selection.png +0 -0
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- pymodaq/resources/QtDesigner_Ressources/Icon_Library/camera_snap.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/cartesian.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/clear2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/clear_ROI.png +0 -0
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- pymodaq/resources/QtDesigner_Ressources/Icon_Library/sequence2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/snap.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/sort_ascend.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/spectrumAnalyzer.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/start.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/status_cancelled.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/stop.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/stop2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/stop3.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/stop_all.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/sum.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/surfacePlot.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/tree.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/updateTree.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/utility2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/utility_small.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/vector.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/verify.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/video.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/wait.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/waterfallPlot.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/watershed.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/yellow_light.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/zip_file.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/zoomAuto.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/zoomReset.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/QtDesigner_ressources.bat +0 -2
- pymodaq/resources/QtDesigner_Ressources/QtDesigner_ressources.qrc +0 -234
- pymodaq/resources/QtDesigner_Ressources/QtDesigner_ressources_rc.py +0 -127150
- pymodaq/resources/QtDesigner_Ressources/icons.svg +0 -142
- pymodaq/resources/VERSION +0 -1
- pymodaq/resources/config_template.toml +0 -90
- pymodaq/resources/triangulation_data.npy +0 -0
- pymodaq/utils/abstract/__init__.py +0 -48
- pymodaq/utils/db/__init__.py +0 -0
- pymodaq/utils/db/db_logger/__init__.py +0 -0
- pymodaq/utils/enums.py +0 -76
- pymodaq/utils/factory.py +0 -82
- pymodaq/utils/gui_utils/custom_app.py +0 -133
- pymodaq/utils/gui_utils/dock.py +0 -107
- pymodaq/utils/gui_utils/file_io.py +0 -93
- pymodaq/utils/gui_utils/layout.py +0 -34
- pymodaq/utils/gui_utils/list_picker.py +0 -38
- pymodaq/utils/gui_utils/widgets/__init__.py +0 -5
- pymodaq/utils/gui_utils/widgets/label.py +0 -24
- pymodaq/utils/gui_utils/widgets/lcd.py +0 -111
- pymodaq/utils/gui_utils/widgets/push.py +0 -149
- pymodaq/utils/gui_utils/widgets/qled.py +0 -62
- pymodaq/utils/gui_utils/widgets/spinbox.py +0 -24
- pymodaq/utils/gui_utils/widgets/table.py +0 -263
- pymodaq/utils/gui_utils/widgets/tree_layout.py +0 -188
- pymodaq/utils/gui_utils/widgets/tree_toml.py +0 -102
- pymodaq/utils/h5modules/backends.py +0 -1022
- pymodaq/utils/h5modules/browsing.py +0 -625
- pymodaq/utils/h5modules/data_saving.py +0 -1101
- pymodaq/utils/h5modules/exporter.py +0 -119
- pymodaq/utils/h5modules/exporters/__init__.py +0 -0
- pymodaq/utils/h5modules/exporters/base.py +0 -111
- pymodaq/utils/h5modules/exporters/flimj.py +0 -63
- pymodaq/utils/h5modules/exporters/hyperspy.py +0 -143
- pymodaq/utils/h5modules/saving.py +0 -866
- pymodaq/utils/h5modules/utils.py +0 -115
- pymodaq/utils/managers/action_manager.py +0 -489
- pymodaq/utils/managers/parameter_manager.py +0 -282
- pymodaq/utils/managers/roi_manager.py +0 -726
- pymodaq/utils/messenger.py +0 -66
- pymodaq/utils/parameter/ioxml.py +0 -542
- pymodaq/utils/parameter/pymodaq_ptypes/__init__.py +0 -38
- pymodaq/utils/parameter/pymodaq_ptypes/bool.py +0 -31
- pymodaq/utils/parameter/pymodaq_ptypes/date.py +0 -126
- pymodaq/utils/parameter/pymodaq_ptypes/filedir.py +0 -143
- pymodaq/utils/parameter/pymodaq_ptypes/itemselect.py +0 -265
- pymodaq/utils/parameter/pymodaq_ptypes/led.py +0 -44
- pymodaq/utils/parameter/pymodaq_ptypes/list.py +0 -150
- pymodaq/utils/parameter/pymodaq_ptypes/numeric.py +0 -18
- pymodaq/utils/parameter/pymodaq_ptypes/pixmap.py +0 -175
- pymodaq/utils/parameter/pymodaq_ptypes/slide.py +0 -145
- pymodaq/utils/parameter/pymodaq_ptypes/table.py +0 -135
- pymodaq/utils/parameter/pymodaq_ptypes/tableview.py +0 -149
- pymodaq/utils/parameter/pymodaq_ptypes/text.py +0 -142
- pymodaq/utils/plotting/__init__.py +0 -0
- pymodaq/utils/plotting/data_viewers/__init__.py +0 -10
- pymodaq/utils/plotting/data_viewers/base.py +0 -286
- pymodaq/utils/plotting/data_viewers/viewer.py +0 -274
- pymodaq/utils/plotting/data_viewers/viewer0D.py +0 -298
- pymodaq/utils/plotting/data_viewers/viewer1D.py +0 -820
- pymodaq/utils/plotting/data_viewers/viewer1Dbasic.py +0 -231
- pymodaq/utils/plotting/data_viewers/viewer2D.py +0 -1118
- pymodaq/utils/plotting/data_viewers/viewer2D_basic.py +0 -146
- pymodaq/utils/plotting/data_viewers/viewerND.py +0 -800
- pymodaq/utils/plotting/gant_chart.py +0 -123
- pymodaq/utils/plotting/image_viewer.py +0 -97
- pymodaq/utils/plotting/items/__init__.py +0 -0
- pymodaq/utils/plotting/items/axis_scaled.py +0 -93
- pymodaq/utils/plotting/items/crosshair.py +0 -94
- pymodaq/utils/plotting/items/image.py +0 -388
- pymodaq/utils/plotting/navigator.py +0 -353
- pymodaq/utils/plotting/plotter/plotter.py +0 -94
- pymodaq/utils/plotting/plotter/plotters/__init__.py +0 -0
- pymodaq/utils/plotting/plotter/plotters/matplotlib_plotters.py +0 -134
- pymodaq/utils/plotting/plotter/plotters/qt_plotters.py +0 -78
- pymodaq/utils/plotting/utils/__init__.py +0 -0
- pymodaq/utils/plotting/utils/axes_viewer.py +0 -88
- pymodaq/utils/plotting/utils/filter.py +0 -585
- pymodaq/utils/plotting/utils/lineout.py +0 -226
- pymodaq/utils/plotting/utils/plot_utils.py +0 -579
- pymodaq/utils/plotting/utils/signalND.py +0 -1347
- pymodaq/utils/plotting/widgets.py +0 -76
- pymodaq/utils/qvariant.py +0 -12
- pymodaq/utils/slicing.py +0 -63
- pymodaq/utils/units.py +0 -216
- pymodaq-4.2.3.dist-info/RECORD +0 -438
- /pymodaq/{post_treatment/daq_analysis → extensions/daq_logger}/__init__.py +0 -0
- /pymodaq/{utils/abstract/logger.py → extensions/daq_logger/abstract.py} +0 -0
- /pymodaq/{resources/QtDesigner_Ressources → extensions/daq_logger/db}/__init__.py +0 -0
- {pymodaq-4.2.3.dist-info → pymodaq-5.0.0.dist-info}/entry_points.txt +0 -0
- {pymodaq-4.2.3.dist-info → pymodaq-5.0.0.dist-info}/licenses/LICENSE +0 -0
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from pymodaq.utils.logger import set_logger, get_module_name, get_module_name
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from pymodaq.utils.gui_utils.file_io import select_file
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from qtpy import QtGui, QtWidgets, QtCore
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from qtpy.QtCore import Qt, QObject, Slot, Signal
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import sys
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import os
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import numpy as np
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from pymodaq.utils.data import DataToExport, DataFromPlugins, DataDim, enum_checker, DataWithAxes
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from pymodaq.utils.h5modules.data_saving import DataLoader
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from pymodaq.utils.managers.parameter_manager import ParameterManager
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from pymodaq.utils.managers.action_manager import ActionManager
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from pymodaq.utils.plotting.data_viewers.viewer2D_basic import Viewer2DBasic
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from pymodaq.utils.plotting.items.image import UniformImageItem, SpreadImageItem
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from pymodaq.utils import daq_utils as utils
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from pymodaq.utils.h5modules.browsing import browse_data, H5BrowserUtil
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from pymodaq.utils.h5modules.saving import H5Saver
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from pymodaq.utils import gui_utils as gutils
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from pymodaq.utils.parameter.pymodaq_ptypes.pixmap import PixmapCheckData
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from pymodaq.utils.config import get_set_local_dir, Config
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local_path = get_set_local_dir()
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navigator_path = os.path.join(local_path, 'navigator_temp_files')
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if not os.path.isdir(navigator_path):
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os.makedirs(navigator_path)
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logger = set_logger(get_module_name(__file__))
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Ntick = 128
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colors_red = np.array([(int(r), 0, 0) for r in np.linspace(0, 255, Ntick)])
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colors_green = np.array([(0, int(g), 0) for g in np.linspace(0, 255, Ntick)])
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colors_blue = np.array([(0, 0, int(b)) for b in np.linspace(0, 255, Ntick)])
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config = Config()
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class Navigator(ParameterManager, ActionManager, QObject):
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settings_name = 'navigator_settings'
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log_signal = Signal(str)
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sig_double_clicked = Signal(float, float)
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params = [
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{'title': 'Settings', 'name': 'settings', 'type': 'group', 'children': [
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{'title': 'Load h5:', 'name': 'Load h5', 'type': 'action'},
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{'title': 'h5 path:', 'name': 'filepath', 'type': 'str', 'value': '', 'readonly': True},
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{'title': 'Load Image:', 'name': 'Load Image', 'type': 'action'},
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{'title': 'Image path:', 'name': 'imagepath', 'type': 'str', 'value': '', 'readonly': True},
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]},
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{'title': 'Image', 'name': 'image', 'type': 'pixmap_check'},
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{'title': 'Overlays', 'name': 'overlays', 'type': 'group', 'children': []},
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]
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def __init__(self, parent=None, h5file_path=None):
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QObject.__init__(self)
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ParameterManager.__init__(self)
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ActionManager.__init__(self, toolbar=QtWidgets.QToolBar())
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parent = QtWidgets.QWidget()
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self.title = 'Navigator'
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self.status_time = 1000
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self.dataloader = DataLoader(self._h5saver)
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self.h5file_path = h5file_path
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self.h5saver_image = H5Saver()
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self.viewer: Viewer2DBasic = None
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self.overlays = [] # %list of imageItem items displaying 2D scans info
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self.setup_actions()
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self.setup_ui()
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self.connect_things()
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self.set_aspect_ratio()
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self.h5saver.open_file(h5file_path, 'a')
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self.settings.child('settings', 'filepath').setValue(h5file_path)
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self.settings.child('settings', 'Load h5').hide()
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self.list_2D_scans()
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# self.show_overlay()
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@property
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def h5saver(self):
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return self._h5saver
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@h5saver.setter
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def h5saver(self, h5saver: H5Saver):
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self._h5saver = h5saver
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self.dataloader = DataLoader(h5saver)
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def setup_actions(self):
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self.add_action('load_scan', 'Load Scan file', 'NewLayer', 'Load scan file (.h5)')
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self.add_action('load_image', 'Load Image File', 'Open_File_32', 'Load image file (.h5)')
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self.add_action('ratio', 'Viewbox Aspect Ratio', 'Zoom_1_1', 'Set viewbox aspect ratio to 1', checkable=True)
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self.add_action('move_at', 'Move at DoubleClicked', 'move_contour',
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'When selected, double clicking on viewbox will move DAQ_Move modules',
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checkable=True)
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self.add_action('select_all', 'Select All', 'select_all2', 'Select (show) all 2D scans on the viewer')
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self.add_action('select_none', 'Select None', 'select_none', 'Unselect (hide) all 2D scans on the viewer')
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self.add_action('histogram', 'Show Histograms', 'Histogram', 'Show (hide) histograms', checkable=True)
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def connect_things(self):
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self.connect_action('load_scan', self.load_data)
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self.connect_action('load_image', self.load_image)
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self.connect_action('ratio', self.set_aspect_ratio)
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self.connect_action('select_all', self.show_all)
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self.connect_action('select_none', self.show_none)
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self.connect_action('histogram', self.show_histo)
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self.viewer.sig_double_clicked.connect(self.move_at)
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self.settings.child('settings', 'Load h5').sigActivated.connect(self.load_data)
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self.settings.child('settings', 'Load Image').sigActivated.connect(self.load_image)
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@Slot(float, float)
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def move_at(self, posx, posy):
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if self.is_action_checked('move_at'):
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self.sig_double_clicked.emit(posx, posy)
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def show_histo(self):
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self.viewer.histo_widget.setVisible(self.is_action_checked('histogram'))
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def show_all(self):
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self.show_scans()
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def show_none(self):
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self.show_scans(False)
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def show_scans(self, show=True):
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for child in self.settings.child('overlays'):
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val = child.value()
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val.checked = show
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child.setValue(val)
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child.sigValueChanged.emit(child, val)
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def get_data_from_scan_name(self, scan_name: str) -> DataToExport:
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_data = DataToExport('All')
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self.dataloader.load_all(f'/RawData/{scan_name}', _data)
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data_2D = _data.get_data_from_Naxes(2)
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for dat in data_2D: # convert DataWithAxes DataND to Data2D
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dat.nav_indexes = ()
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return data_2D
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def set_axes(self, dwa: DataWithAxes):
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x_axis = dwa.get_axis_from_index(0)[0]
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y_axis = dwa.get_axis_from_index(1)[0]
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self.viewer.scaled_xaxis.axis_label = x_axis.label
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self.viewer.scaled_yaxis.axis_label = y_axis.label
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self.viewer.scaled_yaxis.axis_units = y_axis.units
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def list_2D_scans(self):
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try:
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scans = self.h5saver.get_scan_groups()
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params = []
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for child in self.settings.child('overlays').children():
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self.settings.child('overlays').removeChild(child)
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ind_overlay = 0
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axes_init = False
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for scan in scans:
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data_2D = self.get_data_from_scan_name(scan.name)
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for _dat in data_2D:
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if not axes_init:
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self.set_axes(_dat)
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axes_init = True
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params.append({'name': f'Overlay{ind_overlay:03.0f}', 'type': 'pixmap_check',
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'value': PixmapCheckData(data=_dat[0], checked=False, path=_dat.path,
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info=f'{scan.name}/{_dat.get_full_name()}')})
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for child in self.settings.child('overlays').children():
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val = child.value()
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val.checked = True
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child.setValue(val)
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except Exception as e:
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logger.exception(str(e))
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def load_image(self):
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data, fname, node_path = browse_data(ret_all=True)
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|
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198
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self.h5saver_image = H5Saver()
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self.h5saver_image.open_file(fname, 'r')
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self.settings.child('settings', 'imagepath').setValue(fname)
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self.settings.child('image').setValue(PixmapCheckData(data=data[0], checked=True, path=data.path))
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self.settings.child('image').sigValueChanged.emit(
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self.settings.child('image'),
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self.settings.child('image').value())
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|
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def load_data(self):
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209
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self.h5file_path = str(select_file(start_path=config('data_saving', 'h5file', 'save_path'),
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save=False, ext='h5'))
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if self.h5file_path != '':
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self.settings.child('settings', 'filepath').setValue(self.h5file_path)
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if self.h5saver is not None:
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if self.h5saver.isopen():
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self.h5saver.close_file()
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self.h5saver.open_file(self.h5file_path, 'a')
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self.list_2D_scans()
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def set_aspect_ratio(self):
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self.viewer.set_aspect_ratio(self.is_action_checked('ratio'))
|
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221
|
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def add_image_data(self, dwa: DataWithAxes):
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223
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ims = []
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histograms = self.viewer.histograms
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225
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for ind, data in enumerate(dwa):
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if ind > 2:
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break
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if dwa.distribution.name == 'spread':
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im = SpreadImageItem()
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else:
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im = UniformImageItem()
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ims.append(im)
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im.setOpacity(1)
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|
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self.viewer.add_image_item(im, histogram=histograms[ind])
|
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|
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im.setCompositionMode(QtGui.QPainter.CompositionMode_Plus)
|
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|
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|
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238
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if dwa.distribution.name == 'uniform':
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|
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x_axis = dwa.get_axis_from_index(1)[0].get_data()
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|
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y_axis = dwa.get_axis_from_index(0)[0].get_data()
|
|
241
|
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|
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rect = QtCore.QRectF(np.min(y_axis), np.min(x_axis),
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|
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(np.max(y_axis) - np.min(y_axis)),
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|
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(np.max(x_axis) - np.min(x_axis)))
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|
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|
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246
|
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im.setImage(data)
|
|
247
|
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im.setOpts(rect=rect)
|
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248
|
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else:
|
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249
|
-
y_axis, x_axis = dwa.get_axis_from_index(0)
|
|
250
|
-
im.setImage(np.vstack((x_axis, y_axis, dwa.data[0])).T)
|
|
251
|
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histograms[ind].setImageItem(im)
|
|
252
|
-
return ims
|
|
253
|
-
|
|
254
|
-
def remove_image_data(self, param):
|
|
255
|
-
for overlay in self.overlays[:]:
|
|
256
|
-
if param.name() in overlay['name']:
|
|
257
|
-
ind = self.overlays.index(overlay)
|
|
258
|
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for image in overlay['images']:
|
|
259
|
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self.viewer.plotitem.removeItem(image)
|
|
260
|
-
self.overlays.pop(ind)
|
|
261
|
-
|
|
262
|
-
def value_changed(self, param):
|
|
263
|
-
|
|
264
|
-
if param.parent().name() == 'overlays':
|
|
265
|
-
data: PixmapCheckData = param.value()
|
|
266
|
-
if data.checked:
|
|
267
|
-
dwa = self.dataloader.load_data(data.path, load_all=True)
|
|
268
|
-
ims = self.add_image_data(dwa)
|
|
269
|
-
self.overlays.append(dict(name=f'{param.name()}_{0}', images=ims))
|
|
270
|
-
|
|
271
|
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else:
|
|
272
|
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self.remove_image_data(param)
|
|
273
|
-
elif param.name() == 'image':
|
|
274
|
-
data: PixmapCheckData = param.value()
|
|
275
|
-
if data.checked:
|
|
276
|
-
dataloader = DataLoader(self.h5saver_image)
|
|
277
|
-
dwa = dataloader.load_data(data.path)
|
|
278
|
-
ims = self.add_image_data(dwa)
|
|
279
|
-
self.overlays.append(dict(name='{:s}_{:03d}'.format(param.name(), 0), images=ims))
|
|
280
|
-
else:
|
|
281
|
-
self.remove_image_data(param)
|
|
282
|
-
|
|
283
|
-
def param_deleted(self, param):
|
|
284
|
-
self.remove_image_data(param)
|
|
285
|
-
|
|
286
|
-
def setup_ui(self):
|
|
287
|
-
layout = QtWidgets.QVBoxLayout()
|
|
288
|
-
|
|
289
|
-
self.parent.setLayout(layout)
|
|
290
|
-
self.parent.layout().addWidget(self.toolbar)
|
|
291
|
-
sett_widget = QtWidgets.QWidget()
|
|
292
|
-
self.sett_layout = QtWidgets.QHBoxLayout()
|
|
293
|
-
sett_widget.setLayout(self.sett_layout)
|
|
294
|
-
|
|
295
|
-
layout.addWidget(self.toolbar)
|
|
296
|
-
|
|
297
|
-
splitter = QtWidgets.QSplitter(Qt.Horizontal)
|
|
298
|
-
layout.addWidget(splitter)
|
|
299
|
-
|
|
300
|
-
# set viewer area
|
|
301
|
-
widg = QtWidgets.QWidget()
|
|
302
|
-
self.viewer = Viewer2DBasic(widg)
|
|
303
|
-
self.viewer.histogram_red.setVisible(True)
|
|
304
|
-
self.viewer.histogram_green.setVisible(True)
|
|
305
|
-
self.viewer.histogram_blue.setVisible(True)
|
|
306
|
-
self.viewer.histogram_adaptive.setVisible(False)
|
|
307
|
-
|
|
308
|
-
self.statusbar = QtWidgets.QStatusBar()
|
|
309
|
-
self.statusbar.setMaximumHeight(25)
|
|
310
|
-
layout.addWidget(self.statusbar)
|
|
311
|
-
self.log_message = QtWidgets.QLabel('Initializing')
|
|
312
|
-
self.statusbar.addPermanentWidget(self.log_message)
|
|
313
|
-
|
|
314
|
-
self.sett_layout.addWidget(self.settings_tree)
|
|
315
|
-
splitter.addWidget(sett_widget)
|
|
316
|
-
splitter.addWidget(self.viewer.parent)
|
|
317
|
-
|
|
318
|
-
def update_h5file(self, h5file):
|
|
319
|
-
if self.h5saver is not None:
|
|
320
|
-
self.h5saver.h5file = h5file
|
|
321
|
-
self.dataloader = DataLoader(self.h5saver)
|
|
322
|
-
self.list_2D_scans()
|
|
323
|
-
|
|
324
|
-
def update_status(self, txt, status_time=0, log_type=None):
|
|
325
|
-
"""
|
|
326
|
-
Show the txt message in the status bar with a delay of status_time ms.
|
|
327
|
-
|
|
328
|
-
=============== =========== =======================
|
|
329
|
-
**Parameters** **Type** **Description**
|
|
330
|
-
*txt* string The message to show
|
|
331
|
-
*status_time* int the delay of showing
|
|
332
|
-
*log_type* string the type of the log
|
|
333
|
-
=============== =========== =======================
|
|
334
|
-
"""
|
|
335
|
-
try:
|
|
336
|
-
self.ui.statusbar.showMessage(txt, status_time)
|
|
337
|
-
logger.info(txt)
|
|
338
|
-
except Exception as e:
|
|
339
|
-
logger.exception(str(e))
|
|
340
|
-
|
|
341
|
-
|
|
342
|
-
def main():
|
|
343
|
-
app = QtWidgets.QApplication(sys.argv)
|
|
344
|
-
widg = QtWidgets.QWidget()
|
|
345
|
-
prog = Navigator(widg)#, h5file_path=r'C:\Data\2023\20230320\Dataset_20230320_001.h5')
|
|
346
|
-
|
|
347
|
-
widg.show()
|
|
348
|
-
prog.list_2D_scans()
|
|
349
|
-
sys.exit(app.exec_())
|
|
350
|
-
|
|
351
|
-
|
|
352
|
-
if __name__ == '__main__':
|
|
353
|
-
main()
|
|
@@ -1,94 +0,0 @@
|
|
|
1
|
-
# Standard imports
|
|
2
|
-
import typing
|
|
3
|
-
from abc import ABCMeta, abstractmethod
|
|
4
|
-
from importlib import import_module
|
|
5
|
-
from pathlib import Path
|
|
6
|
-
from typing import Callable, List, Union
|
|
7
|
-
|
|
8
|
-
# 3rd party imports
|
|
9
|
-
import numpy as np
|
|
10
|
-
|
|
11
|
-
# project imports
|
|
12
|
-
from pymodaq.utils.abstract import abstract_attribute
|
|
13
|
-
from pymodaq.utils.logger import set_logger, get_module_name
|
|
14
|
-
|
|
15
|
-
from pymodaq.utils.factory import ObjectFactory
|
|
16
|
-
|
|
17
|
-
if typing.TYPE_CHECKING:
|
|
18
|
-
from pymodaq.utils.data import DataWithAxes, DataDim
|
|
19
|
-
from pymodaq.utils.plotting.data_viewers import Viewer0D, Viewer1D, Viewer2D, ViewerND
|
|
20
|
-
|
|
21
|
-
logger = set_logger(get_module_name(__file__))
|
|
22
|
-
|
|
23
|
-
|
|
24
|
-
def register_plotter(parent_module_name: str = 'pymodaq.utils.plotting.plotter'):
|
|
25
|
-
plotters = []
|
|
26
|
-
try:
|
|
27
|
-
plotter_module = import_module(f'{parent_module_name}.plotters')
|
|
28
|
-
|
|
29
|
-
plotter_path = Path(plotter_module.__path__[0])
|
|
30
|
-
|
|
31
|
-
for file in plotter_path.iterdir():
|
|
32
|
-
if file.is_file() and 'py' in file.suffix and file.stem != '__init__':
|
|
33
|
-
try:
|
|
34
|
-
plotters.append(import_module(f'.{file.stem}', plotter_module.__name__))
|
|
35
|
-
except ModuleNotFoundError:
|
|
36
|
-
pass
|
|
37
|
-
except ModuleNotFoundError:
|
|
38
|
-
pass
|
|
39
|
-
finally:
|
|
40
|
-
return plotters
|
|
41
|
-
|
|
42
|
-
|
|
43
|
-
class PlotterBase(metaclass=ABCMeta):
|
|
44
|
-
"""Base class for a plotter. """
|
|
45
|
-
|
|
46
|
-
backend: str = abstract_attribute()
|
|
47
|
-
def __init__(self):
|
|
48
|
-
"""Abstract Exporter Constructor"""
|
|
49
|
-
pass
|
|
50
|
-
|
|
51
|
-
@abstractmethod
|
|
52
|
-
def plot(self, data, *args, **kwargs) -> None:
|
|
53
|
-
"""Abstract method to plot data object with a given backend"""
|
|
54
|
-
pass
|
|
55
|
-
|
|
56
|
-
|
|
57
|
-
class PlotterFactory(ObjectFactory):
|
|
58
|
-
"""Factory class registering and storing interactive plotter"""
|
|
59
|
-
|
|
60
|
-
@classmethod
|
|
61
|
-
def register(cls) -> Callable:
|
|
62
|
-
""" To be used as a decorator
|
|
63
|
-
|
|
64
|
-
Register in the class registry a new plotter class using its 2 identifiers: backend and
|
|
65
|
-
data_dim
|
|
66
|
-
"""
|
|
67
|
-
def inner_wrapper(wrapped_class: PlotterBase) -> Callable:
|
|
68
|
-
if cls.__name__ not in cls._builders:
|
|
69
|
-
cls._builders[cls.__name__] = {}
|
|
70
|
-
key = wrapped_class.backend
|
|
71
|
-
|
|
72
|
-
if key not in cls._builders[cls.__name__]:
|
|
73
|
-
cls._builders[cls.__name__][key] = wrapped_class
|
|
74
|
-
else:
|
|
75
|
-
logger.warning(f'The {cls.__name__}/{key} builder is already registered.'
|
|
76
|
-
f' Replacing it')
|
|
77
|
-
return wrapped_class
|
|
78
|
-
|
|
79
|
-
return inner_wrapper
|
|
80
|
-
|
|
81
|
-
@classmethod
|
|
82
|
-
def create(cls, key, **kwargs) -> PlotterBase:
|
|
83
|
-
builder = cls._builders[cls.__name__].get(key)
|
|
84
|
-
if not builder:
|
|
85
|
-
raise ValueError(key)
|
|
86
|
-
return builder(**kwargs)
|
|
87
|
-
|
|
88
|
-
def get(self, backend: str, **kwargs):
|
|
89
|
-
return self.create(backend, **kwargs)
|
|
90
|
-
|
|
91
|
-
def backends(self) -> List[str]:
|
|
92
|
-
"""Returns the list of plotter backends, main identifier of a given plotter"""
|
|
93
|
-
return sorted(list(self.builders[self.__class__.__name__].keys()))
|
|
94
|
-
|
|
File without changes
|
|
@@ -1,134 +0,0 @@
|
|
|
1
|
-
from typing import List, Tuple, Any, TYPE_CHECKING, Union
|
|
2
|
-
import sys
|
|
3
|
-
import datetime
|
|
4
|
-
|
|
5
|
-
import numpy as np
|
|
6
|
-
from qtpy import QtWidgets
|
|
7
|
-
|
|
8
|
-
from pymodaq.utils.logger import set_logger, get_module_name
|
|
9
|
-
from pymodaq.utils import config as configmod
|
|
10
|
-
from pymodaq.utils.data import DataDim, DataWithAxes, DataToExport
|
|
11
|
-
from pymodaq.utils import daq_utils as utils
|
|
12
|
-
from pymodaq.utils.plotting.plotter.plotter import PlotterBase, PlotterFactory
|
|
13
|
-
|
|
14
|
-
from matplotlib import pyplot as plt
|
|
15
|
-
|
|
16
|
-
if TYPE_CHECKING:
|
|
17
|
-
pass
|
|
18
|
-
|
|
19
|
-
logger = set_logger(get_module_name(__file__))
|
|
20
|
-
config = configmod.Config()
|
|
21
|
-
|
|
22
|
-
PLOT_COLORS = utils.plot_colors.copy()
|
|
23
|
-
PLOT_COLORS.remove((255, 255, 255)) # remove white color as plotted on white background
|
|
24
|
-
PLOT_COLORS = [(np.array(color) / 255).tolist() for color in PLOT_COLORS] # translation to matplotlib
|
|
25
|
-
|
|
26
|
-
|
|
27
|
-
@PlotterFactory.register()
|
|
28
|
-
class Plotter(PlotterBase):
|
|
29
|
-
backend = 'matplotlib'
|
|
30
|
-
|
|
31
|
-
def __init__(self, **_ignored):
|
|
32
|
-
super().__init__()
|
|
33
|
-
self.n_lines = 1
|
|
34
|
-
self.n_columns = 1
|
|
35
|
-
self.ind_line = 0
|
|
36
|
-
self.ind_column = 0
|
|
37
|
-
|
|
38
|
-
def plot(self, data: Union[DataWithAxes, DataToExport], *args, viewer=None,
|
|
39
|
-
**kwargs) -> plt.Figure:
|
|
40
|
-
fig = plt.figure()
|
|
41
|
-
|
|
42
|
-
if isinstance(data, DataWithAxes):
|
|
43
|
-
self.n_columns = len(data) if data.dim.name == 'Data2D' else 1
|
|
44
|
-
self.plot_dwa(data, *args, **kwargs)
|
|
45
|
-
elif isinstance(data, DataToExport):
|
|
46
|
-
self.n_columns = max([len(dwa) if dwa.dim.name == 'Data2D' else 1 for dwa in data])
|
|
47
|
-
self.n_lines = len(data)
|
|
48
|
-
self.plot_dte(data, *args, **kwargs)
|
|
49
|
-
plt.tight_layout()
|
|
50
|
-
fig.suptitle(f'{data.name} taken the {datetime.datetime.fromtimestamp(data.timestamp)}')
|
|
51
|
-
return fig
|
|
52
|
-
|
|
53
|
-
def plot_dwa(self, dwa: DataWithAxes, *args, **kwargs):
|
|
54
|
-
if dwa.dim.name == 'Data1D':
|
|
55
|
-
if len(dwa.axes) == 0:
|
|
56
|
-
dwa.create_missing_axes()
|
|
57
|
-
self.ind_column = 0
|
|
58
|
-
self.plot1D(dwa, *args, **kwargs)
|
|
59
|
-
elif dwa.dim.name == 'Data2D':
|
|
60
|
-
if len(dwa.axes) < 2:
|
|
61
|
-
dwa.create_missing_axes()
|
|
62
|
-
self.plot2D(dwa, *args, **kwargs)
|
|
63
|
-
|
|
64
|
-
def plot_dte(self, dte: DataToExport, *args, **kwargs):
|
|
65
|
-
for ind in range(len(dte)):
|
|
66
|
-
self.ind_line = ind
|
|
67
|
-
self.plot_dwa(dte[ind], *args, **kwargs)
|
|
68
|
-
|
|
69
|
-
def plot1D(self, dwa: DataWithAxes, *args, **kwargs):
|
|
70
|
-
plt.subplot(self.n_lines, self.n_columns,
|
|
71
|
-
(self.n_columns * self.ind_line) + 1)
|
|
72
|
-
for ind_data, data_array in enumerate(dwa):
|
|
73
|
-
plt.plot(dwa.axes[0].get_data(), data_array, *args, color=PLOT_COLORS[ind_data],
|
|
74
|
-
**kwargs)
|
|
75
|
-
if dwa.errors is not None:
|
|
76
|
-
plt.fill_between(dwa.axes[0].get_data(), data_array - dwa.get_error(ind_data),
|
|
77
|
-
data_array + dwa.get_error(ind_data), *args,
|
|
78
|
-
color=PLOT_COLORS[ind_data] + [0.3], **kwargs)
|
|
79
|
-
plt.legend(dwa.labels)
|
|
80
|
-
#plt.title(f'{dwa.name}')
|
|
81
|
-
plt.xlabel(f'{dwa.axes[0].label} ({dwa.axes[0].units})')
|
|
82
|
-
plt.ylabel(dwa.name)
|
|
83
|
-
|
|
84
|
-
def plot2D(self, dwa: DataWithAxes, *args, **kwargs):
|
|
85
|
-
xaxis = dwa.get_axis_from_index(1)[0]
|
|
86
|
-
yaxis = dwa.get_axis_from_index(0)[0]
|
|
87
|
-
|
|
88
|
-
x = xaxis.get_data()
|
|
89
|
-
y = yaxis.get_data()
|
|
90
|
-
for ind_plot, dwa_array in enumerate(dwa):
|
|
91
|
-
self.ind_column = ind_plot
|
|
92
|
-
plt.subplot(self.n_lines, self.n_columns,
|
|
93
|
-
(self.n_columns * self.ind_line) + ind_plot + 1)
|
|
94
|
-
X, Y = np.meshgrid(x, y)
|
|
95
|
-
plt.pcolormesh(X, Y, dwa_array, *args, **kwargs)
|
|
96
|
-
plt.title(f'{dwa.name}/{dwa.labels[ind_plot]}')
|
|
97
|
-
plt.xlabel(f'{xaxis.label} ({xaxis.units})')
|
|
98
|
-
plt.ylabel(f'{yaxis.label} ({yaxis.units})')
|
|
99
|
-
|
|
100
|
-
|
|
101
|
-
# if __name__ == '__main__':
|
|
102
|
-
# from pymodaq.utils import data as data_mod
|
|
103
|
-
# import numpy as np
|
|
104
|
-
# from pymodaq.utils.math_utils import gauss1D, gauss2D
|
|
105
|
-
# from pymodaq.utils.plotting.plotter.plotter import PlotterFactory
|
|
106
|
-
# plotter_factory = PlotterFactory()
|
|
107
|
-
#
|
|
108
|
-
# x = np.linspace(0, 100, 101)
|
|
109
|
-
# y = np.linspace(0, 100, 101)
|
|
110
|
-
# y1 = gauss2D(x, 50, 20, y, 40, 7)
|
|
111
|
-
#
|
|
112
|
-
#
|
|
113
|
-
# QtWidgets.QApplication.processEvents()
|
|
114
|
-
# dwa = data_mod.DataRaw('mydata', data=[y1, y1, y1],
|
|
115
|
-
# axes=[data_mod.Axis('xaxis', 'x units', data=x, index=0,
|
|
116
|
-
# spread_order=0),
|
|
117
|
-
# data_mod.Axis('yaxis', 'y units', data=y, index=1,
|
|
118
|
-
# spread_order=0)
|
|
119
|
-
# ],
|
|
120
|
-
# labels=['MAG', 'PHASE'],
|
|
121
|
-
# nav_indexes=())
|
|
122
|
-
# dte = dwa.as_dte('mydte')
|
|
123
|
-
# dwa_mean = dwa.mean()
|
|
124
|
-
# dwa_mean.name = 'mean'
|
|
125
|
-
# dwa_mean_2 = dwa.mean(1)
|
|
126
|
-
# dwa_mean_2.name = 'mean2'
|
|
127
|
-
# dte.append(dwa_mean)
|
|
128
|
-
# dte.append(dwa_mean_2)
|
|
129
|
-
#
|
|
130
|
-
# fig = dwa.plot('matplotlib')
|
|
131
|
-
# fig.savefig('myplot.png')
|
|
132
|
-
#
|
|
133
|
-
# fig2 = dte.plot('matplotlib')
|
|
134
|
-
# fig2.savefig('mydte.png')
|
|
@@ -1,78 +0,0 @@
|
|
|
1
|
-
from typing import List, Tuple, Any, TYPE_CHECKING, Union
|
|
2
|
-
import sys
|
|
3
|
-
|
|
4
|
-
from qtpy import QtWidgets
|
|
5
|
-
|
|
6
|
-
from pymodaq.utils.logger import set_logger, get_module_name
|
|
7
|
-
from pymodaq.utils import config as configmod
|
|
8
|
-
from pymodaq.utils.gui_utils.utils import start_qapplication
|
|
9
|
-
from pymodaq.utils.plotting.plotter.plotter import PlotterBase, PlotterFactory
|
|
10
|
-
from pymodaq.utils.data import DataWithAxes, DataToExport
|
|
11
|
-
from pymodaq.utils.plotting.data_viewers import (Viewer1D, Viewer2D, ViewerND, ViewerDispatcher,
|
|
12
|
-
Viewer0D, ViewersEnum)
|
|
13
|
-
from pymodaq.utils.plotting.data_viewers.viewer import ViewerBase, viewer_factory
|
|
14
|
-
from pymodaq.utils.gui_utils.dock import DockArea
|
|
15
|
-
|
|
16
|
-
logger = set_logger(get_module_name(__file__))
|
|
17
|
-
config = configmod.Config()
|
|
18
|
-
|
|
19
|
-
|
|
20
|
-
@PlotterFactory.register()
|
|
21
|
-
class Plotter(PlotterBase):
|
|
22
|
-
backend = 'qt'
|
|
23
|
-
|
|
24
|
-
def __init__(self, **_ignored):
|
|
25
|
-
super().__init__()
|
|
26
|
-
|
|
27
|
-
def plot(self, data: Union[DataWithAxes, DataToExport], viewer=None, **kwargs) -> ViewerBase:
|
|
28
|
-
do_exit = False
|
|
29
|
-
qapp = QtWidgets.QApplication.instance()
|
|
30
|
-
if qapp is None:
|
|
31
|
-
do_exit = True
|
|
32
|
-
qapp = start_qapplication()
|
|
33
|
-
|
|
34
|
-
if viewer is None:
|
|
35
|
-
if isinstance(data, DataToExport):
|
|
36
|
-
widget = DockArea()
|
|
37
|
-
viewer = ViewerDispatcher(widget, title=data.name)
|
|
38
|
-
else:
|
|
39
|
-
widget = QtWidgets.QWidget()
|
|
40
|
-
viewer_enum = ViewersEnum.get_viewers_enum_from_data(data)
|
|
41
|
-
viewer = viewer_factory.get(viewer_enum.name, parent=widget)
|
|
42
|
-
widget.show()
|
|
43
|
-
|
|
44
|
-
if viewer is not None:
|
|
45
|
-
viewer.show_data(data, **kwargs)
|
|
46
|
-
if isinstance(viewer, Viewer1D):
|
|
47
|
-
if not viewer.is_action_checked('errors'):
|
|
48
|
-
viewer.get_action('errors').trigger()
|
|
49
|
-
QtWidgets.QApplication.processEvents()
|
|
50
|
-
|
|
51
|
-
if do_exit:
|
|
52
|
-
sys.exit(qapp.exec())
|
|
53
|
-
return viewer
|
|
54
|
-
|
|
55
|
-
|
|
56
|
-
if __name__ == '__main__':
|
|
57
|
-
from pymodaq.utils import data as data_mod
|
|
58
|
-
import numpy as np
|
|
59
|
-
from pymodaq.utils.math_utils import gauss1D
|
|
60
|
-
from pymodaq.utils.plotting.plotter.plotter import PlotterFactory
|
|
61
|
-
|
|
62
|
-
qapp = start_qapplication()
|
|
63
|
-
|
|
64
|
-
plotter_factory = PlotterFactory()
|
|
65
|
-
|
|
66
|
-
x = np.random.randint(201, size=201)
|
|
67
|
-
y1 = gauss1D(x, 75, 25)
|
|
68
|
-
y2 = gauss1D(x, 120, 50, 2)
|
|
69
|
-
|
|
70
|
-
QtWidgets.QApplication.processEvents()
|
|
71
|
-
dwa = data_mod.DataRaw('mydata', data=[y1, y2],
|
|
72
|
-
axes=[data_mod.Axis('myaxis', 'units', data=x, index=0,
|
|
73
|
-
spread_order=0)],
|
|
74
|
-
nav_indexes=())
|
|
75
|
-
|
|
76
|
-
dwa.plot('qt')
|
|
77
|
-
dwa.as_dte('mydte').plot('qt')
|
|
78
|
-
sys.exit(qapp.exec())
|
|
File without changes
|